Query psy13810
Match_columns 386
No_of_seqs 133 out of 210
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 21:05:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dom_A RNA polymerase II trans 100.0 2.9E-33 9.8E-38 235.0 6.3 83 300-383 25-107 (108)
2 3dgp_A RNA polymerase II trans 100.0 2E-32 6.9E-37 219.3 6.6 78 306-383 2-79 (80)
3 1b0n_B Protein (SINI protein); 68.8 3.8 0.00013 30.4 3.2 25 275-299 19-43 (57)
4 2v79_A DNA replication protein 38.7 8.3 0.00028 32.7 0.7 84 131-217 10-107 (135)
5 2hl7_A Cytochrome C-type bioge 29.6 39 0.0013 26.7 3.2 24 272-295 49-72 (84)
6 3s4e_A Dual specificity protei 28.3 44 0.0015 27.3 3.5 49 270-321 92-144 (144)
7 2kw0_A CCMH protein; oxidoredu 28.2 42 0.0014 26.9 3.2 25 272-296 46-70 (90)
8 1rq8_A Conserved hypothetical 27.3 2.5E+02 0.0086 22.8 8.3 75 283-366 2-86 (104)
9 1p6r_A Penicillinase repressor 25.1 86 0.003 23.0 4.4 41 6-46 10-53 (82)
10 2gjf_A Designed protein; proca 24.9 1.1E+02 0.0038 22.6 4.9 53 328-380 10-69 (78)
11 3lab_A Putative KDPG (2-keto-3 24.8 52 0.0018 30.3 3.5 128 228-378 37-179 (217)
12 1wj5_A Hypothetical protein (r 24.7 47 0.0016 28.0 2.9 28 185-212 81-109 (120)
13 3sr0_A Adenylate kinase; phosp 22.8 37 0.0013 30.2 2.2 78 259-351 23-102 (206)
14 2e0t_A Dual specificity phosph 22.0 1.5E+02 0.005 24.1 5.6 54 262-319 86-145 (151)
15 3mhs_B Protein SUS1; multi-pro 21.7 44 0.0015 26.9 2.2 37 271-313 46-82 (96)
16 1zzw_A Dual specificity protei 20.1 2E+02 0.007 23.2 6.1 47 270-319 94-144 (149)
No 1
>3dom_A RNA polymerase II transcription factor B subunit; protein-protein complex, heterodimer, beta-alpha-beta split, strand addition; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.9e-33 Score=234.96 Aligned_cols=83 Identities=42% Similarity=0.785 Sum_probs=72.7
Q ss_pred CCCCCChhHHHHHHHhHhhcCceeeecceeeccCCCHHHHHHHHHHHHHcCeEEEeeCCcceEEEeCCCchHHHHHHHhh
Q psy13810 300 VSCPLPPVVSDQIRLWEGERERLTTSEGVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKFWVNH 379 (386)
Q Consensus 300 ~~~~lP~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s~~~~~~v~~ya~~~g~llw~~~~kr~~~V~~~~h~~vr~f~k~~ 379 (386)
.|+ |||||+|||||||.|||||++++||||++|.|+++|+.+++||+++|||||+|+.+|+|||+.+||++||+|||++
T Consensus 25 ~p~-lPpTVvDQIrLWE~ErnRl~~~~G~LY~dF~s~~efe~v~~yA~e~gvLlW~d~~kr~~~Vs~egh~~vk~f~Kr~ 103 (108)
T 3dom_A 25 LQV-LPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAKRK 103 (108)
T ss_dssp --------CCCHHHHHHHHHTTCEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEGGGTEEEEEGGGHHHHHHHHHHH
T ss_pred CCC-CCCcHHHHHHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEEEecCCccEEEEeccchHHHHHHHHHH
Confidence 478 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q psy13810 380 QKGS 383 (386)
Q Consensus 380 ~~~~ 383 (386)
+++.
