Query psy13810
Match_columns 386
No_of_seqs 133 out of 210
Neff 5.3
Searched_HMMs 13730
Date Fri Aug 16 21:05:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13810.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13810hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b0na1 a.34.1.1 (A:74-108) Si 77.5 0.94 6.8E-05 28.5 3.0 21 274-294 8-28 (35)
2 d1wbha1 c.1.10.1 (A:1-213) KDP 74.6 3 0.00022 36.3 6.8 125 229-379 40-176 (213)
3 d1vhca_ c.1.10.1 (A:) Hypothet 62.0 8.2 0.00059 33.3 6.9 157 185-378 5-174 (212)
4 d1wa3a1 c.1.10.1 (A:2-203) KDP 61.9 6.9 0.00051 33.4 6.4 125 228-378 33-169 (202)
5 d1mxsa_ c.1.10.1 (A:) KDPG ald 61.6 7.2 0.00053 33.8 6.5 123 229-378 42-177 (216)
6 d1stza1 a.4.5.51 (A:14-100) He 53.8 5.2 0.00038 29.9 3.6 43 173-216 31-73 (87)
7 d1kwma2 d.58.3.1 (A:1A-95A) Pr 46.5 20 0.0015 26.3 6.1 55 326-380 9-72 (95)
8 d1wj5a_ a.4.5.59 (A:) OB fold- 40.9 8.2 0.00059 30.6 2.9 37 183-219 79-116 (120)
9 d2boaa2 d.58.3.1 (A:4-99) Proc 31.0 37 0.0027 24.6 5.2 59 322-380 2-67 (94)
10 d1jqga2 d.58.3.1 (A:4P-100P) P 29.9 48 0.0035 23.8 5.7 47 334-380 15-64 (92)
11 d1puee_ a.4.5.21 (E:) Transcri 28.7 21 0.0015 26.7 3.3 34 349-382 18-51 (88)
12 d2v9va2 a.4.5.35 (A:438-510) C 27.0 58 0.0042 22.4 5.5 62 247-331 6-67 (73)
13 d1eg3a2 a.39.1.7 (A:210-306) D 25.7 58 0.0042 24.5 5.6 46 104-150 50-96 (97)
14 d1jhfa1 a.4.5.2 (A:2-72) LexA 23.8 30 0.0022 24.2 3.3 55 131-201 3-59 (71)
15 d2p5ka1 a.4.5.3 (A:2-64) Argin 23.0 20 0.0014 25.1 2.1 29 180-208 33-61 (63)
16 d1sd4a_ a.4.5.39 (A:) Penicill 21.1 40 0.0029 25.7 3.9 99 7-110 8-110 (122)
17 d1b4aa1 a.4.5.3 (A:4-78) Argin 21.0 30 0.0022 24.9 2.9 30 180-209 31-60 (75)
No 1
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=77.52 E-value=0.94 Score=28.55 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=18.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHh
Q psy13810 274 SVRAALRSGITAAQIIGFLRL 294 (386)
Q Consensus 274 SVr~Al~~GITA~QII~fL~~ 294 (386)
=|+.|+..||+-+|.-.||+-
T Consensus 8 lVkeAM~SGvSK~QFrEflef 28 (35)
T d1b0na1 8 LVRDAMTSGVSKKQFREFLDY 28 (35)
T ss_dssp HHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHH
Confidence 489999999999999999973
No 2
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}
Probab=74.55 E-value=3 Score=36.29 Aligned_cols=125 Identities=10% Similarity=0.115 Sum_probs=85.7
Q ss_pred ceEEEeeceeEEEecCChHHHHHHHHHHHHHhccCceEEE---EeCHHHHHHHHHcCC-------CHHHHHHHHHhcCCC
Q psy13810 229 GFLIVETNFRVYAYTDSNLKVALIGLFCELMYRFPNLTVG---VLTRDSVRAALRSGI-------TAAQIIGFLRLHALP 298 (386)
Q Consensus 229 g~iIvETNfrvYAYT~S~LqiaiL~lF~~l~~rfPNlvvg---~iTReSVr~Al~~GI-------TA~QII~fL~~hAHp 298 (386)
|.=++|-=+| +|-- +..+.++..+||++.+| ++|.|.+++|.+.|. +-..++.+...+-.
