Query psy13811
Match_columns 297
No_of_seqs 143 out of 1157
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 21:06:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nwl_A GLTPH, glutamate sympor 100.0 2.2E-47 7.6E-52 369.3 22.3 231 43-297 40-278 (422)
2 4dx5_A Acriflavine resistance 29.4 4.5E+02 0.015 27.3 12.3 94 172-274 922-1031(1057)
3 2v50_A Multidrug resistance pr 27.2 1.4E+02 0.0047 31.3 7.8 94 173-275 922-1030(1052)
4 4dx5_A Acriflavine resistance 25.5 3.8E+02 0.013 27.9 10.9 93 172-274 389-498 (1057)
5 3ne5_A Cation efflux system pr 23.1 5.3E+02 0.018 26.8 11.4 34 241-274 1014-1047(1054)
6 3arc_T Photosystem II reaction 21.6 38 0.0013 20.2 1.2 12 174-185 12-23 (32)
7 2f49_C STE5 peptide, mitogen-a 21.5 28 0.00095 20.1 0.6 13 25-37 3-15 (30)
8 2nwl_A GLTPH, glutamate sympor 15.0 7E+02 0.024 23.1 10.7 60 174-236 11-73 (422)
9 2v50_A Multidrug resistance pr 14.4 4.1E+02 0.014 27.7 8.1 93 173-274 390-498 (1052)
10 3aqp_A Probable secdf protein- 11.5 1.1E+03 0.037 23.5 10.7 99 174-276 324-429 (741)
No 1
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=100.00 E-value=2.2e-47 Score=369.29 Aligned_cols=231 Identities=27% Similarity=0.413 Sum_probs=206.8
Q ss_pred hhhccccHHHHHHHHhhhHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhCCCCCccccccc
Q psy13811 43 RMYVQFPGELFLKMLKCLIVPLLVSSIVSAIGSLDLSLSKRVGFRSIAYYCATTSIAVVEGIILVCTIRPGVGHASMKGA 122 (297)
Q Consensus 43 ~~~i~~~G~lfi~lLkm~VvPLVf~sii~gI~~l~~~~~grig~~tl~~~l~tt~iA~~iGl~~~~~~~pG~~~~~~~~~ 122 (297)
..|++++||+|+|++||+++|+||+|++.|+++++.+++||+++|++.||+.+|++|+.+|+.++++++||.+.+.+..
T Consensus 40 ~~~~~~~G~lFi~llkmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~pg~g~~~~~~- 118 (422)
T 2nwl_A 40 HTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVG- 118 (422)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSCCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccc-
Confidence 4689999999999999999999999999999999878899999999999999999999999999999999987643211
Q ss_pred ccCCcccccccccchHHhHhhhcchhhHHHHHHhhhhhhhhhhccccccCCchHHHHHHHHHHHHHHHhhc--------c
Q psy13811 123 QAGNYSKTSLTTDTLMDLSRVLFYILCVTELYFILCVTELWQMRGEWVVGSNVLGLVFFSIAMGIAIARIG--------K 194 (297)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~i~~liP~n~f~~l~~~~n~~~~~~~~~~~~~~~n~L~iivFAi~~G~al~~~~--------~ 194 (297)
+ +.++..+.+++.|++.+++|+|+++++ + ++|+||+++||+++|+++.+.+ |
T Consensus 119 -~--~~~~~~~~~~~~~~l~~~iP~N~~~a~----------------a-~~~~L~vivfai~~Gial~~~~~~~~~~~~~ 178 (422)
T 2nwl_A 119 -G--QQFQPHQAPPLVHILLDIVPTNPFGAL----------------A-NGQVLPTIFFAIILGIAITYLMNSENEKVRK 178 (422)
T ss_dssp -C--CCC-----CCTHHHHGGGSCSCHHHHH----------------H-TCCHHHHHHHHHHHHHHHHHHHTCSCHHHHH
T ss_pred -c--cccccccCCcHHHHHHHHHhhChHHHH----------------h-hhchHHHHHHHHHHHHHHHHcccccccccch
Confidence 0 111122345789999999999999985 4 6899999999999999999987 6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy13811 195 AGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVR 274 (297)
Q Consensus 195 ~~~~l~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~~~~~l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~~ 274 (297)
|++++.+++|+++++++|+++|||+++|+|||+++|+.+++ .|.+.+. ++++|++++|+++++|.+++||++++ ++|
T Consensus 179 ~~~~~~~~~~~~~~v~~kiv~~im~laPigvf~lia~~~~~-~g~~~l~-~l~~~i~~~~~~~~i~~~vv~~~~~~-~~~ 255 (422)
T 2nwl_A 179 SAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAE-QGVHVVG-ELAKVTAAVYVGLTLQILLVYFVLLK-IYG 255 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTT-TGGGCCT-HHHHHHHHHHHHHHHHHHHTHHHHHH-HTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHC
