Query psy13811
Match_columns 297
No_of_seqs 143 out of 1157
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 21:06:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3787|consensus 100.0 4.4E-57 9.6E-62 426.6 21.6 264 33-297 36-315 (507)
2 PRK01663 C4-dicarboxylate tran 100.0 1.4E-47 2.9E-52 372.4 27.4 238 40-297 28-269 (428)
3 PRK11283 gltP glutamate/aspart 100.0 6.3E-47 1.4E-51 368.6 27.3 235 43-297 38-280 (437)
4 PRK13027 C4-dicarboxylate tran 100.0 8.6E-47 1.9E-51 366.1 27.7 238 40-297 27-269 (421)
5 COG1301 GltP Na+/H+-dicarboxyl 100.0 8.9E-47 1.9E-51 362.4 26.7 231 43-297 32-265 (415)
6 PF00375 SDF: Sodium:dicarboxy 100.0 2.3E-46 5.1E-51 360.9 24.1 239 37-297 19-258 (390)
7 PRK13628 serine/threonine tran 100.0 3E-42 6.5E-47 332.7 27.0 229 40-297 35-265 (402)
8 COG1823 Predicted Na+/dicarbox 100.0 2.2E-36 4.9E-41 280.3 21.1 244 35-297 55-309 (458)
9 PRK14695 serine/threonine tran 100.0 9.8E-29 2.1E-33 231.4 21.1 176 94-297 2-179 (319)
10 COG3633 SstT Na+/serine sympor 99.9 2.1E-21 4.5E-26 176.2 12.3 256 14-297 6-265 (407)
11 PF03176 MMPL: MMPL family; I 65.5 36 0.00079 31.7 8.5 35 242-276 272-306 (333)
12 PF00375 SDF: Sodium:dicarboxy 53.1 1.6E+02 0.0034 28.5 10.7 55 179-237 5-59 (390)
13 PRK12460 2-keto-3-deoxyglucona 44.7 2.8E+02 0.0061 26.3 11.9 54 60-113 46-99 (312)
14 TIGR00917 2A060601 Niemann-Pic 41.6 3.5E+02 0.0077 30.6 12.4 93 173-272 1101-1203(1204)
15 TIGR00921 2A067 The (Largely A 40.3 2.8E+02 0.0061 28.8 11.0 28 242-269 690-717 (719)
16 TIGR02848 spore_III_AC stage I 39.8 1.4E+02 0.0031 21.5 7.4 53 214-272 3-55 (64)
17 PF04238 DUF420: Protein of un 39.0 79 0.0017 26.1 5.3 44 55-99 82-125 (133)
18 PF02460 Patched: Patched fami 37.9 4.6E+02 0.0099 27.9 12.2 92 173-272 697-797 (798)
19 COG3493 CitS Na+/citrate sympo 37.7 1.7E+02 0.0037 28.8 7.9 56 55-114 111-166 (438)
20 TIGR00783 ccs citrate carrier 37.0 1.8E+02 0.0038 28.1 8.0 114 64-199 30-150 (347)
21 TIGR02829 spore_III_AE stage I 35.5 1.3E+02 0.0027 29.5 6.9 56 51-106 195-254 (381)
22 PF03390 2HCT: 2-hydroxycarbox 34.5 2.8E+02 0.0061 27.4 9.1 119 142-291 75-198 (414)
23 COG1301 GltP Na+/H+-dicarboxyl 30.7 5.4E+02 0.012 25.4 12.1 66 174-243 7-72 (415)
24 PRK10555 aminoglycoside/multid 30.4 4.1E+02 0.0088 29.4 10.6 94 173-275 921-1029(1037)
25 PRK01663 C4-dicarboxylate tran 29.8 5.5E+02 0.012 25.3 11.0 54 179-238 13-66 (428)
26 PRK09579 multidrug efflux prot 28.0 4.3E+02 0.0092 29.2 10.2 93 172-273 382-489 (1017)
27 PF03390 2HCT: 2-hydroxycarbox 27.6 6.1E+02 0.013 25.1 12.6 109 173-284 28-156 (414)
28 TIGR00915 2A0602 The (Largely 27.3 3.8E+02 0.0082 29.7 9.7 93 173-274 922-1029(1044)
29 PF09546 Spore_III_AE: Stage I 25.7 5.8E+02 0.013 24.2 11.8 102 193-296 16-122 (328)
30 PRK10614 multidrug efflux syst 25.2 7.3E+02 0.016 27.4 11.4 93 173-274 384-491 (1025)
31 PF04346 EutH: Ethanolamine ut 25.1 2.2E+02 0.0047 27.6 6.4 40 173-215 170-209 (354)
32 PRK10503 multidrug efflux syst 24.6 5.2E+02 0.011 28.7 10.1 93 172-273 915-1023(1040)
33 TIGR00921 2A067 The (Largely A 24.3 5.2E+02 0.011 26.8 9.8 32 242-273 317-348 (719)
34 PF05562 WCOR413: Cold acclima 23.3 1.7E+02 0.0038 25.6 4.9 48 36-83 40-97 (187)
35 PRK13628 serine/threonine tran 23.2 7.1E+02 0.015 24.3 10.7 80 173-258 14-95 (402)
36 TIGR00833 actII Transport prot 23.1 9.3E+02 0.02 26.2 11.6 35 244-278 874-909 (910)
37 TIGR00918 2A060602 The Eukaryo 21.6 1.2E+03 0.026 26.4 13.0 94 173-273 1017-1118(1145)
38 PRK15086 ethanolamine utilizat 20.4 3E+02 0.0065 26.8 6.4 38 173-213 171-208 (372)
No 1
>KOG3787|consensus
Probab=100.00 E-value=4.4e-57 Score=426.56 Aligned_cols=264 Identities=45% Similarity=0.745 Sum_probs=233.9
Q ss_pred cCCCccchhhhhhccccHHHHHHHHhhhHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy13811 33 SMPDAWSERERMYVQFPGELFLKMLKCLIVPLLVSSIVSAIGSLDLSLSKRVGFRSIAYYCATTSIAVVEGIILVCTIRP 112 (297)
Q Consensus 33 ~~~~~~~~~~~~~i~~~G~lfi~lLkm~VvPLVf~sii~gI~~l~~~~~grig~~tl~~~l~tt~iA~~iGl~~~~~~~p 112 (297)
-.+.+++++...++++|||+|+|+|||+|+|||++|+++|.+++|.|..||+|.|++.||+.||++|+++|++++..+||
T Consensus 36 LR~~~ls~~~i~yi~FPGElfmrmLkmmILPLI~SSlisgla~LDa~~sGrlg~~av~YY~~TT~~Av~lGI~lV~~IhP 115 (507)
T KOG3787|consen 36 LRPLSLSPDEIMYISFPGELLMRMLKMMILPLIVSSLISGLASLDAKASGRLGMRAVVYYMSTTIIAVILGIALVLIIHP 115 (507)
T ss_pred ecCCCCChhheeeeeCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHHHHHheeEEecC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCccc-ccccccchHHhHhhhcchhhHHHH-------HHh---hhhhhh---hhhcc--ccccCCchH
Q psy13811 113 GVGHASMKGAQAGNYSK-TSLTTDTLMDLSRVLFYILCVTEL-------YFI---LCVTEL---WQMRG--EWVVGSNVL 176 (297)
Q Consensus 113 G~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~liP~n~f~~l-------~~~---~n~~~~---~~~~~--~~~~~~n~L 176 (297)
|.+... .+.+.++..+ +.+..|+++|+++|+||+|++++= |.+ .++.++ ..+.. .+.+|.|+|
T Consensus 116 G~~~~~-~~~~~~~~~~~~vs~~DtfLDLiRNmFPeNlvqAtf~q~~T~y~~~~~~~~~~~t~~~~~~~~~~~~~GmNvL 194 (507)
T KOG3787|consen 116 GDPTKK-NELGREGLIDSNVSTLDTFLDLIRNMFPENLVQATFQQYQTKYKPVTKASPGNATEEALPKGVPGYTDGMNVL 194 (507)
T ss_pred CChhhh-cccCcccccccccchHHHHHHHHHhhCcHHHHHHHHHHHeeEEEeecccCCCCccccccccCccccccCccch
Confidence 997532 1222122222 556679999999999999987763 211 122211 11222 567899999
Q ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Q psy13811 177 GLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQLGLYFITVLLG 256 (297)
Q Consensus 177 ~iivFAi~~G~al~~~~~~~~~l~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~~~~~l~~~l~~~vl~v~~~ 256 (297)
++++||+.||++++++|||++.+.+||+++++++||++.|+|||+|+|+.+++|+++.+.++++...++|++|+.++.+|
T Consensus 195 GlVvF~~~fGivig~lG~~g~~lv~FF~~L~e~iMklV~~iMWy~PvGI~fLIagkIlem~Dl~~~~~~Lg~Yv~TVi~G 274 (507)
T KOG3787|consen 195 GLVVFCIVFGIVIGKLGEKGQVLVDFFNSLNEAIMKLVSWIMWYSPVGILFLIAGKILEMEDLGVTARQLGMYVVTVILG 274 (507)
T ss_pred hHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHhhhccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHhHHHHHhhhcccCC
Q psy13811 257 LLIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTASR 297 (297)
Q Consensus 257 ~~i~~~vvlpli~~~~~~~nP~~f~~~~~~all~Af~T~SS 297 (297)
+++|.++++|++|++++|+||++|++++..|++|||+|+||
T Consensus 275 L~iH~~i~lPliYF~~TrkNP~~f~~Gm~Qal~TA~gTsSS 315 (507)
T KOG3787|consen 275 LFIHGFIVLPLIYFVVTRKNPFRFIAGLLQALATAFGTASS 315 (507)
T ss_pred HHHHHHHHhhheeEEEEccChHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999997
No 2
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=100.00 E-value=1.4e-47 Score=372.42 Aligned_cols=238 Identities=24% Similarity=0.414 Sum_probs=210.0
Q ss_pred hhhhhhccccHHHHHHHHhhhHHHHHHHHHHHHhhcC-CcccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhCCCCCccc
Q psy13811 40 ERERMYVQFPGELFLKMLKCLIVPLLVSSIVSAIGSL-DLSLSKRVGFRSIAYYCATTSIAVVEGIILVCTIRPGVGHAS 118 (297)
Q Consensus 40 ~~~~~~i~~~G~lfi~lLkm~VvPLVf~sii~gI~~l-~~~~~grig~~tl~~~l~tt~iA~~iGl~~~~~~~pG~~~~~ 118 (297)
++...|++++||+|+|+|||+|+|+||+|++.||+++ +.++.||++.|++.||+.+|.+|+++|+.++++++||.+.+.
