Query psy13810
Match_columns 386
No_of_seqs 133 out of 210
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 21:05:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3471|consensus 100.0 3E-134 6E-139 999.9 34.6 381 1-382 45-464 (465)
2 TIGR00625 tfb2 Transcription f 100.0 4E-131 9E-136 1001.2 42.7 380 1-381 30-448 (448)
3 COG5144 TFB2 RNA polymerase II 100.0 7E-113 1E-117 826.4 25.8 377 2-381 39-446 (447)
4 PF03849 Tfb2: Transcription f 100.0 1E-101 3E-106 775.8 32.7 298 1-298 27-366 (366)
5 PF13625 Helicase_C_3: Helicas 99.6 2.1E-15 4.5E-20 131.1 12.2 117 231-352 2-120 (129)
6 TIGR00603 rad25 DNA repair hel 97.2 0.0028 6E-08 70.0 12.1 105 228-345 22-132 (732)
7 PF08671 SinI: Anti-repressor 91.6 0.19 4.1E-06 33.8 2.6 22 274-295 8-29 (30)
8 PRK06015 keto-hydroxyglutarate 86.7 6.2 0.00013 37.4 10.0 125 228-378 28-164 (201)
9 PRK05718 keto-hydroxyglutarate 79.2 22 0.00049 33.8 10.6 163 180-379 1-176 (212)
10 PRK07114 keto-hydroxyglutarate 77.6 36 0.00078 32.8 11.5 125 228-378 39-180 (222)
11 PF01081 Aldolase: KDPG and KH 77.0 4.7 0.0001 38.1 5.2 126 228-379 32-169 (196)
12 TIGR01182 eda Entner-Doudoroff 73.5 38 0.00083 32.1 10.4 126 228-379 32-169 (204)
13 KOG1123|consensus 65.9 11 0.00024 40.8 5.5 88 228-324 82-169 (776)
14 PRK06552 keto-hydroxyglutarate 64.7 83 0.0018 29.9 10.7 86 228-326 37-137 (213)
15 PRK14529 adenylate kinase; Pro 60.7 31 0.00067 33.1 7.1 80 259-350 23-103 (223)
16 PF08356 EF_assoc_2: EF hand a 52.8 16 0.00034 30.5 3.2 27 119-145 26-57 (89)
17 TIGR01615 A_thal_3542 uncharac 51.4 6.2 0.00013 35.2 0.6 52 227-296 47-99 (131)
18 KOG4175|consensus 50.7 60 0.0013 31.5 7.1 73 273-353 67-151 (268)
19 PF00406 ADK: Adenylate kinase 49.9 33 0.00071 29.7 5.0 81 259-350 19-100 (151)
20 COG1313 PflX Uncharacterized F 46.6 21 0.00046 36.2 3.5 51 286-351 274-329 (335)
21 COG1420 HrcA Transcriptional r 45.2 15 0.00033 37.6 2.4 62 138-214 12-73 (346)
22 TIGR03853 matur_matur probable 44.7 30 0.00066 28.2 3.5 27 270-296 18-58 (77)
23 PF03428 RP-C: Replication pro 42.4 91 0.002 29.1 6.8 72 136-207 23-112 (177)
24 PF01978 TrmB: Sugar-specific 41.9 31 0.00067 26.2 3.1 30 182-211 37-66 (68)
25 PF02244 Propep_M14: Carboxype 38.9 1.1E+02 0.0024 23.3 5.9 47 334-380 6-56 (74)
26 COG3355 Predicted transcriptio 37.8 28 0.00061 30.9 2.6 50 153-202 12-77 (126)
27 PRK13824 replication initiatio 36.1 1.1E+02 0.0025 31.9 7.2 68 137-207 36-124 (404)
28 PF10678 DUF2492: Protein of u 35.2 53 0.0011 26.9 3.6 27 270-296 20-60 (78)
29 PF09713 A_thal_3526: Plant pr 34.4 58 0.0013 24.8 3.5 32 274-311 4-35 (54)
30 TIGR02425 decarb_PcaC 4-carbox 34.1 48 0.001 28.9 3.4 25 272-296 76-100 (123)
31 PRK03911 heat-inducible transc 33.8 26 0.00056 34.6 1.9 47 167-214 24-70 (260)
32 PF03444 HrcA_DNA-bdg: Winged 33.0 47 0.001 27.2 2.9 36 181-216 37-72 (78)
33 PLN02674 adenylate kinase 32.2 96 0.0021 30.2 5.5 104 259-378 54-158 (244)
34 TIGR03147 cyt_nit_nrfF cytochr 28.6 66 0.0014 28.5 3.4 25 272-296 63-87 (126)
35 PF03918 CcmH: Cytochrome C bi 28.3 54 0.0012 29.6 2.9 28 272-299 63-90 (148)
36 smart00195 DSPc Dual specifici 27.9 88 0.0019 26.5 4.0 45 270-317 89-137 (138)
37 PRK12928 lipoyl synthase; Prov 27.1 6E+02 0.013 25.2 10.3 22 272-293 174-195 (290)
38 PRK10144 formate-dependent nit 26.7 76 0.0016 28.2 3.4 25 272-296 63-87 (126)
39 COG1412 Uncharacterized protei 25.7 1.4E+02 0.0031 26.7 5.0 19 227-245 9-27 (136)
40 PF14947 HTH_45: Winged helix- 25.6 1.2E+02 0.0025 24.0 4.0 31 181-214 33-63 (77)
41 COG5111 RPC34 DNA-directed RNA 25.0 68 0.0015 31.5 3.1 86 242-350 162-268 (301)
42 PF03965 Penicillinase_R: Peni 24.5 2.9E+02 0.0063 23.1 6.5 100 8-112 6-109 (115)
43 PF13833 EF-hand_8: EF-hand do 24.1 87 0.0019 22.2 2.8 27 268-295 3-33 (54)
44 PRK11183 D-lactate dehydrogena 23.7 2.5E+02 0.0053 31.0 7.2 75 239-316 272-362 (564)
45 PF01726 LexA_DNA_bind: LexA D 23.6 66 0.0014 25.0 2.2 55 131-201 4-60 (65)
46 PF09279 EF-hand_like: Phospho 23.1 1.1E+02 0.0025 23.8 3.6 55 110-164 4-68 (83)
47 PF05184 SapB_1: Saposin-like 22.6 84 0.0018 21.0 2.4 22 274-295 13-34 (39)
48 PRK14526 adenylate kinase; Pro 22.5 1.5E+02 0.0032 28.0 4.8 75 260-345 24-99 (211)
49 PF00085 Thioredoxin: Thioredo 22.4 2E+02 0.0044 22.2 5.0 36 240-275 23-60 (103)
50 PF04720 DUF506: Protein of un 22.1 32 0.00069 33.2 0.2 41 226-272 135-176 (218)
51 PRK08508 biotin synthase; Prov 22.1 3.9E+02 0.0086 26.1 7.9 92 251-351 77-180 (279)
52 PF01316 Arg_repressor: Argini 22.0 1.3E+02 0.0027 23.9 3.6 32 179-210 33-64 (70)
53 cd00127 DSPc Dual specificity 21.7 1.4E+02 0.0031 24.9 4.2 44 270-316 92-139 (139)
54 PRK13808 adenylate kinase; Pro 21.3 3E+02 0.0065 28.2 7.0 77 259-347 23-101 (333)
55 TIGR03849 arch_ComA phosphosul 21.0 1.1E+02 0.0024 29.9 3.7 74 279-353 5-87 (237)
56 PRK00279 adk adenylate kinase; 20.5 6.7E+02 0.014 23.0 8.9 104 259-378 23-127 (215)
57 PF09170 STN1_2: CST, Suppress 20.4 81 0.0017 29.5 2.4 27 186-212 109-136 (174)
58 PLN02459 probable adenylate ki 20.1 2.6E+02 0.0056 27.6 6.1 75 259-342 52-127 (261)
No 1
>KOG3471|consensus
Probab=100.00 E-value=2.7e-134 Score=999.91 Aligned_cols=381 Identities=51% Similarity=0.893 Sum_probs=365.4
Q ss_pred CCchhHHHHHHHHhccCCCccHHHHHhhhccchhHHHHHHHHHHHHHH-------------------HHHHHHHhCCCCC
Q psy13810 1 ELSEIAKHYVIRLLFVEQPVPQAVIASWLSKTHAKEHKEATDTLTELR-------------------RNAKVALLGGGKP 61 (386)
Q Consensus 1 eLp~lak~~vmrlL~~~~~v~~~~~~~Wv~~~~~~~~~~a~~~L~~L~-------------------~~lr~aL~ggg~~ 61 (386)
+||||||+|||+|||.++|||.++++.||+.+..+++++|++.|.+|| +|+|.||+|||++
T Consensus 45 ~LPpLAkqfVm~MLf~~~pVP~a~~~~Wv~~~~tk~q~eaik~L~~L~I~~~~~~~g~~i~Lnp~fr~s~~~al~gg~~~ 124 (465)
T KOG3471|consen 45 ELPPLAKQFVMQMLFKDQPVPLADVDLWVKVEETKEQEEAIKLLKRLRIFHKQGTPGQAINLNPTFRRSLRDALTGGGKQ 124 (465)
T ss_pred hCcHHHHHHHHHHHhcCCCccHHHHHHHhhhhhHHHHHHHHHHHhheeeEeecCCCCceEEeCHHHHHHHHHHHhcCCCc
Confidence 699999999999999999999999999999999999999999999999 8999999999999
Q ss_pred CCCCc-ccccCCCCCChhHHHHHHHHhHHHHHHhHcCCCCCCCCcHHHHHHHHhcC-----CCCCccccccchhhccccc
Q psy13810 62 WSMSA-KLEVDSKARDLDFLNQYALERWECILRFMVGSQQTEGISADAVRTLFNEG-----AENPVITKDGFQFLLLETP 135 (386)
Q Consensus 62 ~~~~~-~~~~d~~~~~~~~Ld~ya~~~WE~iL~~mv~s~~~~~~s~~v~~lL~~~g-----~~~~~IT~~GFqFLL~d~~ 135 (386)
|++++ .+++|++.+++++||+||.+|||||||||||++.+..+|.++.++|+++| +..+.||+.||||||+|++
T Consensus 125 ~s~~s~~l~~~~~~r~v~~ld~ya~~rwe~ILh~mvgt~~a~~~se~v~~ll~~a~lm~~~~~~~~IT~~GFQFLL~~~~ 204 (465)
T KOG3471|consen 125 NSFGSLVLGEDKHNRDVDFLDKYASERWECILHFMVGTPEAKAVSEGVLNLLKHAGLMSRDENQIEITNAGFQFLLLDIN 204 (465)
T ss_pred ccCCCcccCCCcCcccchhhHHHHHHHHHHHHHHHhCCccccccChhHHHHHHhcCccCCCCCCceEeecchhhhhcCcH
Confidence 98744 68889999999999999999999999999999888899999999999999 3467899999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCChhhHHHHHHhhccCCCCccccCCCCCHHHHHHHHHHhHcCceeeecCCCcceeechhhhh
Q psy13810 136 AQVWYFILKYLETVESKGLDLVECLTFLFQLKFSTFGTDYSTEGMSDKLQVFLQHLREFGLVYQRKRKAGRFYPTKLALN 215 (386)
Q Consensus 136 ~QvW~lll~yl~~~e~~g~~~~~~L~flf~L~~~~~G~~Y~~~~ls~~q~~~L~~L~~~GLvy~~~~~~~~fypT~La~~ 215 (386)
+|+|+++++||+++|.+|||++|||+||||||++++|++|++++||++|+.||+||||+|||||||+|..+||||+||++
T Consensus 205 aQlW~~~LqyLk~~~~~~~dlvevL~~LfqL~~~~~G~~Ysvd~~~~~~~~~lq~Lre~GlvfQrk~k~~rfyptrla~~ 284 (465)
T KOG3471|consen 205 AQLWTLVLQYLKLFESSGMDLVEVLEFLFQLSALALGRAYSVDALTETQRILLQHLRELGLVFQRKIKILRFYPTRLAIG 284 (465)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccceeehhhHHHHHHHHHHHHhhHHHHhhhhhheecchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCcc--------cccCCCceEEEeeceeEEEecCChHHHHHHHHHHHHHhccCceEEEEeCHHHHHHHHHcCCCHHH
Q psy13810 216 MATRGTL--------KQIREPGFLIVETNFRVYAYTDSNLKVALIGLFCELMYRFPNLTVGVLTRDSVRAALRSGITAAQ 287 (386)
Q Consensus 216 l~s~~~~--------~~~~~~g~iIvETNfrvYAYT~S~LqiaiL~lF~~l~~rfPNlvvg~iTReSVr~Al~~GITA~Q 287 (386)
++++... ...++.|||||||||||||||+||||+|+|+|||++.|||||||||+|||||||+|+++||||+|
T Consensus 285 ~ss~~~~~~~~~~~~~~edd~G~iIVETN~riYAYT~S~lQiAvi~LF~~l~~rf~nlvvG~iTreSVr~Al~~GITa~Q 364 (465)
T KOG3471|consen 285 LSSDQLGAASLVHQNRNEDDVGFIIVETNYRIYAYTNSPLQIAVIALFTELTYRFPNLVVGVITRESVRRALDNGITAEQ 364 (465)
T ss_pred cchhhhhhhhhhhcccccccCceEEEEeccEEEEecCCHHHHHHHHHHHHHHhhccccceeeeeHHHHHHHHhcCCcHHH
Confidence 9886543 12344599999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCC------CCCCCChhHHHHHHHhHhhcCceeeecceeeccCCCHHHHHHHHHHHHHcCeEEEeeCCcce
Q psy13810 288 IIGFLRLHALPS------VSCPLPPVVSDQIRLWEGERERLTTSEGVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRT 361 (386)
Q Consensus 288 II~fL~~hAHp~------~~~~lP~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s~~~~~~v~~ya~~~g~llw~~~~kr~ 361 (386)
||+||++||||| .|+ +||||+|||||||.||||+.++||+||++|.|..||+.+++||+++|+|+|+|..||+
T Consensus 365 II~fLet~ahpqm~~~~~~~~-LPpTv~dQIrLWElernR~~~~~g~LYs~Fls~~df~~l~eya~~~~vLvw~d~~kr~ 443 (465)
T KOG3471|consen 365 IIHFLETHAHPQMRMLSPVPC-LPPTVVDQIRLWELERNRLRMTEGYLYSDFLSLSDFQLLLEYAREIGVLVWSDSDKRM 443 (465)
T ss_pred HHHHHHhccCchhhhcCCCCC-CCchHHhHHHHHHHhhcceecccchhHHhhhhhhhHHHHHHHHHHcCeEEEecCcceE
Confidence 999999999998 467 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCchHHHHHHHhhhcC
Q psy13810 362 VVVTKQGHSDIKKFWVNHQKG 382 (386)
Q Consensus 362 ~~V~~~~h~~vr~f~k~~~~~ 382 (386)
|||+++||++||+||||++|.