Confidence 78999999999999999999999999999999999999887 4676554 99999999999999999999999998 889
Q ss_pred CCHHHHHHHhHHHHHhhhcccCC
Q psy13811 275 EWPFRFTANMGQAIATAFGTASR 297 (297)
Q Consensus 275 ~nP~~f~~~~~~all~Af~T~SS 297 (297)
+||++|+|+++|++++||+|+||
T Consensus 256 ~np~~~~k~~~~a~~~Af~T~SS 278 (422)
T 2nwl_A 256 IDPISFIKHAKDAMLTAFVTRSS 278 (422)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHHHHHHHHHHHhccH
Confidence 99999999999999999999998
No 2
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=29.36 E-value=4.5e+02 Score=27.33 Aligned_cols=94 Identities=17% Similarity=0.253 Sum_probs=49.5
Q ss_pred CCchHHHHHHHHHHHHHHHhh-------c----ccchHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q psy13811 172 GSNVLGLVFFSIAMGIAIARI-------G----KAGKPLLSVF-----ESLSEVVMTITTWVIWISPFGIFFLVAEKIID 235 (297)
Q Consensus 172 ~~n~L~iivFAi~~G~al~~~-------~----~~~~~l~~~~-----~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~ 235 (297)
.-|+..++.+.+++|+++-.. + +++....+.+ +.+..++++-+..++-+.|+... .
T Consensus 922 ~l~~~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~ltt~~g~~pl~~~--------~ 993 (1057)
T 4dx5_A 922 TNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVIS--------T 993 (1057)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTC--------C
T ss_pred CccHHHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh--------c
Confidence 357788888888889876422 1 1222222211 22233344444444444443221 1
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy13811 236 MKSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVR 274 (297)
Q Consensus 236 ~~~~~~l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~~ 274 (297)
+.-....++++..+..-++...+..++++|.++.++.+
T Consensus 994 -g~g~~~~~~~g~~~~~Gl~~s~~~tl~~~P~l~~~~~~ 1031 (1057)
T 4dx5_A 994 -GAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRR 1031 (1057)
T ss_dssp -STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCchhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11124555777666655555555678889999877653
No 3
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=27.15 E-value=1.4e+02 Score=31.34 Aligned_cols=94 Identities=16% Similarity=0.229 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHHHhh-------c---ccchHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Q psy13811 173 SNVLGLVFFSIAMGIAIARI-------G---KAGKPLLSVF-----ESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMK 237 (297)
Q Consensus 173 ~n~L~iivFAi~~G~al~~~-------~---~~~~~l~~~~-----~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~ 237 (297)
-|+..++.+.+++|++.-.. + +++....+.+ +.+.-++++-+..++-+.|+.. +...
T Consensus 922 l~~~~~~g~~~l~Gi~vd~~I~lv~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~~tt~~g~~pl~~--------~~~~ 993 (1052)
T 2v50_A 922 NDVFFQVGLLTTIGLSAKNAILIVEFAKELHEQGKGIVEAAIEACRMRLRPIVMTSLAFILGVVPLAI--------STGA 993 (1052)
T ss_dssp BSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHT--------CCST
T ss_pred ccHHHHHHHHHHHHHHHcCeEEEeehHHHHHHcCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh--------cCCC
Confidence 57888889999999876532 1 1222222211 2233344444444444444432 1111
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy13811 238 SLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVRE 275 (297)
Q Consensus 238 ~~~~l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~~~ 275 (297)
|. ...++++..+..-++...+..++++|.++.++.+.