T Consensus 28 ~~~~~~l~~iG~iFl~lLkm~VvPLVf~Sii~gI~~l~~~~~lg~i~~~~~~~f~~tt~iA~~lgl~~~~l~~pg~g~~~ 107 (428)
T PRK01663 28 PELGAQMKPLGDGFIKLIKMIIAPIIFCTVVTGIAGMGDMKKVGRVGGKALLYFEIVSTIALIIGLIVVNVVQPGAGMNI 107 (428)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCc
Confidence 3467889999999999999999999999999999999 779999999999999999999999999999999999987642
Q ss_pred cc-ccc--cCCcccccccccchHHhHhhhcchhhHHHHHHhhhhhhhhhhccccccCCchHHHHHHHHHHHHHHHhhccc
Q psy13811 119 MK-GAQ--AGNYSKTSLTTDTLMDLSRVLFYILCVTELYFILCVTELWQMRGEWVVGSNVLGLVFFSIAMGIAIARIGKA 195 (297)
Q Consensus 119 ~~-~~~--~~~~~~~~~~~~~~~~~i~~liP~n~f~~l~~~~n~~~~~~~~~~~~~~~n~L~iivFAi~~G~al~~~~~~ 195 (297)
.. ..+ +.....+..+.+++.|++.+++|+|+|+++ + ++|+||+++||+++|+|+.+.+||
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~iP~Nif~al----------------a-~gnvL~vIvFai~~GiAl~~~~e~ 170 (428)
T PRK01663 108 DPATLDAKAVAQYAAQAHEQGTVDFLMDIIPTTVVGAF----------------A-SGDILQVLLFAVLFGFALARLGEK 170 (428)
T ss_pred ccccccchhhcccccccccccHHHHHHHHCCCchHHHH----------------h-cCChHHHHHHHHHHHHHHHhcccc
Confidence 21 001 000011111234789999999999999996 4 689999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy13811 196 GKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVRE 275 (297)
Q Consensus 196 ~~~l~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~~~~~l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~~~ 275 (297)
++++++++|+++++++|+++|+|+++|+|||+++|+.++++ |.+.+ .++++|++++|.++++|.++++|++++ ++|+
T Consensus 171 ~~~l~~~~~~~~~vi~kii~~im~laPiGVfaliA~~v~~~-g~~~l-~~l~~~l~~~~~~~~i~~~vv~~~i~~-~~~~ 247 (428)
T PRK01663 171 GKPVFDFIESLSHVLFGIVNMIMKLAPIGAFGAMAFTIGKY-GVGSL-VQLGQLIGCFYITCILFVFVVLGAIAR-LTGF 247 (428)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCC
Confidence 99999999999999999999999999999999999999874 77655 599999999999999999999998875 6899
Q ss_pred CHHHHHHHhHHHHHhhhcccCC
Q psy13811 276 WPFRFTANMGQAIATAFGTASR 297 (297)
Q Consensus 276 nP~~f~~~~~~all~Af~T~SS 297 (297)
||++|+|+++||+++||+|+||
T Consensus 248 ~p~~f~k~~~~~~~~AfsT~SS 269 (428)
T PRK01663 248 SIFKFIRYIKEELLIVLGTSSS 269 (428)
T ss_pred CHHHHHHHHHHHHHHhhecccH
Confidence 9999999999999999999998
No 3
>PRK11283 gltP glutamate/aspartate:proton symporter; Provisional
Probab=100.00 E-value=6.3e-47 Score=368.60 Aligned_cols=235 Identities=21% Similarity=0.426 Sum_probs=205.9
Q ss_pred hhhccccHHHHHHHHhhhHHHHHHHHHHHHhhcC-CcccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhCCCCCccccc-
Q psy13811 43 RMYVQFPGELFLKMLKCLIVPLLVSSIVSAIGSL-DLSLSKRVGFRSIAYYCATTSIAVVEGIILVCTIRPGVGHASMK- 120 (297)
Q Consensus 43 ~~~i~~~G~lfi~lLkm~VvPLVf~sii~gI~~l-~~~~~grig~~tl~~~l~tt~iA~~iGl~~~~~~~pG~~~~~~~- 120 (297)
..|++++||+|+|++||+|+|+||+|++.|++++ |.+++||++.|++.||+.||++|+.+|+.++++++||.+.+.+.
T Consensus 38 ~~~l~~~G~iFl~lLkm~VvPLVf~Sii~gI~~l~~~~~lg~ig~~~~~~f~~tt~ia~~igl~~~~i~~PG~g~~~~~~ 117 (437)
T PRK11283 38 SNLLSPAGDIFIHLIKMIVVPIVISTLIVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITLANVFQPGAGIDMSQL 117 (437)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccc
Confidence 4689999999999999999999999999999999 78999999999999999999999999999999999998754211
Q ss_pred ---cccc-CCccc-ccccccchHHhHhhhcchhhHHHHHHhhhhhhhhhhccccccCCchHHHHHHHHHHHHHHHhhccc
Q psy13811 121 ---GAQA-GNYSK-TSLTTDTLMDLSRVLFYILCVTELYFILCVTELWQMRGEWVVGSNVLGLVFFSIAMGIAIARIGKA 195 (297)
Q Consensus 121 ---~~~~-~~~~~-~~~~~~~~~~~i~~liP~n~f~~l~~~~n~~~~~~~~~~~~~~~n~L~iivFAi~~G~al~~~~~~ 195 (297)
+..+ +...+ ...+.+++.|++.+++|+|+|+++ + ++|+||+++||+++|+|+..++|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~iP~N~~~al----------------a-~gn~L~vIiFai~~GiAl~~~~~~ 180 (437)
T PRK11283 118 ATVDISKYQSTTEEVQSHSHGLMGTILSLIPTNIFASM----------------A-KGEMLPIIFFSVLFGLGLSSLPAT 180 (437)
T ss_pred hhhhhhhhcccccccccccccHHHHHHHHcCCChHHHH----------------h-cCChHHHHHHHHHHHHHHHccCch
Confidence 0000 00011 112235688999999999999986 4 689999999999999999988654
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy13811 196 -GKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVR 274 (297)
Q Consensus 196 -~~~l~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~~~~~l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~~ 274 (297)
++++.+++|+++++++|+++|+|+++|+|||+++|+.+++ +|.+.+. ++++|++++|+++++|.++++|++++ ++|
T Consensus 181 ~~~~l~~~~~~~~~~~~kii~~im~~aPiGVfaliA~~~~~-~g~~~l~-~l~~~l~~~~~~~~l~~~vv~~~i~~-~~~ 257 (437)
T PRK11283 181 HREPLVTVFRSVSETMFKVTHMVMRYAPVGVFALIAVTVAN-FGFASLW-PLAKLVLLVYFAILFFALVVLGIVAR-LCG 257 (437)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HhC
Confidence 6899999999999999999999999999999999999987 4777665 89999999999999999999998875 579
Q ss_pred CCHHHHHHHhHHHHHhhhcccCC
Q psy13811 275 EWPFRFTANMGQAIATAFGTASR 297 (297)
Q Consensus 275 ~nP~~f~~~~~~all~Af~T~SS 297 (297)
+||++|+|+++||+++||+|+||
T Consensus 258 ~np~~~~k~~~~~~~~AfsT~SS 280 (437)
T PRK11283 258 LSIWILIRILKDELILAYSTASS 280 (437)
T ss_pred CCHHHHHHHHHHHHHHHheccch
Confidence 99999999999999999999998
No 4
>PRK13027 C4-dicarboxylate transporter DctA; Reviewed
Probab=100.00 E-value=8.6e-47 Score=366.13 Aligned_cols=238 Identities=24% Similarity=0.367 Sum_probs=209.2
Q ss_pred hhhhhhccccHHHHHHHHhhhHHHHHHHHHHHHhhcC-CcccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhCCCCCccc
Q psy13811 40 ERERMYVQFPGELFLKMLKCLIVPLLVSSIVSAIGSL-DLSLSKRVGFRSIAYYCATTSIAVVEGIILVCTIRPGVGHAS 118 (297)
Q Consensus 40 ~~~~~~i~~~G~lfi~lLkm~VvPLVf~sii~gI~~l-~~~~~grig~~tl~~~l~tt~iA~~iGl~~~~~~~pG~~~~~ 118 (297)
++...|++++||+|+|+|||+|+|+||+|++.||+++ |.+++||++.|++.||+.+|.+|+.+|+.++++++||.+.+.