T Consensus 444 ~vV~~~Ghs~Vk~f~Kr~~k~ 464 (465)
T KOG3471|consen 444 FVVTKEGHSLVKRFWKRKSKK 464 (465)
T ss_pred EEEecCccHHHHHHHHHhhcC
Confidence 999999999999999997654
No 2
>TIGR00625 tfb2 Transcription factor tfb2. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.2e-131 Score=1001.23 Aligned_cols=380 Identities=52% Similarity=0.892 Sum_probs=361.9
Q ss_pred CCchhHHHHHHHHhccCCCccHHHHHhhhccchhHHHHHHHHHHHHHH--------------------HHHHHHHhCCCC
Q psy13810 1 ELSEIAKHYVIRLLFVEQPVPQAVIASWLSKTHAKEHKEATDTLTELR--------------------RNAKVALLGGGK 60 (386)
Q Consensus 1 eLp~lak~~vmrlL~~~~~v~~~~~~~Wv~~~~~~~~~~a~~~L~~L~--------------------~~lr~aL~ggg~ 60 (386)
+||||||||||||||+++|||.++++.|+++++++++++|+++|++|| +|||.||+|||+
T Consensus 30 ~Lp~lAK~~vmrlL~~~~pv~~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~~~~~~~~~Ln~~F~~~lr~aL~g~~~ 109 (448)
T TIGR00625 30 ELPSLAKNWVMRMLFNEQPVPLADVDLWVKKEFKKAQEESTGLLSGLHIWHTQLLPGLQGIILNPIFRQNLRIALTGGGK 109 (448)
T ss_pred cCcHHHHHHHHHHHcCCCCCCHHHHHHHhCccchHHHHHHHHHHHhCEeEEecCCCCceeEEECHHHHHHHHHHhcCCCC
Confidence 599999999999999999999999999999999999999999999999 799999999999
Q ss_pred CCCCCc-ccccCCCCCChhHHHHHHHHhHHHHHHhHcCCCCCCCCcHHHHHHHHhcC---C----CCCccccccchhhcc
Q psy13810 61 PWSMSA-KLEVDSKARDLDFLNQYALERWECILRFMVGSQQTEGISADAVRTLFNEG---A----ENPVITKDGFQFLLL 132 (386)
Q Consensus 61 ~~~~~~-~~~~d~~~~~~~~Ld~ya~~~WE~iL~~mv~s~~~~~~s~~v~~lL~~~g---~----~~~~IT~~GFqFLL~ 132 (386)
+++++. ...+|++.+++++||+||.+|||+|||||||++....+|++|+++|+++| + +++.||++|||||||
T Consensus 110 ~~s~~v~~~~~d~~~~~~~~Ld~yA~~~WE~IL~fmVgs~~~~~~s~~v~~lL~~~~Lm~~~~~~~~~~IT~~GFqFLLq 189 (448)
T TIGR00625 110 ANSFGVSQLGPDKHAVDVDSLDKYAEERWETILHFMVGTPSAKVPSEDVLQLLKQAGLMKSTEPGEPPCITSAGFQFLLQ 189 (448)
T ss_pred CCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCcCCCchHHHHHHHhCCCCcccCCCCCccCchhhHHHHcC
Confidence 997653 35567789999999999999999999999998766679999999999999 2 248999999999999
Q ss_pred ccchhHHHHHHHHHHHHHhcCCChhhHHHHHHhhccCCCCccccCCCCCHHHHHHHHHHhHcCceeeecCCCcceeechh
Q psy13810 133 ETPAQVWYFILKYLETVESKGLDLVECLTFLFQLKFSTFGTDYSTEGMSDKLQVFLQHLREFGLVYQRKRKAGRFYPTKL 212 (386)
Q Consensus 133 d~~~QvW~lll~yl~~~e~~g~~~~~~L~flf~L~~~~~G~~Y~~~~ls~~q~~~L~~L~~~GLvy~~~~~~~~fypT~L 212 (386)
|+|+|+|+||++||+++|++|||++|+|+|||+||++++|++|++++||++|++||+||+|+||||++++++++||||||
T Consensus 190 d~n~QvW~lll~YL~~~e~~g~d~vevLsFLf~Ls~l~lG~~Y~~~~Lt~tq~~~L~dL~dlGLVy~~~~~~~~fYPTrL 269 (448)
T TIGR00625 190 DINAQLWTLLLQYLKTAESRGMDLVEVLHFLFMLGFLTLGKAYSVDGLSDTQLIMLQDLREYGLVFQRKRKSRRFYPTRL 269 (448)
T ss_pred ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccCCccCCCCCCHHHHHHHHHHHHcCeEEEecCCCCcccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcccc------cCCCceEEEeeceeEEEecCChHHHHHHHHHHHHHhccCceEEEEeCHHHHHHHHHcCCCHH
Q psy13810 213 ALNMATRGTLKQ------IREPGFLIVETNFRVYAYTDSNLKVALIGLFCELMYRFPNLTVGVLTRDSVRAALRSGITAA 286 (386)
Q Consensus 213 a~~l~s~~~~~~------~~~~g~iIvETNfrvYAYT~S~LqiaiL~lF~~l~~rfPNlvvg~iTReSVr~Al~~GITA~ 286 (386)
|++|+++.++.+ ..++|+|||||||||||||+||||+|||++||++.|||||||||+||||||++|+++|||||
T Consensus 270 At~Lts~~~~l~~~~~~~~~~~g~iivEtNfrvYaYt~s~l~~~il~lF~~~~~r~pnlvvg~iTr~Sv~~A~~~GITa~ 349 (448)
T TIGR00625 270 AINLTSDTKTVSGAGGTVDDDLGFIIVETNYRLYAYTESPLQIALIALFSELLARFPNMVVGQITRESIRRALANGITAQ 349 (448)
T ss_pred HHHHhcCccccccccccccCCCceEEEEecceEEEecCCHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHHcCCCHH
Confidence 999998765311 25679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCC-----CCCCCChhHHHHHHHhHhhcCceeeecceeeccCCCHHHHHHHHHHHHHcCeEEEeeCCcce
Q psy13810 287 QIIGFLRLHALPS-----VSCPLPPVVSDQIRLWEGERERLTTSEGVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRT 361 (386)
Q Consensus 287 QII~fL~~hAHp~-----~~~~lP~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s~~~~~~v~~ya~~~g~llw~~~~kr~ 361 (386)
|||+||++||||+ .|+ |||||+|||||||.||||+++++||||++|.|++||+++++||+++|||+|+|++||+
T Consensus 350 qIi~fl~~~ahp~~~~~~~~~-lP~tv~dQi~lWe~e~~R~~~~~~~l~~~f~s~~~y~~~~~ya~~~~~l~w~~~~kr~ 428 (448)
T TIGR00625 350 QIIHYLRTHAHPQMRKEQTPV-LPPTIVDQIRLWELERDRLRFTEGVLYNDFLTQVDFELLLAYARELGVLVWENSAKRL 428 (448)
T ss_pred HHHHHHHhcCChhhhccCCCC-CChHHHHHHHHHHHHhcceEeecceeeeecCCHHHHHHHHHHHHHcCEEEEecCCceE
Confidence 9999999999999 367 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCchHHHHHHHhhhc
Q psy13810 362 VVVTKQGHSDIKKFWVNHQK 381 (386)
Q Consensus 362 ~~V~~~~h~~vr~f~k~~~~ 381 (386)
|||+++||++||+|||++|+
T Consensus 429 ~~V~~~gh~~v~~f~k~~~~ 448 (448)
T TIGR00625 429 FFITPAGHSDVKRFWKRQKH 448 (448)
T ss_pred EEEeccchHHHHHHHHhhcC
Confidence 99999999999999999875
No 3
>COG5144 TFB2 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2 [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=6.8e-113 Score=826.37 Aligned_cols=377 Identities=38% Similarity=0.599 Sum_probs=358.9
Q ss_pred CchhHHHHHHHHhccCCCccHHHHHhhhccchhHHHHHHHHHHHHHH----------------HHHHHHHhCCCCCCCCC
Q psy13810 2 LSEIAKHYVIRLLFVEQPVPQAVIASWLSKTHAKEHKEATDTLTELR----------------RNAKVALLGGGKPWSMS 65 (386)
Q Consensus 2 Lp~lak~~vmrlL~~~~~v~~~~~~~Wv~~~~~~~~~~a~~~L~~L~----------------~~lr~aL~ggg~~~~~~ 65 (386)
||++|++|||.|||.+.|||..+.+.|++...+-...+++..++++| .+|+.|||||+.+++++
T Consensus 39 lp~la~~fvm~mlfn~~~v~lld~d~wik~~~Ki~~~~~v~~~k~~hi~~~~g~~i~ln~~fk~sl~~altgg~~~nsfg 118 (447)
T COG5144 39 LPELATKFVMDMLFNSHSVSLLDEDEWIKETLKILLRIQVIGKKGNHIYLDEGLMIRLNPEFKISLMDALTGGTMENSFG 118 (447)
T ss_pred ccHHHHHHHHHHHcCCCCcchhhHHHHHhhhhHHHHHHHHhhhccceEEecCCceEEeChHHHHHHHHHhhccccccccc
Confidence 89999999999999999999999999999999999999999999999 69999999999999888
Q ss_pred cccccCCCCCChhHHHHHHHHhHHHHHHhHcCCCCCCCCcHHHHHHHHhcC-----CCCCccccccchhhccccchhHHH
Q psy13810 66 AKLEVDSKARDLDFLNQYALERWECILRFMVGSQQTEGISADAVRTLFNEG-----AENPVITKDGFQFLLLETPAQVWY 140 (386)
Q Consensus 66 ~~~~~d~~~~~~~~Ld~ya~~~WE~iL~~mv~s~~~~~~s~~v~~lL~~~g-----~~~~~IT~~GFqFLL~d~~~QvW~ 140 (386)
++.++ +.+++++||+||.++||+|||||||++...-|+..|+.+|+++| ...++||++|||||||+.|+|+|+
T Consensus 119 v~i~E--~lvsvd~ld~ys~~kwEtILhfmVgtpeakip~egVl~lLk~ggLm~~~~ne~kITn~GFqFLLq~in~QlWt 196 (447)
T COG5144 119 VCIGE--KLVSVDMLDSYSSRKWETILHFMVGTPEAKIPAEGVLELLKFGGLMGRDRNEFKITNRGFQFLLQTINEQLWT 196 (447)
T ss_pred eeecc--ceeeeehhhhhhhhhHHHHHHHHhCCccccCcchhHHHHHHhcccccCCcccceeehhHHHHHHHHHHHHHHH
Confidence 76654 58999999999999999999999999888788999999999999 346789999999999999999999
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHhhccCCCCccccCCCCCHHHHHHHHHHhHcCceeeecCCCcceeechhhhhhccCC
Q psy13810 141 FILKYLETVESKGLDLVECLTFLFQLKFSTFGTDYSTEGMSDKLQVFLQHLREFGLVYQRKRKAGRFYPTKLALNMATRG 220 (386)
Q Consensus 141 lll~yl~~~e~~g~~~~~~L~flf~L~~~~~G~~Y~~~~ls~~q~~~L~~L~~~GLvy~~~~~~~~fypT~La~~l~s~~ 220 (386)
++++||++.|...||++++|+||||||.+++|++|+++.||++|+-||+|+|++|||||+...+++||||+||+.+++..
T Consensus 197 LlL~yLK~~e~s~md~v~VLhflFmLgal~vG~aY~id~lsdtqqiml~D~R~yglv~q~~i~~~~fYpt~LA~glt~d~ 276 (447)
T COG5144 197 LLLLYLKYFEGSVMDEVAVLHFLFMLGALAVGTAYKIDALSDTQQIMLMDRRLYGLVEQLGILRKIFYPTGLAIGLTFDQ 276 (447)
T ss_pred HHHHHHHHhccccccHHHHHHHHHHhcchhhcceeeecccchHHHHHHHHHHHhhHHHHhccchhhccccccchhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred cc------cccCCCceEEEeeceeEEEecCChHHHHHHHHHHHHHhccCceEEEEeCHHHHHHHHHcCCCHHHHHHHHHh
Q psy13810 221 TL------KQIREPGFLIVETNFRVYAYTDSNLKVALIGLFCELMYRFPNLTVGVLTRDSVRAALRSGITAAQIIGFLRL 294 (386)
Q Consensus 221 ~~------~~~~~~g~iIvETNfrvYAYT~S~LqiaiL~lF~~l~~rfPNlvvg~iTReSVr~Al~~GITA~QII~fL~~ 294 (386)
-. ...++.|||||||||||||||+||||+|+++|||++..||||||+|+|||||||+|+.+||||+|||.||++
T Consensus 277 ~~~~s~qnr~edd~gfiIVETN~kiYaYtnSplqiavi~LF~nl~arf~Nlv~GiITreSirrAl~nGIta~QII~yLet 356 (447)
T COG5144 277 LFEASEQNRREDDKGFIIVETNNKIYAYTNSPLQIAVIHLFCNLTARFPNLVKGIITRESIRRALDNGITAKQIIHYLET 356 (447)
T ss_pred HHHhhhhccccccCceEEEEecceEEEecCChHHHHHHHHhhhhhcccchhhhhhccHHHHHHHHhcCccHHHHHHHHHh
Confidence 21 334557999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC----CCCCCChhHHHHHHHhHhhcCceeeecceeeccCCCHHHHHHHHHHHHHcCeEEEeeCCcceEEEeCCCch
Q psy13810 295 HALPS----VSCPLPPVVSDQIRLWEGERERLTTSEGVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHS 370 (386)
Q Consensus 295 hAHp~----~~~~lP~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s~~~~~~v~~ya~~~g~llw~~~~kr~~~V~~~~h~ 370 (386)
||||| .+. +||||+|||+|||.|+||+.+.+|+||+||.+..+|+.+.+||.+.|||+|++..||||||+.+||.
