BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13811
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NWL|A Chain A, Crystal Structure Of Gltph In Complex With L-Asp
pdb|2NWL|B Chain B, Crystal Structure Of Gltph In Complex With L-Asp
pdb|2NWL|C Chain C, Crystal Structure Of Gltph In Complex With L-Asp
Length = 422
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 33/218 (15%)
Query: 38 WSERERMYVQFPGELFLKMLKCLIVPLLVSSIVSAIGSLDLSLSKRVGFRSIAYYCATTS 97
++ YV+ G+LF+++LK L++P++ +S+V S+ + RVG + + YY T++
Sbjct: 35 YAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSA 94
Query: 98 IAVVEGIILVCTIRPGVG-HASMKGAQAGNYSKXXXXXXXXXXXXRVLFYILCVTELYFI 156
AV GII+ PG G H ++ G Q F L I
Sbjct: 95 FAVTLGIIMARLFNPGAGIHLAVGGQQ---------------------FQPHQAPPLVHI 133
Query: 157 LCVTELWQMRGEWVVGSNVLGLVFFSIAMGIAIA--------RIGKAGKPLLSVFESLSE 208
L G G VL +FF+I +GIAI ++ K+ + LL L+E
Sbjct: 134 LLDIVPTNPFGALANG-QVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAE 192
Query: 209 VVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQL 246
+ I V+ +P G+F L+A + + H VG+L
Sbjct: 193 AMYKIVNGVMQYAPIGVFALIAYVMAEQG--VHVVGEL 228
>pdb|1XFH|A Chain A, Structure Of Glutamate Transporter Homolog From Pyrococcus
Horikoshii
pdb|1XFH|B Chain B, Structure Of Glutamate Transporter Homolog From Pyrococcus
Horikoshii
pdb|1XFH|C Chain C, Structure Of Glutamate Transporter Homolog From Pyrococcus
Horikoshii
pdb|2NWW|A Chain A, Crystal Structure Of Gltph In Complex With Tboa
pdb|2NWW|B Chain B, Crystal Structure Of Gltph In Complex With Tboa
pdb|2NWW|C Chain C, Crystal Structure Of Gltph In Complex With Tboa
pdb|2NWX|A Chain A, Crystal Structure Of Gltph In Complex With L-Aspartate And
Sodium Ions
pdb|2NWX|B Chain B, Crystal Structure Of Gltph In Complex With L-Aspartate And
Sodium Ions
pdb|2NWX|C Chain C, Crystal Structure Of Gltph In Complex With L-Aspartate And
Sodium Ions
Length = 422
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 33/219 (15%)
Query: 37 AWSERERMYVQFPGELFLKMLKCLIVPLLVSSIVSAIGSLDLSLSKRVGFRSIAYYCATT 96
++ YV+ G+LF+++LK L++P++ +S+V S+ + RVG + + YY T+
Sbjct: 34 GYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTS 93
Query: 97 SIAVVEGIILVCTIRPGVG-HASMKGAQAGNYSKXXXXXXXXXXXXRVLFYILCVTELYF 155
+ AV GII+ PG G H ++ G Q F L
Sbjct: 94 AFAVTLGIIMARLFNPGAGIHLAVGGQQ---------------------FQPHQAPPLVH 132
Query: 156 ILCVTELWQMRGEWVVGSNVLGLVFFSIAMGIAIA--------RIGKAGKPLLSVFESLS 207
IL G G VL +FF+I +GIAI ++ K+ + LL L+
Sbjct: 133 ILLDIVPTNPFGALANG-QVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLA 191
Query: 208 EVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQL 246
E + I V+ +P G+F L+A + + H VG+L
Sbjct: 192 EAMYKIVNGVMQYAPIGVFALIAYVMAEQG--VHVVGEL 228
>pdb|3V8F|A Chain A, Crystal Structure Of Crosslinked Gltph V216c-M385c Mutant
pdb|3V8F|B Chain B, Crystal Structure Of Crosslinked Gltph V216c-M385c Mutant
pdb|3V8F|C Chain C, Crystal Structure Of Crosslinked Gltph V216c-M385c Mutant
Length = 422
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 33/219 (15%)
Query: 37 AWSERERMYVQFPGELFLKMLKCLIVPLLVSSIVSAIGSLDLSLSKRVGFRSIAYYCATT 96
++ YV+ G+LF+++LK L++P++ +S+V S+ + RVG + + YY T+
Sbjct: 34 GYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTS 93
Query: 97 SIAVVEGIILVCTIRPGVG-HASMKGAQAGNYSKXXXXXXXXXXXXRVLFYILCVTELYF 155
+ AV GII+ PG G H ++ G Q F L
Sbjct: 94 AFAVTLGIIMARLFNPGAGIHLAVGGQQ---------------------FQPHQAPPLVH 132
Query: 156 ILCVTELWQMRGEWVVGSNVLGLVFFSIAMGIAIA--------RIGKAGKPLLSVFESLS 207
IL G G VL +FF+I +GIAI ++ K+ + LL L+
Sbjct: 133 ILLDIVPTNPFGALANG-QVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLA 191