T Consensus 40 Gi~~iEitl~------tp~a---~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~~~~~v~~~a~~~~i- 109 (213)
T d1wbha1 40 GVRVLNVTLR------TECA---VDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLKAATEGTI- 109 (213)
T ss_dssp TCCEEEEESC------STTH---HHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESSCCHHHHHHHHHSSS-
T ss_pred CCCEEEEeCC------ChhH---HHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECCCCCHHHHHHHHhcCC-
Confidence 5556665555 3433 44555667789999999 799999999999995 46789999999886
Q ss_pred CCCCCCCh--hHHHHHHHhHhhcCceeeecceeeccCCCHHHHHHHHHHHHHcCeEEEeeCCcceEEEeCCCchHHHHHH
Q psy13810 299 SVSCPLPP--VVSDQIRLWEGERERLTTSEGVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKFW 376 (386)
Q Consensus 299 ~~~~~lP~--tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s~~~~~~v~~ya~~~g~llw~~~~kr~~~V~~~~h~~vr~f~ 376 (386)
|. +|= |..+=...|+.=-+-+|+.++-.+- -.+|.+.+...+ +.-+.+-..-=.-+++++|+
T Consensus 110 --~~-iPGv~TpsEi~~A~~~G~~~vKlFPA~~~G----------g~~~lkal~~p~---p~~~~~ptGGV~~~n~~~yl 173 (213)
T d1wbha1 110 --PL-IPGISTVSELMLGMDYGLKEFKFFPAEANG----------GVKALQAIAGPF---SQVRFCPTGGISPANYRDYL 173 (213)
T ss_dssp --CE-EEEESSHHHHHHHHHTTCCEEEETTTTTTT----------HHHHHHHHHTTC---TTCEEEEBSSCCTTTHHHHH
T ss_pred --Cc-cCCcCCHHHHHHHHHCCCCEEEeccchhcC----------hHHHHHHhcCcc---cCCceeeeCCCCHHHHHHHH
Confidence 44 553 7788888999999999998875432 145556644333 33333332233346699998
Q ss_pred Hhh
Q psy13810 377 VNH 379 (386)
Q Consensus 377 k~~ 379 (386)
+.-
T Consensus 174 ~~g 176 (213)
T d1wbha1 174 ALK 176 (213)
T ss_dssp TST
T ss_pred hCC
Confidence 753
No 3
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}
Probab=61.96 E-value=8.2 Score=33.27 Aligned_cols=157 Identities=18% Similarity=0.120 Sum_probs=99.3
Q ss_pred HHHHHHHhHcCceeeec-CCCcceeechhhhhhccCCcccccCCCceEEEeeceeEEEecCChHHHHHHHHHHHHHhccC
Q psy13810 185 QVFLQHLREFGLVYQRK-RKAGRFYPTKLALNMATRGTLKQIREPGFLIVETNFRVYAYTDSNLKVALIGLFCELMYRFP 263 (386)
Q Consensus 185 ~~~L~~L~~~GLvy~~~-~~~~~fypT~La~~l~s~~~~~~~~~~g~iIvETNfrvYAYT~S~LqiaiL~lF~~l~~rfP 263 (386)
+++++.|.+.++|-.-. .+... .-+++-.| .+.|.=++|-=+| +|-- +....++..++|
T Consensus 5 ~~~~~~l~~~~iipvlr~~~~~~--~~~~~~al---------~~~Gi~~iEitl~------~~~a---~~~I~~l~~~~p 64 (212)
T d1vhca_ 5 QQIIEKLRELKIVPVIALDNADD--ILPLADTL---------AKNGLSVAEITFR------SEAA---ADAIRLLRANRP 64 (212)
T ss_dssp HHHHHHHHHHCEEEEECCSSGGG--HHHHHHHH---------HHTTCCEEEEETT------STTH---HHHHHHHHHHCT
T ss_pred HHHHHHHHHCCEEEEEeCCCHHH--HHHHHHHH---------HHCCCCEEEEeCC------ChhH---HHHHHHHHhcCC
Confidence 56788888999884432 11111 11222212 1235556665555 3333 334456677899
Q ss_pred ceEEE---EeCHHHHHHHHHcCC-------CHHHHHHHHHhcCCCCCCCCCCh--hHHHHHHHhHhhcCceeeecceeec