T Consensus 357 hahpqmr~~l~l-lPPtivdQI~lWele~nRi~~~pG~LysdFlt~s~y~~~~eya~~~gvLvw~d~~Krmffi~~eG~s 435 (447)
T COG5144 357 HAHPQMRKKLEL-LPPTIVDQIVLWELERNRIFMVPGYLYSDFLTLSDYQKVLEYAIRGGVLVWSDVDKRMFFIKLEGHS 435 (447)
T ss_pred ccChhhhhcCCC-CChhhhhheeeeeeccCcEEeecchHHhhhhchhhHHHHHHHHHhcCeEEeecccceEEEEEccCcH
Confidence 99999 567 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q psy13810 371 DIKKFWVNHQK 381 (386)
Q Consensus 371 ~vr~f~k~~~~ 381 (386)
.|++|.||+-+
T Consensus 436 ~v~~f~Kr~l~ 446 (447)
T COG5144 436 LVKEFVKRILK 446 (447)
T ss_pred HHHHHHHHHhc
Confidence 99999999754
No 4
>PF03849 Tfb2: Transcription factor Tfb2; InterPro: IPR004598 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p52 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=1.3e-101 Score=775.82 Aligned_cols=298 Identities=56% Similarity=0.933 Sum_probs=283.8
Q ss_pred CCchhHHHHHHHHhccCCCccHHHHHhhhccchhHHHHHHHHHHHHHH---------------------HHHHHHHhCCC
Q psy13810 1 ELSEIAKHYVIRLLFVEQPVPQAVIASWLSKTHAKEHKEATDTLTELR---------------------RNAKVALLGGG 59 (386)
Q Consensus 1 eLp~lak~~vmrlL~~~~~v~~~~~~~Wv~~~~~~~~~~a~~~L~~L~---------------------~~lr~aL~ggg 59 (386)
+||+|||||||||||+++|||++++++||++++++++++|+++|++|| +|||.||+|||
T Consensus 27 ~LP~LAK~~VmrLL~~~~pv~~~~l~~Wv~~~~~~~~~~al~~L~~L~Ii~~~~~~~~~~~~~Ln~~F~~~Lr~aL~ggg 106 (366)
T PF03849_consen 27 SLPPLAKQYVMRLLFVEQPVPQADLESWVKPESKKEHDEALKRLRSLHIIQESESPGGKQQYQLNPIFRKNLRNALTGGG 106 (366)
T ss_pred hccHHHHHHHHHHHhcCCCcCHHHHHHHhCccchHHHHHHHHHHhhCeeEeeccCCCCceeEEeCHHHHHHHHHHHhCCC
Confidence 599999999999999999999999999999999999999999999999 89999999999
Q ss_pred CCCCCCcc-cccCCCCCChhHHHHHHHHhHHHHHHhHcCCCCCCC--CcHHHHHHHHhcC-------CCCCccccccchh
Q psy13810 60 KPWSMSAK-LEVDSKARDLDFLNQYALERWECILRFMVGSQQTEG--ISADAVRTLFNEG-------AENPVITKDGFQF 129 (386)
Q Consensus 60 ~~~~~~~~-~~~d~~~~~~~~Ld~ya~~~WE~iL~~mv~s~~~~~--~s~~v~~lL~~~g-------~~~~~IT~~GFqF 129 (386)
++|.++.+ ..+|++.+++++||+||++|||+|||||||+..... ||++|+++|+++| +++..||++||||
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~Ld~yA~~rWE~IL~~mVgs~~~~~~~~s~~v~~lL~~sgLm~~~~~~~~~~IT~~GFqF 186 (366)
T PF03849_consen 107 KPWSFGVPSEEPDKKAPDVEFLDEYARERWESILHYMVGSSSSSNSSPSQDVKQLLKRSGLMKRSESGGSLKITSKGFQF 186 (366)
T ss_pred CCcccCcccccccCCCCCHHHHHHHHHHHHHHHHHHHhcCcccccCCCCHHHHHHHHHcCCCcCcCCCCCCcEehhheee
Confidence 99965543 445578999999999999999999999999987755 9999999999999 3588999999999
Q ss_pred hccccchhHHHHHHHHHHHHHhcCCChhhHHHHHHhhccCCCCccccCCCCCHHHHHHHHHHhHcCceeeecCCCcceee
Q psy13810 130 LLLETPAQVWYFILKYLETVESKGLDLVECLTFLFQLKFSTFGTDYSTEGMSDKLQVFLQHLREFGLVYQRKRKAGRFYP 209 (386)
Q Consensus 130 LL~d~~~QvW~lll~yl~~~e~~g~~~~~~L~flf~L~~~~~G~~Y~~~~ls~~q~~~L~~L~~~GLvy~~~~~~~~fyp 209 (386)
||+|+++|+|+||++||+++|++|+|++|+|+|||+||++++|++|++++||++|++||+||+|+||||++++++++|||
T Consensus 187 LL~d~~~QlW~lll~yL~~~e~~~~~~~~~l~flf~L~~~~~g~~Y~~~~ls~~q~~~L~~l~~~GLvy~~~~~~~~fyp 266 (366)
T PF03849_consen 187 LLQDTNAQLWTLLLQYLKMAEARGMDLVEVLSFLFQLSFLELGKAYSTEGLSETQKNMLQDLRELGLVYQRKRKSRRFYP 266 (366)
T ss_pred ecCChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcccccCCcCcCCCCCHHHHHHHHHHHHCCeEEEecCCCCeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhccCCcc-----------cccCCCceEEEeeceeEEEecCChHHHHHHHHHHHHHhccCceEEEEeCHHHHHHH
Q psy13810 210 TKLALNMATRGTL-----------KQIREPGFLIVETNFRVYAYTDSNLKVALIGLFCELMYRFPNLTVGVLTRDSVRAA 278 (386)
Q Consensus 210 T~La~~l~s~~~~-----------~~~~~~g~iIvETNfrvYAYT~S~LqiaiL~lF~~l~~rfPNlvvg~iTReSVr~A 278 (386)
||||++|+++++. ....++|||||||||||||||+||||||||++||++.|||||||||+|||||||+|
T Consensus 267 T~La~~l~~~~~~~~~~~~~~~~~~~~~~~g~iivETNfrvYAYT~s~l~iaiL~lF~~~~~r~pnlvvg~iTr~Sv~~A 346 (366)
T PF03849_consen 267 TRLATNLTSGSSALRSASSALDSSSSSNKEGFIIVETNFRVYAYTNSPLQIAILSLFCELKYRFPNLVVGQITRESVRRA 346 (366)
T ss_pred hHHHHHHhcCCCcccccccccccccccccCceEEEEecceEEEecCCHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHH
Confidence 9999999998864 23467899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHhcCCC
Q psy13810 279 LRSGITAAQIIGFLRLHALP 298 (386)
Q Consensus 279 l~~GITA~QII~fL~~hAHp 298 (386)
+++||||||||+||++||||
T Consensus 347 ~~~GIta~qIi~fL~~~aHp 366 (366)
T PF03849_consen 347 LKNGITADQIISFLRSHAHP 366 (366)
T ss_pred HHcCCCHHHHHHHHHhcCCC
Confidence 99999999999999999998
No 5
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=99.64 E-value=2.1e-15 Score=131.05 Aligned_cols=117 Identities=23% Similarity=0.280 Sum_probs=103.5
Q ss_pred EEEeeceeEEEecCCh-HH-HHHHHHHHHHHhccCceEEEEeCHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCCChhH
Q psy13810 231 LIVETNFRVYAYTDSN-LK-VALIGLFCELMYRFPNLTVGVLTRDSVRAALRSGITAAQIIGFLRLHALPSVSCPLPPVV 308 (386)
Q Consensus 231 iIvETNfrvYAYT~S~-Lq-iaiL~lF~~l~~rfPNlvvg~iTReSVr~Al~~GITA~QII~fL~~hAHp~~~~~lP~tV 308 (386)
+||++||.|.+++.+| .. ...|..|+++ .+..+|.+++||+.|+.+|++.|+|+++|+.||+.|+. .. ||++|
T Consensus 2 liVqpd~~I~v~~~~~~~~~~~~L~~fae~-~s~~~~~~yrlT~~Sl~~A~~~G~~~e~i~~~L~~~S~---~~-lP~~v 76 (129)
T PF13625_consen 2 LIVQPDFEILVEPGHPSPADAWFLARFAEL-KSPDTMHVYRLTPASLWRAASAGLTAEEIIEFLERYSK---NP-LPQNV 76 (129)
T ss_pred EEECCCCEEEEeCCCCCHHHHHHHHHHhcc-cccCceEEEEECHHHHHHHHHcCCCHHHHHHHHHHHcC---CC-CCHHH
Confidence 6999999999977776 44 4599999999 66799999999999999999999999999999999994 33 99999
Q ss_pred HHHHHHhHhhcCceeeecceeeccCCCHHHHHHHHHHHHHcCeE
Q psy13810 309 SDQIRLWEGERERLTTSEGVLYSQFVSQADFEKLRDYAQDLGVL 352 (386)
Q Consensus 309 ~dQIrLWe~Er~R~~~~~g~Ly~~f~s~~~~~~v~~ya~~~g~l 352 (386)
..+|+-|+...+|+++.++.+|-.+.+.+..+.+.+..+-.++.
T Consensus 77 ~~~i~~w~~~~g~v~l~~~~~~l~~~d~~~l~~l~~~~~~~~~~ 120 (129)
T PF13625_consen 77 EQSIEDWARRYGRVRLYKGAYLLECDDPELLDELLADPELAKLI 120 (129)
T ss_pred HHHHHHHHHhcCCEEEecCeEEEEECCHHHHHHHHhChhhhhhh
Confidence 99999999999999999966666699999999988877655544
No 6
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.23 E-value=0.0028 Score=70.04 Aligned_cols=105 Identities=19% Similarity=0.210 Sum_probs=83.4
Q ss_pred CceEEEeeceeEEEecCChH--HHH-HHHHHHHHHhccCceEEEEeCHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCC
Q psy13810 228 PGFLIVETNFRVYAYTDSNL--KVA-LIGLFCELMYRFPNLTVGVLTRDSVRAALRSGITAAQIIGFLRLHALPSVSCPL 304 (386)
Q Consensus 228 ~g~iIvETNfrvYAYT~S~L--qia-iL~lF~~l~~rfPNlvvg~iTReSVr~Al~~GITA~QII~fL~~hAHp~~~~~l 304 (386)
+|.|++|| .+|+ |.. -|.-|+|+.+|--+|-.++||-=|+-.|...|+++++||++|..++. .- |
T Consensus 22 d~~i~lE~--------~~p~~~~a~~fl~~~aEp~~rp~~iHeY~lT~~sl~~A~s~g~~~~~ii~~L~~~sk---~~-~ 89 (732)
T TIGR00603 22 DGHIFLES--------FSPLYKQAQDFLVAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETEDIIEVLGRLSK---TP-I 89 (732)
T ss_pred CCeEEEEe--------CCccHHHHHHHHHHhcccccChhheEEEeccHHHHHHHHHcCCCHHHHHHHHHHHhC---CC-C
Confidence 46666666 3553 222 89999999999999999999999999999999999999999999995 44 9
Q ss_pred ChhHHHHHHHhHhhcCceeee---cceeeccCCCHHHHHHHHHH
Q psy13810 305 PPVVSDQIRLWEGERERLTTS---EGVLYSQFVSQADFEKLRDY 345 (386)
Q Consensus 305 P~tV~dQIrLWe~Er~R~~~~---~g~Ly~~f~s~~~~~~v~~y 345 (386)
|++|.+.|+.+-.-.+++++. +.+ |-+-.+.+-.+.+.+.
T Consensus 90 p~~i~~~i~~~~~~ygk~klv~~~~~~-~~es~~~~~l~~l~~~ 132 (732)
T TIGR00603 90 PKGIIEFIRLCTQSYGKVKLVLKHNRY-FVESPHPEVLQRLLKD 132 (732)
T ss_pred CHHHHHHHHHHHHhcCcEEEEEcCCce-EEecCCHHHHHHHHhc
Confidence 999999999999999999882 222 3234555555555543
No 7
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=91.60 E-value=0.19 Score=33.79 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=17.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHhc
Q psy13810 274 SVRAALRSGITAAQIIGFLRLH 295 (386)
Q Consensus 274 SVr~Al~~GITA~QII~fL~~h 295 (386)
=|++|...|||.+||-.||+.+
T Consensus 8 Li~eA~~~Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 8 LIKEAKESGLSKEEIREFLEFN 29 (30)
T ss_dssp HHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 8
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=86.73 E-value=6.2 Score=37.42 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=87.8
Q ss_pred CceEEEeeceeEEEecCChHHHHHHHHHHHHHhccCceEEE---EeCHHHHHHHHHcCC-------CHHHHHHHHHhcCC
Q psy13810 228 PGFLIVETNFRVYAYTDSNLKVALIGLFCELMYRFPNLTVG---VLTRDSVRAALRSGI-------TAAQIIGFLRLHAL 297 (386)
Q Consensus 228 ~g~iIvETNfrvYAYT~S~LqiaiL~lF~~l~~rfPNlvvg---~iTReSVr~Al~~GI-------TA~QII~fL~~hAH 297 (386)
.|.=+||-.|+ +|-- +..+.++..++|++.|| ++|.|.+++|.+.|- .-+.++.+-+.+-.
T Consensus 28 gGi~~iEit~~------tp~a---~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~vi~~a~~~~i 98 (201)
T PRK06015 28 GGLPAIEITLR------TPAA---LDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQELLAAANDSDV 98 (201)
T ss_pred CCCCEEEEeCC------CccH---HHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCC
Confidence 46667887775 3332 34445567778999999 899999999999994 46899999998887
Q ss_pred CCCCCCCCh--hHHHHHHHhHhhcCceeeecceeeccCCCHHHHHHHHHHHHHcCeEEEeeCCcceEEEeCCCchHHHHH
Q psy13810 298 PSVSCPLPP--VVSDQIRLWEGERERLTTSEGVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKF 375 (386)
Q Consensus 298 p~~~~~lP~--tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s~~~~~~v~~ya~~~g~llw~~~~kr~~~V~~~~h~~vr~f 375 (386)
|- +|= |..+=..-|+.=-+-+|+.++-++-. .+|.+.+...+ +.-++|-+.-=.-+++.+|
T Consensus 99 ~~----iPG~~TptEi~~A~~~Ga~~vK~FPa~~~GG----------~~yikal~~pl---p~~~l~ptGGV~~~n~~~~ 161 (201)
T PRK06015 99 PL----LPGAATPSEVMALREEGYTVLKFFPAEQAGG----------AAFLKALSSPL---AGTFFCPTGGISLKNARDY 161 (201)
T ss_pred CE----eCCCCCHHHHHHHHHCCCCEEEECCchhhCC----------HHHHHHHHhhC---CCCcEEecCCCCHHHHHHH
Confidence 43 553 77777888999899999988765510 45666655444 3444443323333789999
Q ss_pred HHh
Q psy13810 376 WVN 378 (386)
Q Consensus 376 ~k~ 378 (386)
++.
