BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13810
(386 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P60027|TF2H4_PANTR General transcription factor IIH subunit 4 OS=Pan troglodytes
GN=GTF2H4 PE=3 SV=1
Length = 462
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/417 (51%), Positives = 292/417 (70%), Gaps = 35/417 (8%)
Query: 1 ELSEIAKHYVIRLLFVEQPVPQAVIASWLSKTHAKEHKEATDTLTELR------------ 48
EL +AK++V+R+LF+EQP+PQA +A W+ K +K +E+T L+ LR
Sbjct: 47 ELPSLAKNWVMRMLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQ 106
Query: 49 ---------RNAKVALLGGGKPWSM-SAKLEVDSKARDLDFLNQYALERWECILRFMVGS 98
+N ++ALLGGGK WS +++L D ARD+ L++YA ERWE +L FMVGS
Sbjct: 107 GLILNPIFRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGS 166
Query: 99 QQTEGISADAVRTLFNEG-------AENPVITKDGFQFLLLETPAQVWYFILKYLETVES 151
+ +S D + L G E P IT GFQFLLL+TPAQ+WYF+L+YL+T +S
Sbjct: 167 P-SAAVSQDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQS 225
Query: 152 KGLDLVECLTFLFQLKFSTFGTDYSTEGMSDKLQVFLQHLREFGLVYQRKRKAGRFYPTK 211
+G+DLVE L+FLFQL FST G DYS EGMSD L FLQHLREFGLV+QRKRK+ R+YPT+
Sbjct: 226 RGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTR 285
Query: 212 LALNMAT--RGTLKQIREPGFLIVETNFRVYAYTDSNLKVALIGLFCELMYRFPNLTVGV 269
LA+N+++ G + +PGF++VETN+R+YAYT+S L++ALI LF E++YRFPN+ V
Sbjct: 286 LAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQ 345
Query: 270 LTRDSVRAALRSGITAAQIIGFLRLHALPSV---SCPLPPVVSDQIRLWEGERERLTTSE 326
+TR+SV+ A+ SGITA QII FLR A P + + LPP ++DQIRLWE ER+RL +E
Sbjct: 346 VTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTE 405
Query: 327 GVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKFWVNHQKGS 383
GVLY+QF+SQ DFE L +A++LGVL ++N KR +VVT GHSD+K+FW + S
Sbjct: 406 GVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQKHSS 462
>sp|Q92759|TF2H4_HUMAN General transcription factor IIH subunit 4 OS=Homo sapiens
GN=GTF2H4 PE=2 SV=1
Length = 462
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/417 (51%), Positives = 292/417 (70%), Gaps = 35/417 (8%)
Query: 1 ELSEIAKHYVIRLLFVEQPVPQAVIASWLSKTHAKEHKEATDTLTELR------------ 48
EL +AK++V+R+LF+EQP+PQA +A W+ K +K +E+T L+ LR
Sbjct: 47 ELPSLAKNWVMRMLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQ 106
Query: 49 ---------RNAKVALLGGGKPWSM-SAKLEVDSKARDLDFLNQYALERWECILRFMVGS 98
+N ++ALLGGGK WS +++L D ARD+ L++YA ERWE +L FMVGS
Sbjct: 107 GLILNPIFRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGS 166
Query: 99 QQTEGISADAVRTLFNEG-------AENPVITKDGFQFLLLETPAQVWYFILKYLETVES 151