Q psy13810 264 NLTVG---VLTRDSVRAALRSGI-------TAAQIIGFLRLHALPSVSCPLPP--VVSDQIRLWEGERERLTTSEGVLYS 331 (386)
Q Consensus 264 Nlvvg---~iTReSVr~Al~~GI-------TA~QII~fL~~hAHp~~~~~lP~--tV~dQIrLWe~Er~R~~~~~g~Ly~ 331 (386)
++.|| ++|.|.+++|.+.|- .-++++.+-..+-. |+ +|= |..+=...|+.--+-+|+.++-.+-
T Consensus 65 ~~~vGaGTV~~~~~~~~a~~aGa~FivSP~~~~~v~~~a~~~~i---~~-iPGv~TpsEi~~A~~~G~~~vK~FPA~~~g 140 (212)
T d1vhca_ 65 DFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNF---PI-TPGVNNPMAIEIALEMGISAVKFFPAEASG 140 (212)
T ss_dssp TCEEEEESCCSHHHHHHHHHHTCSEEECSSCCHHHHHHHHHTTC---CE-ECEECSHHHHHHHHHTTCCEEEETTTTTTT
T ss_pred CceEeeeecccHHHHHHHHhhCCcEEECCCCCHHHHHHHHhcCC---Cc-cCCcCCHHHHHHHHHCCCCEEEEccccccc
Confidence 99999 899999999999995 45799999999886 44 663 8888888999999999998874321
Q ss_pred cCCCHHHHHHHHHHHHHcCeEEEeeCCcceEEEeCCCchHHHHHHHh
Q psy13810 332 QFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKFWVN 378 (386)
Q Consensus 332 ~f~s~~~~~~v~~ya~~~g~llw~~~~kr~~~V~~~~h~~vr~f~k~ 378 (386)
=.+|.+.+...+ +.-++|-+.-=.-+++++|++.
T Consensus 141 ----------G~~~lkal~~p~---p~~~~~ptGGV~~~N~~~yl~~ 174 (212)
T d1vhca_ 141 ----------GVKMIKALLGPY---AQLQIMPTGGIGLHNIRDYLAI 174 (212)
T ss_dssp ----------HHHHHHHHHTTT---TTCEEEEBSSCCTTTHHHHHTS
T ss_pred ----------hHHHHHHHhccc---cCCeEEecCCCCHHHHHHHHhC
Confidence 145555533222 2333333223334669999864
No 4
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}
Probab=61.89 E-value=6.9 Score=33.41 Aligned_cols=125 Identities=12% Similarity=0.157 Sum_probs=81.9
Q ss_pred CceEEEeeceeEEEecCChHHHHHHHHHHHHHhccCceEEEE---eCHHHHHHHHHcCC-------CHHHHHHHHHhcCC
Q psy13810 228 PGFLIVETNFRVYAYTDSNLKVALIGLFCELMYRFPNLTVGV---LTRDSVRAALRSGI-------TAAQIIGFLRLHAL 297 (386)
Q Consensus 228 ~g~iIvETNfrvYAYT~S~LqiaiL~lF~~l~~rfPNlvvg~---iTReSVr~Al~~GI-------TA~QII~fL~~hAH 297 (386)
.|.=++|-.+| +|--...++-..+ ...|++.||. +|++.+++|.+.|- +-.+++.+...+-+
T Consensus 33 ~Gi~~iEitlr------~p~a~~~i~~l~~--~~~~~~~vGaGTV~~~~~~~~a~~aGa~fivsP~~~~~v~~~~~~~~i 104 (202)
T d1wa3a1 33 GGVHLIEITFT------VPDADTVIKELSF--LKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGV 104 (202)
T ss_dssp TTCCEEEEETT------STTHHHHHHHTHH--HHHTTCEEEEESCCSHHHHHHHHHHTCSEEECSSCCHHHHHHHHHHTC
T ss_pred cCCCEEEEecC------CccHHHHHHHHHH--hcCCCcEEEecccccHHHHHHHHhhcccEEeCCCCcHHHHHHHHhcCC
Confidence 46678898877 3433334433222 2349999985 99999999999984 34689999998887
Q ss_pred CCCCCCCCh--hHHHHHHHhHhhcCceeeecceeeccCCCHHHHHHHHHHHHHcCeEEEeeCCcceEEEeCCCchHHHHH
Q psy13810 298 PSVSCPLPP--VVSDQIRLWEGERERLTTSEGVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKF 375 (386)
Q Consensus 298 p~~~~~lP~--tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s~~~~~~v~~ya~~~g~llw~~~~kr~~~V~~~~h~~vr~f 375 (386)
++ +|- |..+=.+-|+.=.+-+++.++-.+ . -+|.+.+...+ +.-+.+-+.-=.-+++++|