T Consensus 27 ~~~~~~l~~iG~iFl~lLkm~VvPlVf~sii~gI~~l~~~~~~grig~~~~~~f~~tt~ia~~igl~~~~~~~pg~g~~~ 106 (421)
T PRK13027 27 PHFAESLKPLGDGFIKLIKMLIGPIVFCVVVSGIAGAGDLKKVGRVGLKAVIYFEVMTTIALVIGLVLAYLTGPGVGMNI 106 (421)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCccchhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccc
Confidence 3456789999999999999999999999999999999 779999999999999999999999999999999999987642
Q ss_pred cc-ccccC--Ccc-cccccccchHHhHhhhcchhhHHHHHHhhhhhhhhhhccccccCCchHHHHHHHHHHHHHHHhhcc
Q psy13811 119 MK-GAQAG--NYS-KTSLTTDTLMDLSRVLFYILCVTELYFILCVTELWQMRGEWVVGSNVLGLVFFSIAMGIAIARIGK 194 (297)
Q Consensus 119 ~~-~~~~~--~~~-~~~~~~~~~~~~i~~liP~n~f~~l~~~~n~~~~~~~~~~~~~~~n~L~iivFAi~~G~al~~~~~ 194 (297)
.. +.+.+ ... .+.++.+++.|++.+++|+|+|+++ + ++|+||+++||+++|+|+.+.+|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iP~Nif~al----------------a-~gn~L~vIvFAi~~GiAl~~~~e 169 (421)
T PRK13027 107 DLRSLDAASLAGYAKNAQSLKGTAGFLLKLIPTTAVDAF----------------A-KGDILQVLLFSVLFGSALSLLGE 169 (421)
T ss_pred cccccchhhhhhhcccccccccHHHHHHHHCccchHHHh----------------h-cCChHHHHHHHHHHHHHHHhcCc
Confidence 21 11100 000 0112224688999999999999986 4 67999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy13811 195 AGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVR 274 (297)
Q Consensus 195 ~~~~l~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~~~~~l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~~ 274 (297)
|++++.+++|+++++++|+++|+|+++|+|||+++|+.+++ .|.+.+ .++++|++++++++++|.++++|++.+ .+|
T Consensus 170 ~~~~l~~~~~~~~~~~~kii~~im~laPigVfaliA~~~~~-~g~~~l-~~l~~~l~~~~~~~~i~~~vv~~~i~~-~~~ 246 (421)
T PRK13027 170 RAKRVNRLIDELSHVLFRIMGFIIKLAPLGVLGAIAFTTGK-YGVGSL-KQLGMLVAVFYLTCFVFVVVVLGAVMR-LAG 246 (421)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC
Confidence 99999999999999999999999999999999999999987 467654 599999999999999999999998875 689
Q ss_pred CCHHHHHHHhHHHHHhhhcccCC
Q psy13811 275 EWPFRFTANMGQAIATAFGTASR 297 (297)
Q Consensus 275 ~nP~~f~~~~~~all~Af~T~SS 297 (297)
+||++|+|+++|++++||+|+||
T Consensus 247 ~~p~~~~k~~~~~~~~Af~T~SS 269 (421)
T PRK13027 247 FSVFKLIRYLREELLIVLGTASS 269 (421)
T ss_pred CCHHHHHHHHHHHHHHHhhhcch
Confidence 99999999999999999999998
No 5
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=100.00 E-value=8.9e-47 Score=362.43 Aligned_cols=231 Identities=30% Similarity=0.576 Sum_probs=209.4
Q ss_pred hhhccccHHHHHHHHhhhHHHHHHHHHHHHhhcC-CcccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhCCCCCccccc-
Q psy13811 43 RMYVQFPGELFLKMLKCLIVPLLVSSIVSAIGSL-DLSLSKRVGFRSIAYYCATTSIAVVEGIILVCTIRPGVGHASMK- 120 (297)
Q Consensus 43 ~~~i~~~G~lfi~lLkm~VvPLVf~sii~gI~~l-~~~~~grig~~tl~~~l~tt~iA~~iGl~~~~~~~pG~~~~~~~- 120 (297)
..+++++||+|+|++||+++|+||++++.||+++ |.|+.||+|+|++.||+.+|.+|..+|+.+++.+|||.+.+.+.
T Consensus 32 ~~~l~plg~~Fi~Likmii~PlVf~tlv~gIa~~~~~k~~gr~g~ktl~yf~~tt~~A~~iGl~~~~~~~Pg~g~~~~~~ 111 (415)
T COG1301 32 AIYLKPLGDIFIKLIKMIIIPLVFFTLVLGIASLGDLKKLGRLGGKTLIYFLVTTTLAIAIGLVVANVLQPGAGINIDPA 111 (415)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCcc
Confidence 4889999999999999999999999999999999 78999999999999999999999999999999999998775432
Q ss_pred ccccCCcccccccccchHHhHhhhcchhhHHHHHHhhhhhhhhhhccccccCCchHHHHHHHHHHHHHHHhhcccchH-H
Q psy13811 121 GAQAGNYSKTSLTTDTLMDLSRVLFYILCVTELYFILCVTELWQMRGEWVVGSNVLGLVFFSIAMGIAIARIGKAGKP-L 199 (297)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~i~~liP~n~f~~l~~~~n~~~~~~~~~~~~~~~n~L~iivFAi~~G~al~~~~~~~~~-l 199 (297)
+.+... +. ..++.+++.+++|+|+|+++ + +||+||+++||+++|+++..++|++++ +
T Consensus 112 ~~~~~~--~~---~~~~~~~l~~iiP~ni~~a~----------------a-~g~vLqil~fail~G~al~~~~~~~~~~v 169 (415)
T COG1301 112 TLDTGA--ES---EVSILDFLLDIIPTNIFGAL----------------A-EGNVLQILFFAILFGLALAALGEKGKPPV 169 (415)
T ss_pred ccCCcc--cc---cchHHHHHHhhcCCChHhHh----------------c-CCChHHHHHHHHHHHHHHHHcccccchHH
Confidence 111111 10 22389999999999999986 5 479999999999999999999998876 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Q psy13811 200 LSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFR 279 (297)
Q Consensus 200 ~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~~~~~l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~~~nP~~ 279 (297)
.+++|+++++++|+++|||+++|+|+|+++|+.+++ +|.+.+. ++++|++++|+++++|.+++||++.+.++|.||++
T Consensus 170 ~~~~~~~~~~~~~v~~~vm~laPigvf~~~a~~v~~-~G~~~L~-~l~~~v~~~~~~~~l~~~vvl~~~~~~~~g~s~~~ 247 (415)
T COG1301 170 ENLFESLSEAMFKVTNFVMRLAPIGVFGLMAFTVAK-YGFGSLL-SLGKLVLAVYLGLLLFVFVVLGLLLKLLSGFSPFK 247 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 899999999999999999999999999999999887 5787776 99999999999999999999999998888999999
Q ss_pred HHHHhHHHHHhhhcccCC
Q psy13811 280 FTANMGQAIATAFGTASR 297 (297)
Q Consensus 280 f~~~~~~all~Af~T~SS 297 (297)
|+|+++|++++||+|+||
T Consensus 248 ~~r~~~~~~~~Af~T~SS 265 (415)
T COG1301 248 FLRYISEALLLAFSTSSS 265 (415)
T ss_pred HHHHHHHHHHHHHhcchh
Confidence 999999999999999998
No 6
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=100.00 E-value=2.3e-46 Score=360.89 Aligned_cols=239 Identities=37% Similarity=0.658 Sum_probs=205.5
Q ss_pred ccchhhhhhccccHHHHHHHHhhhHHHHHHHHHHHHhhcC-CcccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q psy13811 37 AWSERERMYVQFPGELFLKMLKCLIVPLLVSSIVSAIGSL-DLSLSKRVGFRSIAYYCATTSIAVVEGIILVCTIRPGVG 115 (297)
Q Consensus 37 ~~~~~~~~~i~~~G~lfi~lLkm~VvPLVf~sii~gI~~l-~~~~~grig~~tl~~~l~tt~iA~~iGl~~~~~~~pG~~ 115 (297)
++.++...|++++||+|+|++||+++|+||+|++.|++++ +.++.||+++|++.||..+|.+|+.+|+.++.+++||..
T Consensus 19 ~~~~~~~~~l~~~G~lfi~ll~~~v~PLVf~sii~gi~~l~~~~~~g~i~~~~i~~~~~~t~~A~~ig~~~~~~~~pg~~ 98 (390)
T PF00375_consen 19 DFSPEAAQWLSFPGDLFIRLLKMLVLPLVFSSIISGIASLGDAKKLGRIGGRTILYFLLTTLLAAAIGLLVALLFQPGAS 98 (390)
T ss_dssp TTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHCHSHT-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SS-T
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccccHHHHHHHHHHHHHHHHHHHHHHHheeeCCCcc
Confidence 5678899999999999999999999999999999999999 689999999999999999999999999999999999921
Q ss_pred cccccccccCCcccccccccchHHhHhhhcchhhHHHHHHhhhhhhhhhhccccccCCchHHHHHHHHHHHHHHHhhccc
Q psy13811 116 HASMKGAQAGNYSKTSLTTDTLMDLSRVLFYILCVTELYFILCVTELWQMRGEWVVGSNVLGLVFFSIAMGIAIARIGKA 195 (297)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~liP~n~f~~l~~~~n~~~~~~~~~~~~~~~n~L~iivFAi~~G~al~~~~~~ 195 (297)
.... +.....++..+.+++.|++++++|+|+++++ + ++|+|++++||+++|+++.+++||
T Consensus 99 ~~~~---~~~~~~~~~~~~~~~~~~~~~~iP~Ni~~a~----------------~-~~~~L~ivvfai~~G~al~~~~~~ 158 (390)
T PF00375_consen 99 GVRA---SSAVSSISSSESPSLLDFLRNLIPSNIFEAF----------------A-NGNILGIVVFAILFGVALGRLGEK 158 (390)
T ss_dssp TS-S---STTSS--------SSHHHHHCTS-SSHHHHH----------------H-SS-HHHHHHHHHHHHHHHHHHHTS
T ss_pred cccc---ccccccccccccccchhhhccccCCcHHHhh----------------h-hcccchhhhHHHHHHHHHHHHhhh
Confidence 1100 1111122334567899999999999999996 4 689999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy13811 196 GKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVRE 275 (297)
Q Consensus 196 ~~~l~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~~~~~l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~~~ 275 (297)
+|++++++|++|++++|+++|+++++|+|+++++++.+++ +|.+.+. ++++|++++++++++|.++++|++++.++|+
T Consensus 159 ~~~~~~~~~~~~~~~~~ii~~i~~~~Pigv~~l~a~~~~~-~~~~~l~-~l~~~v~~~~~~~~i~~~v~~pl~~~~~~~~ 236 (390)
T PF00375_consen 159 GKPLIDFFESLNEVIMKIINWIMKLAPIGVFGLIANSIAT-QGLSILG-ALGKFVLTVYVALLIHLFVVLPLILFVLTRK 236 (390)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHS-SCCGHHH-HHHHHHHHHHHHHHHHHHHTHHHHHH-TTT-
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cChhhHH-HHHHHHHHHHHHHHHHHHHHhhHHHhhhcCC
Confidence 9999999999999999999999999999999999999988 6777666 9999999999999999999999999989999
Q ss_pred CHHHHHHHhHHHHHhhhcccCC
Q psy13811 276 WPFRFTANMGQAIATAFGTASR 297 (297)
Q Consensus 276 nP~~f~~~~~~all~Af~T~SS 297 (297)
||++|+|+++||+++||+|+||
T Consensus 237 np~~~~~~~~~~~l~Af~T~SS 258 (390)
T PF00375_consen 237 NPFKFLKAMLPALLTAFSTSSS 258 (390)
T ss_dssp -HHHHHHHTHHHHHHHHHHT-T
T ss_pred CHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999998
No 7
>PRK13628 serine/threonine transporter SstT; Provisional
Probab=100.00 E-value=3e-42 Score=332.66 Aligned_cols=229 Identities=19% Similarity=0.272 Sum_probs=193.6
Q ss_pred hhhhhhccccHHHHHHHHhhhHHHHHHHHHHHHhhcCCc-ccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhCCCCCccc
Q psy13811 40 ERERMYVQFPGELFLKMLKCLIVPLLVSSIVSAIGSLDL-SLSKRVGFRSIAYYCATTSIAVVEGIILVCTIRPGVGHAS 118 (297)
Q Consensus 40 ~~~~~~i~~~G~lfi~lLkm~VvPLVf~sii~gI~~l~~-~~~grig~~tl~~~l~tt~iA~~iGl~~~~~~~pG~~~~~ 118 (297)
++...|++++||+|+|++||+|+|+||+|++.|++++++ ++.+ +++++.||+.||++|+.+|+.++++++||.+.+.
