RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13812
(120 letters)
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 405
Score = 39.7 bits (92), Expect = 2e-05
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 13 LYFITVLLGLLIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTASRLFIGYNAMQC 72
+ L +L+ + P F + A+ TAF T S M+
Sbjct: 218 AKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRV 277
Query: 73 LEENNKIDPRISRFVMPIGATINMDGTALYEAVAAIFIAQV 113
+E I I F +P+GATINMDGTALY+ V FIA
Sbjct: 278 AKEMG-ISEGIYSFTLPLGATINMDGTALYQGVCTFFIANA 317
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas
viridis [TaxId: 1079]}
Length = 323
Score = 29.7 bits (67), Expect = 0.073
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 23 LIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTASRLFI 65
L+ G + ++ ++++R + +G IA F A +
Sbjct: 114 LMAGLFMTLSLGSWWIRVYSRARALGLGTHIAWNFAAAIFFVL 156
>d1eysl_ f.26.1.1 (L:) L (light) subunit {Thermochromatium tepidum
[TaxId: 1050]}
Length = 280
Score = 27.8 bits (62), Expect = 0.31
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 23 LIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTASRLFI 65
I A ++ +RE +G + AF A ++
Sbjct: 95 QIITICAAGAFISWALREVEICRKLGIGFHVPFAFSFAIGAYL 137
>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum
[TaxId: 1050]}
Length = 318
Score = 27.4 bits (61), Expect = 0.48
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 23 LIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTASRLFI 65
LI G L ++ ++VR + M Q ++ AF A ++
Sbjct: 115 LIAGLFLTLSILLWWVRTYKRAEALGMSQHLSWAFAAAIFFYL 157
>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 303
Score = 27.0 bits (60), Expect = 0.60
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 23 LIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTASRLFI 65
LI F + A+++++ R + MG+ A AF +A L++
Sbjct: 116 LIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAIWLWM 158
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga
maritima [TaxId: 2336]}
Length = 209
Score = 25.5 bits (55), Expect = 1.5
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 63 LFIGYNAMQCLEENNKIDPRISRFVMPIGATINMDGTALYEAVAAIFIAQVRFVIPI 119
+G + I ++P+G T + EA + + +IP+
Sbjct: 108 CHLGDLGHVLTPAQVEEIGEIDVLLVPVGGTYTIGP---KEAKEVADLLNAKVIIPM 161
>d2j8cl1 f.26.1.1 (L:1-281) L (light) subunit {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 281
Score = 25.4 bits (56), Expect = 1.7
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 23 LIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTASRLFI 65
I A ++ +RE +G I AF A ++
Sbjct: 87 QIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYL 129
>d2i5nl1 f.26.1.1 (L:1-273) L (light) subunit {Rhodopseudomonas
viridis [TaxId: 1079]}
Length = 273
Score = 25.4 bits (56), Expect = 1.8
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 23 LIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTASRLFI 65
L A ++ +RE +G + AF +F
Sbjct: 87 QAITVCALGAFISWMLREVEISRKLGIGWHVPLAFCVPIFMFC 129
>d2k8ea2 d.348.1.1 (A:75-126) Uncharacterized protein YegP
{Escherichia coli [TaxId: 562]}
Length = 52
Score = 23.9 bits (52), Expect = 1.9
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 40 EWPFRFTANMGQAIATAFGTASR 62
++ F A Q I ++ A+
Sbjct: 7 KFYFNLKAANHQIIGSSQMYATA 29
>d2k7ia1 d.348.1.1 (A:1-62) Uncharacterized protein Atu0232
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 62
Score = 24.3 bits (53), Expect = 2.0
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 33 MYTFFVR-----EWPFRFTANMGQAIATAFGTASR 62
MY F + E+ FRF A+ G+ + ++ G ++
Sbjct: 1 MYKFEIYQDKAGEYRFRFKASNGETMFSSEGYKAK 35
>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate
phosphoribosyltransferase EF2626 {Enterococcus faecalis
[TaxId: 1351]}
Length = 137
Score = 24.8 bits (54), Expect = 2.8
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 13 LYFITVLLGLLIHGFILLPAMYTFFVREWPFRF 45
+Y I ++ G L A++ + RE PF
Sbjct: 13 MYQINMMQTYWELGRADLHAVFECYFREMPFNH 45
>d2axta1 f.26.1.1 (A:10-344) Photosystem Q(B) protein 1, PsbA1
{Thermosynechococcus elongatus [TaxId: 146786]}
Length = 335
Score = 24.8 bits (54), Expect = 3.2
Identities = 7/42 (16%), Positives = 12/42 (28%)
Query: 23 LIHGFILLPAMYTFFVREWPFRFTANMGQAIATAFGTASRLF 64
+ F L + R+W + M I A+
Sbjct: 104 QLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASA 145
>d3bida1 d.348.1.1 (A:1-56) Uncharacterized protein NMB1088
{Neisseria meningitidis [TaxId: 487]}
Length = 56
Score = 23.1 bits (50), Expect = 3.9
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 40 EWPFRFTANMGQAIATAFGTASR 62
E+ +R A + IA G S+
Sbjct: 12 EYRWRLKAANHEIIAQGEGYTSK 34
>d2axtd1 f.26.1.1 (D:13-352) Photosystem II reaction center d2
protein PsbD2 {Thermosynechococcus elongatus [TaxId:
146786]}
Length = 340
Score = 24.4 bits (53), Expect = 4.7
Identities = 6/40 (15%), Positives = 13/40 (32%)
Query: 26 GFILLPAMYTFFVREWPFRFTANMGQAIATAFGTASRLFI 65
+ F +R++ + A AF +F+
Sbjct: 103 ALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFV 142
>d2k49a2 d.348.1.1 (A:1-58) Uncharacterized protein SO3888
{Shewanella oneidensis [TaxId: 70863]}
Length = 58
Score = 22.7 bits (49), Expect = 6.6
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 40 EWPFRFTANMGQAIATAFGTASR 62
++ F A G+ I T+ +
Sbjct: 14 QFKFVLKAGNGEVILTSELYTGK 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.331 0.144 0.431
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 436,926
Number of extensions: 18085
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 20
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.1 bits)