RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13811
         (297 letters)



>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 405

 Score = 85.9 bits (212), Expect = 1e-19
 Identities = 59/260 (22%), Positives = 110/260 (42%), Gaps = 16/260 (6%)

Query: 37  AWSERERMYVQFPGELFLKMLKCLIVPLLVSSIVSAIGSLDLSLSKRVGFRSIAYYCATT 96
            ++     YV+  G+LF+++LK L++P++ +S+V    S+  +   RVG + + YY  T+
Sbjct: 23  GYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTS 82

Query: 97  SIAVVEGIILVCTIRPGVGHASMKGAQAGNYSKTSLTTDTLMDLSRVLFYILCVTELYFI 156
           + AV  GII+     PG G     G Q     +       L+D+                
Sbjct: 83  AFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNP----------- 131

Query: 157 LCVTELWQMRGEWVVGSNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTW 216
                L   +    +   ++  +  +  M     ++ K+ + LL     L+E +  I   
Sbjct: 132 --FGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNG 189

Query: 217 VIWISPFGIFFLVAEKIIDMKSLSHTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREW 276
           V+  +P G+F L+A   +  +   H VG+L      V +GL +   ++   +   +  + 
Sbjct: 190 VMQYAPIGVFALIA--YVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGID- 246

Query: 277 PFRFTANMGQAIATAFGTAS 296
           P  F  +   A+ TAF T S
Sbjct: 247 PISFIKHAKDAMLTAFVTRS 266


>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas
           viridis [TaxId: 1079]}
          Length = 323

 Score = 28.2 bits (63), Expect = 1.3
 Identities = 8/39 (20%), Positives = 18/39 (46%)

Query: 258 LIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTAS 296
           L+ G  +  ++ ++++R +       +G  IA  F  A 
Sbjct: 114 LMAGLFMTLSLGSWWIRVYSRARALGLGTHIAWNFAAAI 152


>d1pn0a3 d.16.1.2 (A:241-341) Phenol hydroxylase {Soil-living
          yeast (Trichosporon cutaneum) [TaxId: 5554]}
          Length = 101

 Score = 26.4 bits (58), Expect = 1.7
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 10/58 (17%)

Query: 2  DRTDRYWVVMDRTVMDGMDEMRVVERRTVLDSMPD---AWSERE----RMYVQFPGEL 52
          ++TD  W V+D        ++R    R  + S          RE    R YVQ     
Sbjct: 2  EQTDYIWGVLDAVPASNFPDIR---SRCAIHSAESGSIMIIPRENNLVRFYVQLQARA 56


>d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal
           domain {Aspergillus aculeatus [TaxId: 5053]}
          Length = 250

 Score = 27.5 bits (61), Expect = 1.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 110 IRPGVGHASMKGAQAGNYSKTSLTTDTL 137
           I  G+G A++   Q+G+Y K +  TDTL
Sbjct: 51  IGSGLGSATVTATQSGDYIKVTCVTDTL 78


>d1eysl_ f.26.1.1 (L:) L (light) subunit {Thermochromatium tepidum
           [TaxId: 1050]}
          Length = 280

 Score = 26.6 bits (59), Expect = 3.2
 Identities = 8/38 (21%), Positives = 13/38 (34%)

Query: 258 LIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTA 295
            I       A  ++ +RE        +G  +  AF  A
Sbjct: 95  QIITICAAGAFISWALREVEICRKLGIGFHVPFAFSFA 132


>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum
           [TaxId: 1050]}
          Length = 318

 Score = 26.6 bits (59), Expect = 4.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 258 LIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTA 295
           LI G  L  ++  ++VR +       M Q ++ AF  A
Sbjct: 115 LIAGLFLTLSILLWWVRTYKRAEALGMSQHLSWAFAAA 152


>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter
           sphaeroides [TaxId: 1063]}
          Length = 303

 Score = 26.6 bits (59), Expect = 4.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 258 LIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTA 295
           LI  F +  A+++++ R +       MG+  A AF +A
Sbjct: 116 LIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSA 153


>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate
           phosphoribosyltransferase EF2626 {Enterococcus faecalis
           [TaxId: 1351]}
          Length = 137

 Score = 25.2 bits (55), Expect = 6.9
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 248 LYFITVLLGLLIHGFILLPAMYTFFVREWPFRF 280
           +Y I ++      G   L A++  + RE PF  
Sbjct: 13  MYQINMMQTYWELGRADLHAVFECYFREMPFNH 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.141    0.430 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,086,263
Number of extensions: 47846
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 14
Length of query: 297
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,240,546
Effective search space: 262995752
Effective search space used: 262995752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.7 bits)