T Consensus 35 ~~~~~~l~~iG~iFl~llkmiV~PLVf~sIv~gI~~l~~~~~~~--~~~~i~~~~~tt~ia~~~gl~~~~l~~~g~~~~~ 112 (402)
T PRK13628 35 PPAAEAVGLLGTLFVGALKAVAPILVFVLVMASIANHKKGQKTN--IRPILVLYLLGTFLAALVAVVASFLFPSTLVLVA 112 (402)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccc--HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCccc
Confidence 456789999999999999999999999999999999943 3333 5568999999999999999999999999865421
Q ss_pred ccccccCCcccccccccchHHhHhhhcchhhHHHHHHhhhhhhhhhhccccccCCchHHHHHHHHHHHHHHHhhcccchH
Q psy13811 119 MKGAQAGNYSKTSLTTDTLMDLSRVLFYILCVTELYFILCVTELWQMRGEWVVGSNVLGLVFFSIAMGIAIARIGKAGKP 198 (297)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~i~~liP~n~f~~l~~~~n~~~~~~~~~~~~~~~n~L~iivFAi~~G~al~~~~~~~~~ 198 (297)
. ++ . .++..+..+..+.+.+.+|+|+|+++ + ++|+||+++||+++|+|+.+.+|+
T Consensus 113 ~---~~-~-~~~~~~~~~~~~~~~~~i~~N~~~al----------------~-~gniL~vIvFai~~GiAl~~~~~~--- 167 (402)
T PRK13628 113 S---AA-D-ISPPQGIVEVLKTLLLSLVDNPINAL----------------L-NANYIGILAWAIGLGLALRHASDT--- 167 (402)
T ss_pred c---cc-c-ccCCcchHHHHHHHHHHCcCCHHHHh----------------H-cCCHHHHHHHHHHHHHHHHHhhHH---
Confidence 1 01 1 11111112334455777889999985 4 579999999999999999887644
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH
Q psy13811 199 LLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPF 278 (297)
Q Consensus 199 l~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~~~~~l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~~~nP~ 278 (297)
..+++|+++++++|+++|+|+++|+|||+++|+.++++ |.+.+. ++++|++++|+++++|.++++|++++..+|+||+
T Consensus 168 ~~~~~~~~~~~~~kii~~Im~laPiGVfaliA~~v~~~-g~~~l~-~l~~~v~~~~~~~~i~~~vv~~~i~~~~~~~~p~ 245 (402)
T PRK13628 168 TKNVVNDLSEAVSQIVKWVIRFAPIGIFGLVASTLAET-GFSALA-GYAQLLAVLVGCMLFVALVVNPLIVFWKIRRNPY 245 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 66999999999999999999999999999999999884 787665 9999999999999999999999999888999999
Q ss_pred HH-HHHhHHHHHhhhcccCC
Q psy13811 279 RF-TANMGQAIATAFGTASR 297 (297)
Q Consensus 279 ~f-~~~~~~all~Af~T~SS 297 (297)
+| +|+++|++++||+|+||
T Consensus 246 ~~~~k~~~~~~~~AfsT~SS 265 (402)
T PRK13628 246 PLVFTCLRESGVTAFFTRSS 265 (402)
T ss_pred HHHHHHHHHHHHHHheehhH
Confidence 98 89999999999999998
No 8
>COG1823 Predicted Na+/dicarboxylate symporter [General function prediction only]
Probab=100.00 E-value=2.2e-36 Score=280.32 Aligned_cols=244 Identities=19% Similarity=0.346 Sum_probs=206.0
Q ss_pred CCccchhhhhhccccHHHHHHHHhhhHHHHHHHHHHHHhhcC-CcccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy13811 35 PDAWSERERMYVQFPGELFLKMLKCLIVPLLVSSIVSAIGSL-DLSLSKRVGFRSIAYYCATTSIAVVEGIILVCTIRPG 113 (297)
Q Consensus 35 ~~~~~~~~~~~i~~~G~lfi~lLkm~VvPLVf~sii~gI~~l-~~~~~grig~~tl~~~l~tt~iA~~iGl~~~~~~~pG 113 (297)
+.++..+..+|++.+|+.|+|+|||+|+||||.|+++++.++ +.++.||+..-++++.++||.+|+.+|+..++.|.--
T Consensus 55 ~~~~~~~t~~W~nivgnGYV~LLqMivmPLVfiSIlsAi~kl~~~~~lgKis~l~i~~ll~ttaIAA~iGi~~~~~fgLt 134 (458)
T COG1823 55 DSPVLKETIDWFNIVGNGYVRLLQMIVMPLVFISILSAIAKLDNASKLGKISLLTIGTLLFTTAIAALIGILVALLFGLT 134 (458)
T ss_pred CchHHHhHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 457888999999999999999999999999999999999999 6799999999999999999999999999999988663
Q ss_pred CCccccccc-c--c-C--CcccccccccchHHhHhhhcchhhHHHHHHhhhhhhhhhhccccccCCchHHHHHHHHHHHH
Q psy13811 114 VGHASMKGA-Q--A-G--NYSKTSLTTDTLMDLSRVLFYILCVTELYFILCVTELWQMRGEWVVGSNVLGLVFFSIAMGI 187 (297)
Q Consensus 114 ~~~~~~~~~-~--~-~--~~~~~~~~~~~~~~~i~~liP~n~f~~l~~~~n~~~~~~~~~~~~~~~n~L~iivFAi~~G~ 187 (297)
. ....++. | . + +...+.-...++.+.+.+++|+|+|.++ ..++..+++++++||.+.|+
T Consensus 135 A-~~l~~G~~e~a~~~~i~~~~~~~~~~tipq~ilslIP~NpF~dl--------------TGa~~tSiIaVVIFa~~lGi 199 (458)
T COG1823 135 A-EGLVQGDAETARISEIQTYVGKVADLTIPQLILSLIPKNPFADL--------------TGANPTSIIAVVIFAAFLGI 199 (458)
T ss_pred H-HHHhhCcHHHHHHHHHHHHhhhhhhcchHHHHHHhcCCCchhHh--------------hcCCccceeehhHHHHHHHH
Confidence 2 1111110 0 0 0 0001111234678889999999999886 11345789999999999999
Q ss_pred HHHhhc----ccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13811 188 AIARIG----KAGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQLGLYFITVLLGLLIHGFI 263 (297)
Q Consensus 188 al~~~~----~~~~~l~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~~~~~l~~~l~~~vl~v~~~~~i~~~v 263 (297)
|..+.. |++|.+.+++|.+|+++|++++.+++++|+||+++|+...++ .+++++. .+|.|+.+.|.+..+ +|+
T Consensus 200 Aalk~~k~~~~~ge~~~~~I~t~~~ivM~lV~~VirLTPYgV~AlMtkv~at-s~~~~I~-~Lg~FivAsY~Ai~~-MFv 276 (458)
T COG1823 200 AALKLSKKDPEKGERFKAAIDTLQSIVMKLVRLVIRLTPYGVLALMTKVVAT-SNLEDII-KLGSFIVASYIAIFI-MFV 276 (458)
T ss_pred HHHHhhhhchHhHhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccHHHHH-HHHhHHHHHHHHHHH-HHH
Confidence 998874 456899999999999999999999999999999999987766 5799998 999999999998887 588
Q ss_pred HHHHHHHHhhcCCHHHHHHHhHHHHHhhhcccCC
Q psy13811 264 LLPAMYTFFVREWPFRFTANMGQAIATAFGTASR 297 (297)
Q Consensus 264 vlpli~~~~~~~nP~~f~~~~~~all~Af~T~SS 297 (297)
+..+++ .+.|.||.+|+|+.+|.+.+||.++||
T Consensus 277 vH~iLL-~~~g~NPi~Y~Kkv~PvL~FAFtSRSS 309 (458)
T COG1823 277 VHGILL-ALNGVNPIKYFKKVWPVLTFAFTSRSS 309 (458)
T ss_pred HHHHHH-HHcCCCHHHHHHHHhHHHhhheecccc
Confidence 888776 468999999999999999999999998
No 9
>PRK14695 serine/threonine transporter SstT; Provisional
Probab=99.96 E-value=9.8e-29 Score=231.43 Aligned_cols=176 Identities=20% Similarity=0.319 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCc-ccccccccCCcccccccccchHHhHhhhcchhhHHHHHHhhhhhhhhhhccccccC
Q psy13811 94 ATTSIAVVEGIILVCTIRPGVGH-ASMKGAQAGNYSKTSLTTDTLMDLSRVLFYILCVTELYFILCVTELWQMRGEWVVG 172 (297)
Q Consensus 94 ~tt~iA~~iGl~~~~~~~pG~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~liP~n~f~~l~~~~n~~~~~~~~~~~~~~ 172 (297)
.|+++|+...+..+.+++|-.+. ..+.+.. ++ .+..+..+.+.+.+|+|+|+++ + +
T Consensus 2 ~t~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~iv~~~~~N~~~al----------------a-~ 58 (319)
T PRK14695 2 IGTFAAALVAVLASFIVPIEITLNSANTEIA-----PP-DGIGQVLSNLLLKLVDSPVNAL----------------L-T 58 (319)
T ss_pred HHHHHHHHHHHHHHHhCCcchhccccccccC-----CC-CcHHHHHHHHHHHccCCHHHHh----------------H-c
Confidence 68899999999999999998876 2111111 11 2234566666777799999986 4 6
Q ss_pred CchHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy13811 173 SNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQLGLYFIT 252 (297)
Q Consensus 173 ~n~L~iivFAi~~G~al~~~~~~~~~l~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~~~~~l~~~l~~~vl~ 252 (297)
+|+||+++||+++|+|+.. ++++..+++|+++++++|+++|+|+++|+|+|+++|+.++++ |.+.+ .++++|+++
T Consensus 59 gn~L~iIvFAil~Gial~~---~~~~~~~~~~~l~~v~~kiv~~Vm~~aPiGVfaliA~~v~~~-G~~~l-~~l~~~v~~ 133 (319)
T PRK14695 59 ANYIGILSWAVIFGIAMRE---ASKNSKELLKTIADVTSKIVEWIINLAPFGILGLVFKTISDK-GVGSL-ANYGILLVL 133 (319)
T ss_pred CCcHHHHHHHHHHHHHHHH---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHH-HHHHHHHHH
Confidence 8999999999999999974 357888999999999999999999999999999999999884 78766 499999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHH-HHhHHHHHhhhcccCC
Q psy13811 253 VLLGLLIHGFILLPAMYTFFVREWPFRFT-ANMGQAIATAFGTASR 297 (297)
Q Consensus 253 v~~~~~i~~~vvlpli~~~~~~~nP~~f~-~~~~~all~Af~T~SS 297 (297)
+|+++++|.++++|++++..+|+||++|+ |+++|++++||+|+||
T Consensus 134 ~~~~~~i~~~vv~~~~~~~~~~~~p~~f~~~~~~~~~~~AfsT~SS 179 (319)
T PRK14695 134 LVTTMLFVAPVVNPLIAFFFMRRNPYPLVWNCLRVSGVTAFFTRSS 179 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 99999999999999998888999999996 5588999999999998
No 10
>COG3633 SstT Na+/serine symporter [Amino acid transport and metabolism]
Probab=99.86 E-value=2.1e-21 Score=176.20 Aligned_cols=256 Identities=18% Similarity=0.227 Sum_probs=185.7
Q ss_pred hhhcccchhhHHHhhhhhhcCCC---ccchhhhhhccccHHHHHHHHhhhHHHHHHHHHHHHhhcCCcccchhhhhHHHH
Q psy13811 14 TVMDGMDEMRVVERRTVLDSMPD---AWSERERMYVQFPGELFLKMLKCLIVPLLVSSIVSAIGSLDLSLSKRVGFRSIA 90 (297)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~G~lfi~lLkm~VvPLVf~sii~gI~~l~~~~~grig~~tl~ 90 (297)
.+.+-.-.-+++.|+-++..... -.+|+...-.+.+|++|.+.||.+.+-|||.-+..+|++-+.++-.++ +-.+.