+ +S D + L G E P IT GFQFLLL+TPAQ+WYF+L+YL+T +S
Sbjct: 167 P-SAAVSQDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQS 225
Query: 152 KGLDLVECLTFLFQLKFSTFGTDYSTEGMSDKLQVFLQHLREFGLVYQRKRKAGRFYPTK 211
+G+DLVE L+FLFQL FST G DYS EGMSD L FLQHLREFGLV+QRKRK+ R+YPT+
Sbjct: 226 RGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTR 285
Query: 212 LALNMAT--RGTLKQIREPGFLIVETNFRVYAYTDSNLKVALIGLFCELMYRFPNLTVGV 269
LA+N+++ G + +PGF++VETN+R+YAYT+S L++ALI LF E++YRFPN+ V
Sbjct: 286 LAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQ 345
Query: 270 LTRDSVRAALRSGITAAQIIGFLRLHALPSV---SCPLPPVVSDQIRLWEGERERLTTSE 326
+TR+SV+ A+ SGITA QII FLR A P + + LPP ++DQIRLWE ER+RL +E
Sbjct: 346 VTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTE 405
Query: 327 GVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKFWVNHQKGS 383
GVLY+QF+SQ DFE L +A++LGVL ++N KR +VVT GHSD+K+FW + S
Sbjct: 406 GVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQKHSS 462
>sp|O70422|TF2H4_MOUSE General transcription factor IIH subunit 4 OS=Mus musculus
GN=Gtf2h4 PE=2 SV=1
Length = 463
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/417 (51%), Positives = 292/417 (70%), Gaps = 35/417 (8%)
Query: 1 ELSEIAKHYVIRLLFVEQPVPQAVIASWLSKTHAKEHKEATDTLTELR------------ 48
EL +AK++V+R+LF+EQP+PQA +A W+ K +K +E+T L+ LR
Sbjct: 48 ELPSLAKNWVMRMLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQ 107
Query: 49 ---------RNAKVALLGGGKPWSM-SAKLEVDSKARDLDFLNQYALERWECILRFMVGS 98
+N ++ALLGGGK WS +++L D ARD+ L++YA ERWE +L FMVGS
Sbjct: 108 GLILNPVFRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGS 167
Query: 99 QQTEGISADAVRTLFNEG-------AENPVITKDGFQFLLLETPAQVWYFILKYLETVES 151
+ +S D + L G E P IT GFQFLLL+TPAQ+WYF+L+YL+T +S
Sbjct: 168 P-SAAVSQDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQS 226
Query: 152 KGLDLVECLTFLFQLKFSTFGTDYSTEGMSDKLQVFLQHLREFGLVYQRKRKAGRFYPTK 211
+G+DLVE L+FLFQL FST G DYS EGMSD L FLQHLREFGLV+QRKRK+ R+YPT+
Sbjct: 227 RGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTR 286
Query: 212 LALNMAT--RGTLKQIREPGFLIVETNFRVYAYTDSNLKVALIGLFCELMYRFPNLTVGV 269
LA+N+++ G + +PGF++VETN+R+YAYT+S L++ALI LF E++YRFPN+ V
Sbjct: 287 LAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQ 346
Query: 270 LTRDSVRAALRSGITAAQIIGFLRLHALPSV---SCPLPPVVSDQIRLWEGERERLTTSE 326
+TR+SV+ A+ SGITA QII FLR A P + + LPP ++DQIRLWE ER+RL +E
Sbjct: 347 VTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLRFTE 406
Query: 327 GVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKFWVNHQKGS 383
