RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1381
         (102 letters)



>d1hl9a2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic
           domain {Thermotoga maritima [TaxId: 2336]}
          Length = 350

 Score = 81.0 bits (199), Expect = 2e-20
 Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)

Query: 6   PNSTVTKFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTL 65
             S   ++  + Y   F Y+ FA  FTAE +D   WAD+   +GAKYV+ T+KHH+G+ L
Sbjct: 69  KESPTWEYHVKTYGENFEYEKFADLFTAEKWDPQEWADLFKKAGAKYVIPTTKHHDGFCL 128

Query: 66  WPSKYAFSWNSMDIGPKRDLV 86
           W +KY   +NS+  GPKRDLV
Sbjct: 129 WGTKYT-DFNSVKRGPKRDLV 148


>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota
          {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 95

 Score = 25.8 bits (57), Expect = 0.63
 Identities = 4/29 (13%), Positives = 11/29 (37%)

Query: 37 DANHWADILASSGAKYVVLTSKHHEGYTL 65
          D      I  + G +  +++  +  G  +
Sbjct: 53 DGRRSLSIAQTVGTRIHIVSVSNDPGQIV 81


>d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus
          [TaxId: 63363]}
          Length = 485

 Score = 26.2 bits (57), Expect = 0.91
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 37 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKY----AFSWNSMDIGPKRDLVDYTF 90
          +A  + D L   G     +   +        S Y     F+ N + I P  +L++   
Sbjct: 25 EAYRFLDFLKECGFSLWQVLPLNPTSLEAGNSPYSSNSLFAGNYVLIDP-EELLEEDL 81


>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal
           domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
          Length = 310

 Score = 25.4 bits (55), Expect = 1.4
 Identities = 10/49 (20%), Positives = 17/49 (34%)

Query: 34  EFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPK 82
           E          L  +G +YVV+   H     L   +  + + + D G  
Sbjct: 123 ERVWQPELVKSLREAGIEYVVVDDYHFMSAGLSKEELFWPYYTEDGGEV 171


>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of
           imidazoleglycerolphosphate synthase HisF {Archaeon
           Pyrobaculum aerophilum [TaxId: 13773]}
          Length = 252

 Score = 25.4 bits (55), Expect = 1.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 36  FDANHWADILASSGAKYVVLTSKHHEG 62
            DA  WA  +   GA  ++LTS   +G
Sbjct: 153 LDAVKWAKEVEELGAGEILLTSIDRDG 179


>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae
          [TaxId: 4932]}
          Length = 104

 Score = 24.3 bits (53), Expect = 2.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 41 WADILASSGAKYVVLTSKHHEGYTL 65
            D + S+G K +VL++ H  G  L
Sbjct: 61 LMDSVESNGGKALVLSTLHSLGEEL 85


>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 111

 Score = 23.6 bits (51), Expect = 3.9
 Identities = 5/25 (20%), Positives = 9/25 (36%)

Query: 41 WADILASSGAKYVVLTSKHHEGYTL 65
            D +  +     + +S H  G  L
Sbjct: 72 LVDSVKENAGTVRIFSSLHVSGEQL 96


>d1moxa1 c.10.2.5 (A:1-162) EGF receptor extracellular domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 162

 Score = 23.7 bits (51), Expect = 5.4
 Identities = 6/28 (21%), Positives = 14/28 (50%)

Query: 35  FFDANHWADILASSGAKYVVLTSKHHEG 62
             ++  W DI++S     + +  ++H G
Sbjct: 134 NVESIQWRDIVSSDFLSNMSMDFQNHLG 161


>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of
           imidazoleglycerolphosphate synthase HisF {Thermus
           thermophilus [TaxId: 274]}
          Length = 251

 Score = 23.2 bits (49), Expect = 7.2
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 37  DANHWADILASSGAKYVVLTSKHHEG 62
            A  WA      GA  ++LTS   +G
Sbjct: 152 HAVEWAVKGVELGAGEILLTSMDRDG 177


>d2dtge4 c.10.2.5 (E:4-156) Insulin receptor {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 153

 Score = 23.0 bits (49), Expect = 8.4
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 35  FFDANHWADILASSGAKYVVLTSKHHE 61
           +     W+ IL S    ++VL    +E
Sbjct: 124 YLATIDWSRILDSVEDNHIVLNKDDNE 150


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.433 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 417,330
Number of extensions: 16936
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 18
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)