T Consensus 162 l~a 164 (201)
T PRK06015 162 LSL 164 (201)
T ss_pred HhC
Confidence 875
No 9
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=79.18 E-value=22 Score=33.80 Aligned_cols=163 Identities=13% Similarity=0.078 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHhHcCceeeecC-CCcceeechhhhhhccCCcccccCCCceEEEeeceeEEEecCChHHHHHHHHHHHH
Q psy13810 180 MSDKLQVFLQHLREFGLVYQRKR-KAGRFYPTKLALNMATRGTLKQIREPGFLIVETNFRVYAYTDSNLKVALIGLFCEL 258 (386)
Q Consensus 180 ls~~q~~~L~~L~~~GLvy~~~~-~~~~fypT~La~~l~s~~~~~~~~~~g~iIvETNfrvYAYT~S~LqiaiL~lF~~l 258 (386)
+++++..+++.|.+.|+|-.-+. +.... -+++-.+ .+.|.=++|--++ +|-- +..+.++
T Consensus 1 ~~~~~~~~~~~l~~~~~iaV~r~~~~~~a--~~i~~al---------~~~Gi~~iEitl~------~~~~---~~~I~~l 60 (212)
T PRK05718 1 MKNWKTSIEEILRAGPVVPVIVINKLEDA--VPLAKAL---------VAGGLPVLEVTLR------TPAA---LEAIRLI 60 (212)
T ss_pred CchhHHHHHHHHHHCCEEEEEEcCCHHHH--HHHHHHH---------HHcCCCEEEEecC------CccH---HHHHHHH
Confidence 46778888899999999854321 11110 0111111 2235667887653 4433 3444556
Q ss_pred HhccCceEEE---EeCHHHHHHHHHcCC-------CHHHHHHHHHhcCCCCCCCCCCh--hHHHHHHHhHhhcCceeeec
Q psy13810 259 MYRFPNLTVG---VLTRDSVRAALRSGI-------TAAQIIGFLRLHALPSVSCPLPP--VVSDQIRLWEGERERLTTSE 326 (386)
Q Consensus 259 ~~rfPNlvvg---~iTReSVr~Al~~GI-------TA~QII~fL~~hAHp~~~~~lP~--tV~dQIrLWe~Er~R~~~~~ 326 (386)
..+||++.|| ++|.+.++.|++.|- ..+.+|.+-..+-. +. +|- |..+=...|+.--+-+++.|
T Consensus 61 ~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~~vi~~a~~~~i---~~-iPG~~TptEi~~a~~~Ga~~vKlFP 136 (212)
T PRK05718 61 AKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGLTPPLLKAAQEGPI---PL-IPGVSTPSELMLGMELGLRTFKFFP 136 (212)
T ss_pred HHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCC---CE-eCCCCCHHHHHHHHHCCCCEEEEcc
Confidence 6679999999 899999999999983 45699999888776 44 554 44664448888888888855
Q ss_pred ceeeccCCCHHHHHHHHHHHHHcCeEEEeeCCcceEEEeCCCchHHHHHHHhh
Q psy13810 327 GVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKFWVNH 379 (386)
Q Consensus 327 g~Ly~~f~s~~~~~~v~~ya~~~g~llw~~~~kr~~~V~~~~h~~vr~f~k~~ 379 (386)
+-.+- =.+|-+.+...+ +.-+.+.+.-=.-+++++|++.-
T Consensus 137 a~~~g----------g~~~lk~l~~p~---p~~~~~ptGGV~~~ni~~~l~ag 176 (212)
T PRK05718 137 AEASG----------GVKMLKALAGPF---PDVRFCPTGGISPANYRDYLALP 176 (212)
T ss_pred chhcc----------CHHHHHHHhccC---CCCeEEEeCCCCHHHHHHHHhCC
Confidence 43221 145666655444 44555544333347799998853
No 10
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=77.58 E-value=36 Score=32.76 Aligned_cols=125 Identities=14% Similarity=0.179 Sum_probs=87.6
Q ss_pred CceEEEeeceeEEEecCChHHHHHHHHHH-HHHhccCceEEE---EeCHHHHHHHHHcCC-------CHHHHHHHHHhcC
Q psy13810 228 PGFLIVETNFRVYAYTDSNLKVALIGLFC-ELMYRFPNLTVG---VLTRDSVRAALRSGI-------TAAQIIGFLRLHA 296 (386)
Q Consensus 228 ~g~iIvETNfrvYAYT~S~LqiaiL~lF~-~l~~rfPNlvvg---~iTReSVr~Al~~GI-------TA~QII~fL~~hA 296 (386)
.|.=++|-=|| +|--...+.... +...++|++.|| ++|.|.++.|++.|- .-..++++.+.+-
T Consensus 39 gGi~~iEiT~~------tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~~~~~v~~~~~~~~ 112 (222)
T PRK07114 39 GGARVFEFTNR------GDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPLFNPDIAKVCNRRK 112 (222)
T ss_pred CCCCEEEEeCC------CCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcC
Confidence 36667776665 343334443332 344679999999 899999999999994 4679999999888
Q ss_pred CCCCCCCCCh--hHHHHHHHhHhhcCceeeecceeeccCCCHHHHHHHHHHHHHcCeEEEeeCCcceEEEeCCCc----h
Q psy13810 297 LPSVSCPLPP--VVSDQIRLWEGERERLTTSEGVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGH----S 370 (386)
Q Consensus 297 Hp~~~~~lP~--tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s~~~~~~v~~ya~~~g~llw~~~~kr~~~V~~~~h----~ 370 (386)
.|- +|= |..+=..-|+.=-+-+|+.++-.+. .+|-+.+...+ +.- -|+..+|- +
T Consensus 113 i~~----iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G-----------~~~ikal~~p~---p~i--~~~ptGGV~~~~~ 172 (222)
T PRK07114 113 VPY----SPGCGSLSEIGYAEELGCEIVKLFPGSVYG-----------PGFVKAIKGPM---PWT--KIMPTGGVEPTEE 172 (222)
T ss_pred CCE----eCCCCCHHHHHHHHHCCCCEEEECcccccC-----------HHHHHHHhccC---CCC--eEEeCCCCCcchh
Confidence 754 443 6677778899889999999866554 56777766554 333 34444444 5
Q ss_pred HHHHHHHh
Q psy13810 371 DIKKFWVN 378 (386)
Q Consensus 371 ~vr~f~k~ 378 (386)
++++|++.
T Consensus 173 n~~~yl~a 180 (222)
T PRK07114 173 NLKKWFGA 180 (222)
T ss_pred cHHHHHhC
Confidence 89999874
No 11
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=77.00 E-value=4.7 Score=38.07 Aligned_cols=126 Identities=17% Similarity=0.252 Sum_probs=81.1
Q ss_pred CceEEEeeceeEEEecCChHHHHHHHHHHHHHhccCceEEE---EeCHHHHHHHHHcCC-------CHHHHHHHHHhcCC
Q psy13810 228 PGFLIVETNFRVYAYTDSNLKVALIGLFCELMYRFPNLTVG---VLTRDSVRAALRSGI-------TAAQIIGFLRLHAL 297 (386)
Q Consensus 228 ~g~iIvETNfrvYAYT~S~LqiaiL~lF~~l~~rfPNlvvg---~iTReSVr~Al~~GI-------TA~QII~fL~~hAH 297 (386)
.|.=++|--|| +|--. .....+..++|+|.|| ++|.|.+++|++.|- .-++++.+-+.|-.
T Consensus 32 gGi~~iEiT~~------t~~a~---~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~~~~~v~~~~~~~~i 102 (196)
T PF01081_consen 32 GGIRAIEITLR------TPNAL---EAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPGFDPEVIEYAREYGI 102 (196)
T ss_dssp TT--EEEEETT------STTHH---HHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS--HHHHHHHHHHTS
T ss_pred CCCCEEEEecC------CccHH---HHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCC
Confidence 46667888877 33222 3345566678999999 899999999999994 46899999999987
Q ss_pred CCCCCCCC--hhHHHHHHHhHhhcCceeeecceeeccCCCHHHHHHHHHHHHHcCeEEEeeCCcceEEEeCCCchHHHHH
Q psy13810 298 PSVSCPLP--PVVSDQIRLWEGERERLTTSEGVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKF 375 (386)
Q Consensus 298 p~~~~~lP--~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s~~~~~~v~~ya~~~g~llw~~~~kr~~~V~~~~h~~vr~f 375 (386)
| . +| -|..+=..-|+.--+-+|+.++-.+-. .+|.+++...+ +.-+.|.+.-=.-+++++|
T Consensus 103 ~---~-iPG~~TptEi~~A~~~G~~~vK~FPA~~~GG----------~~~ik~l~~p~---p~~~~~ptGGV~~~N~~~~ 165 (196)
T PF01081_consen 103 P---Y-IPGVMTPTEIMQALEAGADIVKLFPAGALGG----------PSYIKALRGPF---PDLPFMPTGGVNPDNLAEY 165 (196)
T ss_dssp E---E-EEEESSHHHHHHHHHTT-SEEEETTTTTTTH----------HHHHHHHHTTT---TT-EEEEBSS--TTTHHHH
T ss_pred c---c-cCCcCCHHHHHHHHHCCCCEEEEecchhcCc----------HHHHHHHhccC---CCCeEEEcCCCCHHHHHHH
Confidence 4 4 55 367777788999999999999876541 45666654333 3333333222234669999
Q ss_pred HHhh
Q psy13810 376 WVNH 379 (386)
Q Consensus 376 ~k~~ 379 (386)
++.-
T Consensus 166 l~ag 169 (196)
T PF01081_consen 166 LKAG 169 (196)
T ss_dssp HTST
T ss_pred HhCC
Confidence 8753
No 12
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=73.46 E-value=38 Score=32.14 Aligned_cols=126 Identities=14% Similarity=0.202 Sum_probs=86.8
Q ss_pred CceEEEeeceeEEEecCChHHHHHHHHHHHHHhccCceEEE---EeCHHHHHHHHHcCC-------CHHHHHHHHHhcCC
Q psy13810 228 PGFLIVETNFRVYAYTDSNLKVALIGLFCELMYRFPNLTVG---VLTRDSVRAALRSGI-------TAAQIIGFLRLHAL 297 (386)
Q Consensus 228 ~g~iIvETNfrvYAYT~S~LqiaiL~lF~~l~~rfPNlvvg---~iTReSVr~Al~~GI-------TA~QII~fL~~hAH 297 (386)
.|.=++|--|+ +|--.. .+.++..++|++.|| ++|.|.+++|.+.|- .-..++.+.+.+--
T Consensus 32 ~Gi~~iEit~~------t~~a~~---~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v~~~~~~~~i 102 (204)
T TIGR01182 32 GGLRVLEVTLR------TPVALD---AIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPELAKHAQDHGI 102 (204)
T ss_pred cCCCEEEEeCC------CccHHH---HHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCC
Confidence 35556776663 444433 344555678999999 899999999999994 45789999887775
Q ss_pred CCCCCCCC--hhHHHHHHHhHhhcCceeeecceeeccCCCHHHHHHHHHHHHHcCeEEEeeCCcceEEEeCCCchHHHHH
Q psy13810 298 PSVSCPLP--PVVSDQIRLWEGERERLTTSEGVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKF 375 (386)
Q Consensus 298 p~~~~~lP--~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s~~~~~~v~~ya~~~g~llw~~~~kr~~~V~~~~h~~vr~f 375 (386)
|+ +| -|..+=..-|+.--+-+|+.++-.+-. .+|-+.+...+ +.-++|-+.-=.-+++.+|
T Consensus 103 ---~~-iPG~~TptEi~~A~~~Ga~~vKlFPA~~~GG----------~~yikal~~pl---p~i~~~ptGGV~~~N~~~~ 165 (204)
T TIGR01182 103 ---PI-IPGVATPSEIMLALELGITALKLFPAEVSGG----------VKMLKALAGPF---PQVRFCPTGGINLANVRDY 165 (204)
T ss_pred ---cE-ECCCCCHHHHHHHHHCCCCEEEECCchhcCC----------HHHHHHHhccC---CCCcEEecCCCCHHHHHHH
Confidence 44 55 377777888998899999988665421 45667766555 4444444333333789999
Q ss_pred HHhh
Q psy13810 376 WVNH 379 (386)
Q Consensus 376 ~k~~ 379 (386)
++.-
T Consensus 166 l~aG 169 (204)
T TIGR01182 166 LAAP 169 (204)
T ss_pred HhCC
Confidence 8753
No 13
>KOG1123|consensus
Probab=65.87 E-value=11 Score=40.84 Aligned_cols=88 Identities=22% Similarity=0.221 Sum_probs=69.5
Q ss_pred CceEEEeeceeEEEecCChHHHHHHHHHHHHHhccCceEEEEeCHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCCChh
Q psy13810 228 PGFLIVETNFRVYAYTDSNLKVALIGLFCELMYRFPNLTVGVLTRDSVRAALRSGITAAQIIGFLRLHALPSVSCPLPPV 307 (386)
Q Consensus 228 ~g~iIvETNfrvYAYT~S~LqiaiL~lF~~l~~rfPNlvvg~iTReSVr~Al~~GITA~QII~fL~~hAHp~~~~~lP~t 307 (386)
+|.||+||==-+|-+- ...|--.+|..+|=-.+--+.||-=|+..|..-|.+-+.||+||..-+. .. ||+.
T Consensus 82 dG~IfLEsFsp~ykqA-----~DFLiaIaEPvcRP~~iHEy~lTaySLYAAVSVGL~T~dIie~L~rlSK---t~-lp~~ 152 (776)
T KOG1123|consen 82 DGHIFLETFSPLYKQA-----QDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLQTEDIIEVLDRLSK---TP-LPES 152 (776)
T ss_pred CCeEEeeecCHHHHhH-----hhhhhhhccccCChhhhhhhcchhhhhhhhhccccchHHHHHHHHHhcc---CC-CCHH
Confidence 6999999843332221 2245556788888888999999999999999999999999999999885 44 9999
Q ss_pred HHHHHHHhHhhcCceee
Q psy13810 308 VSDQIRLWEGERERLTT 324 (386)
Q Consensus 308 V~dQIrLWe~Er~R~~~ 324 (386)
|++=|++--.-.+.++.
T Consensus 153 ii~FI~~cT~sYGKVKL 169 (776)
T KOG1123|consen 153 IIEFIRACTVSYGKVKL 169 (776)
T ss_pred HHHHHHHHhhccccEEE
Confidence 99999988766665553
No 14
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=64.73 E-value=83 Score=29.93 Aligned_cols=86 Identities=21% Similarity=0.336 Sum_probs=62.1
Q ss_pred CceEEEeeceeEEEecCChHHHHHHHHHHHHHhcc---CceEEE---EeCHHHHHHHHHcCC-------CHHHHHHHHHh
Q psy13810 228 PGFLIVETNFRVYAYTDSNLKVALIGLFCELMYRF---PNLTVG---VLTRDSVRAALRSGI-------TAAQIIGFLRL 294 (386)
Q Consensus 228 ~g~iIvETNfrvYAYT~S~LqiaiL~lF~~l~~rf---PNlvvg---~iTReSVr~Al~~GI-------TA~QII~fL~~ 294 (386)
.|.=++|-=|| +|--. ..+.++..++ |++.|| ++|.+.+++|.+.|- .-+.++.+-+.