GVLY+QF+SQ DFE L +A++LGVL ++N KR +VVT GHSD+K+FW + S
Sbjct: 407 GVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQKHSS 463
>sp|P87303|TFB2_SCHPO RNA polymerase II transcription factor B subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfb2 PE=1 SV=2
Length = 447
Score = 265 bits (678), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 157/398 (39%), Positives = 222/398 (55%), Gaps = 31/398 (7%)
Query: 2 LSEIAKHYVIRLLFVEQPVPQAVIASWLSKTHAKEHKEATDTL----------------T 45
L +A+ YV+ +LF PV + W+ + E+ + L +
Sbjct: 36 LPILARQYVMSMLFNPMPVALSDFDLWIKLSSKVYQSESFNKLVRMHIFQFDGQYITLNS 95
Query: 46 ELRRNAKVALLGGGKPWSMSAKL-EVDSKARDLDFLNQYALERWECILRFMVGSQQT--- 101
E R+ AL GGG S + D +DFL+ YA E WE IL FMVG+ +
Sbjct: 96 EFRKQFITALTGGGNHNSFGVPCTDEDKHLVTVDFLDAYAKETWETILHFMVGTPEAKFP 155
Query: 102 -EGISADAVRTLFNEGAENPV-ITKDGFQFLLLETPAQVWYFILKYLETVESKGLDLVEC 159
EG+ + R G +N + IT+ GFQFLL + AQ+W +L YL+ E +D V+
Sbjct: 156 GEGVLSLLKRGGLMSGPKNQLRITRAGFQFLLQDINAQIWTLLLDYLKLSEDTHMDPVQV 215
Query: 160 LTFLFQLKFSTFGTDYSTEGMSDKLQVFLQHLREFGLVYQRKRKAGRFYPTKLALNMATR 219
L FLF L G YS + ++D Q+ L+ LRE+GLVYQRK + RFYPT+LA + T
Sbjct: 216 LHFLFMLGSLDLGRAYSVDFLTDTQQIMLEDLREYGLVYQRKITSKRFYPTRLATGLTTD 275
Query: 220 ------GTLKQIREPGFLIVETNFRVYAYTDSNLKVALIGLFCELMYRFPNLTVGVLTRD 273
+ + GF+IVETN+R+YAYT S L++A+IGLF L RF NL VGV+TRD
Sbjct: 276 YRSLHGKQSENDDDKGFIIVETNYRLYAYTSSPLQIAIIGLFANLRARFSNLVVGVITRD 335
Query: 274 SVRAALRSGITAAQIIGFLRLHALPSV--SCP-LPPVVSDQIRLWEGERERLTTSEGVLY 330
S+R AL +GI A QII +L HA P + + P LPP + DQI LWE E+ RL + G+L+
Sbjct: 336 SIRRALMNGIAAEQIITYLTTHAHPQMRSNVPLLPPTLVDQIYLWELEKNRLRATPGILF 395
Query: 331 SQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQG 368
F++ + F++ +YA++LGVL W + KR +T G
Sbjct: 396 RDFLTDSGFDQAVEYAKELGVLVWDSSLKRMFFITTTG 433
>sp|Q6BZX4|TFB2_YARLI RNA polymerase II transcription factor B subunit 2 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TFB2 PE=3 SV=1
Length = 467
Score = 245 bits (625), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 205/355 (57%), Gaps = 27/355 (7%)
Query: 48 RRNAKVALLGGGKPWSMSAKLEVDSKAR-DLDFLNQYALERWECILRFMVGSQQTEGISA 106
++N + AL+GG + S + + K + D+ FL+ +A+ +WE IL FMVG+ S
Sbjct: 100 KKNLRAALVGGDQNISFGVPCDTEDKHKVDVAFLDAHAVSQWEMILHFMVGTSIGRTPSD 159
Query: 107 DAVRTLFNEGAENPV-----ITKDGFQFLLLETPAQVWYFILKYLETVESKGLDLVECLT 161
+ L + G P IT GFQFLL + AQ+W +L+YL E +D V+ L
Sbjct: 160 GVLNLLKHSGLMEPERGGLRITNAGFQFLLQDVNAQIWTLLLQYLNMSEYLQMDPVDVLN 219
Query: 162 FLFQLKFSTFGTDYSTEGMSDKLQVFLQHLREFGLVYQRKRKAGRFYPTKLA-------- 213