T Consensus 6 ~l~~~~~~gsLv~qI~iGlvlGi~~a~~s~~~a~~vgllG~lFv~aLkAvAPvLVf~LV~asIan~k~gqkt~i-r~Iiv 84 (407)
T COG3633 6 KLFRLLARGSLVKQILIGLVLGILLAIISPPAAEAVGLLGTLFVGALKAVAPVLVFILVMASIANHKKGQKTNI-RPIIV 84 (407)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc-ceeeh
Confidence 34444555667777766554332 357778888899999999999999999999999999999854433444 45567
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCCcccccccccchHHhHhhhcchhhHHHHHHhhhhhhhhhhccccc
Q psy13811 91 YYCATTSIAVVEGIILVCTIRPGVGHASMKGAQAGNYSKTSLTTDTLMDLSRVLFYILCVTELYFILCVTELWQMRGEWV 170 (297)
Q Consensus 91 ~~l~tt~iA~~iGl~~~~~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~liP~n~f~~l~~~~n~~~~~~~~~~~~ 170 (297)
.|+.-|+.|+....+.+..|+.-.... . ++ .+.+......|.+.+++=+ .. .||++++ .
T Consensus 85 LYl~GTF~Aal~AVia~f~FP~~lvL~--~--~~----~~~spP~gi~eVl~~Ll~~-~V------dNPinAl------~ 143 (407)
T COG3633 85 LYLLGTFSAALVAVIASFAFPSTLVLA--S--SA----GDISPPSGIVEVLKSLLMS-LV------DNPINAL------L 143 (407)
T ss_pred HHHHHHHHHHHHHHHHhhcCceeEEEe--c--cC----CCCCCCccHHHHHHHHHHH-Hh------cCHHHHH------h
Confidence 788888989888888777765433221 1 11 1111223444544443321 11 1565553 3
Q ss_pred cCCchHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccChHHHHHHHHHHH
Q psy13811 171 VGSNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQLGLYF 250 (297)
Q Consensus 171 ~~~n~L~iivFAi~~G~al~~~~~~~~~l~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~~~~~l~~~l~~~v 250 (297)
+.|.++++.+|+-+|+|+.+-.|. -.+.++.++|...++++||++++|+|+|++.+.++++. |.+.+. .+.+++
T Consensus 144 -~aNyiGiLaWaiglG~Alrh~s~~---tk~~~~d~~e~vs~iV~~iI~fAP~GIfgLVasT~a~t-G~~aL~-gYa~LL 217 (407)
T COG3633 144 -NANYIGILAWAIGLGLALRHASDT---TKNLVNDLSEAVSKIVKVVIRFAPIGIFGLVASTLAET-GFGALW-GYAQLL 217 (407)
T ss_pred -cCCchhhhHHHHHHhHHHHhccHh---HHHHHHHHHHHHHHHHheeeeccCchhhHHHHHHHHhh-hHHHHH-HHHHHH
Confidence 579999999999999999866544 45567888999999999999999999999999999884 676655 677765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHH-HHHhHHHHHhhhcccCC
Q psy13811 251 ITVLLGLLIHGFILLPAMYTFFVREWPFRF-TANMGQAIATAFGTASR 297 (297)
Q Consensus 251 l~v~~~~~i~~~vvlpli~~~~~~~nP~~f-~~~~~~all~Af~T~SS 297 (297)
.+..-.++...+++-|++.++-.|+||++. +...++.-.+||.|+||
T Consensus 218 ~vLvg~Mlfva~VVNpliv~~kiRrNPyPLV~~ClReSg~tAFFTRSS 265 (407)
T COG3633 218 AVLVGCMLFVALVVNPLIVYWKIRRNPYPLVLTCLRESGVTAFFTRSS 265 (407)
T ss_pred HHHHHHHHHHHHHhccceEEEEecCCCcchhHHHhhhcCeEEEEeccc
Confidence 544444555688999999988889999986 66667899999999998
No 11
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=65.53 E-value=36 Score=31.74 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy13811 242 TVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREW 276 (297)
Q Consensus 242 l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~~~n 276 (297)
.++++|......++...+..+.++|.++.++.+.+
T Consensus 272 ~~~~~G~~~~~gi~~~~l~~l~llPall~~~~~~~ 306 (333)
T PF03176_consen 272 PLRQFGLLAAIGILIALLLSLTLLPALLSLLGRWR 306 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 34578877666666666667788899998777665
No 12
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=53.06 E-value=1.6e+02 Score=28.48 Aligned_cols=55 Identities=13% Similarity=0.309 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Q psy13811 179 VFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMK 237 (297)
Q Consensus 179 ivFAi~~G~al~~~~~~~~~l~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~ 237 (297)
++.+++.|++++.. +..+...+.++-.-+.+.+.++.++ .|+ ||+.+...+++.+
T Consensus 5 ilia~vlGi~~G~~-~~~~~~~~~l~~~G~lfi~ll~~~v--~PL-Vf~sii~gi~~l~ 59 (390)
T PF00375_consen 5 ILIAIVLGILLGLI-DFSPEAAQWLSFPGDLFIRLLKMLV--LPL-VFSSIISGIASLG 59 (390)
T ss_dssp HHHHHHHHHHHHHH-TTHHHHHHHTHHHHHHHHHHHHHHH--HHH-HHHHHHHHCHSHT
T ss_pred HHHHHHHHHHHHhH-HhhHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHhhccCCc
Confidence 56677777777664 4446677888888899999988754 477 4444444565544
No 13
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=44.74 E-value=2.8e+02 Score=26.33 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy13811 60 LIVPLLVSSIVSAIGSLDLSLSKRVGFRSIAYYCATTSIAVVEGIILVCTIRPG 113 (297)
Q Consensus 60 ~VvPLVf~sii~gI~~l~~~~~grig~~tl~~~l~tt~iA~~iGl~~~~~~~pG 113 (297)
=..|++-.-+...=++++.|+.++..+|.......=..+++.+|++++.++.+.
T Consensus 46 g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~ 99 (312)
T PRK12460 46 GAAPLLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAE 99 (312)
T ss_pred ChHHHHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcc
Confidence 445777666666667788899999999999999999999999999999998874
No 14
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=41.62 E-value=3.5e+02 Score=30.56 Aligned_cols=93 Identities=17% Similarity=0.239 Sum_probs=47.4
Q ss_pred CchHHHHHHHHHHHHHHHhh---------cccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccChHHHH
Q psy13811 173 SNVLGLVFFSIAMGIAIARI---------GKAGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTV 243 (297)
Q Consensus 173 ~n~L~iivFAi~~G~al~~~---------~~~~~~l~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~~~~~l~ 243 (297)
-|.++++-..+..|+++-.. ++++....+..+++.++-.-++..+.-..=+|+.-+. +++.+ ++
T Consensus 1101 LN~vSlv~Li~avGisV~f~~hI~~~f~~~~~~~~~~ra~~al~~vg~~v~~g~tlT~~~g~~~L~---f~~s~----if 1173 (1204)
T TIGR00917 1101 LNAVSVVNLVMAKGISIEFCSHINAQFSTSKHFSRNHRAKEALGGMGSSVFSGITLTKLVGVVVLG---FSKSE----IF 1173 (1204)
T ss_pred HhHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCcc----HH
Confidence 45666666666666654322 1223445666777777766666553222122222222 12222 22
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13811 244 GQL-GLYFITVLLGLLIHGFILLPAMYTFF 272 (297)
Q Consensus 244 ~~l-~~~vl~v~~~~~i~~~vvlpli~~~~ 272 (297)
+-. -+..+++.+-.++|+++++|+++.++
T Consensus 1174 ~vfff~m~l~iv~~g~~HGLvfLPVlLS~~ 1203 (1204)
T TIGR00917 1174 QVYYFRMYLAIVLLGALHGLVFLPVLLSYI 1203 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 22223333445679999999987654
No 15
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=40.27 E-value=2.8e+02 Score=28.79 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13811 242 TVGQLGLYFITVLLGLLIHGFILLPAMY 269 (297)
Q Consensus 242 l~~~l~~~vl~v~~~~~i~~~vvlpli~ 269 (297)
..+.+|..+....+..+++.++++|.++
T Consensus 690 ~~~~~g~~~~~~i~~~~~~~l~llPall 717 (719)
T TIGR00921 690 IMRNFGLVQGIGVLSSLTAALVVFPALL 717 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457787777777777788889999775
No 16
>TIGR02848 spore_III_AC stage III sporulation protein AC. Members of this protein family are designated SpoIIIAC, part of the spoIIIA operon of sporulation genes whose mutant phenotype is linked to sporulation stage III. Members of this family are encoded by the genome of a species if and only if that species is capable of endospore formation, as in Bacillus subtilis. The molecular function of this small, probable integral membrane protein is unknown.