T Consensus 37 ~Gi~~iEit~~------~~~a~---~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~~~v~~~~~~ 107 (213)
T PRK06552 37 GGIKAIEVTYT------NPFAS---EVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPSFNRETAKICNL 107 (213)
T ss_pred CCCCEEEEECC------CccHH---HHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCCCCHHHHHHHHH
Confidence 46677887775 34333 3445555567 579999 899999999999994 46789999888
Q ss_pred cCCCCCCCCCCh--hHHHHHHHhHhhcCceeeec
Q psy13810 295 HALPSVSCPLPP--VVSDQIRLWEGERERLTTSE 326 (386)
Q Consensus 295 hAHp~~~~~lP~--tV~dQIrLWe~Er~R~~~~~ 326 (386)
+-.|- +|= |..+=.+.|+.--+-+++.+
T Consensus 108 ~~i~~----iPG~~T~~E~~~A~~~Gad~vklFP 137 (213)
T PRK06552 108 YQIPY----LPGCMTVTEIVTALEAGSEIVKLFP 137 (213)
T ss_pred cCCCE----ECCcCCHHHHHHHHHcCCCEEEECC
Confidence 87744 443 55555667888888888755
No 15
>PRK14529 adenylate kinase; Provisional
Probab=60.67 E-value=31 Score=33.10 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=55.9
Q ss_pred HhccCceEEEEeCHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCCChhHHHHHHHhHhhcCceeeecceeeccCCC-HH
Q psy13810 259 MYRFPNLTVGVLTRDSVRAALRSGITAAQIIGFLRLHALPSVSCPLPPVVSDQIRLWEGERERLTTSEGVLYSQFVS-QA 337 (386)
Q Consensus 259 ~~rfPNlvvg~iTReSVr~Al~~GITA~QII~fL~~hAHp~~~~~lP~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s-~~ 337 (386)
.+.++.+.+|.+.|+.+.. ..-.+++|=.|+.+.. . +|..++-++-.+.+...- ..|++++.|+- .+
T Consensus 23 ~~~~~~is~gdllr~~i~~---~t~lg~~i~~~i~~G~-----l-vpdei~~~lv~~~l~~~~---~~g~iLDGfPRt~~ 90 (223)
T PRK14529 23 KYDLAHIESGAIFREHIGG---GTELGKKAKEYIDRGD-----L-VPDDITIPMILETLKQDG---KNGWLLDGFPRNKV 90 (223)
T ss_pred HHCCCCcccchhhhhhccC---CChHHHHHHHHHhccC-----c-chHHHHHHHHHHHHhccC---CCcEEEeCCCCCHH
Confidence 4568999999999998753 2233466777775433 3 999999998888876543 78999999984 45
Q ss_pred HHHHHHHHHHHcC
Q psy13810 338 DFEKLRDYAQDLG 350 (386)
Q Consensus 338 ~~~~v~~ya~~~g 350 (386)
.++.+-+...+.|
T Consensus 91 Qa~~l~~~l~~~~ 103 (223)
T PRK14529 91 QAEKLWEALQKEG 103 (223)
T ss_pred HHHHHHHHHHhcC
Confidence 5555554444433
No 16
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=52.82 E-value=16 Score=30.50 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=22.5
Q ss_pred CCccccccchhh-----ccccchhHHHHHHHH
Q psy13810 119 NPVITKDGFQFL-----LLETPAQVWYFILKY 145 (386)
Q Consensus 119 ~~~IT~~GFqFL-----L~d~~~QvW~lll~y 145 (386)
.-.||.+||-|| -..+++-.|++|+.+
T Consensus 26 ~~GiT~~GFl~L~~lfierGR~ETtW~vLR~F 57 (89)
T PF08356_consen 26 DNGITLDGFLFLNKLFIERGRHETTWTVLRKF 57 (89)
T ss_pred CCccchhhHHHHHHHHHHhCcchHHHHHHHHc
Confidence 457999999655 889999999999864
No 17
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=51.44 E-value=6.2 Score=35.19 Aligned_cols=52 Identities=23% Similarity=0.386 Sum_probs=38.4
Q ss_pred CCceEEEeeceeEEEecCChHHHH-HHHHHHHHHhccCceEEEEeCHHHHHHHHHcCCCHHHHHHHHHhcC
Q psy13810 227 EPGFLIVETNFRVYAYTDSNLKVA-LIGLFCELMYRFPNLTVGVLTRDSVRAALRSGITAAQIIGFLRLHA 296 (386)
Q Consensus 227 ~~g~iIvETNfrvYAYT~S~Lqia-iL~lF~~l~~rfPNlvvg~iTReSVr~Al~~GITA~QII~fL~~hA 296 (386)
+...+|||.||| +.+.|| ==.-+..+...+|.+.||...| -.||+..+-..|
T Consensus 47 ~~~R~iVd~dFr------~~FeiARpt~~Y~~ll~~LP~vFVG~~~r------------L~~iV~~mc~Aa 99 (131)
T TIGR01615 47 QEMRVIIDLDFR------SEFEIARPTEEYKRLLESLPEVFVGTTER------------LRQLVRLMCDAA 99 (131)
T ss_pred CcceEEEeccch------hhceecCCCHHHHHHHHhCCcceECCHHH------------HHHHHHHHHHHH
Confidence 446899999999 777776 3445778888999999998765 336666655444
No 18
>KOG4175|consensus
Probab=50.74 E-value=60 Score=31.47 Aligned_cols=73 Identities=25% Similarity=0.333 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCCCC---C---------CCCCChhHHHHHHHhHhhcCceeeecceeeccCCCHHHHH
Q psy13810 273 DSVRAALRSGITAAQIIGFLRLHALPS---V---------SCPLPPVVSDQIRLWEGERERLTTSEGVLYSQFVSQADFE 340 (386)
Q Consensus 273 eSVr~Al~~GITA~QII~fL~~hAHp~---~---------~~~lP~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s~~~~~ 340 (386)
.+-++|+.+|+|-.+||+-++. |.|+ + |+ +---+..-|.-=. + .=.+|++.-| .-.+|.+
T Consensus 67 ~~n~~aL~ng~tl~~i~emvk~-ar~~gvt~PIiLmgYYNPI-l~yG~e~~iq~ak-~----aGanGfiivD-lPpEEa~ 138 (268)
T KOG4175|consen 67 AANRRALLNGTTLNSIIEMVKE-ARPQGVTCPIILMGYYNPI-LRYGVENYIQVAK-N----AGANGFIIVD-LPPEEAE 138 (268)
T ss_pred hhHHHHHHcCCcHHHHHHHHHH-hcccCcccceeeeecccHH-HhhhHHHHHHHHH-h----cCCCceEecc-CChHHHH
Confidence 4568999999999999999875 5566 2 22 2222222222111 1 1246788776 4578899
Q ss_pred HHHHHHHHcCeEE
Q psy13810 341 KLRDYAQDLGVLT 353 (386)
Q Consensus 341 ~v~~ya~~~g~ll 353 (386)
.++++|++.|+-+
T Consensus 139 ~~Rne~~k~gisl 151 (268)
T KOG4175|consen 139 TLRNEARKHGISL 151 (268)
T ss_pred HHHHHHHhcCceE
Confidence 9999999999765
No 19
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=49.93 E-value=33 Score=29.75 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=53.4
Q ss_pred HhccCceEEEEeCHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCCChhHHHHHHHhHhhcCceeeecceeeccCCC-HH
Q psy13810 259 MYRFPNLTVGVLTRDSVRAALRSGITAAQIIGFLRLHALPSVSCPLPPVVSDQIRLWEGERERLTTSEGVLYSQFVS-QA 337 (386)
Q Consensus 259 ~~rfPNlvvg~iTReSVr~Al~~GITA~QII~fL~~hAHp~~~~~lP~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s-~~ 337 (386)
.|.|+.+.+|-+=|+.+++ ..-.+++|-++|.+.. . ||+.++-++-.++++.. ....|++.+.|+. .+
T Consensus 19 ~~~~~~is~~~llr~~~~~---~s~~g~~i~~~l~~g~-----~-vp~~~v~~ll~~~l~~~--~~~~g~ildGfPrt~~ 87 (151)
T PF00406_consen 19 RYGLVHISVGDLLREEIKS---DSELGKQIQEYLDNGE-----L-VPDELVIELLKERLEQP--PCNRGFILDGFPRTLE 87 (151)
T ss_dssp HHTSEEEEHHHHHHHHHHT---TSHHHHHHHHHHHTTS-----S---HHHHHHHHHHHHHSG--GTTTEEEEESB-SSHH
T ss_pred hcCcceechHHHHHHHHhh---hhHHHHHHHHHHHhhc-----c-chHHHHHHHHHHHHhhh--cccceeeeeeccccHH
Confidence 4567777777666665532 2233588888888554 3 89999999988888877 6689999999985 45
Q ss_pred HHHHHHHHHHHcC
Q psy13810 338 DFEKLRDYAQDLG 350 (386)
Q Consensus 338 ~~~~v~~ya~~~g 350 (386)
.++.+.+.....+
T Consensus 88 Qa~~l~~~~~~~~ 100 (151)
T PF00406_consen 88 QAEALEEILEEEG 100 (151)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcc
Confidence 5555555333333
No 20
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=46.61 E-value=21 Score=36.16 Aligned_cols=51 Identities=22% Similarity=0.295 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCCCCCCCCChhHHHHHH----HhHh-hcCceeeecceeeccCCCHHHHHHHHHHHHHcCe
Q psy13810 286 AQIIGFLRLHALPSVSCPLPPVVSDQIR----LWEG-ERERLTTSEGVLYSQFVSQADFEKLRDYAQDLGV 351 (386)
Q Consensus 286 ~QII~fL~~hAHp~~~~~lP~tV~dQIr----LWe~-Er~R~~~~~g~Ly~~f~s~~~~~~v~~ya~~~g~ 351 (386)
.-|++|+..|. +-+++-||.+|-+ -||. |-+ ...+.++|+.+.+||+..|.
T Consensus 274 kpI~~wiae~~----g~~~~vNiM~QY~P~ykA~eypeI~-----------R~lt~eE~e~a~~~a~~~gl 329 (335)
T COG1313 274 KPILRWIAENL----GNDVRVNIMFQYRPEYKAEEYPEIN-----------RRLTREEYEKALEYAEKLGL 329 (335)
T ss_pred HHHHHHHHHhC----CCCeeEEehhhccchhhhhhchhhc-----------ccCCHHHHHHHHHHHHHcCC
Confidence 47999999998 2128899999975 6776 544 47899999999999999884
No 21
>COG1420 HrcA Transcriptional regulator of heat shock gene [Transcription]
Probab=45.16 E-value=15 Score=37.62 Aligned_cols=62 Identities=23% Similarity=0.354 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhcCCChhhHHHHHHhhccCCCCccccCCCCCHHHHHHHHHHhHcCceeeecCCCcceeechhhh
Q psy13810 138 VWYFILKYLETVESKGLDLVECLTFLFQLKFSTFGTDYSTEGMSDKLQVFLQHLREFGLVYQRKRKAGRFYPTKLAL 214 (386)
Q Consensus 138 vW~lll~yl~~~e~~g~~~~~~L~flf~L~~~~~G~~Y~~~~ls~~q~~~L~~L~~~GLvy~~~~~~~~fypT~La~ 214 (386)
++.++-.|+++.|= .|+.++-+-|..+--|-|.+|.+.+|.++|+++++-..++| -||.++.
T Consensus 12 L~aIV~~Yi~t~eP--------------VGSk~L~e~~~l~~SsATIRN~Ma~LE~~GlI~k~HtSsGR-vPT~~Gy 73 (346)
T COG1420 12 LRAIVEDYLATGEP--------------VGSKTLSEKYNLDLSSATIRNEMADLEKLGLIEKPHTSSGR-VPTDKGY 73 (346)
T ss_pred HHHHHHHHHhcCCc--------------cchHHHHHHhCCCCCchhHHHHHHHHHHCCCccCccccCCc-CCcHhHH
Confidence 47778888865541 12233334565555588999999999999999998765666 4776665
No 22
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=44.65 E-value=30 Score=28.19 Aligned_cols=27 Identities=37% Similarity=0.650 Sum_probs=23.0
Q ss_pred eCHHHHHHHHH--------------cCCCHHHHHHHHHhcC
Q psy13810 270 LTRDSVRAALR--------------SGITAAQIIGFLRLHA 296 (386)
Q Consensus 270 iTReSVr~Al~--------------~GITA~QII~fL~~hA 296 (386)
+||+|++.|+. .|.||+++|+||...-
T Consensus 18 ~t~~~L~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~kg 58 (77)
T TIGR03853 18 YTRESLKAAIEQKFGEDARFHTCSAEGMTADELLQFLLKKG 58 (77)
T ss_pred cCHHHHHHHHHHHhCCCceEeecccccCCHHHHHHHHHHCC
Confidence 58888888774 6999999999999876
No 23
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=42.36 E-value=91 Score=29.05 Aligned_cols=72 Identities=25% Similarity=0.377 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCh--hhHHHHHHhhccCC---CCc-----------cccCCCCCH-HHHHHHHHHhHcCcee
Q psy13810 136 AQVWYFILKYLETVESKGLDL--VECLTFLFQLKFST---FGT-----------DYSTEGMSD-KLQVFLQHLREFGLVY 198 (386)
Q Consensus 136 ~QvW~lll~yl~~~e~~g~~~--~~~L~flf~L~~~~---~G~-----------~Y~~~~ls~-~q~~~L~~L~~~GLvy 198 (386)
..=|.++...-+.....|.+. ..+|..|+.....+ .|. ...++++|+ +.+..|..|.|.|||.