F+F L G DYS +S+ + L+ LR++G+VYQRK + RFYPT+LA
Sbjct: 220 FIFMLGSLELGQDYSLSALSETQKHMLEDLRDYGIVYQRKASSRRFYPTRLATTLTSETA 279
Query: 214 --------LNMATRGTLKQ--IREPGFLIVETNFRVYAYTDSNLKVALIGLFCELMYRFP 263
+ AT+ T+ + GF+I+ETNFR+YAYT+S L++A++ LF L RF
Sbjct: 280 ALRTASQSMEAATQDTISSSVAADSGFIILETNFRLYAYTESPLQIAVLNLFVNLKTRFA 339
Query: 264 NLTVGVLTRDSVRAALRSGITAAQIIGFLRLHALP---SVSCPLPPVVSDQIRLWEGERE 320
N+ G + RDSVR AL +GITA QII +L +HA P + LPP V DQI+LW+ E +
Sbjct: 340 NMVTGQINRDSVRFALSNGITAEQIITYLSVHAHPRMKGMEHVLPPTVVDQIKLWQLEMD 399
Query: 321 RLTTSEGVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKF 375
R+ ++G L+S+F + +++ + YA++LGVL ++N KR V T G I +F
Sbjct: 400 RIRATDGYLFSEFKNFDEYKDVSTYAKELGVLLYENPGKRKFVSTLAGSQQIVEF 454
>sp|Q6CLR2|TFB2_KLULA RNA polymerase II transcription factor B subunit 2 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=TFB2 PE=3 SV=1
Length = 496
Score = 232 bits (591), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 143/451 (31%), Positives = 221/451 (49%), Gaps = 77/451 (17%)
Query: 2 LSEIAKHYVIRLLFVEQPVPQAVIASWLSKTHAKEHKEATDTLTEL-------------- 47
LS +AK +++ +LF + V + W+ + + + ++ L
Sbjct: 39 LSPMAKFFIMSMLFQDHDVSLRDLDKWVKPDAKYQLQYSIKSMKSLNLIIEGESKQPLLI 98
Query: 48 ------RRNAKVALLGGGKPWSMSAKLEVDSKARDLDFLNQYALERWECILRFMVGSQQT 101
+++ K L GG S + D+ L+QY+ E+WE IL +MVG+ T
Sbjct: 99 RLNPIFKKSFKNVLTGGEINNSFGDVADDDTNPVSTATLDQYSAEKWETILHYMVGTPNT 158
Query: 102 EGISADAVRTLFNEGAENPV------ITKDGFQFLLLETPAQVWYFILKYLETVESKGLD 155
+ L + G IT GFQFLL + AQ+W +L+YL+ ES +D
Sbjct: 159 NTPGGKVLDLLQHSGLMEEAEYGELKITNQGFQFLLQDVNAQMWTLLLQYLKMAESLQMD 218
Query: 156 LVECLTFLFQLKFSTFGTDYSTEGMSDKLQVFLQHLREFGLVYQRKRKAGRFYPTKLA-- 213
V+ L F+F L G Y + +S+ + LQ +R++GL+YQ + +FYPT+LA
Sbjct: 219 PVDVLNFIFMLGALQLGKAYKCDQLSNTQRTMLQDMRDYGLIYQNQSDYAKFYPTRLATL 278
Query: 214 ------------------LNMATRGT----------LKQIREPGFLIVETNFRVYAYTDS 245
LN A T + + G LI+ETNF++Y+Y++S
Sbjct: 279 LTSDTKAFRSASVALDSVLNKANETTAVEGDSGQDETTERTQDGALIIETNFKLYSYSNS 338
Query: 246 NLKVALIGLFCELMYRFPNLTVGVLTRDSVRAALRSGITAAQIIGFLRLHALPSVS---- 301
L++A++ LF L RF N+ G LTR+SVR AL +GITA QII +L HA P +
Sbjct: 339 PLQIAILSLFVHLKSRFANMVTGQLTRESVRNALLNGITAEQIIAYLETHAHPRMRRLAE 398
Query: 302 -----------------CPLPPVVSDQIRLWEGERERLTTSEGVLYSQFVSQADFEKLRD 344
LPP V DQIRLW+ E +R+ + +G LY+ F S +++ + D
Sbjct: 399 ENLSKKLELDPTVKETLQVLPPTVVDQIRLWQLELDRIISYDGYLYTDFESYQEYQTVAD 458
Query: 345 YAQDLGVLTWQNEKKRTVVVTKQGHSDIKKF 375
YA+D+GVL WQNEKK+ V+ +G+S + F
