RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13810
         (386 letters)



>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 190

 Score = 29.0 bits (64), Expect = 0.64
 Identities = 6/53 (11%), Positives = 14/53 (26%), Gaps = 1/53 (1%)

Query: 88  WECILRFMVGSQQTEGISADAVRTLFNEGAENPVITKDGFQFLLLETPAQVWY 140
            EC+  F+  S          +     +     +I  D   +    +   +  
Sbjct: 3   IECLFSFIC-SSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAG 54


>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 220

 Score = 28.2 bits (62), Expect = 1.4
 Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 78  DFLNQYALERWECILRFMVGSQQTEGISADAVRTLFNEGAENP------VITKDGFQFLL 131
              +  A+  +E   R  +  ++ + + ++A+         +       VI+K+   FL 
Sbjct: 128 GSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLR 187

Query: 132 LETPAQVWYFILK 144
             T        L 
Sbjct: 188 PYTVPNKKGTRLG 200


>d1qaza_ a.102.3.1 (A:) Alginate lyase A1-III {Sphingomonas sp., A1
           [TaxId: 28214]}
          Length = 351

 Score = 26.9 bits (59), Expect = 4.1
 Identities = 7/43 (16%), Positives = 13/43 (30%)

Query: 219 RGTLKQIREPGFLIVETNFRVYAYTDSNLKVALIGLFCELMYR 261
              +  I E G  + E      +    N  +  + +  E   R
Sbjct: 218 VQAMGLINEDGSFVHEMTRHEQSLHYQNYAMLPLTMIAETASR 260


>d1kxpd1 a.126.1.1 (D:17-214) Vitamin D binding protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 198

 Score = 26.4 bits (58), Expect = 4.9
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 328 VLYSQFVSQADFEKLRDYAQDL 349
           VLYS+      FE++    +++
Sbjct: 30  VLYSRKFPSGTFEQVSQLVKEV 51


>d1n5ua1 a.126.1.1 (A:2-196) Serum albumin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 195

 Score = 26.4 bits (58), Expect = 5.2
 Identities = 4/22 (18%), Positives = 11/22 (50%)

Query: 328 VLYSQFVSQADFEKLRDYAQDL 349
           + ++Q++ Q  FE       ++
Sbjct: 24  IAFAQYLQQCPFEDHVKLVNEV 45


>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 196

 Score = 25.9 bits (56), Expect = 7.9
 Identities = 29/162 (17%), Positives = 49/162 (30%), Gaps = 6/162 (3%)

Query: 203 KAGRFYPTKLALNMATRGTLKQIREPGFLIVETNFRVYAYTDSNLKVALIGLFCELMYRF 262
           KAG  Y T   L+ +    + +     +L         AY       +  G+F  L YR 
Sbjct: 19  KAGNIYSTGYELDGSAY-VISKHISNTWLWDRVRVSGGAYGGFCDFDSHSGVFSYLSYRD 77

Query: 263 PNLTVGVLTRDSVRAALRSGITAAQIIGFLRLHALPSVSCPLPPVVSDQIRLWEGERERL 322
           PNL   +   D     LR      + +    +  +  V     P  +            +
Sbjct: 78  PNLLKTLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDVDSYQLP-DAKGYSSLLRHLLGV 136

Query: 323 TTSEGVLYSQFVSQADFEKLRDYAQDLGVLTWQNEKKRTVVV 364
           T  E     + +     +  +D+AQ +         K   V 
Sbjct: 137 TDEERQRKREEILTTSLKDFKDFAQAI----DVVRDKGVAVA 174


>d1n5ua2 a.126.1.1 (A:197-388) Serum albumin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 192

 Score = 25.6 bits (56), Expect = 9.5
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 328 VLYSQFVSQADFEKLRDYAQDL 349
              SQ   +A+F ++     DL
Sbjct: 21  ARLSQRFPKAEFAEVSKLVTDL 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,365,097
Number of extensions: 61141
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 13
Length of query: 386
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,213,086
Effective search space: 362712714
Effective search space used: 362712714
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)