T Consensus 23 ~~k~~ll~~l~~a~~~lgl~~~~l~vL~aLls~~~~~d~~~~~~piVfpSN~~La~r~~G~s~~tlrR~l~~LveaGLI~ 102 (177)
T PF03428_consen 23 VTKWQLLRALKEARPALGLSDRALAVLDALLSFTPPDDWEPGRRPIVFPSNAQLAERLNGMSERTLRRHLARLVEAGLIV 102 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhCCcccccCCCCceeecCHHHHHHHHcCCCHHHHHHHHHHHHHCCCee
Confidence 445777777776666677754 45555555444211 111 112346765 6678999999999996
Q ss_pred ee-cCCCcce
Q psy13810 199 QR-KRKAGRF 207 (386)
Q Consensus 199 ~~-~~~~~~f 207 (386)
.+ +.+.+||
T Consensus 103 rrDS~NgkRy 112 (177)
T PF03428_consen 103 RRDSPNGKRY 112 (177)
T ss_pred eccCCCCCcc
Confidence 54 4566665
No 24
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=41.93 E-value=31 Score=26.16 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhHcCceeeecCCCcceeech
Q psy13810 182 DKLQVFLQHLREFGLVYQRKRKAGRFYPTK 211 (386)
Q Consensus 182 ~~q~~~L~~L~~~GLvy~~~~~~~~fypT~ 211 (386)
.+-...|..|.+.|+|.....+...|.+.+
T Consensus 37 ~~v~~~L~~L~~~GlV~~~~~~~~~Y~a~~ 66 (68)
T PF01978_consen 37 STVYRALKSLEEKGLVEREEGRPKVYRAVP 66 (68)
T ss_dssp HHHHHHHHHHHHTTSEEEEEECCEEEEEE-
T ss_pred HHHHHHHHHHHHCCCEEEEcCceEEEEEeC
Confidence 356788999999999988877777777764
No 25
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=38.87 E-value=1.1e+02 Score=23.34 Aligned_cols=47 Identities=15% Similarity=0.293 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHcCeEEEeeCC----cceEEEeCCCchHHHHHHHhhh
Q psy13810 334 VSQADFEKLRDYAQDLGVLTWQNEK----KRTVVVTKQGHSDIKKFWVNHQ 380 (386)
Q Consensus 334 ~s~~~~~~v~~ya~~~g~llw~~~~----kr~~~V~~~~h~~vr~f~k~~~ 380 (386)
.+.++.+.+.+.....++=.|..+. .-.+.|+++....+.+++++..
T Consensus 6 ~t~~q~~~L~~L~~~~~~dfW~~~~~~~~~~dv~V~p~~~~~f~~~L~~~~ 56 (74)
T PF02244_consen 6 KTEEQLELLQELEQSNELDFWKEPSSVGRPVDVMVPPEKLEEFEELLKEHG 56 (74)
T ss_dssp SSHHHHHHHHHHHHHSTEEEEESSSSTTSEEEEEEEGGGHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhcccceeeecCCCCCCCeEEEEECHHHHHHHHHHHHHCC
Confidence 4677889999999889999999887 3478899998999999988754
No 26
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=37.77 E-value=28 Score=30.87 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=33.6
Q ss_pred CCChhhHHHHHHhhccCC---------CCccccCCCCC-------HHHHHHHHHHhHcCceeeecC
Q psy13810 153 GLDLVECLTFLFQLKFST---------FGTDYSTEGMS-------DKLQVFLQHLREFGLVYQRKR 202 (386)
Q Consensus 153 g~~~~~~L~flf~L~~~~---------~G~~Y~~~~ls-------~~q~~~L~~L~~~GLvy~~~~ 202 (386)
..+..++|.|++-|+-.+ .+.+-.++.++ .|....|+-|.+-|||+..+.
T Consensus 12 ~~~~~dvl~c~~GLs~~Dv~v~~~LL~~~~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 12 EFRCEDVLKCVYGLSELDVEVYKALLEENGPLTVDELAEILNRSRSTVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred cCcHHHHHHHHhCCcHHHHHHHHHHHhhcCCcCHHHHHHHHCccHHHHHHHHHHHHHcCCeeeeee
Confidence 345667777777666332 23444454443 367788999999999998773
No 27
>PRK13824 replication initiation protein RepC; Provisional
Probab=36.14 E-value=1.1e+02 Score=31.95 Aligned_cols=68 Identities=26% Similarity=0.409 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHhcCCCh--hhHHHHHHhhccCCCCcccc-----------------CCCCCH-HHHHHHHHHhHcCc
Q psy13810 137 QVWYFILKYLETVESKGLDL--VECLTFLFQLKFSTFGTDYS-----------------TEGMSD-KLQVFLQHLREFGL 196 (386)
Q Consensus 137 QvW~lll~yl~~~e~~g~~~--~~~L~flf~L~~~~~G~~Y~-----------------~~~ls~-~q~~~L~~L~~~GL 196 (386)
.=|.++..-.+.....|... ..+|..|+ +| .+..+++ +.++++ +.+..|..|.|.||
T Consensus 36 ~Kw~l~r~l~~a~~~lGl~~~~l~vL~aLl--sf-~p~~~~~~~~~~IVfpSN~~La~r~~Gms~~tlrRhla~LveaGL 112 (404)
T PRK13824 36 DKWKLFRDLCEARALLGVSDRALAVLNALL--SF-YPETELSEEAGLVVFPSNAQLSLRAHGMAGATLRRHLAALVEAGL 112 (404)
T ss_pred CHHHHHHHHHHHHHhcCCChhHHHHHHHHH--hh-CCcccccCCCCceechhHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Confidence 56999888888777888765 34444443 33 3333332 245665 56789999999999
Q ss_pred eeee-cCCCcce
Q psy13810 197 VYQR-KRKAGRF 207 (386)
Q Consensus 197 vy~~-~~~~~~f 207 (386)
|-.+ +.+.+||
T Consensus 113 I~rrDSpNGKRy 124 (404)
T PRK13824 113 IIRRDSPNGKRY 124 (404)
T ss_pred eEeecCCCCccc
Confidence 9544 4566665
No 28
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=35.24 E-value=53 Score=26.86 Aligned_cols=27 Identities=30% Similarity=0.607 Sum_probs=22.8
Q ss_pred eCHHHHHHHHH--------------cCCCHHHHHHHHHhcC
Q psy13810 270 LTRDSVRAALR--------------SGITAAQIIGFLRLHA 296 (386)
Q Consensus 270 iTReSVr~Al~--------------~GITA~QII~fL~~hA 296 (386)
+||+|+.+|+. .|.||+++|.||...-
T Consensus 20 ~t~~~L~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~rg 60 (78)
T PF10678_consen 20 YTKEELKAAIIEKFGEDARFHTCSAEGMTADELVDFLEERG 60 (78)
T ss_pred cCHHHHHHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHcC
Confidence 58888887774 6999999999999776
No 29
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=34.40 E-value=58 Score=24.83 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=26.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCCCCCCCCChhHHHH
Q psy13810 274 SVRAALRSGITAAQIIGFLRLHALPSVSCPLPPVVSDQ 311 (386)
Q Consensus 274 SVr~Al~~GITA~QII~fL~~hAHp~~~~~lP~tV~dQ 311 (386)
-|.+.+....|-++++..|..||. |+|.++.-
T Consensus 4 lIErCl~~yMsk~E~v~~L~~~a~------I~P~~T~~ 35 (54)
T PF09713_consen 4 LIERCLQLYMSKEECVRALQKQAN------IEPVFTST 35 (54)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHcC------CChHHHHH
Confidence 477899999999999999999995 77776643
No 30
>TIGR02425 decarb_PcaC 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus.
Probab=34.13 E-value=48 Score=28.88 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcC
Q psy13810 272 RDSVRAALRSGITAAQIIGFLRLHA 296 (386)
Q Consensus 272 ReSVr~Al~~GITA~QII~fL~~hA 296 (386)
+.-++.|+++|+|.+||..-|..-+
T Consensus 76 ~~h~~~Al~~G~T~~ei~Evl~q~~ 100 (123)
T TIGR02425 76 AMHVRATANTGVTEDDIKEVLLHVA 100 (123)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4567899999999999999887655
No 31
>PRK03911 heat-inducible transcription repressor; Provisional
Probab=33.80 E-value=26 Score=34.63 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=37.4
Q ss_pred ccCCCCccccCCCCCHHHHHHHHHHhHcCceeeecCCCcceeechhhh
Q psy13810 167 KFSTFGTDYSTEGMSDKLQVFLQHLREFGLVYQRKRKAGRFYPTKLAL 214 (386)
Q Consensus 167 ~~~~~G~~Y~~~~ls~~q~~~L~~L~~~GLvy~~~~~~~~fypT~La~ 214 (386)
|+.++.+.|..+--+-|.++.+.+|.+.|++.++-..++| .||..+.
T Consensus 24 GSk~L~~~~~l~~SsATIRn~m~~LE~~G~L~qpHtSsGR-IPT~~gy 70 (260)
T PRK03911 24 GSNELKSLMNLKISAATIRNYFKKLSDEGLLTQLHISGGR-IPTIKAM 70 (260)
T ss_pred CHHHHHHHcCCCCCcHHHHHHHHHHHHCcCccCCcCCCCc-CCCHHHH
Confidence 3445556677777789999999999999999998766666 5887775
No 32
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=32.97 E-value=47 Score=27.16 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHhHcCceeeecCCCcceeechhhhhh
Q psy13810 181 SDKLQVFLQHLREFGLVYQRKRKAGRFYPTKLALNM 216 (386)
Q Consensus 181 s~~q~~~L~~L~~~GLvy~~~~~~~~fypT~La~~l 216 (386)
+.|.++.+++|.++|||......+.-+-||.-|..+
T Consensus 37 ~aTIRN~M~~Le~lGlve~~p~~s~GriPT~~aYr~ 72 (78)
T PF03444_consen 37 PATIRNEMADLEELGLVESQPHPSGGRIPTDKAYRA 72 (78)
T ss_pred hHHHHHHHHHHHHCCCccCCCCCCCCCCcCHHHHHH
Confidence 679999999999999997433334445788777643
No 33
>PLN02674 adenylate kinase
Probab=32.22 E-value=96 Score=30.19 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=64.0
Q ss_pred HhccCceEEEEeCHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCCChhHHHHHHHhHhhcCceeeecceeeccCCC-HH
Q psy13810 259 MYRFPNLTVGVLTRDSVRAALRSGITAAQIIGFLRLHALPSVSCPLPPVVSDQIRLWEGERERLTTSEGVLYSQFVS-QA 337 (386)
Q Consensus 259 ~~rfPNlvvg~iTReSVr~Al~~GITA~QII~fL~~hAHp~~~~~lP~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s-~~ 337 (386)
.|-++.+.+|-|=|+.|+..=..| .+|-+++.+- -. +|+.++.++-..++... ....|++++.|+- ..
T Consensus 54 ~~~~~his~GdllR~~i~~~s~~g---~~i~~~~~~G-----~l-vpd~iv~~lv~~~l~~~--~~~~g~ilDGfPRt~~ 122 (244)
T PLN02674 54 EYCLCHLATGDMLRAAVAAKTPLG---IKAKEAMDKG-----EL-VSDDLVVGIIDEAMKKP--SCQKGFILDGFPRTVV 122 (244)
T ss_pred HcCCcEEchhHHHHHHHhccChhh---HHHHHHHHcC-----Cc-cCHHHHHHHHHHHHhCc--CcCCcEEEeCCCCCHH
Confidence 567899999988777775444444 3455555532 23 99999998887776543 3458999999984 55
Q ss_pred HHHHHHHHHHHcCeEEEeeCCcceEEEeCCCchHHHHHHHh
Q psy13810 338 DFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKFWVN 378 (386)
Q Consensus 338 ~~~~v~~ya~~~g~llw~~~~kr~~~V~~~~h~~vr~f~k~ 378 (386)
..+.+.+.....|+-+ ...++..-....-+++...|
T Consensus 123 Qa~~l~~~l~~~~~~~-----d~vi~l~v~~~~l~~Rl~gR 158 (244)
T PLN02674 123 QAQKLDEMLAKQGAKI-----DKVLNFAIDDAILEERITGR 158 (244)
T ss_pred HHHHHHHHHHhcCCCC-----CEEEEEECCHHHHHHHHhcc
Confidence 5566655655555321 23344444323334555444
No 34
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=28.64 E-value=66 Score=28.53 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcC
Q psy13810 272 RDSVRAALRSGITAAQIIGFLRLHA 296 (386)
Q Consensus 272 ReSVr~Al~~GITA~QII~fL~~hA 296 (386)
|.-|++-+..|-|-+||++|+...-
T Consensus 63 R~~Vr~~i~~G~Sd~eI~~~~v~RY 87 (126)
T TIGR03147 63 RHEVYSMVNEGKSNQQIIDFMTARF 87 (126)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 6789999999999999999998765
No 35
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=28.30 E-value=54 Score=29.64 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCC
Q psy13810 272 RDSVRAALRSGITAAQIIGFLRLHALPS 299 (386)
Q Consensus 272 ReSVr~Al~~GITA~QII~fL~~hAHp~ 299 (386)
|+-|++-+..|-|.+||++|+.++-=+.
T Consensus 63 R~~I~~~l~~G~s~~eI~~~~v~rYG~~ 90 (148)
T PF03918_consen 63 RREIREMLAEGKSDEEIIDYFVERYGEF 90 (148)
T ss_dssp HHHHHHHHHHT--HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCcc
Confidence 6778899999999999999999876433
No 36
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=27.91 E-value=88 Score=26.47 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=32.6
Q ss_pred eCHHHHHHHH----HcCCCHHHHHHHHHhcCCCCCCCCCChhHHHHHHHhHh
Q psy13810 270 LTRDSVRAAL----RSGITAAQIIGFLRLHALPSVSCPLPPVVSDQIRLWEG 317 (386)
Q Consensus 270 iTReSVr~Al----~~GITA~QII~fL~~hAHp~~~~~lP~tV~dQIrLWe~ 317 (386)
++|...--|. ..|+++++.+.|+++ ++|. +..-+...+|++.||.