Sbjct: 459 YAKDIGVLLWQNEKKKMFFVSTEGNSQVLDF 489
>sp|Q6BGW8|TFB2_DEBHA RNA polymerase II transcription factor B subunit 2 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=TFB2 PE=3 SV=2
Length = 515
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 152/475 (32%), Positives = 220/475 (46%), Gaps = 95/475 (20%)
Query: 2 LSEIAKHYVIRLLFVEQPVPQAVIASWLSKTHAKEHKEATDTLTEL-------------- 47
L IAK Y++ +LF E PV + W T K ++ L L
Sbjct: 40 LPPIAKFYIMTMLFYETPVALKDLDKWCKPTSRKFQFDSLKRLRALHLIEEDSSGSHIRL 99
Query: 48 ----RRNAKVALLGG-GKPWSMSAKLEVDSKARDLDFLNQYALERWECILRFMVGSQQTE 102
R+N + L G + + D ++ + FL+ +AL++WE IL FMVG++ +
Sbjct: 100 HPTFRQNFRDCLTGSQARNAFGNLSTTPDEQSVSIKFLDSFALQKWESILHFMVGTELSV 159
Query: 103 GISADAVRTL--------FNEGAENPVITKDGFQFLLLETPAQVWYFILKYLETVESKGL 154
S + L N+G IT GFQFLL + AQ+W +L+YL + +
Sbjct: 160 TPSNSVLSLLKSGGLMEGTNKGGNRLNITNSGFQFLLQDINAQIWTLLLQYLNLTQDLNM 219
Query: 155 DLVECLTFLFQLKFSTFGTDYSTEGMSDKLQVFLQHLREFGLVYQRKRKAGRFYPTKLAL 214
D V+ L F+F L G Y+ +S+ L LR++GL+YQR + RFYPT+LA
Sbjct: 220 DPVDVLNFIFILGSLELGKGYTVSSLSETQISMLADLRDYGLIYQRSENSERFYPTRLAT 279
Query: 215 ------------NMATRGTLKQIREP------------GFLIVETNFRVYAYTDSNLKVA 250
+MA L+ E G +I+ETNF++YAYT+S L++A
Sbjct: 280 TLTSDSAALKSPSMAMEQALESTTETEEQQNLASNSNQGTIILETNFKIYAYTNSPLEIA 339
Query: 251 LIGLFCELMYRFPNLTVGVLTRDSVRAALRSGITAAQIIGFLRLHALPSV---------- 300
++ LF L RF N+ G +TR+S+R AL +GITA QII FL HA +
Sbjct: 340 ILNLFVHLKTRFSNMVCGQITRESIRNALYNGITADQIIKFLETHAHSQMKILAKERLDK 399
Query: 301 --------------SCP--------------------LPPVVSDQIRLWEGERERLTTSE 326
P LPP V DQI+LW+ E +R+ T E
Sbjct: 400 KIEFDTSNNINTAGGAPQSQMMTNENGTTVAQHKLEVLPPTVVDQIKLWQLELDRIQTFE 459
Query: 327 GVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKFWVNHQK 381
G L+ F SQ +FE L +YA ++GVL W N+ K VTK G S + F +Q+
Sbjct: 460 GYLFKDFASQQEFEALSNYASEIGVLLWSNKSKMKFFVTKDGISQVADFASRNQR 514
>sp|Q02939|TFB2_YEAST RNA polymerase II transcription factor B subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFB2 PE=1
SV=1
Length = 513
Score = 228 bits (581), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 149/467 (31%), Positives = 233/467 (49%), Gaps = 94/467 (20%)
Query: 2 LSEIAKHYVIRLLFVEQPVPQAVIASWLSKTHAKEHKEATDTL----------------T 45
L +AK +++ ++F E VP + W++ + + A ++
Sbjct: 39 LPPLAKFFIMAMVFNENEVPLLDLDKWVNSNGKLQFQNAIKSMKSLHLLIPNKSSGTLMI 98
Query: 46 ELRRNAKVAL---LGGGKPWSMSAKLEVDSKARDLDFLNQYALERWECILRFMVGSQQTE 102
L K++L L GG+ + S + V+ LD L++Y+ +WE IL FMVG+ +
Sbjct: 99 NLNPTFKISLRNALTGGEVQN-SFGVVVEENVVSLDLLDEYSANKWETILHFMVGTPLAK 157
