Query psy13812
Match_columns 120
No_of_seqs 116 out of 1162
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 21:07:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3787|consensus 100.0 9E-41 2E-45 270.4 10.5 118 1-118 254-371 (507)
2 PRK14695 serine/threonine tran 100.0 8.1E-33 1.8E-37 218.7 13.6 114 2-117 119-233 (319)
3 PRK13628 serine/threonine tran 100.0 9.1E-33 2E-37 224.1 13.4 114 2-117 205-319 (402)
4 COG1301 GltP Na+/H+-dicarboxyl 100.0 1.6E-32 3.5E-37 222.9 13.8 115 2-117 206-320 (415)
5 PRK11283 gltP glutamate/aspart 100.0 7.5E-32 1.6E-36 220.6 13.7 113 2-117 222-334 (437)
6 PRK01663 C4-dicarboxylate tran 100.0 1.1E-31 2.3E-36 219.3 13.3 113 2-117 211-323 (428)
7 PRK13027 C4-dicarboxylate tran 100.0 2.7E-31 5.8E-36 216.6 14.0 112 3-117 212-323 (421)
8 PF00375 SDF: Sodium:dicarboxy 100.0 1.5E-31 3.3E-36 215.4 8.8 115 2-117 199-313 (390)
9 COG1823 Predicted Na+/dicarbox 99.8 2.8E-21 6E-26 154.7 8.3 115 2-119 252-367 (458)
10 COG3633 SstT Na+/serine sympor 99.7 1.1E-18 2.4E-23 136.8 3.7 113 3-117 206-319 (407)
11 PF06808 DctM: DctM-like trans 35.7 1.1E+02 0.0023 25.2 5.5 45 75-119 293-355 (416)
12 PF03553 Na_H_antiporter: Na+/ 34.5 2.1E+02 0.0045 21.8 6.7 71 41-114 196-271 (303)
13 KOG1965|consensus 34.2 1.6E+02 0.0035 25.8 6.5 95 5-106 120-214 (575)
14 TIGR00840 b_cpa1 sodium/hydrog 31.3 3.4E+02 0.0075 23.4 9.0 38 63-102 142-179 (559)
15 COG0025 NhaP NhaP-type Na+/H+ 30.1 3.2E+02 0.0069 22.6 7.8 44 63-108 129-172 (429)
16 TIGR00210 gltS sodium--glutama 29.4 1.8E+02 0.0039 24.0 5.8 29 68-97 355-383 (398)
17 PF03904 DUF334: Domain of unk 29.1 2.1E+02 0.0046 22.1 5.7 18 40-57 195-214 (230)
18 PF03176 MMPL: MMPL family; I 24.3 1.6E+02 0.0034 22.8 4.5 34 8-41 273-306 (333)
19 COG2239 MgtE Mg/Co/Ni transpor 23.4 4.6E+02 0.0099 22.2 8.1 56 49-110 390-447 (451)
20 COG1963 Uncharacterized protei 21.0 2E+02 0.0044 20.8 4.0 58 1-60 1-63 (153)
No 1
>KOG3787|consensus
Probab=100.00 E-value=9e-41 Score=270.39 Aligned_cols=118 Identities=59% Similarity=0.886 Sum_probs=115.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHhHhHhHHHHHHHHhcCCCcccHHHHHHHHHHhCCCC
Q psy13812 1 MKSLSDTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTASRLFIGYNAMQCLEENNKID 80 (120)
Q Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~i~~~vv~~~~~~~~~~~np~~~~~~~~~~~l~A~~T~SS~atLPv~l~~~~~~lgv~ 80 (120)
|||++.+..+||+|+.++.+|.++|.++++|++||+.+|+||++|++++.+|+++||+|+||+||||++++|+||++|||
T Consensus 254 m~Dl~~~~~~Lg~Yv~TVi~GL~iH~~i~lPliYF~~TrkNP~~f~~Gm~Qal~TA~gTsSSsATLPitfkCleEn~gVD 333 (507)
T KOG3787|consen 254 MEDLGVTARQLGMYVVTVILGLFIHGFIVLPLIYFVVTRKNPFRFIAGLLQALATAFGTASSSATLPITFKCLEENLGVD 333 (507)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEEEEccChHHHHHHHHHHHHHHHhcccccccchHHHHHHHHhCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeecchhccccccHHHHHHHHHHHHHHhCCCC
Q psy13812 81 PRISRFVMPIGATINMDGTALYEAVAAIFIAQVRFVIP 118 (120)
Q Consensus 81 ~~i~~fvlPlG~tin~~G~al~~~i~~iFiaq~~g~~p 118 (120)
|+++||++|+|+|+||||+|+|++++++|+||++|++.