T Consensus 104 ~~~~ 107 (108)
T 3dom_A 104 LKKK 107 (108)
T ss_dssp C---
T ss_pred Hhcc
Confidence 8764
No 2
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-32 Score=219.27 Aligned_cols=78 Identities=42% Similarity=0.778 Sum_probs=61.8
Q ss_pred hhHHHHHHHhHhhcCceeeecceeeccCCCHHHHHHHHHHHHHcCeEEEeeCCcceEEEeCCCchHHHHHHHhhhcCC
Q psy13810 306 PVVSDQIRLWEGERERLTTSEGVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKFWVNHQKGS 383 (386)
Q Consensus 306 ~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s~~~~~~v~~ya~~~g~llw~~~~kr~~~V~~~~h~~vr~f~k~~~~~~ 383 (386)
|||+|||||||+|||||++++||||++|+|+++|+.+++||+++|||||+|+.+|+|||+++||++||+|||+++++.
T Consensus 2 pTV~DQIrLWe~ErnRl~~~~g~Ly~~F~s~~efe~~~~yA~e~gvLlW~~~~kr~~~V~~~gh~~vk~f~k~~~~~~ 79 (80)
T 3dgp_A 2 PTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAKRKLKKK 79 (80)
T ss_dssp ------------CGGGCEEEEEEEEECCSCHHHHHHHHHHHHHTTCEEEEETTTTEEEEEGGGHHHHHHHHTTC----
T ss_pred CchHHHHHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEEEecCCccEEEEeccchHHHHHHHHHHHhcc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998764
No 3
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=68.80 E-value=3.8 Score=30.35 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=19.8
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCCC
Q psy13810 275 VRAALRSGITAAQIIGFLRLHALPS 299 (386)
Q Consensus 275 Vr~Al~~GITA~QII~fL~~hAHp~ 299 (386)
|++|-+.|+|.++|..||..+-.+.
T Consensus 19 I~~Ak~lGlsleEIrefL~l~~~~~ 43 (57)
T 1b0n_B 19 MVEAKEANISPEEIRKYLLLNKKSA 43 (57)
T ss_dssp HHHHHHTTCCHHHHHHHHHHC----
T ss_pred HHHHHHcCCCHHHHHHHHHHhccCC
Confidence 6899999999999999999886543
No 4
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=38.69 E-value=8.3 Score=32.74 Aligned_cols=84 Identities=13% Similarity=0.134 Sum_probs=53.5
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCChhhHHHHHHhhccCCCCccccCC-------CCC-HHHHHHHHHHhHcCceeeecC
Q psy13810 131 LLETPAQVWYFILKYLETVESKGLDLVECLTFLFQLKFSTFGTDYSTE-------GMS-DKLQVFLQHLREFGLVYQRKR 202 (386)
Q Consensus 131 L~d~~~QvW~lll~yl~~~e~~g~~~~~~L~flf~L~~~~~G~~Y~~~-------~ls-~~q~~~L~~L~~~GLvy~~~~ 202 (386)
+.....-+-.+|+.+. .+.|++..|++=.++-..+.+-|..+++- +++ .+...+|+.|.+-|+|....+
T Consensus 10 ~~~G~~~ip~~LL~~y---~~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~ 86 (135)
T 2v79_A 10 QEQGTSTIPNLLLTHY---KQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEEC 86 (135)
T ss_dssp HHHCEEEEEHHHHHHH---HHHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEE
T ss_pred HHcCCccchHHHHHHH---HHhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 3334444455666666 56688888876666555566666555431 233 466789999999999987432
Q ss_pred -C-----Ccceeechhhhhhc
Q psy13810 203 -K-----AGRFYPTKLALNMA 217 (386)
Q Consensus 203 -~-----~~~fypT~La~~l~ 217 (386)
+ ...|..|||.--|.
T Consensus 87 ~d~~g~~~~~ydL~pL~ekL~ 107 (135)
T 2v79_A 87 EDQNGIKFEKYSLQPLWGKLY 107 (135)
T ss_dssp ECTTCCEEEEEECHHHHHHHH
T ss_pred ecCCCceEEEeeHHHHHHHHH
Confidence 1 14788998887553
No 5
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=29.62 E-value=39 Score=26.72 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhc
Q psy13810 272 RDSVRAALRSGITAAQIIGFLRLH 295 (386)
Q Consensus 272 ReSVr~Al~~GITA~QII~fL~~h 295 (386)
|.-|++-+..|=|-+||++||...