Query: 103 GISADAVRTLFNEGAENPV-------ITKDGFQFLLLETPAQVWYFILKYLETVESKGLD 155
S + L + V IT +GFQFLL E +Q+W +L+YL+ +E+ +D
Sbjct: 158 IPSEKVLNLLKHSKLMEEVNSTGEFKITNEGFQFLLQEINSQLWTLLLQYLKMIETSKMD 217
Query: 156 LVECLTFLFQLKFSTFGTDYSTEGMSDKLQVFLQHLREFGLVYQRKRKAGRFYPTKLALN 215
LV+ L F+F L G Y + +S+ ++ LQ +R++GLV+Q+ FYPTKLAL
Sbjct: 218 LVDVLHFIFMLGALEVGKAYKIDALSETQRIMLQDMRDYGLVFQKHSNDSIFYPTKLALM 277
Query: 216 M------------ATRGTLKQIRE----------------------------------PG 229
+ A L+Q RE G
Sbjct: 278 LTSDTKTIRSASNAMDSVLRQNREEPSVNEDGANGKSTTDITTSDDLNKAGLKNQDIPDG 337
Query: 230 FLIVETNFRVYAYTDSNLKVALIGLFCELMYRFPNLTVGVLTRDSVRAALRSGITAAQII 289
LIVETNF++Y+Y++S L++A++ LF L RF N+ +G +TR+S+R AL +GITA QII
Sbjct: 338 SLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQII 397
Query: 290 GFLRLHALPSV----------------SCP-----LPPVVSDQIRLWEGERERLTTSEGV 328
+L HA P + +C LPP V DQIRLW+ E +R+ T EG
Sbjct: 398 AYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGS 457
Query: 329 LYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKF 375
LYS F + ++ L YAQD+GVL W+++KK+ ++K+G+S + F
Sbjct: 458 LYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVLDF 504
>sp|Q75B51|TFB2_ASHGO RNA polymerase II transcription factor B subunit 2 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=TFB2 PE=3 SV=1
Length = 514
Score = 221 bits (563), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 137/459 (29%), Positives = 228/459 (49%), Gaps = 85/459 (18%)
Query: 2 LSEIAKHYVIRLLFVEQPVPQAVIASWLSKTHAKEHKEATDTLTEL-------------- 47
LS +AK +++ ++F ++ V + W+ + +A ++ L
Sbjct: 48 LSPMAKFFIMSMIFQDEEVSLRDLDRWVKPDAKFQLHDAIKSMKLLHLITEGRSGQPLMV 107
Query: 48 ------RRNAKVALLGGGKPWSMSAKLEVDSKARDLDFLNQYALERWECILRFMVGSQQT 101
+ + K AL GG S +E ++ + L+ YA ++WE IL FMVG+ T
Sbjct: 108 QLNSIFKESFKNALTGGEVKNSFGNVVEEENDPVTMAMLDSYAADKWETILHFMVGTPLT 167
Query: 102 EGISADAVRTL-------FNEGAENPVITKDGFQFLLLETPAQVWYFILKYLETVESKGL 154
+ + + L +E ++ IT +GFQFLL + AQ+W +L+YL E+ +
Sbjct: 168 KSPGKNVLSLLRHSKLMEVDESSKELKITNEGFQFLLQDANAQIWTLLLQYLTMAETFQM 227
Query: 155 DLVECLTFLFQLKFSTFGTDYSTEGMSDKLQVFLQHLREFGLVYQRKRKAGRFYPTKLAL 214
D V+ L +F + G YS G+S+ + LQ LR++GLV+Q++ +FYPT+LA
Sbjct: 228 DPVDVLNLIFMIGALELGKAYSVVGLSETQKTMLQDLRDYGLVFQKQSNLSKFYPTRLAT 287
Query: 215 NM------------ATRGTLKQIRE-------------------------PGFLIVETNF 237
+ A L+Q E G LIVETNF
Sbjct: 288 MLTSDVVSIRSASGAVNSVLRQRAEGVDGKVLNGTALGDDDLQAGGEGALDGALIVETNF 347
Query: 238 RVYAYTDSNLKVALIGLFCELMYRFPNLTVGVLTRDSVRAALRSGITAAQIIGFLRLHAL 297