T Consensus 334 ~RiTRFVLPvGATINMDGtALYEAVAaIFIAQln~~~L 371 (507)
T KOG3787|consen 334 KRVTRFVLPVGATINMDGTALYEAVAAIFIAQLNNVEL 371 (507)
T ss_pred cceeeeecccCceecCChHHHHHHHHHHHHHHHhCcee
Confidence 99999999999999999999999999999999999863
No 2
>PRK14695 serine/threonine transporter SstT; Provisional
Probab=100.00 E-value=8.1e-33 Score=218.65 Aligned_cols=114 Identities=20% Similarity=0.281 Sum_probs=106.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHhHh-HhHHHHHHHHhcCCCcccHHHHHHHHHHhCCCC
Q psy13812 2 KSLSDTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFRFTA-NMGQAIATAFGTASRLFIGYNAMQCLEENNKID 80 (120)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~i~~~vv~~~~~~~~~~~np~~~~~-~~~~~~l~A~~T~SS~atLPv~l~~~~~~lgv~ 80 (120)
.|++.+ .++++|++++|.++++|.++++|++.+..+|+||++|+| ++++++++||+|+||++|||+++||+ ||+|+|
T Consensus 119 ~G~~~l-~~l~~~v~~~~~~~~i~~~vv~~~~~~~~~~~~p~~f~~~~~~~~~~~AfsT~SS~AtLP~~~~~~-e~lGv~ 196 (319)
T PRK14695 119 KGVGSL-ANYGILLVLLVTTMLFVAPVVNPLIAFFFMRRNPYPLVWNCLRVSGVTAFFTRSSATNIPVNMKLC-HDLGLN 196 (319)
T ss_pred hCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH-HHcCcC
Confidence 355555 699999999999999999999999988789999999965 58899999999999999999999999 679999
Q ss_pred cccceeeeecchhccccccHHHHHHHHHHHHHHhCCC
Q psy13812 81 PRISRFVMPIGATINMDGTALYEAVAAIFIAQVRFVI 117 (120)
Q Consensus 81 ~~i~~fvlPlG~tin~~G~al~~~i~~iFiaq~~g~~ 117 (120)
|++++|++|+|+|+||||+++|++++++|++|+||+|
T Consensus 197 ~~ia~fvlPLGatinmdG~aiy~~~~~iFiaq~~Gi~ 233 (319)
T PRK14695 197 PDTYSVSIPLGSTINMAGVAITINLLTLVTVNTLGIP 233 (319)
T ss_pred cccEeeeeccchhhCCCchHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999996
No 3
>PRK13628 serine/threonine transporter SstT; Provisional
Probab=100.00 E-value=9.1e-33 Score=224.06 Aligned_cols=114 Identities=20% Similarity=0.211 Sum_probs=107.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHh-HhHhHHHHHHHHhcCCCcccHHHHHHHHHHhCCCC
Q psy13812 2 KSLSDTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFRF-TANMGQAIATAFGTASRLFIGYNAMQCLEENNKID 80 (120)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~i~~~vv~~~~~~~~~~~np~~~-~~~~~~~~l~A~~T~SS~atLPv~l~~~~~~lgv~ 80 (120)
.|++.+ .++++|++++|.++++|.++++|.+++..+|+||+++ +|+++|++++||+|+||+||||++|||+ ||+|+|
T Consensus 205 ~g~~~l-~~l~~~v~~~~~~~~i~~~vv~~~i~~~~~~~~p~~~~~k~~~~~~~~AfsT~SS~AtLPv~m~~~-~~lGv~ 282 (402)
T PRK13628 205 TGFSAL-AGYAQLLAVLVGCMLFVALVVNPLIVFWKIRRNPYPLVFTCLRESGVTAFFTRSSAANIPVNMALC-EKLGLD 282 (402)
T ss_pred ccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHheehhHHhHHHHHHHHH-HHcCcC
Confidence 355554 5999999999999999999999999988899999998 8999999999999999999999999999 589999
Q ss_pred cccceeeeecchhccccccHHHHHHHHHHHHHHhCCC
Q psy13812 81 PRISRFVMPIGATINMDGTALYEAVAAIFIAQVRFVI 117 (120)
Q Consensus 81 ~~i~~fvlPlG~tin~~G~al~~~i~~iFiaq~~g~~ 117 (120)
|++++|++|+|+|+||||+++|++++++|+||+||+|
T Consensus 283 ~~i~~fvlPLGat~nmdG~aly~~i~~iFiaq~~Gi~ 319 (402)
