RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13811
(297 letters)
>gnl|CDD|215884 pfam00375, SDF, Sodium:dicarboxylate symporter family.
Length = 388
Score = 163 bits (416), Expect = 8e-48
Identities = 87/254 (34%), Positives = 137/254 (53%), Gaps = 23/254 (9%)
Query: 44 MYVQFPGELFLKMLKCLIVPLLVSSIVSAIGSL-DLSLSKRVGFRSIAYYCATTSIAVVE 102
+++ G+LF+ +LK L+VPL+ SIVS I SL D ++G +++ Y+ TT+IA +
Sbjct: 24 GWLKPLGDLFINLLKMLVVPLVFFSIVSGIASLGDGKKLGKLGGKTLLYFLVTTAIAAII 83
Query: 103 GIILVCTIRPGVGHASMKGAQAGNYSKTSLTTDTLMDLSRVLFYILCVTELYFILCVTEL 162
G+++ +PGVG A S +L +L+D F + + F
Sbjct: 84 GLLVALLFQPGVGLLLS---AASAESAKTLEVPSLLD-----FLLNIIPSNIF------- 128
Query: 163 WQMRGEWVVGSNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVIWISP 222
+ NVL ++ F+I GIA+A +G+ GKPLL ESL+EV+M + WV+ ++P
Sbjct: 129 -----AALAEGNVLQVIVFAILFGIALAALGEKGKPLLKFLESLNEVIMKVVNWVMKLAP 183
Query: 223 FGIFFLVAEKIIDMKSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFRFTA 282
G+F L+A + L T+G LG + +TV L L IH F++ P + F PF+F
Sbjct: 184 IGVFALIANTVGTF-GLG-TLGSLGKFVLTVYLALAIHLFVVYPLLLKFLTGLNPFKFLK 241
Query: 283 NMGQAIATAFGTAS 296
+ A+ TAF TAS
Sbjct: 242 KILPALLTAFSTAS 255
>gnl|CDD|224220 COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production
and conversion].
Length = 415
Score = 135 bits (341), Expect = 1e-36
Identities = 76/257 (29%), Positives = 138/257 (53%), Gaps = 29/257 (11%)
Query: 44 MYVQFPGELFLKMLKCLIVPLLVSSIVSAIGSL-DLSLSKRVGFRSIAYYCATTSIAVVE 102
+Y++ G++F+K++K +I+PL+ ++V I SL DL R+G +++ Y+ TT++A+
Sbjct: 33 IYLKPLGDIFIKLIKMIIIPLVFFTLVLGIASLGDLKKLGRLGGKTLIYFLVTTTLAIAI 92
Query: 103 GIILVCTIRPGVG-HASMKGAQAGNYSKTSLTTDTLMDL-SRVLFYILCVTELYFILCVT 160
G+++ ++PG G + G S+ S+ D L+D+ +F L
Sbjct: 93 GLVVANVLQPGAGINIDPATLDTGAESEVSIL-DFLLDIIPTNIFGAL------------ 139
Query: 161 ELWQMRGEWVVGSNVLGLVFFSIAMGIAIARIGKAGKP-LLSVFESLSEVVMTITTWVIW 219
NVL ++FF+I G+A+A +G+ GKP + ++FESLSE + +T +V+
Sbjct: 140 ----------AEGNVLQILFFAILFGLALAALGEKGKPPVENLFESLSEAMFKVTNFVMR 189
Query: 220 ISPFGIFFLVAEKIIDMKSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFR 279
++P G+F L+A + S + LG + V LGLL+ F++L + PF+
Sbjct: 190 LAPIGVFGLMAFTVAKYGFGS--LLSLGKLVLAVYLGLLLFVFVVLGLLLKLLSGFSPFK 247
Query: 280 FTANMGQAIATAFGTAS 296
F + +A+ AF T+S
Sbjct: 248 FLRYISEALLLAFSTSS 264
>gnl|CDD|183850 PRK13027, PRK13027, C4-dicarboxylate transporter DctA; Reviewed.