T Consensus 105 ---~~-iPGv~TpsEi~~A~~~G~~~lK~fPa~~~----------G-~~~lk~l~~p~---p~i~~iptGGI~~~n~~~~ 166 (202)
T d1wa3a1 105 ---FY-MPGVMTPTELVKAMKLGHTILKLFPGEVV----------G-PQFVKAMKGPF---PNVKFVPTGGVNLDNVCEW 166 (202)
T ss_dssp ---EE-ECEECSHHHHHHHHHTTCCEEEETTHHHH----------H-HHHHHHHHTTC---TTCEEEEBSSCCTTTHHHH
T ss_pred ---ce-eCCcCcHHHHHHHHHCCCCEEEecchhhc----------C-HHHHHHHhCcc---cCCcEEeeCCCCHHHHHHH
Confidence 44 553 777888889988888888765322 2 26667654332 3333322222234669999
Q ss_pred HHh
Q psy13810 376 WVN 378 (386)
Q Consensus 376 ~k~ 378 (386)
++.
T Consensus 167 l~a 169 (202)
T d1wa3a1 167 FKA 169 (202)
T ss_dssp HHH
T ss_pred HHC
Confidence 874
No 5
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}
Probab=61.64 E-value=7.2 Score=33.77 Aligned_cols=123 Identities=17% Similarity=0.146 Sum_probs=84.8
Q ss_pred ceEEEeeceeEEEecCChHHHHHHHHHHHHHhccCceEEE---EeCHHHHHHHHHcCC-------CHHHHHHHHHhcCCC
Q psy13810 229 GFLIVETNFRVYAYTDSNLKVALIGLFCELMYRFPNLTVG---VLTRDSVRAALRSGI-------TAAQIIGFLRLHALP 298 (386)
Q Consensus 229 g~iIvETNfrvYAYT~S~LqiaiL~lF~~l~~rfPNlvvg---~iTReSVr~Al~~GI-------TA~QII~fL~~hAHp 298 (386)
|.=++|-=+| +|--... ...+..++|++.|| ++|++.+++|.+.|. +-..++.+-..+-.
T Consensus 42 Gi~~iEitl~------~p~a~~~---i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivsP~~~~~v~~~a~~~~i- 111 (216)
T d1mxsa_ 42 GIRTLEVTLR------SQHGLKA---IQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTPGITEDILEAGVDSEI- 111 (216)
T ss_dssp TCCEEEEESS------STHHHHH---HHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECSSCCHHHHHHHHHCSS-
T ss_pred CCCEEEEeCC------ChhHHHH---HHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEECCCCcHHHHHHHHhcCC-
Confidence 5555665554 4544444 45666689999999 899999999999995 46899999998887
Q ss_pred CCCCCCCh--hHHHHHHHhHhhcCceeeeccee-eccCCCHHHHHHHHHHHHHcCeEEEeeCCcceEEEeCCCchHHHHH
Q psy13810 299 SVSCPLPP--VVSDQIRLWEGERERLTTSEGVL-YSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVVTKQGHSDIKKF 375 (386)
Q Consensus 299 ~~~~~lP~--tV~dQIrLWe~Er~R~~~~~g~L-y~~f~s~~~~~~v~~ya~~~g~llw~~~~kr~~~V~~~~h~~vr~f 375 (386)
|. +|= |..+=...|+.--+-+|+.++-. .. .+|-+.+...+ +.-+.+-+.-=.-+++++|
T Consensus 112 --~~-iPGv~TpsEi~~A~~~G~~~vKlFPA~~~~g-----------~~~ikal~~p~---p~~~fiptGGV~~~n~~~y 174 (216)
T d1mxsa_ 112 --PL-LPGISTPSEIMMGYALGYRRFKLFPAEISGG-----------VAAIKAFGGPF---GDIRFCPTGGVNPANVRNY 174 (216)
T ss_dssp --CE-ECEECSHHHHHHHHTTTCCEEEETTHHHHTH-----------HHHHHHHHTTT---TTCEEEEBSSCCTTTHHHH
T ss_pred --Cc-cCCcCCHHHHHHHHHCCCCEEEecccccccc-----------HHHHHHHhccc---ccCceeccCCCCHHHHHHH
Confidence 44 553 78888899999999999988632 22 55666654333 3333333222234569999
Q ss_pred HHh
Q psy13810 376 WVN 378 (386)
Q Consensus 376 ~k~ 378 (386)
++.