T PRK13628 283 EDTYSVSIPLGATINMAGAAITITVLTLAAVHTLGIP 319 (402)
T ss_pred ccceeEEeecccccCCCccHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999996
No 4
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=100.00 E-value=1.6e-32 Score=222.91 Aligned_cols=115 Identities=32% Similarity=0.470 Sum_probs=109.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHhHhHhHHHHHHHHhcCCCcccHHHHHHHHHHhCCCCc
Q psy13812 2 KSLSDTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTASRLFIGYNAMQCLEENNKIDP 81 (120)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~i~~~vv~~~~~~~~~~~np~~~~~~~~~~~l~A~~T~SS~atLPv~l~~~~~~lgv~~ 81 (120)
.+++++ .+++++++++|++++++.+++||.+.+..+|.||++|+|.++|++++||+|+||++|||++||++||++|++|
T Consensus 206 ~G~~~L-~~l~~~v~~~~~~~~l~~~vvl~~~~~~~~g~s~~~~~r~~~~~~~~Af~T~SS~atLPv~m~~~e~~~Gv~~ 284 (415)
T COG1301 206 YGFGSL-LSLGKLVLAVYLGLLLFVFVVLGLLLKLLSGFSPFKFLRYISEALLLAFSTSSSEATLPVTMEKAEKSLGVPK 284 (415)
T ss_pred hcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhcCCCc
Confidence 456554 6999999999999999999999999987889999999999999999999999999999999999988899999
Q ss_pred ccceeeeecchhccccccHHHHHHHHHHHHHHhCCC
Q psy13812 82 RISRFVMPIGATINMDGTALYEAVAAIFIAQVRFVI 117 (120)
Q Consensus 82 ~i~~fvlPlG~tin~~G~al~~~i~~iFiaq~~g~~ 117 (120)
++++|++|+|+|+||||+++|+.++++|+||.||+|
T Consensus 285 ~i~~fvvPlG~t~nldGtaiy~~~a~~FIAq~~g~~ 320 (415)
T COG1301 285 SIVSFVVPLGYTFNLDGTAIYQTLAALFIAQAYGIP 320 (415)
T ss_pred ceeEEEeecCceeCCcchHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999996
No 5
>PRK11283 gltP glutamate/aspartate:proton symporter; Provisional
Probab=99.98 E-value=7.5e-32 Score=220.61 Aligned_cols=113 Identities=23% Similarity=0.330 Sum_probs=105.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHhHhHhHHHHHHHHhcCCCcccHHHHHHHHHHhCCCCc
Q psy13812 2 KSLSDTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTASRLFIGYNAMQCLEENNKIDP 81 (120)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~i~~~vv~~~~~~~~~~~np~~~~~~~~~~~l~A~~T~SS~atLPv~l~~~~~~lgv~~ 81 (120)
.|.+.+ .++++|++++|+++++|.+++++++.+ ++|+||++|+|+++|++++||+|+||+||||+++||+ ||+|+||
T Consensus 222 ~g~~~l-~~l~~~l~~~~~~~~l~~~vv~~~i~~-~~~~np~~~~k~~~~~~~~AfsT~SS~atLP~~~~~~-e~lGv~~ 298 (437)
T PRK11283 222 FGFASL-WPLAKLVLLVYFAILFFALVVLGIVAR-LCGLSIWILIRILKDELILAYSTASSETVLPRIIEKM-EAYGAPK 298 (437)
T ss_pred cCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHheccchhhhHHHHHHHH-HHcCcCc
Confidence 355554 589999999999999999999998775 5799999999999999999999999999999999999 5699999
Q ss_pred ccceeeeecchhccccccHHHHHHHHHHHHHHhCCC
Q psy13812 82 RISRFVMPIGATINMDGTALYEAVAAIFIAQVRFVI 117 (120)
Q Consensus 82 ~i~~fvlPlG~tin~~G~al~~~i~~iFiaq~~g~~ 117 (120)
++++|++|+|+|+||||+++|++++++|+||+||+|
T Consensus 299 ~ia~fvlPLGat~nmdG~aly~~l~~iFiaq~~Gi~ 334 (437)
T PRK11283 299 SITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGID 334 (437)
T ss_pred cceeEEeecccccCCCccHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999996
No 6
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=99.97 E-value=1.1e-31 Score=219.27 Aligned_cols=113 Identities=24% Similarity=0.336 Sum_probs=106.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHhHhHhHHHHHHHHhcCCCcccHHHHHHHHHHhCCCCc
Q psy13812 2 KSLSDTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTASRLFIGYNAMQCLEENNKIDP 81 (120)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~i~~~vv~~~~~~~~~~~np~~~~~~~~~~~l~A~~T~SS~atLPv~l~~~~~~lgv~~ 81 (120)
.|++. +.++++|++++|+++++|.++++|++.+ ++|+||++|+|+++|++++||+|+||+||+|+++||+ ||+|+||
T Consensus 211 ~g~~~-l~~l~~~l~~~~~~~~i~~~vv~~~i~~-~~~~~p~~f~k~~~~~~~~AfsT~SS~atLPv~i~~~-e~lgv~~ 287 (428)
T PRK01663 211 YGVGS-LVQLGQLIGCFYITCILFVFVVLGAIAR-LTGFSIFKFIRYIKEELLIVLGTSSSESALPRMMEKM-EKLGCKK 287 (428)
T ss_pred cCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHhhecccHHhHHHHHHHHH-HHcCCCc
Confidence 35555 5799999999999999999999998875 5899999999999999999999999999999999999 4799999
Q ss_pred ccceeeeecchhccccccHHHHHHHHHHHHHHhCCC
Q psy13812 82 RISRFVMPIGATINMDGTALYEAVAAIFIAQVRFVI 117 (120)
Q Consensus 82 ~i~~fvlPlG~tin~~G~al~~~i~~iFiaq~~g~~ 117 (120)
++++|++|+|+|+||||+++|++++++|+||+||+|
T Consensus 288 ~ia~fvlPLGatinm~G~aly~~~~~iFia~~~Gi~ 323 (428)
T PRK01663 288 SVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATNTP 323 (428)
T ss_pred cceeEEeecccccCCCccHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999995
No 7
>PRK13027 C4-dicarboxylate transporter DctA; Reviewed
Probab=99.97 E-value=2.7e-31 Score=216.55 Aligned_cols=112 Identities=25% Similarity=0.365 Sum_probs=105.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHhHhHhHHHHHHHHhcCCCcccHHHHHHHHHHhCCCCcc
Q psy13812 3 SLSDTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTASRLFIGYNAMQCLEENNKIDPR 82 (120)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~i~~~vv~~~~~~~~~~~np~~~~~~~~~~~l~A~~T~SS~atLPv~l~~~~~~lgv~~~ 82 (120)
|.+ .+.++++|++++|+++++|.+++++++.+ .+|.||++|+|+++|++++||+|+||+||+|+++||+ ||+|++|+
T Consensus 212 g~~-~l~~l~~~l~~~~~~~~i~~~vv~~~i~~-~~~~~p~~~~k~~~~~~~~Af~T~SS~AtLPv~~~~~-e~lgv~~~ 288 (421)
T PRK13027 212 GVG-SLKQLGMLVAVFYLTCFVFVVVVLGAVMR-LAGFSVFKLIRYLREELLIVLGTASSDAVLPQVMRKL-EHMGIKDS 288 (421)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHH-HHcCCCcc
Confidence 444 45799999999999999999999998875 6899999999999999999999999999999999999 57999999
Q ss_pred cceeeeecchhccccccHHHHHHHHHHHHHHhCCC
Q psy13812 83 ISRFVMPIGATINMDGTALYEAVAAIFIAQVRFVI 117 (120)
Q Consensus 83 i~~fvlPlG~tin~~G~al~~~i~~iFiaq~~g~~ 117 (120)
+++|++|+|+|+||||+++|++++++|+||+||+|
T Consensus 289 ia~fvlPLGatinm~G~aiy~~~~~~Fiaq~~G~~ 323 (421)
T PRK13027 289 TVGLVIPTGYSFNLDGFSIYLTLAAVFIAQATNTP 323 (421)
T ss_pred ceeEEeecccccCCCccHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999995
No 8
