BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13812
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V8F|A Chain A, Crystal Structure Of Crosslinked Gltph V216c-M385c Mutant
pdb|3V8F|B Chain B, Crystal Structure Of Crosslinked Gltph V216c-M385c Mutant
pdb|3V8F|C Chain C, Crystal Structure Of Crosslinked Gltph V216c-M385c Mutant
Length = 422
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 42 PFRFTANMGQAIATAFGTASRLFIGYNAMQCLEENNKIDPRISRFVMPIGATINMDGTAL 101
P F + A+ TAF T S M+ +E I I F +P+GATINMDGTAL
Sbjct: 258 PISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMG-ISEGIYSFTLPLGATINMDGTAL 316
Query: 102 YEAVAAIFIAQ 112
Y+ VA FIA
Sbjct: 317 YQGVATFFIAN 327
>pdb|3V8G|A Chain A, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|B Chain B, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|C Chain C, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|D Chain D, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|E Chain E, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|F Chain F, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
Length = 422
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 42 PFRFTANMGQAIATAFGTASRLFIGYNAMQCLEENNKIDPRISRFVMPIGATINMDGTAL 101
P F + A+ TAF T S M+ +E I I F +P+GATINMDGTAL
Sbjct: 258 PISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMG-ISEGIYSFTLPLGATINMDGTAL 316
Query: 102 YEAVAAIFIAQ 112
Y+ VA FIA
Sbjct: 317 YQGVATFFIAN 327
>pdb|3KBC|A Chain A, Crystal Structure Of Gltph K55c-A364c Mutant Crosslinked
With Divalent Mercury
pdb|3KBC|B Chain B, Crystal Structure Of Gltph K55c-A364c Mutant Crosslinked
With Divalent Mercury
pdb|3KBC|C Chain C, Crystal Structure Of Gltph K55c-A364c Mutant Crosslinked
With Divalent Mercury
Length = 425
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 42 PFRFTANMGQAIATAFGTASRLFIGYNAMQCLEENNKIDPRISRFVMPIGATINMDGTAL 101
P F + A+ TAF T S M+ +E I I F +P+GATINMDGTAL
Sbjct: 258 PISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMG-ISEGIYSFTLPLGATINMDGTAL 316
Query: 102 YEAVAAIFIAQ 112
Y+ VA FIA
Sbjct: 317 YQGVATFFIAN 327
>pdb|1XFH|A Chain A, Structure Of Glutamate Transporter Homolog From Pyrococcus
Horikoshii
pdb|1XFH|B Chain B, Structure Of Glutamate Transporter Homolog From Pyrococcus
Horikoshii
pdb|1XFH|C Chain C, Structure Of Glutamate Transporter Homolog From Pyrococcus
Horikoshii
pdb|2NWW|A Chain A, Crystal Structure Of Gltph In Complex With Tboa
pdb|2NWW|B Chain B, Crystal Structure Of Gltph In Complex With Tboa
pdb|2NWW|C Chain C, Crystal Structure Of Gltph In Complex With Tboa
pdb|2NWX|A Chain A, Crystal Structure Of Gltph In Complex With L-Aspartate And
Sodium Ions
pdb|2NWX|B Chain B, Crystal Structure Of Gltph In Complex With L-Aspartate And
Sodium Ions
pdb|2NWX|C Chain C, Crystal Structure Of Gltph In Complex With L-Aspartate And
Sodium Ions
Length = 422
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 42 PFRFTANMGQAIATAFGTASRLFIGYNAMQCLEENNKIDPRISRFVMPIGATINMDGTAL 101
P F + A+ TAF T S M+ +E I I F +P+GATINMDGTAL
Sbjct: 258 PISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMG-ISEGIYSFTLPLGATINMDGTAL 316
Query: 102 YEAVAAIFIAQ 112
Y+ V FIA
Sbjct: 317 YQGVCTFFIAN 327
>pdb|2NWL|A Chain A, Crystal Structure Of Gltph In Complex With L-Asp
pdb|2NWL|B Chain B, Crystal Structure Of Gltph In Complex With L-Asp
pdb|2NWL|C Chain C, Crystal Structure Of Gltph In Complex With L-Asp
Length = 422
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 42 PFRFTANMGQAIATAFGTASRLFIGYNAMQCLEENNKIDPRISRFVMPIGATINMDGTAL 101
P F + A+ TAF T S M+ +E I I F +P+GATINMDGTAL
Sbjct: 258 PISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMG-ISEGIYSFTLPLGATINMDGTAL 316
Query: 102 YEAVAAIFIAQ 112
Y+ V FIA
Sbjct: 317 YQGVCTFFIAN 327
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.140 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,705,066
Number of Sequences: 62578
Number of extensions: 81658
Number of successful extensions: 164
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 5
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)