Query: 208 EVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQL 246
E + I V+ +P G+F L+A + + H VG+L
Sbjct: 192 EAMYKIVNGVMQYAPIGVFALIAYCMAEQG--VHVVGEL 228
>pdb|3V8G|A Chain A, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|B Chain B, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|C Chain C, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|D Chain D, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|E Chain E, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|F Chain F, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
Length = 422
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 33/219 (15%)
Query: 37 AWSERERMYVQFPGELFLKMLKCLIVPLLVSSIVSAIGSLDLSLSKRVGFRSIAYYCATT 96
++ YV+ G+LF+++LK L++P++ +S+V S+ + RVG + + YY T+
Sbjct: 34 GYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTS 93
Query: 97 SIAVVEGIILVCTIRPGVG-HASMKGAQAGNYSKXXXXXXXXXXXXRVLFYILCVTELYF 155
+ AV GII+ PG G H ++ G Q F L
Sbjct: 94 AFAVTLGIIMARLFNPGAGIHLAVGGQQ---------------------FQPHQAPPLVH 132
Query: 156 ILCVTELWQMRGEWVVGSNVLGLVFFSIAMGIAIA--------RIGKAGKPLLSVFESLS 207
IL G G VL +FF+I +GIAI ++ K+ + LL L+
Sbjct: 133 ILLDIVPTNPFGALANG-QVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLA 191
Query: 208 EVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQL 246
E + I V+ +P G+F L+A + + H VG+L
Sbjct: 192 EAMYKICNGVMQYAPIGVFALIAYVMAEQG--VHVVGEL 228
>pdb|3KBC|A Chain A, Crystal Structure Of Gltph K55c-A364c Mutant Crosslinked
With Divalent Mercury
pdb|3KBC|B Chain B, Crystal Structure Of Gltph K55c-A364c Mutant Crosslinked
With Divalent Mercury
pdb|3KBC|C Chain C, Crystal Structure Of Gltph K55c-A364c Mutant Crosslinked
With Divalent Mercury
Length = 425
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 33/219 (15%)
Query: 37 AWSERERMYVQFPGELFLKMLKCLIVPLLVSSIVSAIGSLDLSLSKRVGFRSIAYYCATT 96
++ YV+ G+LF+++L L++P++ +S+V S+ + RVG + + YY T+
Sbjct: 34 GYAHAVHTYVKPFGDLFVRLLCMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTS 93
Query: 97 SIAVVEGIILVCTIRPGVG-HASMKGAQAGNYSKXXXXXXXXXXXXRVLFYILCVTELYF 155
+ AV GII+ PG G H ++ G Q F L
Sbjct: 94 AFAVTLGIIMARLFNPGAGIHLAVGGQQ---------------------FQPHQAPPLVH 132
Query: 156 ILCVTELWQMRGEWVVGSNVLGLVFFSIAMGIAIA--------RIGKAGKPLLSVFESLS 207
IL G G VL +FF+I +GIAI ++ K+ + LL L+
Sbjct: 133 ILLDIVPTNPFGALANG-QVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLA 191
Query: 208 EVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQL 246
E + I V+ +P G+F L+A + + H VG+L
Sbjct: 192 EAMYKIVNGVMQYAPIGVFALIAYVMAEQG--VHVVGEL 228
>pdb|3CMQ|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanine
Trna Synthetase
pdb|3HFV|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanyl-Trna
Synthetase Complexed With M-Tyrosine
pdb|3TEG|A Chain A, Bacterial And Eukaryotic Phenylalanyl-Trna Synthetases
Catalyze Misaminoacylation Of Trnaphe With
3,4-Dihydroxy-L-Phenylalanine (L- Dopa)
pdb|3TUP|A Chain A, Crystal Structure Of Human Mitochondrial Phers Complexed
With Trnaphe In The Active Open State
Length = 415
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Query: 192 IGKAGKPLLSVFESLSEVVMTITTW 216
+G+ G PL SV+++LS VV TTW
Sbjct: 66 VGRFGTPLFSVYDNLSPVV---TTW 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.140 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,305,279
Number of Sequences: 62578
Number of extensions: 238448
Number of successful extensions: 571
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 556
Number of HSP's gapped (non-prelim): 11
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)