T Consensus 49 R~~V~~~l~~G~sd~eI~~~~v~R 72 (84)
T 2hl7_A 49 RKQIYGQLQQGKSDGEIVDYMVAR 72 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 778999999999999999999865
No 6
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=28.29 E-value=44 Score=27.32 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=35.5
Q ss_pred eCHHHHHH-H---HHcCCCHHHHHHHHHhcCCCCCCCCCChhHHHHHHHhHhhcCc
Q psy13810 270 LTRDSVRA-A---LRSGITAAQIIGFLRLHALPSVSCPLPPVVSDQIRLWEGERER 321 (386)
Q Consensus 270 iTReSVr~-A---l~~GITA~QII~fL~~hAHp~~~~~lP~tV~dQIrLWe~Er~R 321 (386)
++|...-- | ...|.+.++.+.++++.- |. +...+....|++.||.+++|
T Consensus 92 ~sRS~~~v~ayLm~~~~~~~~~A~~~v~~~R-p~--~~pn~~f~~qL~~~e~~~~~ 144 (144)
T 3s4e_A 92 VSRAAAIVIGFLMNSEQTSFTSAFSLVKNAR-PS--ICPNSGFMEQLRTYQEGKES 144 (144)
T ss_dssp SSHHHHHHHHHHHHHHCCCHHHHHHHHHHHS-TT--CCCCHHHHHHHHHTTHHHHC
T ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHHHC-CC--cCCCHHHHHHHHHHHHhccC
Confidence 67864432 2 258999999999999854 32 21447899999999987653
No 7
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=28.17 E-value=42 Score=26.93 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcC
Q psy13810 272 RDSVRAALRSGITAAQIIGFLRLHA 296 (386)
Q Consensus 272 ReSVr~Al~~GITA~QII~fL~~hA 296 (386)
|.-|++-+..|=|-+||++||...-
T Consensus 46 R~~Vre~l~~G~Sd~eI~~~mv~RY 70 (90)
T 2kw0_A 46 RQKVYELMQEGKSKKEIVDYMVARY 70 (90)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 7789999999999999999998653
No 8
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=27.30 E-value=2.5e+02 Score=22.79 Aligned_cols=75 Identities=17% Similarity=0.039 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHhcCCCC-------CCCCCChhHHHHHH--HhHhhcCceeeecceeeccCCCHHHH-HHHHHHHHHcCeE
Q psy13810 283 ITAAQIIGFLRLHALPS-------VSCPLPPVVSDQIR--LWEGERERLTTSEGVLYSQFVSQADF-EKLRDYAQDLGVL 352 (386)
Q Consensus 283 ITA~QII~fL~~hAHp~-------~~~~lP~tV~dQIr--LWe~Er~R~~~~~g~Ly~~f~s~~~~-~~v~~ya~~~g~l 352 (386)
+|..|. .||++-||.- +.+ |-++|++||. |...|-=++++.... ..+- +.....|+..|+.
T Consensus 2 Lt~kqr-~~LR~~ah~Lkpvv~IGK~G-lTe~vi~ei~~aL~~hELIKVkvl~~~-------~~d~~e~a~~la~~t~a~ 72 (104)
T 1rq8_A 2 LTGKQK-RYLRSLAHNIDPIFQIGKGG-INENMIKQIDDTLENRELIKVHVLQNN-------FDDKKELAETLSEATRSE 72 (104)
T ss_dssp CCHHHH-HHHHHHTTSSCCSCEECSSS-CCHHHHHHHHHHHHHSSEEEEEECCCC-------HHHHHHHHHHHHHHHTEE
T ss_pred CCHHHH-HHHHHHhcCCCCeEEECCCC-CCHHHHHHHHHHHHHCCcEEEEEeCCC-------HHHHHHHHHHHHHHhCCE
Confidence 355664 8999999976 446 8899999998 555555566654422 2333 3445566667766
Q ss_pred EEeeCCcceEEEeC
Q psy13810 353 TWQNEKKRTVVVTK 366 (386)
Q Consensus 353 lw~~~~kr~~~V~~ 366 (386)
+=.-.++..++-.+
T Consensus 73 vVq~IG~~~VLYR~ 86 (104)
T 1rq8_A 73 LVQVIGSMIVIYRE 86 (104)
T ss_dssp EEEEETTEEEEEEC
