BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13814
(75 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V2G|A Chain A, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Monoclinic Form
pdb|2V2G|B Chain B, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Monoclinic Form
pdb|2V2G|C Chain C, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Monoclinic Form
pdb|2V2G|D Chain D, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Monoclinic Form
pdb|2V32|A Chain A, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Monoclinic Form 2
pdb|2V32|B Chain B, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Monoclinic Form 2
pdb|2V32|C Chain C, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Monoclinic Form 2
pdb|2V32|D Chain D, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Monoclinic Form 2
pdb|2V41|A Chain A, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|B Chain B, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|C Chain C, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|D Chain D, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|E Chain E, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|F Chain F, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|G Chain G, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|H Chain H, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Orthorhombic Form
Length = 233
Score = 71.2 bits (173), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 3 DIKNYCLD-IKGDFPFAIIGDENRDLAVXXXXXXXXXXXXXXTAITVRAVYIIGPDRKLK 61
D+K CL +KGD P+ II DE R+LAV +T RAV+IIGPD+KLK
Sbjct: 83 DVK--CLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLK 140
Query: 62 LSIVYPASTGRS 73
LSI+YPA+TGR+
Sbjct: 141 LSILYPATTGRN 152
>pdb|1PRX|A Chain A, Horf6 A Novel Human Peroxidase Enzyme
pdb|1PRX|B Chain B, Horf6 A Novel Human Peroxidase Enzyme
Length = 224
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 15 FPFAIIGDENRDLAVXXXXXXXXXXXXXXTAITVRAVYIIGPDRKLKLSIVYPASTGRSV 74
PF II D NR+LA+ +T R V++ GPD+KLKLSI+YPA+TGR+
Sbjct: 98 LPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNF 157
Query: 75 E 75
+
Sbjct: 158 D 158
>pdb|3TB2|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|3TB2|B Chain B, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|3TB2|C Chain C, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|3TB2|D Chain D, 1-Cys Peroxidoxin From Plasmodium Yoelli
Length = 220
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 1 MSDIKNYCLDIKGDFPFAIIGDENRDLAVXXXXXXXXXXXXXXTAITVRAVYIIGPDRKL 60
+ DIK Y K + P I+ DE+R+LA +T R ++ I P++K+
Sbjct: 83 IEDIKYYGKLNKWEIP--IVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKI 140
Query: 61 KLSIVYPASTGRSVE 75
K +++YPA+TGR+
Sbjct: 141 KATVLYPATTGRNAH 155
>pdb|1XCC|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|1XCC|B Chain B, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|1XCC|C Chain C, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|1XCC|D Chain D, 1-Cys Peroxidoxin From Plasmodium Yoelli
Length = 220
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 1 MSDIKNYCLDIKGDFPFAIIGDENRDLAVXXXXXXXXXXXXXXTAITVRAVYIIGPDRKL 60
+ DIK Y K + P I+ DE+R+LA +T R ++ I P++K+
Sbjct: 83 IEDIKYYGKLNKWEIP--IVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKI 140
Query: 61 KLSIVYPASTGRSVE 75
K +++YPA+TGR+
Sbjct: 141 KATVLYPATTGRNAH 155
>pdb|1E2Y|A Chain A, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|B Chain B, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|C Chain C, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|D Chain D, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|E Chain E, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|F Chain F, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|G Chain G, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|H Chain H, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|I Chain I, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|J Chain J, Tryparedoxin Peroxidase From Crithidia Fasciculata
Length = 188
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 44 TAITVRAVYIIGPDRKLKLSIVYPASTGRSVE 75
+ + R V+II P+ KL+ I+ GR+VE
Sbjct: 123 SGVAYRGVFIIDPNGKLRQIIINDXPIGRNVE 154
>pdb|3JZ4|C Chain C, Crystal Structure Of E. Coli Nadp Dependent Enzyme
Length = 481
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 3 DIKNYCLDIKGDFPFAIIGDENRDLAV 29
DIK L++ G+ PF + D + D AV
Sbjct: 247 DIKKVSLELGGNAPFIVFDDADLDKAV 273
>pdb|3JZ4|A Chain A, Crystal Structure Of E. Coli Nadp Dependent Enzyme
pdb|3JZ4|B Chain B, Crystal Structure Of E. Coli Nadp Dependent Enzyme
pdb|3JZ4|D Chain D, Crystal Structure Of E. Coli Nadp Dependent Enzyme
Length = 481
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 3 DIKNYCLDIKGDFPFAIIGDENRDLAV 29
DIK L++ G+ PF + D + D AV
Sbjct: 247 DIKKVSLELGGNAPFIVFDDADLDKAV 273
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,671,136
Number of Sequences: 62578
Number of extensions: 34699
Number of successful extensions: 44
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 7
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)