T Consensus 175 l~~ 177 (216)
T d1mxsa_ 175 MAL 177 (216)
T ss_dssp HHS
T ss_pred Hhc
Confidence 875
No 6
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=53.81 E-value=5.2 Score=29.90 Aligned_cols=43 Identities=28% Similarity=0.376 Sum_probs=31.1
Q ss_pred ccccCCCCCHHHHHHHHHHhHcCceeeecCCCcceeechhhhhh
Q psy13810 173 TDYSTEGMSDKLQVFLQHLREFGLVYQRKRKAGRFYPTKLALNM 216 (386)
Q Consensus 173 ~~Y~~~~ls~~q~~~L~~L~~~GLvy~~~~~~~~fypT~La~~l 216 (386)
+.+...--+-+.++.|..|.+.|+|.+.-..+++ .||..+..+
T Consensus 31 ~~~~l~~S~aTIRn~m~~LE~~G~l~~~h~s~Gr-iPT~~g~r~ 73 (87)
T d1stza1 31 EVSNIEFSSATIRNDMKKLEYLGYIYQPHTSAGR-IPTDKGLRF 73 (87)
T ss_dssp HHSCCCSCHHHHHHHHHHHHHTTSEECCSSCSCB-EECHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHCCcccCCCCCCCC-cccHHHHHH
Confidence 3344444478999999999999999886544444 699887643
No 7
>d1kwma2 d.58.3.1 (A:1A-95A) Procarboxypeptidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.54 E-value=20 Score=26.29 Aligned_cols=55 Identities=7% Similarity=0.207 Sum_probs=42.9
Q ss_pred cceeec-cCCCHHHHHHHHHHHHHcCeEEEeeCCc--------ceEEEeCCCchHHHHHHHhhh
Q psy13810 326 EGVLYS-QFVSQADFEKLRDYAQDLGVLTWQNEKK--------RTVVVTKQGHSDIKKFWVNHQ 380 (386)
Q Consensus 326 ~g~Ly~-~f~s~~~~~~v~~ya~~~g~llw~~~~k--------r~~~V~~~~h~~vr~f~k~~~ 380 (386)
.-=+|+ ...|.++.+.+.+.+++.++-.|..+.. -.+.|+++..+.+++|+++..
T Consensus 9 g~qV~rV~~~~~~q~~~L~~L~~~~~ldfW~~~s~~~~~~g~~vdv~V~p~~~~~~~~~L~~~~ 72 (95)
T d1kwma2 9 GEKVFRVNVEDENHINIIRELASTTQIDFWKPDSVTQIKPHSTVDFRVKAEDTVTVENVLKQNE 72 (95)
T ss_dssp TCEEEEEEECSHHHHHHHHHHHHHSCEEEEESSSGGGCCSSEEEEEEECGGGHHHHHHHHHHTT
T ss_pred CCEEEEEEeCCHHHHHHHHHHhccCceEecCCCCccccCCCCeEEEEECHHHHHHHHHHHHHCC
Confidence 333455 3467888999999999999999986532 369999999999999998754
No 8
>d1wj5a_ a.4.5.59 (A:) OB fold-containing protein 1, Obfc1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.93 E-value=8.2 Score=30.57 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=27.3
Q ss_pred HHHHHHHHHhHcCceeeecC-CCcceeechhhhhhccC
Q psy13810 183 KLQVFLQHLREFGLVYQRKR-KAGRFYPTKLALNMATR 219 (386)
Q Consensus 183 ~q~~~L~~L~~~GLvy~~~~-~~~~fypT~La~~l~s~ 219 (386)
-.++.+.-|.|-|+||++.. .+..||.|.==-.|-+|
T Consensus 79 iFKeAi~~Lqe~G~VFqK~~~~D~lYyVT~qDKdLhs~ 116 (120)
T d1wj5a_ 79 VFKNALQLLQEKGLVFQRDSGSDKLYYVTTKDKDLQSG 116 (120)
T ss_dssp HHHHHHHHHHHHTSEECSSCSSSCCBEECSSSCCCCSC
T ss_pred HHHHHHHHHHHCCEEEecCCCccceEEeeccccccccC
Confidence 34577888999999999976 45689988755444444
No 9
>d2boaa2 d.58.3.1 (A:4-99) Procarboxypeptidase A {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.05 E-value=37 Score=24.64 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=42.7
Q ss_pred eeeecceeecc-CCCHHHHHHHHHHHHH--cCeEEEeeCCc----ceEEEeCCCchHHHHHHHhhh
Q psy13810 322 LTTSEGVLYSQ-FVSQADFEKLRDYAQD--LGVLTWQNEKK----RTVVVTKQGHSDIKKFWVNHQ 380 (386)
Q Consensus 322 ~~~~~g~Ly~~-f~s~~~~~~v~~ya~~--~g~llw~~~~k----r~~~V~~~~h~~vr~f~k~~~ 380 (386)
.+|..--+|+= -.|.++.+.+.+.... .++=.|..+.. -.+.|++...+.+++|+++..