T ss_pred EEEEECCEEEEEeC
Confidence 54556665555443
No 9
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=25.10 E-value=86 Score=23.04 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=29.6
Q ss_pred HHHHHHHHhccCCCccHHHHHhhhccc---hhHHHHHHHHHHHH
Q psy13810 6 AKHYVIRLLFVEQPVPQAVIASWLSKT---HAKEHKEATDTLTE 46 (386)
Q Consensus 6 ak~~vmrlL~~~~~v~~~~~~~Wv~~~---~~~~~~~a~~~L~~ 46 (386)
++..||..||..+|++..+|..-+..+ +.......+++|.+
T Consensus 10 ~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~ 53 (82)
T 1p6r_A 10 AELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIK 53 (82)
T ss_dssp HHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 567799999998999999998877643 34455555555554
No 10
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=24.86 E-value=1.1e+02 Score=22.63 Aligned_cols=53 Identities=6% Similarity=0.030 Sum_probs=39.2
Q ss_pred eeeccC-CCHHHHHHHHHHHH--HcCeEEEeeCC----cceEEEeCCCchHHHHHHHhhh
Q psy13810 328 VLYSQF-VSQADFEKLRDYAQ--DLGVLTWQNEK----KRTVVVTKQGHSDIKKFWVNHQ 380 (386)
Q Consensus 328 ~Ly~~f-~s~~~~~~v~~ya~--~~g~llw~~~~----kr~~~V~~~~h~~vr~f~k~~~ 380 (386)
.+|+=. .+.+..+.+.+..+ ..++-.|..+. .-.+.|+++..+.+++|+++..
T Consensus 10 ~~~rV~~~~~~q~~~L~~L~~~~~~~ldfW~~~~~~~~~vdI~V~p~~~~~f~~~L~~~~ 69 (78)
T 2gjf_A 10 TIFVIVPTNEEQVAFLEALAKQDELNFDWQNPPTEPGQPVVILIPSDMVEWFLEMLKAKG 69 (78)
T ss_dssp EEEEECCCSHHHHHHHHHHHTCTTTCCEESSCTTSTTCCEEEEECTTSHHHHHHHHHHHT
T ss_pred eEEEEEcCCHHHHHHHHHHHhcCCCCEEeeCCCCCCCCeEEEEECHHHHHHHHHHHHHCC
Confidence 345533 46677777777777 67888998663 3578999999999999998754
No 11
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=24.80 E-value=52 Score=30.29 Aligned_cols=128 Identities=15% Similarity=0.128 Sum_probs=81.2
Q ss_pred CceEEEeeceeEEEecCChHHHHHHHHHHHHHhccCceEEE---EeCHHHHHHHHHcC-------CCHHHHHHHHHhcCC
Q psy13810 228 PGFLIVETNFRVYAYTDSNLKVALIGLFCELMYRFPNLTVG---VLTRDSVRAALRSG-------ITAAQIIGFLRLHAL 297 (386)
Q Consensus 228 ~g~iIvETNfrvYAYT~S~LqiaiL~lF~~l~~rfPNlvvg---~iTReSVr~Al~~G-------ITA~QII~fL~~hAH 297 (386)
.|.=++|..|| +|-.... ...+..++|+++|| ++|.+.+++|.+.| -+-..+|.+-+.+--
T Consensus 37 gGi~~iEvt~~------t~~a~~~---I~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fivsP~~~~evi~~~~~~~v 107 (217)
T 3lab_A 37 GGVHLLEVTLR------TEAGLAA---ISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPELIEKAKQVKL 107 (217)
T ss_dssp TTCCEEEEETT------STTHHHH---HHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCC------CccHHHH---HHHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEEEeCCCcHHHHHHHHHcCC
Confidence 36668888776 4544443 44566788999999 89999999999998 344678888777643
Q ss_pred ---CCCCCCCCh--hHHHHHHHhHhhcCceeeecceeeccCCCHHHHHHHHHHHHHcCeEEEeeCCcceEEEeCCCchHH