Length = 421
Score = 76.2 bits (188), Expect = 1e-15
Identities = 57/236 (24%), Positives = 104/236 (44%), Gaps = 40/236 (16%)
Query: 50 GELFLKMLKCLIVPLLVSSIVSAI-GSLDLSLSKRVGFRSIAYYCATTSIAVVEGIILVC 108
G+ F+K++K LI P++ +VS I G+ DL RVG +++ Y+ T+IA+V G++L
Sbjct: 37 GDGFIKLIKMLIGPIVFCVVVSGIAGAGDLKKVGRVGLKAVIYFEVMTTIALVIGLVLAY 96
Query: 109 TIRPGVG--------HASMKGAQAGNYSKTSLTTDTLMDLSRVLFYILCVTELYFILCVT 160
PGVG A+ A N T L+ L
Sbjct: 97 LTGPGVGMNIDLRSLDAASLAGYAKNAQSLKGTAGFLLKLIPTTAV-------------- 142
Query: 161 ELWQMRGEWVVGSNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVIWI 220
+ G ++L ++ FS+ G A++ +G+ K + + + LS V+ I ++I +
Sbjct: 143 ------DAFAKG-DILQVLLFSVLFGSALSLLGERAKRVNRLIDELSHVLFRIMGFIIKL 195
Query: 221 SPFGIFFLVAEKI--IDMKSLSHTVGQLGLY------FITVLLGLL--IHGFILLP 266
+P G+ +A + SL + ++ F+ V+LG + + GF +
Sbjct: 196 APLGVLGAIAFTTGKYGVGSLKQLGMLVAVFYLTCFVFVVVVLGAVMRLAGFSVFK 251
>gnl|CDD|234968 PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.
Length = 428
Score = 73.4 bits (181), Expect = 1e-14
Identities = 64/236 (27%), Positives = 116/236 (49%), Gaps = 48/236 (20%)
Query: 50 GELFLKMLKCLIVPLLVSSIVSAIGSL-DLSLSKRVGFRSIAYYCATTSIAVVEGIILVC 108
G+ F+K++K +I P++ ++V+ I + D+ RVG +++ Y+ ++IA++ G+I+V
Sbjct: 38 GDGFIKLIKMIIAPIIFCTVVTGIAGMGDMKKVGRVGGKALLYFEIVSTIALIIGLIVVN 97
Query: 109 TIRPGVG----HASMKGAQAGNY---SKTSLTTDTLMDLSRVLFYILCVTELYFILCVTE 161
++PG G A++ Y + T D LMD I+ T
Sbjct: 98 VVQPGAGMNIDPATLDAKAVAQYAAQAHEQGTVDFLMD----------------IIPTT- 140
Query: 162 LWQMRGEWVVGS----NVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWV 217
VVG+ ++L ++ F++ G A+AR+G+ GKP+ ESLS V+ I +
Sbjct: 141 --------VVGAFASGDILQVLLFAVLFGFALARLGEKGKPVFDFIESLSHVLFGIVNMI 192
Query: 218 IWISPFGIFFLVAEKIIDMKSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFV 273
+ ++P G F +A T+G+ G+ + V LG LI F + ++ F V
Sbjct: 193 MKLAPIGAFGAMA----------FTIGKYGVGSL-VQLGQLIGCFYITCILFVFVV 237
>gnl|CDD|183075 PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.
Length = 437
Score = 67.1 bits (164), Expect = 1e-12
Identities = 52/183 (28%), Positives = 97/183 (53%), Gaps = 13/183 (7%)
Query: 50 GELFLKMLKCLIVPLLVSSIVSAI-GSLDLSLSKRVGFRSIAYYCATTSIAVVEGIILVC 108
G++F+ ++K ++VP+++S+++ I G D R+G ++I Y+ T++A++ GI L
Sbjct: 45 GDIFIHLIKMIVVPIVISTLIVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITLAN 104
Query: 109 TIRPGVGHASMKGAQAGNYSKTSLTTDTLMDLSRVLFYILCVTELYFILCVTELWQMRGE 168
+PG G M + SK TT+ + S + L T L I +GE
Sbjct: 105 VFQPGAG-IDMSQLATVDISKYQSTTEEVQSHS----HGLMGTILSLIPTNIFASMAKGE 159
Query: 169 WVVGSNVLGLVFFSIAMGIAIARIGKAGK-PLLSVFESLSEVVMTITTWVIWISPFGIFF 227
+L ++FFS+ G+ ++ + + PL++VF S+SE + +T V+ +P G+F
Sbjct: 160 ------MLPIIFFSVLFGLGLSSLPATHREPLVTVFRSVSETMFKVTHMVMRYAPVGVFA 213
Query: 228 LVA 230
L+A
Sbjct: 214 LIA 216
>gnl|CDD|226159 COG3633, SstT, Na+/serine symporter [Amino acid transport and
metabolism].
Length = 407
Score = 50.5 bits (121), Expect = 4e-07
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 174 NVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKI 233
N +G++ ++I +G+A+ K ++ LSE V I VI +P GIF LVA +
Sbjct: 146 NYIGILAWAIGLGLALRHASDTTK---NLVNDLSEAVSKIVKVVIRFAPIGIFGLVASTL 202
Query: 234 IDMKSLSHTVGQLGLY--FITVLLG-LLIHGFILLPAMYTFFVREWPF 278
+ G L Y + VL+G +L ++ P + + +R P+
Sbjct: 203 AE-----TGFGALWGYAQLLAVLVGCMLFVALVVNPLIVYWKIRRNPY 245
>gnl|CDD|173158 PRK14695, PRK14695, serine/threonine transporter SstT; Provisional.