T Consensus 2 ~~y~G~qV~rV~p~~~~q~~~L~~L~~~~~~~ldfW~~p~~~~~~vdv~V~p~~~~~~~~~L~~~~ 67 (94)
T d2boaa2 2 EKFFGDQVLRINVRNGDEISKLSQLVNSNNLKLNFWKSPSSFNRPVDVLVPSVSLQAFKSFLRSQG 67 (94)
T ss_dssp CCCTTCEEEEECCCSHHHHHHHHHHTTTTGGGCEEEECCCSSSSCEEEEECGGGHHHHHHHHHHTT
T ss_pred ccccCCEEEEEEcCCHHHHHHHHHHHhcCCCCeeeeCCCCCCCCeEEEEECHHHHHHHHHHHHHCC
Confidence 34444556663 3467888888888554 57778987543 479999999999999998764
No 10
>d1jqga2 d.58.3.1 (A:4P-100P) Procarboxypeptidase A {Cotton bollworm (Helicoverpa armigera) [TaxId: 29058]}
Probab=29.94 E-value=48 Score=23.84 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHcCeEEEeeCC---cceEEEeCCCchHHHHHHHhhh
Q psy13810 334 VSQADFEKLRDYAQDLGVLTWQNEK---KRTVVVTKQGHSDIKKFWVNHQ 380 (386)
Q Consensus 334 ~s~~~~~~v~~ya~~~g~llw~~~~---kr~~~V~~~~h~~vr~f~k~~~ 380 (386)
.|.++.+.+.+..+..++-.|..+. .-.+.|+++..+.+++|+++..
T Consensus 15 ~~~~q~~~L~~le~~~~~dfW~~~~~~~~vdI~V~p~~~~~f~~~L~~~~ 64 (92)
T d1jqga2 15 ASMDQVKLVHDFENDLMLDVWSDAVPGRPGKVLVPKFKREIFENFLKQSG 64 (92)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEECCBTTBCEEEEECGGGHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhccCCcEecCCCCCCeEEEEECHHHHHHHHHHHHHcC
Confidence 6788899999999999999997532 2489999999999999998754
No 11
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.66 E-value=21 Score=26.74 Aligned_cols=34 Identities=12% Similarity=0.280 Sum_probs=25.6
Q ss_pred cCeEEEeeCCcceEEEeCCCchHHHHHHHhhhcC
Q psy13810 349 LGVLTWQNEKKRTVVVTKQGHSDIKKFWVNHQKG 382 (386)
Q Consensus 349 ~g~llw~~~~kr~~~V~~~~h~~vr~f~k~~~~~ 382 (386)
..+.-|.+.++..|=......+.|.+-|-.+|+.
