RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1381
(102 letters)
>gnl|CDD|214829 smart00812, Alpha_L_fucos, Alpha-L-fucosidase. O-Glycosyl
hydrolases (EC 3.2.1.-) are a widespread group of
enzymes that hydrolyse the glycosidic bond between two
or more carbohydrates, or between a carbohydrate and a
non-carbohydrate moiety. A classification system for
glycosyl hydrolases, based on sequence similarity, has
led to the definition of 85 different families. This
classification is available on the CAZy
(CArbohydrate-Active EnZymes) web site. Because the fold
of proteins is better conserved than their sequences,
some of the families can be grouped in 'clans'. Family
29 encompasses alpha-L-fucosidases, which is a lysosomal
enzyme responsible for hydrolyzing the alpha-1,6-linked
fucose joined to the reducing-end N-acetylglucosamine of
the carbohydrate moieties of glycoproteins. Deficiency
of alpha-L-fucosidase results in the lysosomal storage
disease fucosidosis.
Length = 384
Score = 132 bits (333), Expect = 1e-38
Identities = 47/82 (57%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 5 NPNSTVTKFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYT 64
P S K +NY P F Y+DFA FTAE FD WAD+ +GAKYVVLT+KHH+G+
Sbjct: 50 QPGSPEYKHHIKNYGPEFGYKDFAPQFTAEKFDPEEWADLFKKAGAKYVVLTTKHHDGFC 109
Query: 65 LWPSKYAFSWNSMDIGPKRDLV 86
LW SKY+ +WN++D GPKRDLV
Sbjct: 110 LWDSKYS-NWNAVDTGPKRDLV 130
>gnl|CDD|216307 pfam01120, Alpha_L_fucos, Alpha-L-fucosidase.
Length = 320
Score = 109 bits (274), Expect = 2e-30
Identities = 43/77 (55%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 12 KFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYA 71
M + Y P TY DFAK F E FDA+ WA + +GAKYVVLT+KHH+G+T+W SKY+
Sbjct: 44 YSMFKAYIPVATYGDFAKQFNPEKFDADEWAKLAKEAGAKYVVLTTKHHDGFTMWDSKYS 103
Query: 72 FSWNSMDIGPKRDLVDY 88
WNS+D GPKRD+V
Sbjct: 104 -DWNSVDTGPKRDIVGE 119
>gnl|CDD|226195 COG3669, COG3669, Alpha-L-fucosidase [Carbohydrate transport and
metabolism].
Length = 430
Score = 84.6 bits (209), Expect = 1e-20
Identities = 34/65 (52%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 22 FTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP 81
F Q+F FTAE +D WA + +GAKYV+L +KHH+G+ LWP+ Y+ WNS+ GP
Sbjct: 40 FGGQEFPPRFTAENWDPREWARLFKEAGAKYVILVAKHHDGFALWPTDYS-VWNSVKRGP 98
Query: 82 KRDLV 86
KRDLV
Sbjct: 99 KRDLV 103
>gnl|CDD|212103 cd10791, GH38N_AMII_like_1, N-terminal catalytic domain of mainly
uncharacterized eukaryotic proteins similar to
alpha-mannosidases; glycoside hydrolase family 38
(GH38). The subfamily of mainly uncharacterized
eukaryotic proteins shows sequence homology with class
II alpha-mannosidases (AlphaAMIIs). AlphaAMIIs possess
a-1,3, a-1,6, and a-1,2 hydrolytic activity, and
catalyze the degradation of N-linked oligosaccharides.
The N-terminal catalytic domain of alphaMII adopts a
structure consisting of parallel 7-stranded beta/alpha
barrel. This subfamily belongs to the GH38 family of
retaining glycosyl hydrolases, which employ a two-step
mechanism involving the formation of a covalent glycosyl
enzyme complex; two carboxylic acids positioned within
the active site act in concert: one as a catalytic
nucleophile and the other as a general acid/base
catalyst.
Length = 254
Score = 28.1 bits (63), Expect = 0.75
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 42 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMD 78
D+LA +G KY+ + H G F W S D
Sbjct: 135 VDVLADAGIKYLSIGVNGHSGPYPPRVPGPFYWESPD 171
>gnl|CDD|216225 pfam00977, His_biosynth, Histidine biosynthesis protein. Proteins
involved in steps 4 and 6 of the histidine biosynthesis
pathway are contained in this family. Histidine is
formed by several complex and distinct biochemical
reactions catalyzed by eight enzymes. The enzymes in
this Pfam entry are called His6 and His7 in eukaryotes
and HisA and HisF in prokaryotes. The structure of HisA
is known to be a TIM barrel fold. In some archaeal HisA
proteins the TIM barrel is composed of two tandem
repeats of a half barrel . This family belong to the
common phosphate binding site TIM barrel family.