T Consensus 89 ~~RS~~v~~~yl~~~~~~~~~~A~~~v~~-~R~~--~~p~~~~~~qL~~~e~ 137 (138)
T smart00195 89 VSRSATLIIAYLMKYRNLSLNDAYDFVKD-RRPI--ISPNFGFLRQLIEYER 137 (138)
T ss_pred CchHHHHHHHHHHHHhCCCHHHHHHHHHH-HCCc--cCCCHhHHHHHHHHhh
Confidence 5677764443 579999999999976 4442 2123599999999985
No 37
>PRK12928 lipoyl synthase; Provisional
Probab=27.10 E-value=6e+02 Score=25.23 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH
Q psy13810 272 RDSVRAALRSGITAAQIIGFLR 293 (386)
Q Consensus 272 ReSVr~Al~~GITA~QII~fL~ 293 (386)
=+.|.+.+..|.|.++.+..++
T Consensus 174 ~~~vl~~m~r~~t~e~~le~l~ 195 (290)
T PRK12928 174 VPRLQKAVRRGADYQRSLDLLA 195 (290)
T ss_pred cHHHHHHhCCCCCHHHHHHHHH
Confidence 3677777777777777776665
No 38
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=26.69 E-value=76 Score=28.18 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcC
Q psy13810 272 RDSVRAALRSGITAAQIIGFLRLHA 296 (386)
Q Consensus 272 ReSVr~Al~~GITA~QII~fL~~hA 296 (386)
|.-|++-+..|-|-+||++|+...-
T Consensus 63 R~~Vr~~i~~G~sd~eI~~~~v~RY 87 (126)
T PRK10144 63 RHQVYSMVAEGKSEVEIIGWMTERY 87 (126)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 6778999999999999999998765
No 39
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=25.67 E-value=1.4e+02 Score=26.73 Aligned_cols=19 Identities=37% Similarity=0.655 Sum_probs=15.5
Q ss_pred CCceEEEeeceeEEEecCC
Q psy13810 227 EPGFLIVETNFRVYAYTDS 245 (386)
Q Consensus 227 ~~g~iIvETNfrvYAYT~S 245 (386)
..-+|+|+|||=+|.|..-
T Consensus 9 ~~~~VlvDTNfl~~~~q~~ 27 (136)
T COG1412 9 KPYQVLVDTNFLLYPYQFK 27 (136)
T ss_pred CceEEEecchHHHHHHHcc
Confidence 4567999999999888764
No 40
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=25.56 E-value=1.2e+02 Score=23.99 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHhHcCceeeecCCCcceeechhhh
Q psy13810 181 SDKLQVFLQHLREFGLVYQRKRKAGRFYPTKLAL 214 (386)
Q Consensus 181 s~~q~~~L~~L~~~GLvy~~~~~~~~fypT~La~ 214 (386)
..+-...|..|.+.|||-. +...|..|+-..
T Consensus 33 ~~~~~~yL~~L~~~gLI~~---~~~~Y~lTekG~ 63 (77)
T PF14947_consen 33 YSTLKKYLKELEEKGLIKK---KDGKYRLTEKGK 63 (77)
T ss_dssp HHHHHHHHHHHHHTTSEEE---ETTEEEE-HHHH
T ss_pred HHHHHHHHHHHHHCcCeeC---CCCEEEECccHH
Confidence 4577889999999999922 456777886543
No 41
>COG5111 RPC34 DNA-directed RNA polymerase III, subunit C34 [Transcription]
Probab=25.04 E-value=68 Score=31.54 Aligned_cols=86 Identities=24% Similarity=0.470 Sum_probs=49.3
Q ss_pred ecCChHHHHHHHHHHHHHhcc------CceEEEEeCHHHHHHHHHcCC------------CHHHHHHHHHhcCCCCCCCC
Q psy13810 242 YTDSNLKVALIGLFCELMYRF------PNLTVGVLTRDSVRAALRSGI------------TAAQIIGFLRLHALPSVSCP 303 (386)
Q Consensus 242 YT~S~LqiaiL~lF~~l~~rf------PNlvvg~iTReSVr~Al~~GI------------TA~QII~fL~~hAHp~~~~~ 303 (386)
+||..|++..++-.-++.+|| |+ .-+..|- |++||..|+++----.
T Consensus 162 FtD~elDvEfi~~ll~ii~rf~~~n~fp~------------kn~~~gpnv~~~P~y~~ypT~~~I~n~vr~~ni~~---- 225 (301)
T COG5111 162 FTDNELDVEFIARLLEIIERFLEKNLFPR------------KNFEEGPNVFYAPKYEDYPTLEDIMNYVRNVNILS---- 225 (301)
T ss_pred cccCcccHHHHHHHHHHHHHHHHhccCCc------------cchhcCCccccCCccCCCccHHHHHHHHHhceeee----
Confidence 578888887666666666655 54 3444554 9999999999755322
Q ss_pred CChhHHHHHHHhH---hhcCceeeecceeeccCCCHHHHHHHHHHHHHcC
Q psy13810 304 LPPVVSDQIRLWE---GERERLTTSEGVLYSQFVSQADFEKLRDYAQDLG 350 (386)
Q Consensus 304 lP~tV~dQIrLWe---~Er~R~~~~~g~Ly~~f~s~~~~~~v~~ya~~~g 350 (386)
||-+..+=+-|=+ .+..==+.++|..|+ |..+..|+.+.|
T Consensus 226 v~L~l~n~~sL~dvLvyDgKvEK~~~g~~yR-------~~~~~~~~~nq~ 268 (301)
T COG5111 226 VPLRLDNLESLADVLVYDGKVEKLHSGPIYR-------YRAFKPYAKNQG 268 (301)
T ss_pred ccccHHHHHHHhHheeecCeeeeeccCccee-------eeecChhhhccc
Confidence 4444333333322 122222445566565 445556666655
No 42
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=24.47 E-value=2.9e+02 Score=23.12 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=52.3
Q ss_pred HHHHHHhccCCCccHHHHHhhhccchhHHHHHHHHHHHHHHH-HH-HHHHhCCCCCCCCCcccccCCC--CCChhHHHHH
Q psy13810 8 HYVIRLLFVEQPVPQAVIASWLSKTHAKEHKEATDTLTELRR-NA-KVALLGGGKPWSMSAKLEVDSK--ARDLDFLNQY 83 (386)
Q Consensus 8 ~~vmrlL~~~~~v~~~~~~~Wv~~~~~~~~~~a~~~L~~L~~-~l-r~aL~ggg~~~~~~~~~~~d~~--~~~~~~Ld~y 83 (386)
.-||++||-.+|++..++..=+..+..-........|.+|.+ ++ ...-.| .... ..+..+.+.. ....++++++
T Consensus 6 ~~IM~~lW~~~~~t~~eI~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~~~~~g-r~~~-Y~p~is~~e~~~~~~~~~l~~~ 83 (115)
T PF03965_consen 6 LEIMEILWESGEATVREIHEALPEERSWAYSTVQTLLNRLVEKGFLTREKIG-RAYV-YSPLISREEYLAQELRQFLDRL 83 (115)
T ss_dssp HHHHHHHHHHSSEEHHHHHHHHCTTSS--HHHHHHHHHHHHHTTSEEEEEET-TCEE-EEESSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHhccccchhHHHHHHHHHHhCCceeEeecC-CceE-EEeCCcHHHHHHHHHHHHHHHH
Confidence 469999999889999998877776644445555666666662 10 000001 1110 0000111000 1113467777
Q ss_pred HHHhHHHHHHhHcCCCCCCCCcHHHHHHH
Q psy13810 84 ALERWECILRFMVGSQQTEGISADAVRTL 112 (386)
Q Consensus 84 a~~~WE~iL~~mv~s~~~~~~s~~v~~lL 112 (386)
+......++..++... ..|++-++-|
T Consensus 84 ~~gs~~~l~~~l~~~~---~ls~~el~~L 109 (115)
T PF03965_consen 84 FDGSIPQLVAALVESE---ELSPEELEEL 109 (115)
T ss_dssp STTHHHHHHHHHHHCT----S-HHHHHHH
T ss_pred hCCCHHHHHHHHHhcC---CCCHHHHHHH
Confidence 7777777777777654 4455544444
No 43
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=24.10 E-value=87 Score=22.21 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=18.7
Q ss_pred EEeCHHHHHHHHHc-C---CCHHHHHHHHHhc
Q psy13810 268 GVLTRDSVRAALRS-G---ITAAQIIGFLRLH 295 (386)
Q Consensus 268 g~iTReSVr~Al~~-G---ITA~QII~fL~~h 295 (386)
|.||++.++.|+.. | +|.++ +.-|-..
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e-~~~l~~~ 33 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEE-VDRLFRE 33 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHH-HHHHHHH
T ss_pred CEECHHHHHHHHHHhCCCCCCHHH-HHHHHHh
Confidence 78999999999965 5 55666 3333333
No 44
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=23.75 E-value=2.5e+02 Score=30.98 Aligned_cols=75 Identities=25% Similarity=0.336 Sum_probs=59.7
Q ss_pred EEEecCChHHHHHHHHHHHHHhccCceEEE--EeCHHHHHHHHHcCCCHHHHHHHHHhcCCCC--------------CCC
Q psy13810 239 VYAYTDSNLKVALIGLFCELMYRFPNLTVG--VLTRDSVRAALRSGITAAQIIGFLRLHALPS--------------VSC 302 (386)
Q Consensus 239 vYAYT~S~LqiaiL~lF~~l~~rfPNlvvg--~iTReSVr~Al~~GITA~QII~fL~~hAHp~--------------~~~ 302 (386)
.|+.|+++-.. ..+..++...|+++.++ .|.|+.+.-|-+.|=.-=-.|.+|-+..-|. .|+
T Consensus 272 f~ig~n~~~~~--~~~rr~il~~~~~lP~a~Eym~r~~~d~~~~ygkd~~~~i~~~gt~~~p~~f~~k~~~d~~~~~~~~ 349 (564)
T PRK11183 272 FYIGTNDPAVL--TEIRRHILANFKNLPVAGEYMHRDAFDIAEKYGKDTFLMIDKLGTDKLPKLFALKGRVDAFLEKVPF 349 (564)
T ss_pred EEEeCCCHHHH--HHHHHHHHHhCCCCceeEeecCHHHHHHHHHhCCccEEehhhhCchhHHHHHhhHHHHHHHHHhcCC
Confidence 57888887543 45556677778888887 7999999999999876556788887777776 567
Q ss_pred CCChhHHHHHHHhH
Q psy13810 303 PLPPVVSDQIRLWE 316 (386)
Q Consensus 303 ~lP~tV~dQIrLWe 316 (386)
+|++++|.+..|-
T Consensus 350 -~~~~~~d~~~q~~ 362 (564)
T PRK11183 350 -LPPHFTDRVMQAL 362 (564)
T ss_pred -CCCCCcHHHHHHH
Confidence 9999999999885
No 45
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=23.57 E-value=66 Score=24.96 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=35.2
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCCh--hhHHHHHHhhccCCCCccccCCCCCHHHHHHHHHHhHcCceeeec
Q psy13810 131 LLETPAQVWYFILKYLETVESKGLDL--VECLTFLFQLKFSTFGTDYSTEGMSDKLQVFLQHLREFGLVYQRK 201 (386)
Q Consensus 131 L~d~~~QvW~lll~yl~~~e~~g~~~--~~~L~flf~L~~~~~G~~Y~~~~ls~~q~~~L~~L~~~GLvy~~~ 201 (386)
|-++..+|..++..|+ ++.|..+ -|+-. .+.+. -+.+-...|..|.+-|+|-...
T Consensus 4 LT~rQ~~vL~~I~~~~---~~~G~~Pt~rEIa~------------~~g~~-S~~tv~~~L~~Le~kG~I~r~~ 60 (65)
T PF01726_consen 4 LTERQKEVLEFIREYI---EENGYPPTVREIAE------------ALGLK-STSTVQRHLKALERKGYIRRDP 60 (65)
T ss_dssp --HHHHHHHHHHHHHH---HHHSS---HHHHHH------------HHTSS-SHHHHHHHHHHHHHTTSEEEGC
T ss_pred CCHHHHHHHHHHHHHH---HHcCCCCCHHHHHH------------HhCCC-ChHHHHHHHHHHHHCcCccCCC
Confidence 4466788888888888 5666543 33322 22222 2568889999999999996544
No 46
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=23.10 E-value=1.1e+02 Score=23.82 Aligned_cols=55 Identities=24% Similarity=0.259 Sum_probs=35.0
Q ss_pred HHHHhcCCCCCccccccc-hhhcc------ccchhHHHHHHHHHHHHH---hcCCChhhHHHHHH
Q psy13810 110 RTLFNEGAENPVITKDGF-QFLLL------ETPAQVWYFILKYLETVE---SKGLDLVECLTFLF 164 (386)
Q Consensus 110 ~lL~~~g~~~~~IT~~GF-qFLL~------d~~~QvW~lll~yl~~~e---~~g~~~~~~L~flf 164 (386)
.++....++...||...| .||-. -..+|+..++..|..... +.++++.+..+||+
T Consensus 4 ~if~~ys~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 4 EIFRKYSSDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHCTTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHhCCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 344333333445677777 66631 157888999999976553 44567777777775
No 47
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=22.60 E-value=84 Score=21.04 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHhc
Q psy13810 274 SVRAALRSGITAAQIIGFLRLH 295 (386)
Q Consensus 274 SVr~Al~~GITA~QII~fL~~h 295 (386)
-++..+.++.|-++|+++|..-
T Consensus 13 ~i~~~l~~~~t~~~I~~~l~~~ 34 (39)
T PF05184_consen 13 EIEKLLKNNKTEEEIKKALEKA 34 (39)
T ss_dssp HHHHHHHSTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCccHHHHHHHHHHH
Confidence 4678899999999999999863
No 48
>PRK14526 adenylate kinase; Provisional
Probab=22.49 E-value=1.5e+02 Score=27.98 Aligned_cols=75 Identities=13% Similarity=0.243 Sum_probs=48.3
Q ss_pred hccCceEEEEeCHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCCChhHHHHHHHhHhhcCceeeecceeeccCC-CHHH
Q psy13810 260 YRFPNLTVGVLTRDSVRAALRSGITAAQIIGFLRLHALPSVSCPLPPVVSDQIRLWEGERERLTTSEGVLYSQFV-SQAD 338 (386)
Q Consensus 260 ~rfPNlvvg~iTReSVr~Al~~GITA~QII~fL~~hAHp~~~~~lP~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~-s~~~ 338 (386)
+.++.+.+|.+-|+.+...-..| .+|-.++....- +|+.++.++-.-.++. .....|++++.|+ +.+.