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=99.97 E-value=1.5e-31 Score=215.41 Aligned_cols=115 Identities=47% Similarity=0.685 Sum_probs=99.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHhHhHhHHHHHHHHhcCCCcccHHHHHHHHHHhCCCCc
Q psy13812 2 KSLSDTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTASRLFIGYNAMQCLEENNKIDP 81 (120)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~i~~~vv~~~~~~~~~~~np~~~~~~~~~~~l~A~~T~SS~atLPv~l~~~~~~lgv~~ 81 (120)
+|++.+ .++++|+++++.++++|.++++|++++..+|+||++++|+++|++++||+|+||++|+|+++||+||++|+||
T Consensus 199 ~~~~~l-~~l~~~v~~~~~~~~i~~~v~~pl~~~~~~~~np~~~~~~~~~~~l~Af~T~SS~atlP~~~~~~~~~~gv~~ 277 (390)
T PF00375_consen 199 QGLSIL-GALGKFVLTVYVALLIHLFVVLPLILFVLTRKNPFKFLKAMLPALLTAFSTSSSAATLPVTIECLEENLGVSR 277 (390)
T ss_dssp SCCGHH-HHHHHHHHHHHHHHHHHHHHTHHHHHH-TTT--HHHHHHHTHHHHHHHHHHT-TTTSHHHHHHHHHT-TT--H
T ss_pred cChhhH-HHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHhcCCCc
Confidence 455665 4999999999999999999999999988899999999999999999999999999999999999988899999
Q ss_pred ccceeeeecchhccccccHHHHHHHHHHHHHHhCCC
Q psy13812 82 RISRFVMPIGATINMDGTALYEAVAAIFIAQVRFVI 117 (120)
Q Consensus 82 ~i~~fvlPlG~tin~~G~al~~~i~~iFiaq~~g~~ 117 (120)
++++|++|+|+++||||+++|++++++|++|.+|+|
T Consensus 278 ~i~~fv~Plg~t~n~~G~a~~~~~~~iFia~~~gi~ 313 (390)
T PF00375_consen 278 SIASFVLPLGATINMDGTALYIAIAAIFIAQLYGID 313 (390)
T ss_dssp HHHHHHHHHHTTS--HHHHHHHHHHHHHHHHHHT--
T ss_pred ccceeeechhccccCCccchHHHHHHHHhhhccCce
Confidence 999999999999999999999999999999999996
No 9
>COG1823 Predicted Na+/dicarboxylate symporter [General function prediction only]
Probab=99.85 E-value=2.8e-21 Score=154.67 Aligned_cols=115 Identities=19% Similarity=0.345 Sum_probs=105.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHhHhHhHHHHHHHHhcCCCcccHHHHHHHHHHhCCCCc
Q psy13812 2 KSLSDTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTASRLFIGYNAMQCLEENNKIDP 81 (120)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~i~~~vv~~~~~~~~~~~np~~~~~~~~~~~l~A~~T~SS~atLPv~l~~~~~~lgv~~ 81 (120)
.+++++. ++|.|+...|++..+. |++..++. ...|.||.+|+|+.+|.+..||+++||++|+|.+.|.-++|+|+++
T Consensus 252 s~~~~I~-~Lg~FivAsY~Ai~~M-FvvH~iLL-~~~g~NPi~Y~Kkv~PvL~FAFtSRSSAatiPlnietQt~klGV~~ 328 (458)
T COG1823 252 SNLEDII-KLGSFIVASYIAIFIM-FVVHGILL-ALNGVNPIKYFKKVWPVLTFAFTSRSSAATIPLNIETQTRKLGVPE 328 (458)
T ss_pred ccHHHHH-HHHhHHHHHHHHHHHH-HHHHHHHH-HHcCCCHHHHHHHHhHHHhhheecccccccCCccHHHHHHhcCCcH
Confidence 4688875 9999999999999986 56666665 3689999999999999999999999999999999999989999999
Q ss_pred ccceeeeecchhcccccc-HHHHHHHHHHHHHHhCCCCC
Q psy13812 82 RISRFVMPIGATINMDGT-ALYEAVAAIFIAQVRFVIPI 119 (120)
Q Consensus 82 ~i~~fvlPlG~tin~~G~-al~~~i~~iFiaq~~g~~p~ 119 (120)
.+++|+...|+|++.||| .+|.++.++++|-.-|+||+
T Consensus 329 ~IANfaASFG~tiGQNGCAGiyPAmlAvMVAPtvgi~p~ 367 (458)
T COG1823 329 GIANFAASFGATIGQNGCAGIYPAMLAVMVAPTVGINPL 367 (458)
T ss_pred HHHHHHHHhccccccCCchhhhHHHHHHHhccccCCCCC