Length = 230
Score = 26.3 bits (59), Expect = 2.6
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 36 FDANHWADILASSGAKYVVLTSKHHEG 62
DA WA L GA ++LT +G
Sbjct: 148 IDAVEWAKKLEELGAGEILLTDIDRDG 174
>gnl|CDD|216125 pfam00797, Acetyltransf_2, N-acetyltransferase. Arylamine
N-acetyltransferase (NAT) is a cytosolic enzyme of
approximately 30kDa. It facilitates the transfer of an
acetyl group from Acetyl Coenzyme A on to a wide range
of arylamine, N-hydroxyarylamines and hydrazines.
Acetylation of these compounds generally results in
inactivation. NAT is found in many species from
Mycobacteria (M. tuberculosis, M. smegmatis etc) to man.
It was the first enzyme to be observed to have
polymorphic activity amongst human individuals. NAT is
responsible for the inactivation of Isoniazid (a drug
used to treat Tuberculosis) in humans. The NAT protein
has also been shown to be involved in the breakdown of
folic acid.
Length = 240
Score = 26.5 bits (59), Expect = 2.9
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 45 LASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99
L G VL +G W Y F + P RD+ D+ GN + SP
Sbjct: 132 LVEEGGGIWVLQKDRRDG---WVPLYRF-----TLEP-RDISDFEVGNDYLQTSP 177
>gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional.
Length = 296
Score = 26.2 bits (58), Expect = 3.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 14 MERNYKPGFTYQDFAKDFT 32
M+RN+KPGF KD
Sbjct: 225 MDRNFKPGFRIDLHIKDLA 243
>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism].
Length = 286
Score = 25.6 bits (57), Expect = 4.3
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 12 KFMERNYKPGFTYQDFAKD 30
+ +E ++ PGF KD
Sbjct: 222 RMLEGDFSPGFAVDLMLKD 240
>gnl|CDD|238578 cd01173, pyridoxal_pyridoxamine_kinase, Pyridoxal kinase plays a
key role in the synthesis of the active coenzyme
pyridoxal-5'-phosphate (PLP), by catalyzing the
phosphorylation of the precursor vitamin B6 in the
presence of Zn2+ and ATP. Mammals are unable to
synthesize PLP de novo and require its precursors in the
form of vitamin B6 (pyridoxal, pyridoxine, and
pyridoxamine) from their diet. Pyridoxal kinase encoding
genes are also found in many other species including
yeast and bacteria.
Length = 254
Score = 25.6 bits (57), Expect = 5.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 37 DANHWADILASSGAKYVVLTS 57
DA A L + G K VV+TS
Sbjct: 160 DAKAAARALHAKGPKTVVVTS 180
>gnl|CDD|238574 cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine
phosphate kinase (HMPP-kinase) catalyzes two consecutive
phosphorylation steps in the thiamine phosphate
biosynthesis pathway, leading to the synthesis of
vitamin B1. The first step is the phosphorylation of the
hydroxyl group of HMP to form
4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate
(HMP-P) and then the phophorylation of HMP-P to form
4-amino-5-hydroxymethyl-2-methyl-pyrimidine
pyrophosphate (HMP-PP), which is the substrate for the
thiamine synthase coupling reaction.
Length = 242
Score = 25.5 bits (57), Expect = 5.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 42 ADILASSGAKYVVLTSKHHEG 62
A L + GAK V++ H G
Sbjct: 157 AKALLALGAKAVLIKGGHLPG 177
>gnl|CDD|236181 PRK08193, araD, L-ribulose-5-phosphate 4-epimerase; Reviewed.
Length = 231
Score = 25.2 bits (56), Expect = 5.9
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 81 PKRDLVDYTFGN 92
PK LV +T+GN
Sbjct: 17 PKHGLVTFTWGN 28
>gnl|CDD|201057 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding
domain. This family includes heme binding domains from
a diverse range of proteins. This family also includes
proteins that bind to steroids. The family includes
progesterone receptors. Many members of this subfamily
are membrane anchored by an N-terminal transmembrane
alpha helix. This family also includes a domain in some
chitin synthases. There is no known ligand for this
domain in the chitin synthases.
Length = 74
Score = 24.1 bits (53), Expect = 7.5
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 10 VTKFMERNYKPGFTYQDFA-KDFTAEFFDANH 40
VT+F++ + A KD T F DA H
Sbjct: 26 VTRFLKDHPGGEDVILSAAGKDATEAFEDAIH 57
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family
of proteins contains FAD dependent oxidoreductases and
related proteins.
Length = 415
Score = 24.8 bits (55), Expect = 8.9
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 31 FTAEFF-DANHWADILASSGAKYVV 54
A+ F DA D+ A +GA Y V
Sbjct: 133 IRAKVFIDATGDGDLAALAGAPYRV 157
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.433
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,216,015
Number of extensions: 408597
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 26
Length of query: 102
Length of database: 10,937,602
Length adjustment: 68
Effective length of query: 34
Effective length of database: 7,921,530
Effective search space: 269332020
Effective search space used: 269332020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)