Length = 319
Score = 45.8 bits (108), Expect = 1e-05
Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Query: 170 VVGSNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLV 229
++ +N +G++ +++ GIA+ K K LL +++++V I W+I ++PFGI LV
Sbjct: 56 LLTANYIGILSWAVIFGIAMREASKNSKELL---KTIADVTSKIVEWIINLAPFGILGLV 112
Query: 230 AEKIIDMKSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFRFTAN-MGQAI 288
+ I D S + G+ + ++ +L ++ P + FF+R P+ N + +
Sbjct: 113 FKTISDKGVGS--LANYGILLVLLVTTMLFVAPVVNPLIAFFFMRRNPYPLVWNCLRVSG 170
Query: 289 ATAFGTAS 296
TAF T S
Sbjct: 171 VTAFFTRS 178
>gnl|CDD|224736 COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General
function prediction only].
Length = 458
Score = 45.4 bits (108), Expect = 2e-05
Identities = 54/260 (20%), Positives = 116/260 (44%), Gaps = 40/260 (15%)
Query: 45 YVQFPGELFLKMLKCLIVPLLVSSIVSAIGSLDLSLS-KRVGFRSIAYYCATTSIAVVEG 103
+ G ++++L+ +++PL+ SI+SAI LD + ++ +I TT+IA + G
Sbjct: 65 WFNIVGNGYVRLLQMIVMPLVFISILSAIAKLDNASKLGKISLLTIGTLLFTTAIAALIG 124
Query: 104 IILVCTIRPGVGHA---SMKGAQAGNYSKTSLTTDTLMDLSRVLFYILCVTELYFILCVT 160
I+ V + +G G +S + Y+ V +L +
Sbjct: 125 IL--------VALLFGLTAEGLVQG--------DAETARISEIQTYVGKVADLTIPQLIL 168
Query: 161 ELW-QMRGEWVVGSN---VLGLVFFSIAMGIAIARIGK----AGKPLLSVFESLSEVVMT 212
L + + G+N ++ +V F+ +GIA ++ K G+ + ++L +VM
Sbjct: 169 SLIPKNPFADLTGANPTSIIAVVIFAAFLGIAALKLSKKDPEKGERFKAAIDTLQSIVMK 228
Query: 213 ITTWVIWISPFGIFFLVAEKII--DMKSLSHTVGQLGLYFITVLLGLLIHGFILL----- 265
+ VI ++P+G+ L+ + + +++ + + +I + + ++HG +L
Sbjct: 229 LVRLVIRLTPYGVLALMTKVVATSNLEDIIKLGSFIVASYIAIFIMFVVHGILLALNGVN 288
Query: 266 PAMYTFFVREWP---FRFTA 282
P +F + WP F FT+
Sbjct: 289 PI--KYFKKVWPVLTFAFTS 306
>gnl|CDD|184190 PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.
Length = 402
Score = 45.2 bits (108), Expect = 2e-05
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 174 NVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEKI 233
N +G++ ++I +G+A+ K +V LSE V I WVI +P GIF LVA
Sbjct: 146 NYIGILAWAIGLGLALRHASDTTK---NVVNDLSEAVSQIVKWVIRFAPIGIFGLVAS-- 200
Query: 234 IDMKSLSHT-VGQLGLY--FITVLLG-LLIHGFILLPAMYTFFVREWPF 278
+L+ T L Y + VL+G +L ++ P + + +R P+
Sbjct: 201 ----TLAETGFSALAGYAQLLAVLVGCMLFVALVVNPLIVFWKIRRNPY 245
>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is
a conserved membrane protein. The yfhO gene is
transcribed in Difco sporulation medium and the
transcription is affected by the YvrGHb two-component
system. Some members of this family have been annotated
as glycosyl transferases of the PMT family.
Length = 835
Score = 31.8 bits (73), Expect = 0.52
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 224 GIFFLVAEKIIDMKSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFF 272
++FL D+KS Q + I+ LL I +LLP +
Sbjct: 194 VLYFLYRLIFKDIKSRWK---QFLRFIISSLLSGGISAVVLLPTVLGLL 239
>gnl|CDD|216251 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1.
Programmed cell-death involves a set of Bcl-2 family
proteins, some of which inhibit apoptosis (Bcl-2 and
Bcl-XL) and some of which promote it (Bax and Bak).