Confidence 999999999999999998 59999999999999999996
No 10
>COG3633 SstT Na+/serine symporter [Amino acid transport and metabolism]
Probab=99.74 E-value=1.1e-18 Score=136.77 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=100.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHh-HhHhHHHHHHHHhcCCCcccHHHHHHHHHHhCCCCc
Q psy13812 3 SLSDTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFRF-TANMGQAIATAFGTASRLFIGYNAMQCLEENNKIDP 81 (120)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~i~~~vv~~~~~~~~~~~np~~~-~~~~~~~~l~A~~T~SS~atLPv~l~~~~~~lgv~~ 81 (120)
|.+.+ ..+.++++..+..++...+++-|++.++..|+||++. +...+|.-.+||.|+||+|.+|++|+-+ ||+|.+|
T Consensus 206 G~~aL-~gYa~LL~vLvg~Mlfva~VVNpliv~~kiRrNPyPLV~~ClReSg~tAFFTRSSAANIPVNm~Lc-~kl~lde 283 (407)
T COG3633 206 GFGAL-WGYAQLLAVLVGCMLFVALVVNPLIVYWKIRRNPYPLVLTCLRESGVTAFFTRSSAANIPVNMALC-KKLGLDE 283 (407)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHhccceEEEEecCCCcchhHHHhhhcCeEEEEecccccCCcccHHHH-HHcCCCc
Confidence 34444 5788888888888888889999999887789999984 6778889999999999999999999988 7899999
Q ss_pred ccceeeeecchhccccccHHHHHHHHHHHHHHhCCC
Q psy13812 82 RISRFVMPIGATINMDGTALYEAVAAIFIAQVRFVI 117 (120)
Q Consensus 82 ~i~~fvlPlG~tin~~G~al~~~i~~iFiaq~~g~~ 117 (120)
+..+.++|+|+|+||.|.|+-..+-.+-.....|++
T Consensus 284 dtYsvSIPLGAtINMaGAAITItvLtLaAvhT~gI~ 319 (407)
T COG3633 284 DTYSVSIPLGATINMAGAAITITVLTLAAVHTLGIP 319 (407)
T ss_pred cceeEeeecCceeeccchhhhHHHHHHHHHHhcCcc
Confidence 999999999999999999999999888888888873
No 11
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=35.65 E-value=1.1e+02 Score=25.24 Aligned_cols=45 Identities=31% Similarity=0.378 Sum_probs=31.8
Q ss_pred HhCCCCcccceeeeecch----------------hccccccHHHHHHHHHH--HHHHhCCCCC
Q psy13812 75 ENNKIDPRISRFVMPIGA----------------TINMDGTALYEAVAAIF--IAQVRFVIPI 119 (120)
Q Consensus 75 ~~lgv~~~i~~fvlPlG~----------------tin~~G~al~~~i~~iF--iaq~~g~~p~ 119 (120)
...|++++++++...++. -+-||+++.+.....++ +++-.|+||+
T Consensus 293 ~~~g~~~~i~~~i~~l~~~~~~~l~l~~l~~lilG~~m~~~a~~ii~~pi~~P~~~~~Gidpi 355 (416)
T PF06808_consen 293 TLTGVPQAIAEFILSLSGSPWLVLLLIMLILLILGMFMDTTAAIIIVAPILAPIAQALGIDPI 355 (416)
T ss_pred HHcCccHHHHHHHHhcCcchHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhCcchh
Confidence 345777777776655542 25688888888888777 5677899885
No 12
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised. It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane
Probab=34.52 E-value=2.1e+02 Score=21.84 Aligned_cols=71 Identities=17% Similarity=0.017 Sum_probs=37.9
Q ss_pred cHHHh-HhHhHHHHHHHHhcCCCcccH----HHHHHHHHHhCCCCcccceeeeecchhccccccHHHHHHHHHHHHHHh
Q psy13812 41 WPFRF-TANMGQAIATAFGTASRLFIG----YNAMQCLEENNKIDPRISRFVMPIGATINMDGTALYEAVAAIFIAQVR 114 (120)
Q Consensus 41 np~~~-~~~~~~~~l~A~~T~SS~atL----Pv~l~~~~~~lgv~~~i~~fvlPlG~tin~~G~al~~~i~~iFiaq~~ 114 (120)
+|... ..-+.-..++++.|+|+..|. |+..+.. |++|++++...-.+=-|.++.- ...-..-+.++.++..
