RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13814
(75 letters)
>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin
peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}
Length = 194
Score = 44.4 bits (104), Expect = 1e-07
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 12 KGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTG 71
G I+ D+ + + +L EE+ + R ++II P + L+ V G
Sbjct: 94 LGQMNIPILADKTKCIMKSYGVLKEEDG------VAYRGLFIIDPKQNLRQITVNDLPVG 147
Query: 72 RSV 74
R V
Sbjct: 148 RDV 150
>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 220
Score = 43.6 bits (102), Expect = 2e-07
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 1 MSDIKNYCLDIKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKL 60
+ PF II D NR+LA+ L +LD K+ +T R V++ GPD+KL
Sbjct: 80 KDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKL 139
Query: 61 KLSIVYPASTGRSVE 75
KLSI+YPA+TGR+ +
Sbjct: 140 KLSILYPATTGRNFD 154
>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA
{Helicobacter pylori [TaxId: 210]}
Length = 170
Score = 42.5 bits (99), Expect = 4e-07
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 6 NYCLDIKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIV 65
G F ++ D + ++ D+L EE I +R ++I + K++ +++
Sbjct: 88 PVEKGGIGQVSFPMVADITKSISRDYDVLFEEA-------IALRGAFLIDKNMKVRHAVI 140
Query: 66 YPASTGRSVE 75
GR+ +
Sbjct: 141 NDLPLGRNAD 150
>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin
peroxidase homologue) {Crithidia fasciculata [TaxId:
5656]}
Length = 167
Score = 41.8 bits (97), Expect = 7e-07
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 14 DFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRS 73
++ D+ + +A +LDE++ R V+II P+ KL+ I+ GR+
Sbjct: 96 PMAIPMLADKTKAIARAYGVLDEDSGV------AYRGVFIIDPNGKLRQIIINDMPIGRN 149
Query: 74 VE 75
VE
Sbjct: 150 VE 151
>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii
yoelii [TaxId: 73239]}
Length = 219
Score = 40.9 bits (95), Expect = 2e-06
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 1 MSDIKNYCLDIKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKL 60
+ I+ DE+R+LA KL ++DE+ K+ +T R ++ I P++K+
Sbjct: 80 KWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKI 139
Query: 61 KLSIVYPASTGR 72
K +++YPA+TGR
Sbjct: 140 KATVLYPATTGR 151
>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin
peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 197
Score = 40.5 bits (94), Expect = 3e-06
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 13 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 72
G ++ D R L+ +L + I R ++II L+ V GR
Sbjct: 96 GPLNIPLLADVTRRLSEDYGVLKTDEG------IAYRGLFIIDGKGVLRQITVNDLPVGR 149
Query: 73 SV 74
SV
Sbjct: 150 SV 151
>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 158
Score = 39.1 bits (90), Expect = 8e-06
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 12 KGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTG 71
G A++ D + ++ + +R ++II P+ +K V G
Sbjct: 87 LGHMNIALLSDLTKQISRDY------GVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVG 140
Query: 72 RSVE 75
RSVE
Sbjct: 141 RSVE 144
>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC
{Amphibacillus xylanus [TaxId: 1449]}
Length = 166
Score = 38.0 bits (87), Expect = 2e-05
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 12 KGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTG 71
G + +IGD ++ ++ + D+L+EE + R +II PD ++ + G
Sbjct: 89 VGSIEYIMIGDPSQTISRQFDVLNEETG------LADRGTFIIDPDGVIQAIEINADGIG 142
Query: 72 RSVE 75
R
Sbjct: 143 RDAS 146
>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 169
Score = 37.4 bits (85), Expect = 4e-05
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 13 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 72
PF ++ D R+L+ +L+ + + R +I+ P+ +++ S GR
Sbjct: 103 KTLPFPMLSDIKRELSQAAGVLNADGVAD-------RVTFIVDPNNEIQFVSATAGSVGR 155
Query: 73 SVE 75
+V+
Sbjct: 156 NVD 158
>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 35.7 bits (81), Expect = 1e-04
Identities = 11/72 (15%), Positives = 27/72 (37%)
Query: 4 IKNYCLDIKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLS 63
+ K + ++ D + DLL +++ ++ ++ ++ D +K
Sbjct: 81 TGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKAL 140
Query: 64 IVYPASTGRSVE 75
V P TG +
Sbjct: 141 NVEPDGTGLTCS 152
>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli
[TaxId: 562]}
Length = 164
Score = 29.4 bits (65), Expect = 0.020
Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 5 KNYCLDIKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSI 64
+C + + N + + + + RAV +I + + S
Sbjct: 91 SRFCGAEGLNNVITLSTFRNAEFLQAYGVAIADGP---LKGLAARAVVVIDENDNVIFSQ 147
Query: 65 VYP 67
+
Sbjct: 148 LVD 150
>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae
[TaxId: 727]}
Length = 164
Score = 27.1 bits (59), Expect = 0.16
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 5 KNYCLDIKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSI 64
+C + + N L +L + + +T RAV ++ + S
Sbjct: 89 ARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGP---LAGLTSRAVIVLDEQNNVLHSQ 145
Query: 65 VYP 67
+
Sbjct: 146 LVE 148
>d2gtia1 c.66.1.48 (A:1-194) Nsp15 {Murine hepatitis virus, MHV
[TaxId: 11138]}
Length = 194
Score = 23.2 bits (50), Expect = 3.2
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 5 KNYCLDIKGDFPFAIIGDENRDLAVKLDLLDE---ENKNNLETAITV 48
+ G+ P A+IG++ + K+ D +N T + V
Sbjct: 12 AGHFDGRAGELPCAVIGEK---VIAKIQNEDVVVFKNNTPFPTNVAV 55
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB,
C-terminal domain {Aspergillus aculeatus [TaxId: 5053]}
Length = 171
Score = 23.2 bits (50), Expect = 3.8
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 14 DFPFAIIGDENRDLAVKLDLLDEENKN 40
DFP A+ N + +K +
Sbjct: 51 DFPMAVFKSVNNPVTIKFTATSAQTGA 77
>d2h85a1 c.66.1.48 (A:1-190) Nsp15 {SARS coronavirus [TaxId:
227859]}
Length = 190
Score = 23.3 bits (50), Expect = 4.2
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 5 KNYCLDIKGDFPFAIIGDENRDLAVKLDLLDE---ENKNNLETAITV 48
K + G+ P +II + + K+D +D ENK L +
Sbjct: 12 KGHFDGHAGEAPVSIINNA---VYTKVDGIDVEIFENKTTLPVNVAF 55
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 22.6 bits (48), Expect = 7.0
Identities = 3/31 (9%), Positives = 8/31 (25%)
Query: 40 NNLETAITVRAVYIIGPDRKLKLSIVYPAST 70
+ E + ++ K +V
Sbjct: 90 DIAEMGANLCVERVLDCRTAFKPVLVDEGRK 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.139 0.390
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 265,811
Number of extensions: 9913
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 16
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)