Probab=39.81 E-value=1.4e+02 Score=21.52 Aligned_cols=53 Identities=19% Similarity=0.402 Sum_probs=36.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13811 214 TTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFF 272 (297)
Q Consensus 214 v~~Ii~~aPigV~~lia~~i~~~~~~~~l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~ 272 (297)
++.|-+.+-+|+.-.+.+++.+..|-++.. .+ +...|.++..+++.|.+.-++
T Consensus 3 i~lIFkIAgVGIlvavl~~vLk~sGkee~A-~~-----~tLaG~iiVL~~Vi~~i~~LF 55 (64)
T TIGR02848 3 ISLIFKIAGVGILVAVIHTILKQSGKEEQA-QM-----VTLAGIVVVLFMVITLINDLF 55 (64)
T ss_pred hhhhhhHhhHHHHHHHHHHHHHHcCcHHHH-HH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999989998877766655 33 333445555566777766544
No 17
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=39.02 E-value=79 Score=26.10 Aligned_cols=44 Identities=11% Similarity=0.309 Sum_probs=34.9
Q ss_pred HHHhhhHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHH
Q psy13811 55 KMLKCLIVPLLVSSIVSAIGSLDLSLSKRVGFRSIAYYCATTSIA 99 (297)
Q Consensus 55 ~lLkm~VvPLVf~sii~gI~~l~~~~~grig~~tl~~~l~tt~iA 99 (297)
..+-.+++|++..++..|..+ +.++=+|++++|...++.+++-+
T Consensus 82 i~LA~~~~pL~l~tl~~a~~~-~~~~Hrki~r~t~piWlyvsvTG 125 (133)
T PF04238_consen 82 IILAIVALPLVLYTLYRALRG-RFTRHRKIGRWTFPIWLYVSVTG 125 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999887 44566899999999998875443
No 18
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=37.91 E-value=4.6e+02 Score=27.91 Aligned_cols=92 Identities=16% Similarity=0.219 Sum_probs=53.6
Q ss_pred CchHHHHHHHHHHHHHHHhh--------c-ccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccChHHHH
Q psy13811 173 SNVLGLVFFSIAMGIAIARI--------G-KAGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTV 243 (297)
Q Consensus 173 ~n~L~iivFAi~~G~al~~~--------~-~~~~~l~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~~~~~l~ 243 (297)
-|.+..+...+..|++.-.. . ++..+-.+.-+++.++-.-+++..+.- =+|+..+..... .++
T Consensus 697 l~~vs~v~l~~~iG~sVd~~~Hi~~~f~~~~~~~~~~r~~~al~~~g~pv~~~~~st-~l~~~~l~f~~~-------~~~ 768 (798)
T PF02460_consen 697 LDPVSMVNLIMSIGFSVDFSAHIAYAFVHSQGSTRDERVAEALSSMGWPVLQGALST-FLGVLPLAFSPS-------YIF 768 (798)
T ss_pred cchHHHHHHHHHhchhhHHHHHHHHHheecccchHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHhhH-------HHH
Confidence 45566666666677664322 1 122444555666666666666554433 244444443221 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13811 244 GQLGLYFITVLLGLLIHGFILLPAMYTFF 272 (297)
Q Consensus 244 ~~l~~~vl~v~~~~~i~~~vvlpli~~~~ 272 (297)
+...+.+..+.+..++|+++++|.++.++
T Consensus 769 ~~ff~~~~l~~~~~~~hglv~lPv~ls~~ 797 (798)
T PF02460_consen 769 RVFFKTVFLVIIFGLLHGLVFLPVLLSLF 797 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666666667778889999999997643
No 19
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=37.71 E-value=1.7e+02 Score=28.77 Aligned_cols=56 Identities=21% Similarity=0.120 Sum_probs=40.3
Q ss_pred HHHhhhHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q psy13811 55 KMLKCLIVPLLVSSIVSAIGSLDLSLSKRVGFRSIAYYCATTSIAVVEGIILVCTIRPGV 114 (297)
Q Consensus 55 ~lLkm~VvPLVf~sii~gI~~l~~~~~grig~~tl~~~l~tt~iA~~iGl~~~~~~~pG~ 114 (297)
+.|.+-|. +-++.+|-.+++|.+=|-..|.+.-.+..++.|+..|++++.++.-+.
T Consensus 111 nFL~fyIA----~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G~~~ 166 (438)
T COG3493 111 NFLDFYIA----ALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFGLSF 166 (438)
T ss_pred ChHHHHHH----HHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 45555553 334556666777777777778888888888889999999998876554
No 20
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=36.96 E-value=1.8e+02 Score=28.13 Aligned_cols=114 Identities=19% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhCCCCCccc---ccccccCCcccccccccchHHh
Q psy13811 64 LLVSSIVSAIGSLDLSLSKRVGFRSIAYYCATTSIAVVEGIILVCTIRPGVGHAS---MKGAQAGNYSKTSLTTDTLMDL 140 (297)
Q Consensus 64 LVf~sii~gI~~l~~~~~grig~~tl~~~l~tt~iA~~iGl~~~~~~~pG~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 140 (297)
.|-+-++.+|-++|+|-+-|=..|-+.-.+..++.|...|.+++.++.-+..... ....-.++..+...+......-
T Consensus 30 yIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~~~~i~lPIm~GG~GaGavPLS~~Y~~ 109 (347)
T TIGR00783 30 YIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFDHSLMYIVMPIMAGGVGAGIVPLSIIYSA 109 (347)
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHhhheeeehhcCCCcccchhhHHHHHHH
Q ss_pred HhhhcchhhHHHHHHhhhhhhhhhhccccccCCchHHHH----HHHHHHHHHHHhhcccchHH
Q psy13811 141 SRVLFYILCVTELYFILCVTELWQMRGEWVVGSNVLGLV----FFSIAMGIAIARIGKAGKPL 199 (297)
Q Consensus 141 i~~liP~n~f~~l~~~~n~~~~~~~~~~~~~~~n~L~ii----vFAi~~G~al~~~~~~~~~l 199 (297)
..+.=++..+.+ +++.+ ++||+++-.+.++++|...+
T Consensus 110 ~~g~~~~~~~s~----------------------~ip~~~igni~AIi~agll~~lG~~~p~l 150 (347)
T TIGR00783 110 ITGRSSEEIFSQ----------------------LIPAVIIGNIFAIICAGLLSRIGKKRPKL 150 (347)
T ss_pred HhCCCHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhccCCCc
No 21
>TIGR02829 spore_III_AE stage III sporulation protein AE. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AE.
Probab=35.53 E-value=1.3e+02 Score=29.49 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=39.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcC-C-cccchhh--hhHHHHHHHHHHHHHHHHHHHH
Q psy13811 51 ELFLKMLKCLIVPLLVSSIVSAIGSL-D-LSLSKRV--GFRSIAYYCATTSIAVVEGIIL 106 (297)
Q Consensus 51 ~lfi~lLkm~VvPLVf~sii~gI~~l-~-~~~~gri--g~~tl~~~l~tt~iA~~iGl~~ 106 (297)
+..-.+.+-+++|++..+.+.++.+- + ..+..|+ ..|....+..-+..++.+|+..
T Consensus 195 ~~~~~li~~vllPli~i~~vl~ivn~ls~e~~lskLa~llk~~~~w~lg~~ltif~Gi~~ 254 (381)
T TIGR02829 195 NTTGKVITNIVIPLILLSFVLSIVNNISDEYKIDKLSKFLKQISIGSQGVFLTIFLGVIT 254 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55557788899999999999988877 4 3455555 2345555566667777777753
No 22
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=34.51 E-value=2.8e+02 Score=27.43 Aligned_cols=119 Identities=13% Similarity=0.083 Sum_probs=67.6
Q ss_pred hhhcchhhHHHHHHhhhhhhhhhhccccccCCchHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13811 142 RVLFYILCVTELYFILCVTELWQMRGEWVVGSNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVIWIS 221 (297)
Q Consensus 142 ~~liP~n~f~~l~~~~n~~~~~~~~~~~~~~~n~L~iivFAi~~G~al~~~~~~~~~l~~~~~~l~~~~~~iv~~Ii~~a 221 (297)
.+++|++..++. + .+.+++|.|-..+-+++.|-.++..+ |.+ ++-..++.
T Consensus 75 ~~~ip~~~~~~v-------~------~fm~~~~Fl~ffIa~LI~GSILgm~R---klL--------------ika~~r~~ 124 (414)
T PF03390_consen 75 FGLIPESVVEAV-------T------NFMKGSNFLYFFIAALIVGSILGMNR---KLL--------------IKAFARFI 124 (414)
T ss_pred cCCCCHHHHHHH-------H------HHhccCChHHHHHHHHHHhhhhhcCH---HHH--------------HHHHHHHH
Confidence 477788666543 1 13456799999999999998887653 222 33445566
Q ss_pred HHHHHHHHHHHHHhccChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHhHHHHHhh
Q psy13811 222 PFGIFFLVAEKIIDMKSLSHT-----VGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFRFTANMGQAIATA 291 (297)
Q Consensus 222 PigV~~lia~~i~~~~~~~~l-----~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~~~nP~~f~~~~~~all~A 291 (297)
|.-+.+.++..... ...+.+ ...+.++++-+..+-.=-..+=++-+|.-..+.++-+++..+.|+...+
T Consensus 125 p~il~g~~~a~~~g-~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lg 198 (414)
T PF03390_consen 125 PPILGGVIGAFLLG-GLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLG 198 (414)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 66666655543322 111111 1233333333332211111223344555566899999999999988765
No 23
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=30.69 E-value=5.4e+02 Score=25.45 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccChHHHH
Q psy13811 174 NVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTV 243 (297)
Q Consensus 174 n~L~iivFAi~~G~al~~~~~~~~~l~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~~~~~l~ 243 (297)
++..=++.++++|+.++..-++... ...++-+.+++.++++.++ .|+-.++++.. +++.++.+...