T Consensus 196 ~~~~l~~~~~l~~~~~~~~tgs~~~ti~i~~pi~~~l~-~~~g~~~~~~a~ai~~~~~~g~--~l~P~s~~~i~~~~~~ 271 (303)
T PF03553_consen 196 SPRSLPAVTFLLSIIISFATGSSWGTIAIMGPIFKPLA-EKMGISPPLLAGAIESGATFGD--PLSPWSDTTILSSSTL 271 (303)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHhcccHHHHHHHHHhhhhhcC--CCCcchHHHHHHHHHH
Confidence 44433 333444666778888875444 6666655 6789988655433333333321 2233344455555555
No 13
>KOG1965|consensus
Probab=34.21 E-value=1.6e+02 Score=25.76 Aligned_cols=95 Identities=13% Similarity=0.220 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHhHhHhHHHHHHHHhcCCCcccHHHHHHHHHHhCCCCcccc
Q psy13812 5 SDTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTASRLFIGYNAMQCLEENNKIDPRIS 84 (120)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~i~~~vv~~~~~~~~~~~np~~~~~~~~~~~l~A~~T~SS~atLPv~l~~~~~~lgv~~~i~ 84 (120)
++.+.+++..+.--..|+.+-.+++...++....+..+.++ ...+.++. +.- -+||-||+.-..=+++|+++...
T Consensus 120 ~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~--~f~d~L~f--Gal-iSATDPVtvLaIfnel~vd~~Ly 194 (575)
T KOG1965|consen 120 KQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDL--SFKDCLAF--GAL-ISATDPVTVLAIFNELGVDPKLY 194 (575)
T ss_pred hhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccc--cHHHHHHH--hhH-hcccCchHHHHHHHHhCCCccee
Confidence 35677778877777777777766666655543334555553 22222222 211 25889998888778899999998
Q ss_pred eeeeecchhccccccHHHHHHH
Q psy13812 85 RFVMPIGATINMDGTALYEAVA 106 (120)
Q Consensus 85 ~fvlPlG~tin~~G~al~~~i~ 106 (120)
.++. |-++--|++++...-.
T Consensus 195 ~LVF--GESvLNDAvsIVlf~~ 214 (575)
T KOG1965|consen 195 TLVF--GESVLNDAVSIVLFNT 214 (575)
T ss_pred eeee--cchhccchhHHHHHHH
Confidence 8774 8888888887665443
No 14
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=31.30 E-value=3.4e+02 Score=23.38 Aligned_cols=38 Identities=11% Similarity=0.194 Sum_probs=28.1
Q ss_pred cccHHHHHHHHHHhCCCCcccceeeeecchhccccccHHH
Q psy13812 63 LFIGYNAMQCLEENNKIDPRISRFVMPIGATINMDGTALY 102 (120)
Q Consensus 63 ~atLPv~l~~~~~~lgv~~~i~~fvlPlG~tin~~G~al~ 102 (120)
++|-|+.....-|+.++++++...+. |-+.--||.++.
T Consensus 142 SaTDPVAVlai~~~~~v~~~L~~ll~--gESllNDavaIV 179 (559)
T TIGR00840 142 SAVDPVAVLAVFEEYHVNEKLYIIIF--GESLLNDAVTVV 179 (559)
T ss_pred cCCchHHHHHHHHhcCCCcchhhhee--hhhhhhccHHHH
Confidence 56667766666688999999988764 677777887643
No 15
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=30.05 E-value=3.2e+02 Score=22.61 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=34.1
Q ss_pred cccHHHHHHHHHHhCCCCcccceeeeecchhccccccHHHHHHHHH
Q psy13812 63 LFIGYNAMQCLEENNKIDPRISRFVMPIGATINMDGTALYEAVAAI 108 (120)
Q Consensus 63 ~atLPv~l~~~~~~lgv~~~i~~fvlPlG~tin~~G~al~~~i~~i 108 (120)
++|-|++.....++.++||++..... |-+.--||.++.....++
T Consensus 129 spTDPv~v~~i~~~~~vp~ri~~iL~--gESl~ND~~giv~f~~~l 172 (429)
T COG0025 129 SPTDPVAVSPIFKRVRVPKRIRTILE--GESLLNDGVGIVLFKVAL 172 (429)
T ss_pred cCCCchhhHHHHhcCCCCHHHHHHHH--HHHHhhhHHHHHHHHHHH
Confidence 78999999999899999999987653 677777887765544433
No 16
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=29.37 E-value=1.8e+02 Score=24.03 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=21.8