++Y+Y++S L++A++ LF L RF N+ G +TR+S+R AL +GITA QII ++ HA
Sbjct: 348 KLYSYSNSPLQIAILSLFIHLKTRFQNMVTGQITRESIRRALHNGITADQIIAYMETHAH 407
Query: 298 PSV----------------SC-----PLPPVVSDQIRLWEGERERLTTSEGVLYSQFVSQ 336
P + +C LPP V DQI+LW+ E +R+ + +G L+ F +
Sbjct: 408 PQMRRLAGDNLEKKLELDPNCRDTLQVLPPTVVDQIKLWQLELDRIISYDGYLFRDFDNL 467
Query: 337 ADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKF 375
+++ L YA+D+GVL W ++KK+ V+K+G++ + F
Sbjct: 468 QEYQVLAQYARDIGVLLWSDDKKKMFFVSKEGNAQVIDF 506
>sp|Q6FP41|TFB2_CANGA RNA polymerase II transcription factor B subunit 2 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=TFB2 PE=3 SV=1
Length = 504
Score = 218 bits (556), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 143/458 (31%), Positives = 227/458 (49%), Gaps = 86/458 (18%)
Query: 2 LSEIAKHYVIRLLFVEQPVPQAVIASWLSKTHAKEHKEATDTLTEL-------------- 47
L +AK +++ ++F ++ + + W+ + +EA ++ L
Sbjct: 39 LPTLAKFFIMTVIFNDKDISLRDLDRWVKSNGKLQFQEAIKSMKSLHLLIPTRVNGQLLI 98
Query: 48 ------RRNAKVALLGGGKPWSMSAKLEVD--SKARDLDFLNQYALERWECILRFMVGSQ 99
R + + AL GG S ++ D +L L++YA +WE IL FMVG+
Sbjct: 99 NLNPTFRESFRNALTGGEVNNSFGIVVDEDRLDTVVNLAVLDEYAATKWETILHFMVGTP 158
Query: 100 QTEGISADAVRTLFNEG--AENP-----VITKDGFQFLLLETPAQVWYFILKYLETVESK 152
+ S + + L + E P +IT +GFQFLL E +Q+W +L+YL+ ES
Sbjct: 159 MAKMPSENVLNLLKHSKLMEEVPDSSEFMITNEGFQFLLQEVNSQIWSLLLQYLKLAESL 218
Query: 153 GLDLVECLTFLFQLKFSTFGTDYSTEGMSDKLQVFLQHLREFGLVYQRKRKAGRFYPTKL 212
+D V L F+F L G YSTE +S+ L +R++GLV+Q+ FYPT+L
Sbjct: 219 HMDPVHVLNFIFMLGALETGKAYSTENLSETQLKMLLDMRDYGLVFQKTSNPNIFYPTRL 278
Query: 213 ALNMATRGTLKQIR----------------------------------EPGFLIVETNFR 238
A M T T K +R + G LI+ETNF+
Sbjct: 279 A-QMLTSDT-KSMRTASGAMESVLNKPDDAAKSTDDKYDSLEGKAEDIQDGALIIETNFK 336
Query: 239 VYAYTDSNLKVALIGLFCELMYRFPNLTVGVLTRDSVRAALRSGITAAQIIGFLRLHALP 298
+Y+Y +S L++A++ LF L RF N+ G +TR+S+R AL +GITA Q+I +L HA P
Sbjct: 337 LYSYCNSPLQIAILSLFVHLKSRFANMVAGQITRESIRRALINGITADQVIAYLESHAHP 396
Query: 299 SV----------------SCP-----LPPVVSDQIRLWEGERERLTTSEGVLYSQFVSQA 337
+ +C LPP V DQI+LW+ E +R+ T EG LY F +
Sbjct: 397 QMRRLAEEKLQKKLELDPNCKDPLQVLPPTVVDQIKLWQLELDRVLTYEGSLYIDFDTAQ 456
Query: 338 DFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKF 375
DF L YAQD+G L W++++KR + V+++G++ + ++
Sbjct: 457 DFNMLCKYAQDIGALLWKDDRKRKLFVSREGNAQVLEY 494
>sp|Q54C29|TF2H4_DICDI General transcription factor IIH subunit 4 OS=Dictyostelium
discoideum GN=gtf2h4 PE=3 SV=1
Length = 483
Score = 195 bits (495), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 200/335 (59%), Gaps = 21/335 (6%)