T Consensus 7 ~l~~qv~iglilGi~~Gl~~~~~~~-~~~l~plg~~Fi~Likmii--~PlVf~tlv~g-Ia~~~~~k~~g 72 (415)
T COG1301 7 SLYLQVLIGLILGILVGLFLPELGA-AIYLKPLGDIFIKLIKMII--IPLVFFTLVLG-IASLGDLKKLG 72 (415)
T ss_pred cHHHHHHHHHHHHHHHHhhccccch-hhhhhhHHHHHHHHHHHHH--HHHHHHHHHHH-HHhhhchHHHH
Confidence 3445567778888877755322221 4555677888889888664 59988887765 55555554443
No 24
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=30.43 E-value=4.1e+02 Score=29.44 Aligned_cols=94 Identities=15% Similarity=0.250 Sum_probs=59.3
Q ss_pred CchHHHHHHHHHHHHHHHhh----------cccchHHHH-----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Q psy13811 173 SNVLGLVFFSIAMGIAIARI----------GKAGKPLLS-----VFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMK 237 (297)
Q Consensus 173 ~n~L~iivFAi~~G~al~~~----------~~~~~~l~~-----~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~ 237 (297)
-|+.+++=+-+++|+..... .+++.+..+ .-+-+.-++|+-+..++-++|++.. . +
T Consensus 921 l~~~sl~Gli~l~GivV~naIvlvd~i~~~~~~G~~~~~Ai~~A~~~RlRPIlmTtltti~gllPlal~--------~-g 991 (1037)
T PRK10555 921 NDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKGHDLFEATLHASRQRLRPILMTSLAFIFGVLPMATS--------T-G 991 (1037)
T ss_pred ccHHHHHHHHHHHHHHHcCeEEeHHHHHHHHHcCCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh--------c-C
Confidence 46777777777888766421 122322222 2344566788888888999998742 1 1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy13811 238 SLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVRE 275 (297)
Q Consensus 238 ~~~~l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~~~ 275 (297)
.-+.+.++++.-+..-++...+..+++.|.+|.++.|+
T Consensus 992 ~g~~~~~pla~~ii~GL~~St~ltL~vvP~ly~~~~~~ 1029 (1037)
T PRK10555 992 AGSGSQHAVGTGVMGGMISATILAIFFVPLFFVLVRRR 1029 (1037)
T ss_pred CChHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12356667776655555555556788999999877654
No 25
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=29.84 E-value=5.5e+02 Score=25.31 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccC
Q psy13811 179 VFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMKS 238 (297)
Q Consensus 179 ivFAi~~G~al~~~~~~~~~l~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~~ 238 (297)
++.++++|+.++..-+ +..+.++-+-+++.++++.++ .|+-.++++.+ +++.++
T Consensus 13 iligl~lGi~~G~~~~---~~~~~l~~iG~iFl~lLkm~V--vPLVf~Sii~g-I~~l~~ 66 (428)
T PRK01663 13 VLVAIIIGILLGHFYP---ELGAQMKPLGDGFIKLIKMII--APIIFCTVVTG-IAGMGD 66 (428)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHH-HHhCcc
Confidence 5666777776664421 134556777889999998865 68888888765 554433
No 26
>PRK09579 multidrug efflux protein; Reviewed
Probab=28.02 E-value=4.3e+02 Score=29.22 Aligned_cols=93 Identities=20% Similarity=0.339 Sum_probs=53.9
Q ss_pred CCchHHHHHHHHHHHHHHHh-------h---cccc-hHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHhc
Q psy13811 172 GSNVLGLVFFSIAMGIAIAR-------I---GKAG-KPLLSVFESLSEVVMTI----TTWVIWISPFGIFFLVAEKIIDM 236 (297)
Q Consensus 172 ~~n~L~iivFAi~~G~al~~-------~---~~~~-~~l~~~~~~l~~~~~~i----v~~Ii~~aPigV~~lia~~i~~~ 236 (297)
+-|.+.+.-+.+.+|+..-. . .+++ .+.....++..+...-+ +..+.-++|++...
T Consensus 382 ~ln~~sl~gli~~iGi~VddaIvv~e~i~~~~~~G~~~~~A~~~~~~~~~~pil~stlTti~~f~Pl~f~~--------- 452 (1017)
T PRK09579 382 SINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLT--------- 452 (1017)
T ss_pred CchHHHHHHHHHhhheeecCcEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------
Confidence 35777777777777765321 1 1222 23333344444443333 24445566665421
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13811 237 KSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFV 273 (297)
Q Consensus 237 ~~~~~l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~ 273 (297)
+..+..+++++..+....+...+..+.+.|.++..+-
T Consensus 453 g~~g~~~~~l~~~v~~~l~~S~l~al~l~P~l~~~~~ 489 (1017)
T PRK09579 453 GLTGALFKEFALTLAGAVIISGIVALTLSPMMCALLL 489 (1017)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2223567788887777777777788999999886653
No 27
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=27.64 E-value=6.1e+02 Score=25.11 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=66.4
Q ss_pred CchHHHHHHHHHHHHHHHhhcccchHHHH---------HH--------HHHHHHHHHHHHHHH---HHhHHHHHHHHHHH
Q psy13811 173 SNVLGLVFFSIAMGIAIARIGKAGKPLLS---------VF--------ESLSEVVMTITTWVI---WISPFGIFFLVAEK 232 (297)
Q Consensus 173 ~n~L~iivFAi~~G~al~~~~~~~~~l~~---------~~--------~~l~~~~~~iv~~Ii---~~aPigV~~lia~~ 232 (297)
.|+++-+.+..++|..+...++|-..+.+ +| +-+.+-..+.++-.| .+.=+-+.++++++
T Consensus 28 ~~m~g~~a~~~v~G~~l~~IG~riPi~k~yiGGg~il~~f~ps~Lv~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GS 107 (414)
T PF03390_consen 28 TDMIGGFAVMMVLGFLLGEIGDRIPILKDYIGGGAILCIFVPSALVYFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGS 107 (414)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhChhhhccCChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhh
Confidence 46777777777777777766655322222 21 112222222232233 46777888999999
Q ss_pred HHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHh
Q psy13811 233 IIDMKSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFRFTANM 284 (297)
Q Consensus 233 i~~~~~~~~l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~~~nP~~f~~~~ 284 (297)
+..+ +-+-+.++..+|+-....+.+.- + ....+.-.+.+.+|.+-+-++
T Consensus 108 ILgm-~RklLika~~r~~p~il~g~~~a-~-~~g~lvG~l~G~~~~~~i~~i 156 (414)
T PF03390_consen 108 ILGM-NRKLLIKAFARFIPPILGGVIGA-F-LLGGLVGMLFGYSFKDAIFYI 156 (414)
T ss_pred hhhc-CHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHhCCCHHHHHHHH
Confidence 9876 45678889999988888776653 2 333444456788998754433
No 28
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=27.33 E-value=3.8e+02 Score=29.70 Aligned_cols=93 Identities=16% Similarity=0.241 Sum_probs=56.9
Q ss_pred CchHHHHHHHHHHHHHHHhh----------cccchHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Q psy13811 173 SNVLGLVFFSIAMGIAIARI----------GKAGKPLLSV-----FESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMK 237 (297)
Q Consensus 173 ~n~L~iivFAi~~G~al~~~----------~~~~~~l~~~-----~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~ 237 (297)
-|+.+++-+-+++|+..... .+++.+..+. -+.+.-++|+-+..+.-++|++... +
T Consensus 922 l~~~sl~G~i~l~GivVnnaIvlvd~~~~~~~~G~~~~~Ai~~a~~~RlRPIlmTtltti~gllPla~~~---------g 992 (1044)
T TIGR00915 922 NDVYFQVGLLTTIGLSAKNAILIVEFAKELMAQGKSIVEAALEAARMRLRPILMTSLAFILGVVPLAIST---------G 992 (1044)
T ss_pred ccHHHHHHHHHHHHHHHcceEeeHHHHHHHHHcCCCHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhc---------C
Confidence 46777777778888776521 1233333322 2334556777777788888887421 1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy13811 238 SLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVR 274 (297)
Q Consensus 238 ~~~~l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~~ 274 (297)
.-+.+.++++.-++.-++...+..+++.|.+|.++.|
T Consensus 993 ~g~~~~~plai~vigGL~~st~ltL~vvP~ly~~~~~ 1029 (1044)
T TIGR00915 993 AGSGSQHAIGTGVFGGMVTATVLAIFFVPLFYVVVRR 1029 (1044)
T ss_pred CChHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1124566777755555555555678899999876543
No 29
>PF09546 Spore_III_AE: Stage III sporulation protein AE (spore_III_AE); InterPro: IPR014194 This entry represents the stage III sporulation protein AE, which is encoded in a spore formation operon spoIIIAABCDEFGH under the control of sigma G []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=25.74 E-value=5.8e+02 Score=24.24 Aligned_cols=102 Identities=13% Similarity=0.157 Sum_probs=50.0
Q ss_pred cccchHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy13811 193 GKAGKPLLSVFESLSEVVMT----ITTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQLGLYFITV-LLGLLIHGFILLPA 267 (297)
Q Consensus 193 ~~~~~~l~~~~~~l~~~~~~----iv~~Ii~~aPigV~~lia~~i~~~~~~~~l~~~l~~~vl~v-~~~~~i~~~vvlpl 267 (297)
||......++++.+.+.+++ -.+.+.++.=+++++-..+.+...-+-+++- ..+.|+.-. ...+++..|...--
T Consensus 16 G~~~~s~~~i~~~l~~~~~~ev~~~~~ll~~ll~lall~all~n~~~aF~~~~vs-~~~f~v~yl~l~~l~~~sF~~~~~ 94 (328)
T PF09546_consen 16 GEEKLSFKQIFSGLLEYLFYEVKANLKLLGQLLLLALLCALLSNFQSAFSNGQVS-EIAFYVCYLVLITLLLQSFTIAID 94 (328)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCcCcHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433444555554444443 3355667777777777666654321111222 333332221 11223333322221
Q ss_pred HHHHhhcCCHHHHHHHhHHHHHhhhcccC
Q psy13811 268 MYTFFVREWPFRFTANMGQAIATAFGTAS 296 (297)
Q Consensus 268 i~~~~~~~nP~~f~~~~~~all~Af~T~S 296 (297)
+.. =+=.+-..|++.+.|.+.++.+.++
T Consensus 95 ~~~-~~i~~~~~Fm~~l~Pv~~~~la~~G 122 (328)
T PF09546_consen 95 IAR-ETIESMVDFMKALLPVYFTLLAASG 122 (328)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 1124667899999999988876554
No 30
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=25.22 E-value=7.3e+02 Score=27.42 Aligned_cols=93 Identities=22% Similarity=0.328 Sum_probs=53.1
Q ss_pred CchHHHHHHHHHHHHHHHhh----------cccc-hHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHhcc
Q psy13811 173 SNVLGLVFFSIAMGIAIARI----------GKAG-KPLLSVFESLSEVVMTIT----TWVIWISPFGIFFLVAEKIIDMK 237 (297)
Q Consensus 173 ~n~L~iivFAi~~G~al~~~----------~~~~-~~l~~~~~~l~~~~~~iv----~~Ii~~aPigV~~lia~~i~~~~ 237 (297)
-|.+.+.-+.+.+|+..-.. .+++ ++.....++..++...++ ..+.-++|+... . +
T Consensus 384 ln~~sl~gl~~~iGi~Vd~aIvv~e~i~~~~~~g~~~~~A~~~~~~~~~~~i~~stltti~~f~Pl~~~--------~-g 454 (1025)
T PRK10614 384 LNNLSLMALTIATGFVVDDAIVVLENISRHLEAGMKPLQAALQGVREVGFTVLSMSLSLVAVFLPLLLM--------G-G 454 (1025)
T ss_pred hhHHHHHHHHHHhheeecCcEEEEeHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------C-C
Confidence 46777777777777544211 1222 344445555555444443 333444454322 1 1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy13811 238 SLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVR 274 (297)
Q Consensus 238 ~~~~l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~~ 274 (297)
..+..+++++..+...++...+..+.+.|.++..+.|
T Consensus 455 ~~g~~~~~~~~~~~~~l~~S~~~al~~~P~l~~~~~~ 491 (1025)
T PRK10614 455 LPGRLFREFAVTLSVAIGISLLVSLTLTPMMCAWLLK 491 (1025)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2235667888777777777777788999998866533
No 31
>PF04346 EutH: Ethanolamine utilisation protein, EutH; InterPro: IPR007441 EutH is a bacterial membrane protein whose molecular function is unknown. It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm [].; GO: 0006810 transport, 0016021 integral to membrane
Probab=25.07 E-value=2.2e+02 Score=27.57 Aligned_cols=40 Identities=15% Similarity=0.389 Sum_probs=30.5
Q ss_pred CchHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q psy13811 173 SNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITT 215 (297)
Q Consensus 173 ~n~L~iivFAi~~G~al~~~~~~~~~l~~~~~~l~~~~~~iv~ 215 (297)
-|++++++||+++.+.+.+.+ +.+++.|+.+-+.+..+..