Q ss_pred HHHHHHHHhCCCCcccceeeeecchhcccc
Q psy13812 68 NAMQCLEENNKIDPRISRFVMPIGATINMD 97 (120)
Q Consensus 68 v~l~~~~~~lgv~~~i~~fvlPlG~tin~~ 97 (120)
.+|+...||+|- .+.+-+++|+=..+-.|
T Consensus 355 anm~av~~~yg~-s~~af~ivPlvgaf~id 383 (398)
T TIGR00210 355 ANMQAVTERFGP-SHQAFIVVPLVGAFFID 383 (398)
T ss_pred HHHHHHHhccCC-CCcceehhhhHHHHHHH
Confidence 688999899987 56688899975554433
No 17
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=29.07 E-value=2.1e+02 Score=22.09 Aligned_cols=18 Identities=11% Similarity=0.002 Sum_probs=9.6
Q ss_pred ccHHHhHhHhHH--HHHHHH
Q psy13812 40 EWPFRFTANMGQ--AIATAF 57 (120)
Q Consensus 40 ~np~~~~~~~~~--~~l~A~ 57 (120)
.+.|++++.+.. |++.|+
T Consensus 195 e~~~~~lwyi~Y~vPY~~~i 214 (230)
T PF03904_consen 195 ESFWTYLWYIAYLVPYIFAI 214 (230)
T ss_pred HhHHHHHHHHHHhhHHHHHH
Confidence 456666665554 444444
No 18
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=24.30 E-value=1.6e+02 Score=22.83 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Q psy13812 8 VGQLGLYFITVLLGLLIHGFILLPAMYTFFVREW 41 (120)
Q Consensus 8 ~~~l~~~~~~~~~~~~i~~~vv~~~~~~~~~~~n 41 (120)
+.++|..+....+...+..+.++|.+..+..+.+
T Consensus 273 ~~~~G~~~~~gi~~~~l~~l~llPall~~~~~~~ 306 (333)
T PF03176_consen 273 LRQFGLLAAIGILIALLLSLTLLPALLSLLGRWR 306 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 3455555555555555555556666665554443
No 19
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=23.42 E-value=4.6e+02 Score=22.18 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=38.1
Q ss_pred hHHHHHHHHhcCC-CcccHHHHHHHHHHhCCCCcccceeeeecchhcc-ccccHHHHHHHHHHH
Q psy13812 49 MGQAIATAFGTAS-RLFIGYNAMQCLEENNKIDPRISRFVMPIGATIN-MDGTALYEAVAAIFI 110 (120)
Q Consensus 49 ~~~~~l~A~~T~S-S~atLPv~l~~~~~~lgv~~~i~~fvlPlG~tin-~~G~al~~~i~~iFi 110 (120)
...+++.....++ .-..+|+.++ |+|+++.+++ -|+=+|++ ..|--+|+.++..+.
T Consensus 390 v~~al~~~~~~A~l~G~~iP~ll~----kl~~DPAvaS--~p~iTTl~D~~g~~iyf~ia~~~l 447 (451)
T COG2239 390 VALALLLNILFAALVGVLIPILLK----KLGLDPAVAS--GPLITTLTDITGLLIYFGIATSLL 447 (451)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHH----HcCCCchhhc--cchHHhhccchhHhhHHHHHHHHh
Confidence 3344444444444 4566788765 5799998875 68888998 557789998887543
No 20
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.04 E-value=2e+02 Score=20.78 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=32.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHhHhH-----hHHHHHHHHhcC
Q psy13812 1 MKSLSDTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFRFTAN-----MGQAIATAFGTA 60 (120)
Q Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~i~~~vv~~~~~~~~~~~np~~~~~~-----~~~~~l~A~~T~ 60 (120)
|+|+.+++.+--. .+.+++++.-+++=+++-+....|.|+--++.. ...++.+|++|+
T Consensus 1 m~~~~~if~n~~l--lsal~a~~~AQvIKv~I~~~~~rk~~~~~~~sTGGMPSsHSA~VtALat~ 63 (153)
T COG1963 1 MQDLMEIFTNTPL--LSALVAILLAQVIKVLIELIRTRKLNVTLLFSTGGMPSSHSALVTALATS 63 (153)
T ss_pred CchHHHHHcCCHH--HHHHHHHHHHHHHHHHHHHHHhccccceeeeecCCCCchHHHHHHHHHHH
Confidence 6788887765433 444455555566666666544446666544331 223556666553
Done!