T Consensus 18 ~~~I~Wt~~~~g~F~fv~~~~e~VA~lWG~~K~N 51 (88)
T d1puee_ 18 KDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGN 51 (88)
T ss_dssp TTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTC
T ss_pred CCceEeeCCCCceEEEEeCCHHHHHHHHHhhcCC
Confidence 5677899999887765554467899999877754
No 12
>d2v9va2 a.4.5.35 (A:438-510) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=27.01 E-value=58 Score=22.35 Aligned_cols=62 Identities=21% Similarity=0.202 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhccCceEEEEeCHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCCChhHHHHHHHhHhhcCceeeec
Q psy13810 247 LKVALIGLFCELMYRFPNLTVGVLTRDSVRAALRSGITAAQIIGFLRLHALPSVSCPLPPVVSDQIRLWEGERERLTTSE 326 (386)
Q Consensus 247 LqiaiL~lF~~l~~rfPNlvvg~iTReSVr~Al~~GITA~QII~fL~~hAHp~~~~~lP~tV~dQIrLWe~Er~R~~~~~ 326 (386)
++-++++...+...+.| ++-||+.+.+.+-+. +. +|+.+.+.+--+-.+.++++...
T Consensus 6 l~~~i~~~L~~fH~~~P---------------~~~G~~keeLr~~l~-------~~-~~~~~f~~lL~~l~~~g~l~~~g 62 (73)
T d2v9va2 6 WWQAVTRALEEFHSRYP---------------LRPGLAREELRSRYF-------SR-LPARVYQALLEEWSREGRLQLAA 62 (73)
T ss_dssp HHHHHHHHHHHHHHHCT---------------TSSCEEHHHHHHHHC-------TT-SCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHHHHHHHHCc---------------cccCCCHHHHHHHhc-------cc-CCHHHHHHHHHHHHHCCChheeC
Confidence 44456666666666666 456788888777654 44 88888888888888888888888
Q ss_pred ceeec
Q psy13810 327 GVLYS 331 (386)
Q Consensus 327 g~Ly~ 331 (386)
+++.-
T Consensus 63 ~~v~L 67 (73)
T d2v9va2 63 NTVAL 67 (73)
T ss_dssp SEEEE
T ss_pred CEEEC
Confidence 77653
No 13
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.75 E-value=58 Score=24.50 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=36.6
Q ss_pred CcHHHHHHHHhcCCCCCccccccc-hhhccccchhHHHHHHHHHHHHH
Q psy13810 104 ISADAVRTLFNEGAENPVITKDGF-QFLLLETPAQVWYFILKYLETVE 150 (386)
Q Consensus 104 ~s~~v~~lL~~~g~~~~~IT~~GF-qFLL~d~~~QvW~lll~yl~~~e 150 (386)
+.+.+...+...++ ...|+...| +||..|+..-+|-=+++=|..+|
T Consensus 50 ie~sv~sCF~~~~~-~~~i~~~~FL~wl~~ePq~LvWLp~lHRla~aE 96 (97)
T d1eg3a2 50 IEPSVRSCFQFANN-KPEIEAALFLDWMRLEPQSMVWLPVLHRVAAAE 96 (97)
T ss_dssp CHHHHHHHHHHTTT-CSCBCHHHHHHHHHTCCTTTTHHHHHHHHHHHC
T ss_pred chHHHHHHHhccCC-CCcccHHHHHHHHHhCCCceehHHHHHHHHHhc
Confidence 34678888876663 346999999 99999999999988888776654
No 14
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=23.77 E-value=30 Score=24.16 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=36.7
Q ss_pred ccccchhHHHHHHHHHHHHHhcCC--ChhhHHHHHHhhccCCCCccccCCCCCHHHHHHHHHHhHcCceeeec
Q psy13810 131 LLETPAQVWYFILKYLETVESKGL--DLVECLTFLFQLKFSTFGTDYSTEGMSDKLQVFLQHLREFGLVYQRK 201 (386)
Q Consensus 131 L~d~~~QvW~lll~yl~~~e~~g~--~~~~~L~flf~L~~~~~G~~Y~~~~ls~~q~~~L~~L~~~GLvy~~~ 201 (386)
|-++..+++.++..|+ ++.|. ...|+-. .+... -+.+....|..|.+.|+|....