T Consensus 994 g~-~~~~~~~~~~~~Gl~~s~~~~l~~~P~l~~~~~~~ 1030 (1052)
T 2v50_A 994 GS-GSQHAIGTGVIGGMVTATVLAIFWVPLFYVAVSTL 1030 (1052)
T ss_dssp TT-THHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred Ch-hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 21 34557776665555555566788999988666543
No 4
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=25.53 E-value=3.8e+02 Score=27.90 Aligned_cols=93 Identities=16% Similarity=0.254 Sum_probs=51.7
Q ss_pred CCchHHHHHHHHHHHHHHHhh-------c---cc-chHHH-HHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q psy13811 172 GSNVLGLVFFSIAMGIAIARI-------G---KA-GKPLL-SVFES----LSEVVMTITTWVIWISPFGIFFLVAEKIID 235 (297)
Q Consensus 172 ~~n~L~iivFAi~~G~al~~~-------~---~~-~~~l~-~~~~~----l~~~~~~iv~~Ii~~aPigV~~lia~~i~~ 235 (297)
.-|+..++.+.+++|+++-.. . ++ +++.. ...++ ..-+++.-+..++-++|+...
T Consensus 389 ~ln~~sl~gl~~~iGi~vd~aIv~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pi~~t~ltt~~~f~pl~~~--------- 459 (1057)
T 4dx5_A 389 SINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFF--------- 459 (1057)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGGC---------
T ss_pred cHHHHHHHHHHHHeeccccceEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------
Confidence 357888888888888876421 1 11 22211 11222 222333333344444444322
Q ss_pred ccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy13811 236 MKS-LSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVR 274 (297)
Q Consensus 236 ~~~-~~~l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~~ 274 (297)
.| .+..+++++..+....+...+..+.++|.++..+.+
T Consensus 460 -~g~~~~~~~~~a~~~~~gl~~s~~~~l~~~P~l~~~~~~ 498 (1057)
T 4dx5_A 460 -GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLK 498 (1057)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred -cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11 124566788777777777777788999999887754
No 5
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=23.09 E-value=5.3e+02 Score=26.77 Aligned_cols=34 Identities=12% Similarity=0.305 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy13811 241 HTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVR 274 (297)
Q Consensus 241 ~l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~~ 274 (297)
...++++..+...++...+..++++|.++.++.+
T Consensus 1014 ~~~~~l~~~~~~Gl~~s~~~tl~v~P~l~~~~~~ 1047 (1054)
T 3ne5_A 1014 EVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWL 1047 (1054)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHTHHHHHHHTT
T ss_pred HHhccCHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666665555555555678889999877654
No 6
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=21.62 E-value=38 Score=20.18 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=9.5
Q ss_pred chHHHHHHHHHH
Q psy13811 174 NVLGLVFFSIAM 185 (297)
Q Consensus 174 n~L~iivFAi~~ 185 (297)
..|++++||++|
T Consensus 12 ~tlgiiFFAI~F 23 (32)
T 3arc_T 12 CIIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHhhhh
Confidence 468889998876
No 7
>2f49_C STE5 peptide, mitogen-activated protein kinase FUS3; protein-petide complex, transferase; 1.90A {Saccharomyces cerevisiae}
Probab=21.48 E-value=28 Score=20.14 Aligned_cols=13 Identities=38% Similarity=0.659 Sum_probs=10.9
Q ss_pred HHhhhhhhcCCCc
Q psy13811 25 VERRTVLDSMPDA 37 (297)
Q Consensus 25 ~~~~~~~~~~~~~ 37 (297)
|||++.|.+.|.+
T Consensus 3 VERqs~Y~~sP~~ 15 (30)
T 2f49_C 3 VERQTIYSQAPSL 15 (30)
T ss_pred cchhhhhhcCccc
Confidence 7999999997765
No 8
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=15.03 E-value=7e+02 Score=23.12 Aligned_cols=60 Identities=12% Similarity=0.227 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHHHHHHhhc-c--cchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q psy13811 174 NVLGLVFFSIAMGIAIARIG-K--AGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDM 236 (297)
Q Consensus 174 n~L~iivFAi~~G~al~~~~-~--~~~~l~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~ 236 (297)
+...-++.++++|+.++..- + ..+...+.++-+.+++.+.++.++ .|+-.++++. .+++.