T Consensus 170 ~Nl~Pvii~~~lla~GL~~~p---~~mIkgF~~fGk~i~~~~~ 209 (354)
T PF04346_consen 170 INLIPVIIFAILLAIGLWFFP---EKMIKGFNIFGKFIVILIT 209 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHH
Confidence 489999999999999998776 4577777766665554443
No 32
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=24.62 E-value=5.2e+02 Score=28.65 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=58.4
Q ss_pred CCchHHHHHHHHHHHHHHHhh-----------cccchHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q psy13811 172 GSNVLGLVFFSIAMGIAIARI-----------GKAGKPLLSV-----FESLSEVVMTITTWVIWISPFGIFFLVAEKIID 235 (297)
Q Consensus 172 ~~n~L~iivFAi~~G~al~~~-----------~~~~~~l~~~-----~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~ 235 (297)
.-|+.+++-+-+++|+..... .+++.+..+. -+-+.-++++-+..+.-++|++.. .
T Consensus 915 ~l~~~sliGli~l~GivV~naIvlvd~~~~~~~~~G~~~~eAi~~a~~~R~rPIlmTtltti~gllPlal~------~-- 986 (1040)
T PRK10503 915 ELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQACLLRFRPILMTTLAALLGALPLMLS------T-- 986 (1040)
T ss_pred CccHHHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh------c--
Confidence 356777778888888855411 1223222222 244556777888888888888742 1
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13811 236 MKSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFV 273 (297)
Q Consensus 236 ~~~~~~l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~ 273 (297)
+.-+++.++++.-+...++...+..+++.|.+|.++.
T Consensus 987 -G~g~e~~~pla~~ii~GL~~St~ltL~vvP~ly~~~~ 1023 (1040)
T PRK10503 987 -GVGAELRRPLGICMVGGLIVSQVLTLFTTPVIYLLFD 1023 (1040)
T ss_pred -CCChHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112456678776666666666667889999998763
No 33
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=24.34 E-value=5.2e+02 Score=26.80 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13811 242 TVGQLGLYFITVLLGLLIHGFILLPAMYTFFV 273 (297)
Q Consensus 242 l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~ 273 (297)
..+.+|.+.....+...+..+.++|.++..+.
T Consensus 317 ~~~~~g~~~~~gv~~~~l~~l~~lPall~~~~ 348 (719)
T TIGR00921 317 MVSEFGLGLVAGLITAYLLTLLVLPALLQSID 348 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44578887777777777778889998875543
No 34
>PF05562 WCOR413: Cold acclimation protein WCOR413; InterPro: IPR008892 This family consists of several WCOR413-like plant cold acclimation proteins.
Probab=23.30 E-value=1.7e+02 Score=25.57 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=37.2
Q ss_pred CccchhhhhhccccHHHHH----------HHHhhhHHHHHHHHHHHHhhcCCcccchh
Q psy13811 36 DAWSERERMYVQFPGELFL----------KMLKCLIVPLLVSSIVSAIGSLDLSLSKR 83 (297)
Q Consensus 36 ~~~~~~~~~~i~~~G~lfi----------~lLkm~VvPLVf~sii~gI~~l~~~~~gr 83 (297)
.....+..+|+.....+|+ +++|-+.+|+++.+.-+.+-+.=.++.||
T Consensus 40 ~~~~t~~lqWias~aAi~LlildrtnwkTniltslLVPyi~lslPs~if~~~rGe~G~ 97 (187)
T PF05562_consen 40 LGFGTSFLQWIASIAAIYLLILDRTNWKTNILTSLLVPYIFLSLPSVIFNWFRGEYGK 97 (187)
T ss_pred ccccHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHHhCcHHHHHHHhccccH
Confidence 3467778899988888886 56677999999999999999983234444
No 35
>PRK13628 serine/threonine transporter SstT; Provisional
Probab=23.25 E-value=7.1e+02 Score=24.33 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=46.4
Q ss_pred CchHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccChHH--HHHHHHHHH
Q psy13811 173 SNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSH--TVGQLGLYF 250 (297)
Q Consensus 173 ~n~L~iivFAi~~G~al~~~~~~~~~l~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~~~~~--l~~~l~~~v 250 (297)
.+...-++.+++.|++++..-+ +..+.++-+-+++.++++.++ .|+-..+++. .+++.++.+. ..+.+..|+
T Consensus 14 ~~l~~~ilig~vlGi~~G~~~~---~~~~~l~~iG~iFl~llkmiV--~PLVf~sIv~-gI~~l~~~~~~~~~~~i~~~~ 87 (402)
T PRK13628 14 GSLVKQILIGLVLGILLALLSP---PAAEAVGLLGTLFVGALKAVA--PILVFVLVMA-SIANHKKGQKTNIRPILVLYL 87 (402)
T ss_pred ccHHHHHHHHHHHHHHHHHhhH---HHHHHHhccHHHHHHHHHHHH--HHHHHHHHHH-HHHhCcccccccHHHHHHHHH
Confidence 3555667778888888775421 134556777899999999865 5665555544 4555443321 111344555
Q ss_pred HHHHHHHH
Q psy13811 251 ITVLLGLL 258 (297)
Q Consensus 251 l~v~~~~~ 258 (297)
.+..++.+
T Consensus 88 ~tt~ia~~ 95 (402)
T PRK13628 88 LGTFLAAL 95 (402)
T ss_pred HHHHHHHH
Confidence 55554333
No 36
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=23.15 E-value=9.3e+02 Score=26.19 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCHH
Q psy13811 244 GQLGLYFITVLLG-LLIHGFILLPAMYTFFVREWPF 278 (297)
Q Consensus 244 ~~l~~~vl~v~~~-~~i~~~vvlpli~~~~~~~nP~ 278 (297)
+++|..+..-.+. .++..++.+|.++.++.|.|-|
T Consensus 874 ~~~G~~~a~gvl~~a~~v~~~l~Pall~l~g~~~ww 909 (910)
T TIGR00833 874 AQFGFTVGVGILLDTFIVRSVTVPALTLLLGRWIWW 909 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 4666655444332 3344456789888888777644
No 37
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=21.65 E-value=1.2e+03 Score=26.38 Aligned_cols=94 Identities=14% Similarity=0.257 Sum_probs=49.6
Q ss_pred CchHHHHHHHHHHHHHHHhh--------cccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccChHHHHH
Q psy13811 173 SNVLGLVFFSIAMGIAIARI--------GKAGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTVG 244 (297)
Q Consensus 173 ~n~L~iivFAi~~G~al~~~--------~~~~~~l~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~~~~~l~~ 244 (297)
-|.++++...+.+|+++-.. ...++.-.+.-+++.++-.-+++.++. .=+||..|... . ..-...
T Consensus 1017 LnaVS~vnLimsIGisVefsaHI~~~F~~~~~~r~eR~~~AL~~~G~pVl~g~lT-T~lGvlvLafs---~---s~~~~~ 1089 (1145)
T TIGR00918 1017 LSAIPVVILIASVGIGVEFTVHIALGFLTAIGDRNRRAVLALEHMFAPVLDGALS-TLLGVLMLAGS---E---FDFIVR 1089 (1145)
T ss_pred ccHHHHHHHHHHHhhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHhC---C---cHHHHH
Confidence 45566555544455443321 111222334445555555555544432 23344433221 1 111334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13811 245 QLGLYFITVLLGLLIHGFILLPAMYTFFV 273 (297)
Q Consensus 245 ~l~~~vl~v~~~~~i~~~vvlpli~~~~~ 273 (297)
..++..+.+.+..++|+++++|+++.+++
T Consensus 1090 ~Ffk~~~l~V~~g~lHgLv~LPVLLS~~G 1118 (1145)
T TIGR00918 1090 YFFAVLAVLTCLGVLNGLVLLPVLLSMFG 1118 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56777777777788899999999987665
No 38
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=20.41 E-value=3e+02 Score=26.77 Aligned_cols=38 Identities=13% Similarity=0.429 Sum_probs=28.3
Q ss_pred CchHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Q psy13811 173 SNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTI 213 (297)
Q Consensus 173 ~n~L~iivFAi~~G~al~~~~~~~~~l~~~~~~l~~~~~~i 213 (297)
-|++++++||+++.+.+.+.+ +.+++.|+-+-+.+.-+
T Consensus 171 ~NL~Piii~~illa~GL~~~p---~~mIkgF~~FGk~i~~~ 208 (372)
T PRK15086 171 RNLIPVIIFAILLALGLKFIP---EKMIKGFLIFGKFIVAL 208 (372)
T ss_pred HHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 389999999999999998776 44677666555544433
Done!