Q psy13810 298 ---PSVSCPLPP--VVSDQIRLWEGERERLTTSEGVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDI 372 (386)
Q Consensus 298 ---p~~~~~lP~--tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s~~~~~~v~~ya~~~g~llw~~~~kr~~~V~~~~h~~v 372 (386)
-|.|+ +|- |..+=.+-|+.--+-+++.++-.+- - .+|.+++...+ +.-+.+.+.-=.-+++
T Consensus 108 ~~~~~~~~-~PG~~TptE~~~A~~~Gad~vK~FPa~~~g------G----~~~lkal~~p~---p~i~~~ptGGI~~~N~ 173 (217)
T 3lab_A 108 DGQWQGVF-LPGVATASEVMIAAQAGITQLKCFPASAIG------G----AKLLKAWSGPF---PDIQFCPTGGISKDNY 173 (217)
T ss_dssp HCSCCCEE-EEEECSHHHHHHHHHTTCCEEEETTTTTTT------H----HHHHHHHHTTC---TTCEEEEBSSCCTTTH
T ss_pred CccCCCeE-eCCCCCHHHHHHHHHcCCCEEEECcccccc------C----HHHHHHHHhhh---cCceEEEeCCCCHHHH
Confidence 11244 564 7778788899888888887652110 1 24555543222 2223333222234668
Q ss_pred HHHHHh
Q psy13810 373 KKFWVN 378 (386)
Q Consensus 373 r~f~k~ 378 (386)
.+|++.
T Consensus 174 ~~~l~a 179 (217)
T 3lab_A 174 KEYLGL 179 (217)
T ss_dssp HHHHHS
T ss_pred HHHHHC
Confidence 998864
No 12
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=24.70 E-value=47 Score=27.95 Aligned_cols=28 Identities=39% Similarity=0.509 Sum_probs=21.2
Q ss_pred HHHHHHHhHcCceeeecCCC-cceeechh
Q psy13810 185 QVFLQHLREFGLVYQRKRKA-GRFYPTKL 212 (386)
Q Consensus 185 ~~~L~~L~~~GLvy~~~~~~-~~fypT~L 212 (386)
++-+.-|.+-|+||++..+. ..||.|.=
T Consensus 81 KeAi~~Lqe~G~VfqK~~~~d~lYyVT~q 109 (120)
T 1wj5_A 81 KNALQLLQEKGLVFQRDSGSDKLYYVTTK 109 (120)
T ss_dssp HHHHHHHHHHTSEECSSCSSSCCBEECSS
T ss_pred HHHHHHHHHCCEEEeccCCccceEEeecc
Confidence 45677899999999987544 47888853
No 13
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=22.82 E-value=37 Score=30.22 Aligned_cols=78 Identities=15% Similarity=0.272 Sum_probs=50.6
Q ss_pred HhccCceEEEEeCHHHHHHHHHcCCC-HHHHHHHHHhcCCCCCCCCCChhHHHHHHHhHhhcCceeeecceeeccCCC-H
Q psy13810 259 MYRFPNLTVGVLTRDSVRAALRSGIT-AAQIIGFLRLHALPSVSCPLPPVVSDQIRLWEGERERLTTSEGVLYSQFVS-Q 336 (386)
Q Consensus 259 ~~rfPNlvvg~iTReSVr~Al~~GIT-A~QII~fL~~hAHp~~~~~lP~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s-~ 336 (386)
.|.+|++.+|-|=|+.++ .|-. ..++-.|+.+.. . +|+.++-++-. +|+.-.+|++++.|+- .
T Consensus 23 ~~g~~~istGdllR~~i~----~~t~lg~~~~~~~~~G~-----l-vpd~iv~~lv~-----~~l~~~~~~ilDGfPRt~ 87 (206)
T 3sr0_A 23 EKGFVHISTGDILREAVQ----KGTPLGKKAKEYMERGE-----L-VPDDLIIALIE-----EVFPKHGNVIFDGFPRTV 87 (206)
T ss_dssp HHCCEEEEHHHHHHHHHH----HTCHHHHHHHHHHHHTC-----C-CCHHHHHHHHH-----HHCCSSSCEEEESCCCSH
T ss_pred HHCCeEEcHHHHHHHHHH----hcChhhhhHHHHHhcCC-----c-CCHHHHHHHHH-----HhhccCCceEecCCchhH
Confidence 567888888877665554 3432 234445555443 3 99999866642 4455678999999974 5
Q ss_pred HHHHHHHHHHHHcCe
Q psy13810 337 ADFEKLRDYAQDLGV 351 (386)
Q Consensus 337 ~~~~~v~~ya~~~g~ 351 (386)
+..+.+-+...+.|.
