Query psy13812
Match_columns 120
No_of_seqs 116 out of 1162
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 21:07:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nwl_A GLTPH, glutamate sympor 100.0 1E-33 3.6E-38 229.5 7.6 112 3-117 221-332 (422)
2 4gof_A Small glutamine-rich te 25.5 32 0.0011 19.5 1.5 25 62-86 26-50 (52)
3 2lxb_A Small glutamine-rich te 17.2 68 0.0023 19.5 1.8 26 62-87 31-56 (74)
4 4gt9_A TS, tsase, thymidylate 16.0 27 0.00093 25.4 -0.3 21 76-96 150-170 (232)
5 4asv_A Small glutamine-rich te 15.6 75 0.0026 20.1 1.7 25 62-86 43-67 (92)
6 1dd4_C 50S ribosomal protein L 13.9 98 0.0034 16.4 1.7 14 69-82 21-34 (40)
7 2l0e_A Sodium/hydrogen exchang 13.6 91 0.0031 15.8 1.4 19 63-81 14-32 (33)
8 1v18_B APC protein, adenomatou 13.1 15 0.00052 20.3 -1.8 12 57-68 19-30 (47)
9 2zy9_A Mg2+ transporter MGTE; 12.5 5.1E+02 0.018 20.2 7.0 42 63-110 428-470 (473)
10 2eo2_A Adult MALE hypothalamus 11.7 1.1E+02 0.0037 18.5 1.5 15 67-82 31-45 (71)
No 1
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=100.00 E-value=1e-33 Score=229.50 Aligned_cols=112 Identities=32% Similarity=0.384 Sum_probs=106.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHhHhHhHHHHHHHHhcCCCcccHHHHHHHHHHhCCCCcc
Q psy13812 3 SLSDTVGQLGLYFITVLLGLLIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTASRLFIGYNAMQCLEENNKIDPR 82 (120)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~i~~~vv~~~~~~~~~~~np~~~~~~~~~~~l~A~~T~SS~atLPv~l~~~~~~lgv~~~ 82 (120)
|++. +.++++|++++|+++++|.+++||++.+ .+|+||++|+|+++|++++||+|+||+||+|++|||+|| +|+||+
T Consensus 221 g~~~-l~~l~~~i~~~~~~~~i~~~vv~~~~~~-~~~~np~~~~k~~~~a~~~Af~T~SS~AtLPv~m~~~~~-lGv~~~ 297 (422)
T 2nwl_A 221 GVHV-VGELAKVTAAVYVGLTLQILLVYFVLLK-IYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKE-MGISEG 297 (422)
T ss_dssp GGGC-CTHHHHHHHHHHHHHHHHHHHTHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHT-TTCCHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHhccHHhHHHHHHHHHHH-cCcCcc
Confidence 4444 3689999999999999999999999998 889999999999999999999999999999999999976 999999
Q ss_pred cceeeeecchhccccccHHHHHHHHHHHHHHhCCC
Q psy13812 83 ISRFVMPIGATINMDGTALYEAVAAIFIAQVRFVI 117 (120)
Q Consensus 83 i~~fvlPlG~tin~~G~al~~~i~~iFiaq~~g~~ 117 (120)
+++|++|+|+|+||||+++|++++++|+||.||+|
T Consensus 298 i~~fvlPlGatinmdGtaiy~~~~aifiaq~~Gi~ 332 (422)
T 2nwl_A 298 IYSFTLPLGATINMDGTALYQGVCTFFIANALGSH 332 (422)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred eeeEEeechhhhCCCchHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999996
No 2
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=25.49 E-value=32 Score=19.53 Aligned_cols=25 Identities=24% Similarity=0.092 Sum_probs=20.2
Q ss_pred CcccHHHHHHHHHHhCCCCccccee
Q psy13812 62 RLFIGYNAMQCLEENNKIDPRISRF 86 (120)
Q Consensus 62 S~atLPv~l~~~~~~lgv~~~i~~f 86 (120)
..-+|-+.++|+++-+|++++=.++
T Consensus 26 ~~ESleVAiqCi~~aF~v~~~d~~l 50 (52)
T 4gof_A 26 AQESLEVAIQCLETAFGVTVEDSDL 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHTCCSSCCTT
T ss_pred HHHHHHHHHHHHHHHcCCCcccccc
Confidence 4667889999999999998875443
No 3
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=17.19 E-value=68 Score=19.48 Aligned_cols=26 Identities=15% Similarity=0.051 Sum_probs=20.9
Q ss_pred CcccHHHHHHHHHHhCCCCcccceee
Q psy13812 62 RLFIGYNAMQCLEENNKIDPRISRFV 87 (120)
Q Consensus 62 S~atLPv~l~~~~~~lgv~~~i~~fv 87 (120)
..-+|-+.++|+++-++++++-....
T Consensus 31 ~~ESLeVAiqCI~~aF~v~~~d~~~~ 56 (74)
T 2lxb_A 31 GADSLNVAMDCISEAFGFEREAVSGI 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 35678899999999999998776533
No 4
>4gt9_A TS, tsase, thymidylate synthase THYX; flavin-dependent thymidylate synthase, TM0449, FAD, DUMP, 5, methylenetetrahydrofolate, transferase; HET: FAD UMP MEF; 1.39A {Thermotoga maritima} PDB: 1kq4_A 1o25_A* 1o24_A* 1o27_A* 1o28_A* 1o29_A* 1o2a_A* 1o2b_A* 1o26_A* 4gta_A* 4gtb_A* 4gtl_A* 3g4a_A* 3g4c_A* 4gtd_A* 4gtc_A* 4gte_A* 4gtf_A* 3n0b_A* 3n0c_A*
Probab=16.01 E-value=27 Score=25.44 Aligned_cols=21 Identities=14% Similarity=0.441 Sum_probs=17.5
Q ss_pred hCCCCcccceeeeecchhccc
Q psy13812 76 NNKIDPRISRFVMPIGATINM 96 (120)
Q Consensus 76 ~lgv~~~i~~fvlPlG~tin~ 96 (120)
+.|++++.+++++|.++....