T Consensus 3 LT~rQ~~vL~~I~~~~---~~~G~~Ps~rei~~------------~~g~~-S~stv~~~l~~Le~kG~I~r~~ 59 (71)
T d1jhfa1 3 LTARQQEVFDLIRDHI---SQTGMPPTRAEIAQ------------RLGFR-SPNAAEEHLKALARKGVIEIVS 59 (71)
T ss_dssp CCHHHHHHHHHHHHHH---HHHSSCCCHHHHHH------------HTTCS-SHHHHHHHHHHHHHTTSEEECS
T ss_pred CCHHHHHHHHHHHHHH---HHhCCCCCHHHHHH------------HcCCC-CHHHHHHHHHHHHHCcCeecCC
Confidence 4566788899999998 55564 4444433 11111 2456889999999999997653
No 15
>d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=22.97 E-value=20 Score=25.08 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHhHcCceeeecCCCccee
Q psy13810 180 MSDKLQVFLQHLREFGLVYQRKRKAGRFY 208 (386)
Q Consensus 180 ls~~q~~~L~~L~~~GLvy~~~~~~~~fy 208 (386)
..-+|-++=+||+++|+|..+..++...|
T Consensus 33 ~~vTQaTlSRDL~eLg~vKv~~~~g~~~Y 61 (63)
T d2p5ka1 33 YKVTQATVSRDIKELHLVKVPTNNGSYKY 61 (63)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEETTTEEEE
T ss_pred CCeeHHHHHHHHHHhCCEEeeCCCCcEEe
Confidence 44567888999999999998876555555
No 16
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]}
Probab=21.07 E-value=40 Score=25.69 Aligned_cols=99 Identities=13% Similarity=0.179 Sum_probs=54.2
Q ss_pred HHHHHHHhccCCCccHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHh--CCCCCCCCCcccccCC--CCCChhHHHH
Q psy13810 7 KHYVIRLLFVEQPVPQAVIASWLSKTHAKEHKEATDTLTELRRNAKVALL--GGGKPWSMSAKLEVDS--KARDLDFLNQ 82 (386)
Q Consensus 7 k~~vmrlL~~~~~v~~~~~~~Wv~~~~~~~~~~a~~~L~~L~~~lr~aL~--ggg~~~~~~~~~~~d~--~~~~~~~Ld~ 82 (386)
-.-||+.||..+|++..++-.=+..+..=........|.+|.+ |-.|. .-|...-..+.++.+. .....+++|+
T Consensus 8 E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~tTv~T~L~rL~~--Kg~l~~~~~gr~~~Y~~~v~~~~~~~~~~~~~~~~ 85 (122)
T d1sd4a_ 8 EWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYK--KEIIKRYKSENIYFYSSNIKEDDIKMKTAKTFLNK 85 (122)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHH--TTSEEEEEETTEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhhccCCCcHhHHHHHHHHHHh--hhceeeeccCCeEEEeecCCHHHHHHHHHHHHHHH
Confidence 3469999999999999888776654332245556667776662 00010 0011000000011110 0112457888
Q ss_pred HHHHhHHHHHHhHcCCCCCCCCcHHHHH
Q psy13810 83 YALERWECILRFMVGSQQTEGISADAVR 110 (386)
Q Consensus 83 ya~~~WE~iL~~mv~s~~~~~~s~~v~~ 110 (386)
+.......++.++++.. ..|.+-++
T Consensus 86 ~~~gs~~~lv~~~~~~~---~ls~~el~ 110 (122)
T d1sd4a_ 86 LYGGDMKSLVLNFAKNE---ELNNKEIE 110 (122)
T ss_dssp HHTTCHHHHHHHHHHTT---CSCHHHHH
T ss_pred HhCCCHHHHHHHHHhCC---CCCHHHHH
Confidence 88888888888888653 45544333
No 17
>d1b4aa1 a.4.5.3 (A:4-78) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=21.05 E-value=30 Score=24.86 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHhHcCceeeecCCCcceee
Q psy13810 180 MSDKLQVFLQHLREFGLVYQRKRKAGRFYP 209 (386)
Q Consensus 180 ls~~q~~~L~~L~~~GLvy~~~~~~~~fyp 209 (386)
.+-||-++=+||+++|+|..+..++...|-
T Consensus 31 i~vTQaTlSRDL~eLg~vKv~~~~g~~~Y~ 60 (75)
T d1b4aa1 31 FNVTQATVSRDIKEMQLVKVPMANGRYKYS 60 (75)
T ss_dssp CCCCHHHHHHHHHHTTCEEEECSSSCEEEE
T ss_pred CceeHHHHHHHHHHhCCEEeeCCCCcEEEe
Confidence 445688889999999999988766666663
Done!