T Consensus 88 ~Qa~~l~~~l~~~~~ 102 (206)
T 3sr0_A 88 KQAEALDEMLEKKGL 102 (206)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhHHHhcc
Confidence 556666666666663
No 14
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}
Probab=21.97 E-value=1.5e+02 Score=24.07 Aligned_cols=54 Identities=15% Similarity=0.000 Sum_probs=37.9
Q ss_pred cCceEEEE--eCHHH-HHHH---HHcCCCHHHHHHHHHhcCCCCCCCCCChhHHHHHHHhHhhc
Q psy13810 262 FPNLTVGV--LTRDS-VRAA---LRSGITAAQIIGFLRLHALPSVSCPLPPVVSDQIRLWEGER 319 (386)
Q Consensus 262 fPNlvvg~--iTReS-Vr~A---l~~GITA~QII~fL~~hAHp~~~~~lP~tV~dQIrLWe~Er 319 (386)
-|-+|=+. ++|.. +--| ...|.+.++++.++++.- | +..-+....|+..||.+.
T Consensus 86 ~~vlVHC~aG~~RSg~~~~ayl~~~~~~~~~~a~~~v~~~R-~---i~pn~~f~~qL~~~e~~l 145 (151)
T 2e0t_A 86 GKILVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHR-G---IIPNRGFLRQLLALDRRL 145 (151)
T ss_dssp CCEEEECSSSSHHHHHHHHHHHHHHSCCCHHHHHHHHHHTS-C---SCCCHHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHcC-C---CCCCHHHHHHHHHHHHHH
Confidence 34444432 57887 5445 357999999999999854 3 412367999999999763
No 15
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=21.72 E-value=44 Score=26.92 Aligned_cols=37 Identities=14% Similarity=0.212 Sum_probs=28.8
Q ss_pred CHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCCChhHHHHHH
Q psy13810 271 TRDSVRAALRSGITAAQIIGFLRLHALPSVSCPLPPVVSDQIR 313 (386)
Q Consensus 271 TReSVr~Al~~GITA~QII~fL~~hAHp~~~~~lP~tV~dQIr 313 (386)
.|+-+++. ..+|-+++++.+.-+|+ .. ||+.|...+.
T Consensus 46 ~r~~i~~~--~~vt~~~L~~~I~P~Ar---~~-VP~~VK~Ell 82 (96)
T 3mhs_B 46 TKSEMNIN--ESTNFTQILSTVEPKAL---EM-VSDSTRETVL 82 (96)
T ss_dssp HHHHHHHH--TCCCHHHHHHHHHHHHH---HT-SCHHHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHHHHhHHHH---HH-CCHHHHHHHH
Confidence 34445444 79999999999999997 55 9999976653
No 16
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}
Probab=20.13 E-value=2e+02 Score=23.17 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=34.3
Q ss_pred eCHHHHHHH----HHcCCCHHHHHHHHHhcCCCCCCCCCChhHHHHHHHhHhhc
Q psy13810 270 LTRDSVRAA----LRSGITAAQIIGFLRLHALPSVSCPLPPVVSDQIRLWEGER 319 (386)
Q Consensus 270 iTReSVr~A----l~~GITA~QII~fL~~hAHp~~~~~lP~tV~dQIrLWe~Er 319 (386)
++|...--| ...|.+.++++.++++.- |. +..-+....|++.||.+.
T Consensus 94 ~~RSg~~~~ayl~~~~~~~~~~a~~~v~~~R-~~--~~pn~~f~~qL~~~e~~l 144 (149)
T 1zzw_A 94 VSRSATIVIAYLMKHTRMTMTDAYKFVKGKR-PI--ISPNLNFMGQLLEFEEDL 144 (149)
T ss_dssp SSHHHHHHHHHHHHHSCCCHHHHHHHHHHHC-TT--CCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHC-Cc--cCCCHHHHHHHHHHHHHH
Confidence 588876433 247999999999999863 32 212357899999999874
Done!