T Consensus 150 ~~Gva~E~AR~vLP~a~~T~~ 170 (232)
T 4gt9_A 150 ESGVPREVARIVLPLNLYTRF 170 (232)
T ss_dssp HTTCCHHHHGGGSCTTBEEEE
T ss_pred HcCCcHHHHHhhcccceEEEE
Confidence 359999999999999876553
No 5
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=15.63 E-value=75 Score=20.15 Aligned_cols=25 Identities=16% Similarity=0.012 Sum_probs=20.7
Q ss_pred CcccHHHHHHHHHHhCCCCccccee
Q psy13812 62 RLFIGYNAMQCLEENNKIDPRISRF 86 (120)
Q Consensus 62 S~atLPv~l~~~~~~lgv~~~i~~f 86 (120)
..=+|=+.++|+++-+||+++-.+.
T Consensus 43 ~~ESLEVAIqCI~~AF~Vd~~D~~~ 67 (92)
T 4asv_A 43 GADSLNVAMDCISEAFGFEREAVSG 67 (92)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGHHH
T ss_pred HHHHHHHHHHHHHHHhCCCchhhhH
Confidence 4567889999999999999887653
No 6
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=13.87 E-value=98 Score=16.40 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=10.6
Q ss_pred HHHHHHHhCCCCcc
Q psy13812 69 AMQCLEENNKIDPR 82 (120)
Q Consensus 69 ~l~~~~~~lgv~~~ 82 (120)
..+.++|++||+..
T Consensus 21 Lvk~leekfGVsaa 34 (40)
T 1dd4_C 21 LVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHTCCCSC
T ss_pred HHHHHHHHHCCCcc
Confidence 45668899999863
No 7
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=13.55 E-value=91 Score=15.76 Aligned_cols=19 Identities=11% Similarity=-0.095 Sum_probs=14.6
Q ss_pred cccHHHHHHHHHHhCCCCc
Q psy13812 63 LFIGYNAMQCLEENNKIDP 81 (120)
Q Consensus 63 ~atLPv~l~~~~~~lgv~~ 81 (120)
++|-|+.....-|++++++
T Consensus 14 s~TDpVavlaif~~~~vp~ 32 (33)
T 2l0e_A 14 SAVDPVAVLAVFEEIHKKK 32 (33)
T ss_dssp TTCCHHHHHHHHHHHTTTC
T ss_pred cCCChHHHHHHHHHcCCCC
Confidence 5778888877777788875
No 8
>1v18_B APC protein, adenomatous polyposis coli; signaling protein, signalling complex, WNT signal, beta-catenin degradation complex, cell adhesion; HET: SEP; 2.1A {Homo sapiens}
Probab=13.08 E-value=15 Score=20.32 Aligned_cols=12 Identities=25% Similarity=0.033 Sum_probs=6.1
Q ss_pred HhcCCCcccHHH
Q psy13812 57 FGTASRLFIGYN 68 (120)
Q Consensus 57 ~~T~SS~atLPv 68 (120)
|+++||..+||+
T Consensus 19 FScaSSLSAL~l 30 (47)
T 1v18_B 19 FSCSSSLSALSL 30 (47)
T ss_dssp CC----CCCCCC
T ss_pred ccchhccccccc
Confidence 788898888874
No 9
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=12.48 E-value=5.1e+02 Score=20.24 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=32.2
Q ss_pred cccHHHHHHHHHHhCCCCcccceeeeecchhcc-ccccHHHHHHHHHHH
Q psy13812 63 LFIGYNAMQCLEENNKIDPRISRFVMPIGATIN-MDGTALYEAVAAIFI 110 (120)
Q Consensus 63 ~atLPv~l~~~~~~lgv~~~i~~fvlPlG~tin-~~G~al~~~i~~iFi 110 (120)
-..+|..++ |+|+++.+++ .|+=+|++ --|..+|+.++.+|+
T Consensus 428 g~~~p~~~~----~~~~DPa~~s--~p~itt~~D~~g~~~~~~~a~~~l 470 (473)
T 2zy9_A 428 GAMLPFLLR----RLGVDPALVS--NPLVATLSDVTGLLIYLSVARLLL 470 (473)
T ss_dssp HTTHHHHHH----HHTCCGGGSC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HcCCCccccc--cchHHHHHHHHHHHHHHHHHHHHH
Confidence 345687765 5699998875 57777877 558899999998886
No 10
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=11.67 E-value=1.1e+02 Score=18.47 Aligned_cols=15 Identities=13% Similarity=0.016 Sum_probs=12.0
Q ss_pred HHHHHHHHHhCCCCcc
Q psy13812 67 YNAMQCLEENNKIDPR 82 (120)
Q Consensus 67 Pv~l~~~~~~lgv~~~ 82 (120)
|+.++.+ +++|+++.
T Consensus 31 ~iql~RL-~kLGI~kt 45 (71)
T 2eo2_A 31 EIQLSRL-KKLGIHKT 45 (71)
T ss_dssp HHHHHHH-HHHTCCCC
T ss_pred HHHHHHH-HHcCCCCC
Confidence 6788888 77898764
Done!