T Consensus 11 ~l~~~ili~lvlGi~~G~~~~~~~~~~~~~~~~~~~G~lFi~llkmiv--~PLVf~siv~-gia~l 73 (422)
T 2nwl_A 11 PVLIKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLV--MPIVFASLVV-GAASI 73 (422)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHTHHHHHHHHHHHHHHH--HHHHHHHHHH-HTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHhc
Confidence 44445666777777766442 2 112234567888899999988864 4777666665 45554
No 9
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=14.41 E-value=4.1e+02 Score=27.71 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=51.1
Q ss_pred CchHHHHHHHHHHHHHHHhh-------c----ccchHHH-HHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q psy13811 173 SNVLGLVFFSIAMGIAIARI-------G----KAGKPLL-SVFESLS----EVVMTITTWVIWISPFGIFFLVAEKIIDM 236 (297)
Q Consensus 173 ~n~L~iivFAi~~G~al~~~-------~----~~~~~l~-~~~~~l~----~~~~~iv~~Ii~~aPigV~~lia~~i~~~ 236 (297)
-|++.++.+.+++|++.-.. . ++++... ...++.. -+++.-+..+.-++|+......
T Consensus 390 ln~~s~~gl~~~iGi~vd~aI~~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pil~t~ltt~~~f~pl~~~~~~------- 462 (1052)
T 2v50_A 390 INTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFFGGS------- 462 (1052)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTSSTTHHHHHHHHHTTHHHHTCCHH-------
T ss_pred HHHHHHHHHHHHHHhhccceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------
Confidence 57788888888888765421 1 1121111 1222222 2334444455555555432111
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy13811 237 KSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVR 274 (297)
Q Consensus 237 ~~~~~l~~~l~~~vl~v~~~~~i~~~vvlpli~~~~~~ 274 (297)
.+..+++++..+....+...+..+.++|.++.++.+
T Consensus 463 --~g~~~~~~~~~~~~gl~~s~~~~l~l~P~l~~~~~~ 498 (1052)
T 2v50_A 463 --TGVIYRQFSITIVSAMALSVIVALILTPALCATMLK 498 (1052)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 123566777777766666777788999999876644
No 10
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=11.50 E-value=1.1e+03 Score=23.47 Aligned_cols=99 Identities=9% Similarity=0.081 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHH-------HhhcccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccChHHHHHHH
Q psy13811 174 NVLGLVFFSIAMGIAI-------ARIGKAGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQL 246 (297)
Q Consensus 174 n~L~iivFAi~~G~al-------~~~~~~~~~l~~~~~~l~~~~~~iv~~Ii~~aPigV~~lia~~i~~~~~~~~l~~~l 246 (297)
|+.++..+.+.+|++. -+.+|+.+.=.+.-+++.+.+.+...-|+.-.=--+.++..-.+...+ .++++
T Consensus 324 ~l~~i~glil~iGi~VD~~I~i~eri~e~~~~g~~~~~Ai~~~~~~~~~~Il~s~lTt~i~f~~L~~~~~~----~~~~f 399 (741)
T 3aqp_A 324 TLPGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATG----PVRGF 399 (741)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCT----HHHHH
T ss_pred cHHHHHHHHHHHHHHHhchhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----ccchH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy13811 247 GLYFITVLLGLLIHGFILLPAMYTFFVREW 276 (297)
Q Consensus 247 ~~~vl~v~~~~~i~~~vvlpli~~~~~~~n 276 (297)
+..+....+...+..+.+.|.++.++.++.
T Consensus 400 a~~~~~gi~~s~~~al~~~P~l~~~~~~~~ 429 (741)
T 3aqp_A 400 AVILAIGVVASVFSNLVFSRHLLERLADRG 429 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Done!