Human Bax inhibitor, BI-1, is an evolutionarily
conserved integral membrane protein containing multiple
membrane-spanning segments predominantly localised to
intracellular membranes. It has 6-7 membrane-spanning
domains. The C termini of the mammalian BI-1 proteins
are comprised of basic amino acids resembling some
nuclear targeting sequences, but otherwise the predicted
proteins lack motifs that suggest a function. As plant
BI-1 appears to localise predominantly to the ER, we
hypothesized that plant BI-1 could also regulate cell
death triggered by ER stress. BI-1 appears to exert its
effect through an interaction with calmodulin.
Length = 205
Score = 30.6 bits (70), Expect = 0.69
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 173 SNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVAEK 232
V GL+ + + A+A L + ++ WV + P + V
Sbjct: 5 RKVYGLLALGLLLTAAVA--------YLVLSTPALLQLLFPLFWVGLLLPLALLIFVFLL 56
Query: 233 IIDMKSLSHTVGQLGLYFITVLLGLLIHGFILL 265
+K S + L+ T+L GL + +L+
Sbjct: 57 FSRIKKKSSSAALALLFLFTLLEGLTLGPILLV 89
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 29.5 bits (67), Expect = 2.6
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 175 VLGLVFFSIAMGIAIARIGKAGKPLLSVFESLS----------------------EVVMT 212
++G++ + + + + G + L +
Sbjct: 451 LIGVIHLFLGLLLGFINNVRKGDYKDAFLAQLGWLLILLGILLIVLGGFGLVVGLGPLGL 510
Query: 213 ITTWVIWISPFGIFFLVAEKIIDMKSLSHTVGQLGLYFITVLLG 256
I ++I G+ ++ + ID KSL +G LGLY IT LG
Sbjct: 511 IGKYLIIG---GVVLIILGEGIDGKSLGGALGGLGLYEITGYLG 551
>gnl|CDD|227116 COG4775, COG4775, Outer membrane protein/protective antigen OMA87
[Cell envelope biogenesis, outer membrane].
Length = 766
Score = 29.2 bits (66), Expect = 3.4
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 169 WVVGSNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVIWISPFG 224
V+GS V G +FF + G + + + S SE+ + + W SP G
Sbjct: 685 KVIGSGVRGALFFDAGS---VWNTGTDPSTVRNFYGSGSELRASAGVGLRWASPLG 737
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 28.4 bits (64), Expect = 5.3
Identities = 9/59 (15%), Positives = 17/59 (28%)
Query: 230 AEKIIDMKSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFRFTANMGQAI 288
+K+I + L + LLG +LL + + G +
Sbjct: 334 FDKLIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVV 392
>gnl|CDD|223983 COG1055, ArsB, Na+/H+ antiporter NhaD and related arsenite
permeases [Inorganic ion transport and metabolism].
Length = 424
Score = 28.3 bits (64), Expect = 5.8
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 177 GLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVIWISPFGIFFLVA 230
+ F I + I + + AG V E L+ V+ +++ + + GI +L
Sbjct: 281 STLLFFIGLFIVVGGLENAG-----VTEDLASVLKALSSGGLAAATLGIGWLSG 329
>gnl|CDD|177952 PLN02318, PLN02318, phosphoribulokinase/uridine kinase.
Length = 656
Score = 27.9 bits (62), Expect = 8.2
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 77 DLSLSKRVGFRSIAYYCATTSIAVVEGIILVC-TIRP 112
D S RVG+R++ ++ I ++EGI + +RP
Sbjct: 141 DFKSSSRVGYRTLEV--PSSRIVIIEGIYALSEKLRP 175
>gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed.
Length = 235
Score = 27.4 bits (61), Expect = 8.7
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 116 HASMKGAQAGNYSKTSLTTDTLMDLSRVLFYILCVTELYF 155
H+S + ++ GNY + D RVL LCV E+ F
Sbjct: 35 HSSARASKQGNYERLEFLGD------RVLG--LCVAEMLF 66
>gnl|CDD|221213 pfam11766, Candida_ALS_N, Cell-wall agglutinin N-terminal
ligand-sugar binding. This is likely to be the sugar
or ligand binding domain of the yeast
alpha-agglutinins.
Length = 247
Score = 27.3 bits (61), Expect = 9.8
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 45 YVQFPGELFLK--MLKCLIVPLLVSSIVSAIGSLDLSLSKRVGFRSIAY 91
V GE + L+C + L A G++ L VG +
Sbjct: 44 CVFQSGEYLVTYSELQCTVTSDLSEDT-KASGTITFPLVFNVGGSGSSV 91
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.141 0.430
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,275,263
Number of extensions: 1491705
Number of successful extensions: 2252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2220
Number of HSP's successfully gapped: 135
Length of query: 297
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 201
Effective length of database: 6,679,618
Effective search space: 1342603218
Effective search space used: 1342603218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.5 bits)