Query: 62 WSMSAKLEVDSKARDLDFLNQYALERWECILRFMVGS--QQTEGISADAVRT-LFNEGAE 118
+S ++ ++ + K +D L+ Y+ +WE +L F+ Q ++ IS + + L + +
Sbjct: 143 FSNNSSIKDNHKPPSIDDLDSYSKSQWEKVLYFLSDDTVQPSKLISELLLSSNLTKQEGD 202
Query: 119 NPVITKDGFQFLLLETPAQVWYFILKYLETVESK----GLDLVECLTFLFQLKFSTFGTD 174
IT +GF+FLL + Q+W ++ YL+ +E K + L+FLF+L F G
Sbjct: 203 GLSITSEGFKFLLKDVYTQIWTLLIVYLDDLEKKKGKGSGSRNDLLSFLFRLSFLNLGRG 262
Query: 175 YSTEGMSDKLQVFLQHLREFGLVYQRKRKAGRFYPTKLALNMATRGTLKQI--------- 225
Y +S++ + +L L++FGL+Y R + FYPT+L +++ T TL I
Sbjct: 263 YLVSELSEQQKEYLFALKQFGLIYMRTDSSILFYPTRLIISLTTGKTLSLIQSISSERTQ 322
Query: 226 --REPGFLIVETNFRVYAYTDSNLKVALIGLFCELMYRFPNLTVGVLTRDSVRAALRSGI 283
+E G++++ETN+R+YAYT S+L+++L+ LF +++YR PNL VG++TR+S+R AL GI
Sbjct: 323 TQKEQGYIVLETNYRLYAYTSSSLQISLLSLFVKMLYRLPNLAVGIITRESIRTALIHGI 382
Query: 284 TAAQIIGFLRLHALPSVSC---PLPPVVSDQIRLWEGERERLTTSEGVLYSQFVSQADFE 340
TA QII F+R ++ P+ + P+P VV++QI LWE ER R+T ++ VLY+ F + +
Sbjct: 383 TADQIIDFVRHNSHPNAANSGQPIPDVVAEQILLWEAERNRITYTKSVLYNSFPTNDCYI 442
Query: 341 KLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKF 375
+A++ W ++ +T+VV ++G+ I+ F
Sbjct: 443 ATLKFAKEQDYYIWSHDPLKTLVVKEEGNDPIRNF 477
>sp|Q1IVP4|SYE1_KORVE Glutamate--tRNA ligase 1 OS=Koribacter versatilis (strain Ellin345)
GN=gltX1 PE=3 SV=1
Length = 518
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 298 PSVSCPLPPV-VSDQIRLWEGERERLTTSEGVLYSQFVSQADFEKLRDYA 346
P V P PP SD+I ++ ERL +EG Y F SQAD + R+ A
Sbjct: 75 PDVGGPFPPYRQSDKIDVYREHAERLV-AEGKAYYCFCSQADLDAYREQA 123
>sp|Q0VC54|ZNT6_BOVIN Zinc transporter 6 OS=Bos taurus GN=SLC30A6 PE=2 SV=1
Length = 461
Score = 32.0 bits (71), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 244 DSNLKVALIGLFCELMYRFPNLTVGVLTRDSVRAALRSGITAAQIIGFLRLHALPSVSCP 303
D+N ++ L + L LTV + D +R AL SG AA ++ F H + P
Sbjct: 306 DANEQMVLAHVTNRLYTLVSTLTVQIFKDDWIRPALLSGPVAANVLNFTDHHVI-----P 360
Query: 304 LPPV 307
+PP+
Sbjct: 361 MPPL 364
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,193,995
Number of Sequences: 539616
Number of extensions: 5520930
Number of successful extensions: 13954
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13896
Number of HSP's gapped (non-prelim): 20
length of query: 386
length of database: 191,569,459
effective HSP length: 119
effective length of query: 267
effective length of database: 127,355,155
effective search space: 34003826385
effective search space used: 34003826385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)