T Consensus 24 ~~~~~is~G~llr~~~~~~t~~g---~~i~~~~~~g~l------vpd~~~~~lv~~~l~~--~~~~~g~ilDGfPR~~~Q 92 (211)
T PRK14526 24 LNYYHISTGDLFRENILNSTPLG---KEIKQIVENGQL------VPDSITIKIVEDKINT--IKNNDNFILDGFPRNINQ 92 (211)
T ss_pred hCCceeecChHHHHhcccCChhh---HHHHHHHHcCcc------CChHHHHHHHHHHHhc--ccccCcEEEECCCCCHHH
Confidence 34788888988777665433333 456666665543 8999986665544432 2346899999996 5555
Q ss_pred HHHHHHH
Q psy13810 339 FEKLRDY 345 (386)
Q Consensus 339 ~~~v~~y 345 (386)
.+.+.++
T Consensus 93 a~~l~~~ 99 (211)
T PRK14526 93 AKALDKF 99 (211)
T ss_pred HHHHHHh
Confidence 5665554
No 49
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=22.39 E-value=2e+02 Score=22.15 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=23.8
Q ss_pred EEecCChHHHH-HHHHHHHHHhccC-ceEEEEeCHHHH
Q psy13810 240 YAYTDSNLKVA-LIGLFCELMYRFP-NLTVGVLTRDSV 275 (386)
Q Consensus 240 YAYT~S~Lqia-iL~lF~~l~~rfP-Nlvvg~iTReSV 275 (386)
|-|++.--++. +...|.++...++ ++.++.+.-+.-
T Consensus 23 ~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~ 60 (103)
T PF00085_consen 23 YFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN 60 (103)
T ss_dssp EEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS
T ss_pred EEeCCCCCccccccceecccccccccccccchhhhhcc
Confidence 44555444444 6668888888787 788887766544
No 50
>PF04720 DUF506: Protein of unknown function (DUF506) ; InterPro: IPR006502 This family of uncharacterised plant proteins are defined by a region found toward the C terminus. This region is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=22.15 E-value=32 Score=33.16 Aligned_cols=41 Identities=27% Similarity=0.464 Sum_probs=32.0
Q ss_pred CCCceEEEeeceeEEEecCChHHHH-HHHHHHHHHhccCceEEEEeCH
Q psy13810 226 REPGFLIVETNFRVYAYTDSNLKVA-LIGLFCELMYRFPNLTVGVLTR 272 (386)
Q Consensus 226 ~~~g~iIvETNfrvYAYT~S~Lqia-iL~lF~~l~~rfPNlvvg~iTR 272 (386)
...-.+|||+||| +.+.|| -=.-|..+...+|...||...|
T Consensus 135 ~~~~r~IVd~~fr------~~FeiArpt~~Y~~ll~~lP~vfVG~~~~ 176 (218)
T PF04720_consen 135 GKSERYIVDPDFR------SQFEIARPTPEYAALLAALPEVFVGTPER 176 (218)
T ss_pred CcceeEEEecchH------hCeeecCCCHHHHHHHHhCCCceEcCHHH
Confidence 3457899999999 666666 5566788888999999996544
No 51
>PRK08508 biotin synthase; Provisional
Probab=22.08 E-value=3.9e+02 Score=26.06 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=64.7
Q ss_pred HHHHHHHHHhccCceEE----EEeCHHHHHHHHHcCC--------CHHHHHHHHHhcCCCCCCCCCChhHHHHHHHhHhh
Q psy13810 251 LIGLFCELMYRFPNLTV----GVLTRDSVRAALRSGI--------TAAQIIGFLRLHALPSVSCPLPPVVSDQIRLWEGE 318 (386)
Q Consensus 251 iL~lF~~l~~rfPNlvv----g~iTReSVr~Al~~GI--------TA~QII~fL~~hAHp~~~~~lP~tV~dQIrLWe~E 318 (386)
++.++..++.++|++.+ |.+|+|.+++=.+.|+ |++++ +.. - ++..=+..+.+.|+.. .+
T Consensus 77 ~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~---~~~-i---~~~~~~~~~l~~i~~a-~~ 148 (279)
T PRK08508 77 VAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEF---FPK-I---CTTHTWEERFQTCENA-KE 148 (279)
T ss_pred HHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHH---hcC-C---CCCCCHHHHHHHHHHH-HH
Confidence 67778888888898644 8899999988888888 44332 111 1 1111345566677664 45
Q ss_pred cCceeeecceeeccCCCHHHHHHHHHHHHHcCe
Q psy13810 319 RERLTTSEGVLYSQFVSQADFEKLRDYAQDLGV 351 (386)
Q Consensus 319 r~R~~~~~g~Ly~~f~s~~~~~~v~~ya~~~g~ 351 (386)
.+ +.++.|.++--=.+.+|-.....+.++++.
T Consensus 149 ~G-i~v~sg~I~GlGEt~ed~~~~l~~lr~L~~ 180 (279)
T PRK08508 149 AG-LGLCSGGIFGLGESWEDRISFLKSLASLSP 180 (279)
T ss_pred cC-CeecceeEEecCCCHHHHHHHHHHHHcCCC
Confidence 54 888999999877788888888888888874
No 52
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=22.05 E-value=1.3e+02 Score=23.95 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHhHcCceeeecCCCcceeec
Q psy13810 179 GMSDKLQVFLQHLREFGLVYQRKRKAGRFYPT 210 (386)
Q Consensus 179 ~ls~~q~~~L~~L~~~GLvy~~~~~~~~fypT 210 (386)
+.+-+|-++=+||+++|+|..+..++...|--
T Consensus 33 Gi~vTQaTiSRDLkeL~~vKv~~~~g~~~Y~l 64 (70)
T PF01316_consen 33 GIEVTQATISRDLKELGAVKVPDGNGKYRYVL 64 (70)
T ss_dssp T-T--HHHHHHHHHHHT-EEEECTTSSEEEE-
T ss_pred CCCcchhHHHHHHHHcCcEEeeCCCCCEEEEe
Confidence 45568899999999999999886666666643
No 53
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=21.72 E-value=1.4e+02 Score=24.87 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=31.2
Q ss_pred eCHHHHHHH----HHcCCCHHHHHHHHHhcCCCCCCCCCChhHHHHHHHhH
Q psy13810 270 LTRDSVRAA----LRSGITAAQIIGFLRLHALPSVSCPLPPVVSDQIRLWE 316 (386)
Q Consensus 270 iTReSVr~A----l~~GITA~QII~fL~~hAHp~~~~~lP~tV~dQIrLWe 316 (386)
+.|...--| ...|++.++.+.++++.- |. +..-++...|++.||
T Consensus 92 ~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r-~~--~~~~~~~~~~l~~~~ 139 (139)
T cd00127 92 VSRSATLVIAYLMKTLGLSLREAYEFVKSRR-PI--ISPNAGFMRQLKEYE 139 (139)
T ss_pred CchhHHHHHHHHHHHcCCCHHHHHHHHHHHC-Cc--cCCCHHHHHHHHHhC
Confidence 456663322 356999999999999864 32 213379999999997
No 54
>PRK13808 adenylate kinase; Provisional
Probab=21.32 E-value=3e+02 Score=28.19 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=49.1
Q ss_pred HhccCceEEEEeCHHHHHHHHHcCCCHHH-HHHHHHhcCCCCCCCCCChhHHHHHHHhHhhcCceeeecceeeccCCCH-
Q psy13810 259 MYRFPNLTVGVLTRDSVRAALRSGITAAQ-IIGFLRLHALPSVSCPLPPVVSDQIRLWEGERERLTTSEGVLYSQFVSQ- 336 (386)
Q Consensus 259 ~~rfPNlvvg~iTReSVr~Al~~GITA~Q-II~fL~~hAHp~~~~~lP~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s~- 336 (386)
.|.++.+.+|.|=|+-|. .|..... |-.++.... . +|+.++.+|-.++++... ...|++++.|+..
T Consensus 23 ~ygl~~is~gdlLR~~i~----~~s~~g~~~~~~~~~G~-----l-VPdeiv~~li~e~l~~~~--~~~G~ILDGFPRt~ 90 (333)
T PRK13808 23 QYGIVQLSTGDMLRAAVA----AGTPVGLKAKDIMASGG-----L-VPDEVVVGIISDRIEQPD--AANGFILDGFPRTV 90 (333)
T ss_pred HhCCceecccHHHHHHhh----cCChhhHHHHHHHHcCC-----C-CCHHHHHHHHHHHHhccc--ccCCEEEeCCCCCH
Confidence 466788888877565554 4443333 333444333 3 999999999888776543 4689999999854
Q ss_pred HHHHHHHHHHH
Q psy13810 337 ADFEKLRDYAQ 347 (386)
Q Consensus 337 ~~~~~v~~ya~ 347 (386)
++.+.+-....
T Consensus 91 ~QA~~L~~ll~ 101 (333)
T PRK13808 91 PQAEALDALLK 101 (333)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 55
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=20.97 E-value=1.1e+02 Score=29.90 Aligned_cols=74 Identities=12% Similarity=0.149 Sum_probs=54.6
Q ss_pred HHcCCCHHHHHHHHHhcCCCC---------CCCCCChhHHHHHHHhHhhcCceeeecceeeccCCCHHHHHHHHHHHHHc
Q psy13810 279 LRSGITAAQIIGFLRLHALPS---------VSCPLPPVVSDQIRLWEGERERLTTSEGVLYSQFVSQADFEKLRDYAQDL 349 (386)
Q Consensus 279 l~~GITA~QII~fL~~hAHp~---------~~~~lP~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s~~~~~~v~~ya~~~ 349 (386)
+++|.+....=++|+.-++.. ..+ .|+.++.+.-==..+.+=-.++.|.++.-+..+.-|+.-.++|+++
T Consensus 5 ~dkgl~~~~~~d~Le~~g~yID~lKfg~Gt~~l-~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~l 83 (237)
T TIGR03849 5 LDKGLPPKFVEDYLKVCGDYITFVKFGWGTSAL-IDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKGKFDEYLNECDEL 83 (237)
T ss_pred ecCCCCHHHHHHHHHHhhhheeeEEecCceEee-ccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhhhHHHHHHHHHHc
Confidence 467888888888998888766 234 7766655543223444555566678999999999999999999999
Q ss_pred CeEE
Q psy13810 350 GVLT 353 (386)
Q Consensus 350 g~ll 353 (386)
|.-.
T Consensus 84 Gf~~ 87 (237)
T TIGR03849 84 GFEA 87 (237)
T ss_pred CCCE
Confidence 9764
No 56
>PRK00279 adk adenylate kinase; Reviewed
Probab=20.54 E-value=6.7e+02 Score=23.00 Aligned_cols=104 Identities=13% Similarity=0.227 Sum_probs=58.5
Q ss_pred HhccCceEEEEeCHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCCChhHHHHHHHhHhhcCceeeecceeeccCCC-HH
Q psy13810 259 MYRFPNLTVGVLTRDSVRAALRSGITAAQIIGFLRLHALPSVSCPLPPVVSDQIRLWEGERERLTTSEGVLYSQFVS-QA 337 (386)
Q Consensus 259 ~~rfPNlvvg~iTReSVr~Al~~GITA~QII~fL~~hAHp~~~~~lP~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s-~~ 337 (386)
.+-++.+.+|-+-|+.+... .-.+.+|-.++.... . +|+.++..+-.-.... .....|++++.|+. .+
T Consensus 23 ~~~~~~is~~dl~r~~~~~~---~~~~~~~~~~~~~g~-----~-~p~~~~~~~i~~~l~~--~~~~~g~VlDGfPr~~~ 91 (215)
T PRK00279 23 KYGIPHISTGDMLRAAVKAG---TELGKEAKSYMDAGE-----L-VPDEIVIGLVKERLAQ--PDCKNGFLLDGFPRTIP 91 (215)
T ss_pred HhCCcEEECCccHHHHHhcc---chHHHHHHHHHHcCC-----c-CCHHHHHHHHHHHHhc--cCccCCEEEecCCCCHH
Confidence 35588888888877766542 223345556666433 2 8998886554443322 22345899999965 55
Q ss_pred HHHHHHHHHHHcCeEEEeeCCcceEEEeCCCchHHHHHHHh
Q psy13810 338 DFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKFWVN 378 (386)
Q Consensus 338 ~~~~v~~ya~~~g~llw~~~~kr~~~V~~~~h~~vr~f~k~ 378 (386)
+.+.+.++....|+ .-...+++......-+++..+|
T Consensus 92 qa~~l~~~l~~~~~-----~~~~vi~l~~~~~~~~~Rl~~R 127 (215)
T PRK00279 92 QAEALDEMLKELGI-----KLDAVIEIDVPDEELVERLSGR 127 (215)
T ss_pred HHHHHHHHHHHcCC-----CCCEEEEEECCHHHHHHHHhCC
Confidence 55666666565552 1233455554433334444433
No 57
>PF09170 STN1_2: CST, Suppressor of cdc thirteen homolog, complex subunit STN1; InterPro: IPR015253 STN1 is a component of the CST complex, a complex that binds to single-stranded DNA and is required to protect telomeres from DNA degradation. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. In addition to telomere protection, the CST complex has probably a more general role in DNA metabolism at non-telomeric sites [, ]. This entry represents a C-terminal uncharacterised domain ; PDB: 1WJ5_A.
Probab=20.36 E-value=81 Score=29.53 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=17.9
Q ss_pred HHHHHHhHcCceeeecC-CCcceeechh
Q psy13810 186 VFLQHLREFGLVYQRKR-KAGRFYPTKL 212 (386)
Q Consensus 186 ~~L~~L~~~GLvy~~~~-~~~~fypT~L 212 (386)
+.++-|.|-|+||++.. .+..||.|+=
T Consensus 109 eAiq~Lqe~G~Vfqk~~~~d~lY~VT~~ 136 (174)
T PF09170_consen 109 EAIQLLQEKGIVFQKDKSQDELYYVTDQ 136 (174)
T ss_dssp HHHHHHHHHTSEE-SS-SSS--BEE-SS
T ss_pred HHHHHHHHCCEEEeecCCCCceEEEecC
Confidence 67888999999999975 3468888854
No 58
>PLN02459 probable adenylate kinase
Probab=20.08 E-value=2.6e+02 Score=27.63 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=51.0
Q ss_pred HhccCceEEEEeCHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCCChhHHHHHHHhHhhcCceeeecceeeccCCC-HH
Q psy13810 259 MYRFPNLTVGVLTRDSVRAALRSGITAAQIIGFLRLHALPSVSCPLPPVVSDQIRLWEGERERLTTSEGVLYSQFVS-QA 337 (386)
Q Consensus 259 ~~rfPNlvvg~iTReSVr~Al~~GITA~QII~fL~~hAHp~~~~~lP~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s-~~ 337 (386)
.+.++.+.+|.|=|+.|..--.. +.+|-+|+.+-. . ||+.++-++-..++....-.-..|++++.|+- .+
T Consensus 52 ~~~~~~is~gdllR~ei~~~t~l---g~~i~~~~~~G~-----l-VPdeiv~~ll~~~l~~~~~~~~~g~iLDGFPRt~~ 122 (261)
T PLN02459 52 LLGVPHIATGDLVREEIKSSGPL---GAQLKEIVNQGK-----L-VPDEIIFSLLSKRLEAGEEEGESGFILDGFPRTVR 122 (261)
T ss_pred HhCCcEEeCcHHHHHHHhccchh---HHHHHHHHHcCC-----c-cCHHHHHHHHHHHHhcccccCCceEEEeCCCCCHH
Confidence 56799999999988887643333 356667766544 3 89999988877666543223468999999975 44
Q ss_pred HHHHH
Q psy13810 338 DFEKL 342 (386)
Q Consensus 338 ~~~~v 342 (386)
..+.+
T Consensus 123 Qa~~L 127 (261)
T PLN02459 123 QAEIL 127 (261)
T ss_pred HHHHH
Confidence 44444
Done!