BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13810
         (386 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DOM|A Chain A, Crystal Structure Of The Complex Between Tfb5 And The
           C-Terminal Domain Of Tfb2
 pdb|3DOM|C Chain C, Crystal Structure Of The Complex Between Tfb5 And The
           C-Terminal Domain Of Tfb2
          Length = 108

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 46/66 (69%)

Query: 310 DQIRLWEGERERLTTSEGVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGH 369
           DQIRLW+ E +R+ T EG LYS F +  ++  L  YAQD+GVL W+++KK+   ++K+G+
Sbjct: 34  DQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGN 93

Query: 370 SDIKKF 375
           S +  F
Sbjct: 94  SQVLDF 99


>pdb|3DGP|A Chain A, Crystal Structure Of The Complex Between Tfb5 And The
           C-Terminal Domain Of Tfb2
          Length = 80

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 46/66 (69%)

Query: 310 DQIRLWEGERERLTTSEGVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGH 369
           DQIRLW+ E +R+ T EG LYS F +  ++  L  YAQD+GVL W+++KK+   ++K+G+
Sbjct: 6   DQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGN 65

Query: 370 SDIKKF 375
           S +  F
Sbjct: 66  SQVLDF 71


>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
           Methanosarcina Acetivorans Containing A Link Between
           Lys256 And Cys298
 pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
           Methanosarcina Acetivorans Containing A Link Between
           Lys256 And Cys298
          Length = 580

 Score = 29.6 bits (65), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 329 LYSQFVSQADFEKLRDYAQDLGVLTWQN 356
           L SQFVS+ DFE   D+ ++  +L  +N
Sbjct: 27  LLSQFVSKTDFESYEDFQENFKILVPEN 54


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,476,641
Number of Sequences: 62578
Number of extensions: 403888
Number of successful extensions: 865
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 862
Number of HSP's gapped (non-prelim): 3
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)