BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13815
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen
pdb|1QRZ|B Chain B, Catalytic Domain Of Plasminogen
pdb|1QRZ|C Chain C, Catalytic Domain Of Plasminogen
pdb|1QRZ|D Chain D, Catalytic Domain Of Plasminogen
Length = 246
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 141/273 (51%), Gaps = 46/273 (16%)
Query: 115 GKIVGGLAANPGEFPWIVSLK-RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
G++VGG A+P +PW VSL+ R G HFCGGT+I +W++TAAHCL P P S I
Sbjct: 15 GRVVGGCVAHPHSWPWQVSLRTRFGQHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILG 74
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
+E +L P + + V R+ P+ DIALL+L+ +D + PACLPS +
Sbjct: 75 AHQEVNL-EPHVQEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLPSPNY 127
Query: 234 DYSEQS-VTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
++++ + GWG T G +L++ L V+ N+VC + G+ V+ +++
Sbjct: 128 MVADRTECFITGWGETQGTFGAG----LLKEAQLPVIENKVCNRYEFLNGR---VQSTEL 180
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAGH GG D+C Q DSGGPL+ + +
Sbjct: 181 CAGHLAGGTDSC------------------------------QGDSGGPLVCFEKDKYIL 210
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+ S G+GCARP PG+Y R++R++ WI L
Sbjct: 211 QGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVL 243
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
+ +L++ L V+ N+VC + G+ V+ +++CAGH GG D+C DSGGPL+
Sbjct: 149 AGLLKEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDSGGPLVCFEK 205
Query: 63 ESTQVIGLVSTGIG 76
+ + G+ S G+G
Sbjct: 206 DKYILQGVTSWGLG 219
>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex
pdb|3UIR|B Chain B, Crystal Structure Of The Plasmin-Textilinin-1 Complex
Length = 247
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 141/273 (51%), Gaps = 46/273 (16%)
Query: 115 GKIVGGLAANPGEFPWIVSLK-RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
G++VGG A+P +PW VSL+ R G HFCGGT+I +W++TAAHCL P P S I
Sbjct: 16 GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILG 75
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
+E +L P + + V R+ P+ DIALL+L+ +D + PACLPS +
Sbjct: 76 AHQEVNL-EPHVQEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLPSPNY 128
Query: 234 DYSEQS-VTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
++++ + GWG T G +L++ L V+ N+VC + G+ V+ +++
Sbjct: 129 VVADRTECFITGWGETQGTFGAG----LLKEAQLPVIENKVCNRYEFLNGR---VQSTEL 181
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAGH GG D+C Q DSGGPL+ + +
Sbjct: 182 CAGHLAGGTDSC------------------------------QGDSGGPLVCFEKDKYIL 211
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+ S G+GCARP PG+Y R++R++ WI +
Sbjct: 212 QGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
+ +L++ L V+ N+VC + G+ V+ +++CAGH GG D+C DSGGPL+
Sbjct: 150 AGLLKEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDSGGPLVCFEK 206
Query: 63 ESTQVIGLVSTGIG 76
+ + G+ S G+G
Sbjct: 207 DKYILQGVTSWGLG 220
>pdb|1BUI|A Chain A, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
pdb|1BUI|B Chain B, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
Length = 250
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 141/273 (51%), Gaps = 46/273 (16%)
Query: 115 GKIVGGLAANPGEFPWIVSLK-RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
G++VGG A+P +PW VSL+ R G HFCGGT+I +W++TAAHCL P P S I
Sbjct: 19 GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILG 78
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
+E +L P + + V R+ P+ DIALL+L+ +D + PACLPS +
Sbjct: 79 AHQEVNL-EPHVQEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLPSPNY 131
Query: 234 DYSEQS-VTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
++++ + GWG T G +L++ L V+ N+VC + G+ V+ +++
Sbjct: 132 VVADRTECFITGWGETQGTFGAG----LLKEAQLPVIENKVCNRYEFLNGR---VQSTEL 184
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAGH GG D+C Q DSGGPL+ + +
Sbjct: 185 CAGHLAGGTDSC------------------------------QGDSGGPLVCFEKDKYIL 214
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+ S G+GCARP PG+Y R++R++ WI +
Sbjct: 215 QGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 247
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
+ +L++ L V+ N+VC + G+ V+ +++CAGH GG D+C DSGGPL+
Sbjct: 153 AGLLKEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDSGGPLVCFEK 209
Query: 63 ESTQVIGLVSTGIG 76
+ + G+ S G+G
Sbjct: 210 DKYILQGVTSWGLG 223
>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUR|B Chain B, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUU|A Chain A, The X-Ray Crystal Structure Of Full-Length Type I Human
Plasminogen
pdb|4A5T|S Chain S, Structural Basis For The Conformational Modulation
Length = 791
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 141/273 (51%), Gaps = 46/273 (16%)
Query: 115 GKIVGGLAANPGEFPWIVSLK-RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
G++VGG A+P +PW VSL+ R G HFCGGT+I +W++TAAHCL P P S I
Sbjct: 560 GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILG 619
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
+E +L P + + V R+ P+ DIALL+L+ +D + PACLPS +
Sbjct: 620 AHQEVNL-EPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLPSPNY 672
Query: 234 DYSEQS-VTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
++++ + GWG T G +L++ L V+ N+VC + G+ V+ +++
Sbjct: 673 VVADRTECFITGWGETQGTFGAG----LLKEAQLPVIENKVCNRYEFLNGR---VQSTEL 725
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAGH GG D+C Q DSGGPL+ + +
Sbjct: 726 CAGHLAGGTDSC------------------------------QGDSGGPLVCFEKDKYIL 755
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+ S G+GCARP PG+Y R++R++ WI +
Sbjct: 756 QGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 788
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 5 ILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES 64
+L++ L V+ N+VC + G+ V+ +++CAGH GG D+C DSGGPL+ +
Sbjct: 696 LLKEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDK 752
Query: 65 TQVIGLVSTGIG 76
+ G+ S G+G
Sbjct: 753 YILQGVTSWGLG 764
>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
pdb|1BML|B Chain B, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
Length = 250
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 141/273 (51%), Gaps = 46/273 (16%)
Query: 115 GKIVGGLAANPGEFPWIVSLK-RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
G++VGG A+P +PW VSL+ R G HFCGGT+I +W++TAAHCL P P S I
Sbjct: 19 GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILG 78
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
+E +L P + + V R+ P+ DIALL+L+ +D + PACLPS +
Sbjct: 79 AHQEVNL-EPHVQEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLPSPNY 131
Query: 234 DYSEQS-VTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
++++ + GWG T G +L++ L V+ N+VC + G+ V+ +++
Sbjct: 132 VVADRTECFITGWGETQGTFGAG----LLKEAQLPVIENKVCNRYEFLNGR---VQSTEL 184
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAGH GG D+C Q D+GGPL+ + +
Sbjct: 185 CAGHLAGGTDSC------------------------------QGDAGGPLVCFEKDKYIL 214
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+ S G+GCARP PG+Y R++R++ WI +
Sbjct: 215 QGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 247
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
+ +L++ L V+ N+VC + G+ V+ +++CAGH GG D+C D+GGPL+
Sbjct: 153 AGLLKEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDAGGPLVCFEK 209
Query: 63 ESTQVIGLVSTGIG 76
+ + G+ S G+G
Sbjct: 210 DKYILQGVTSWGLG 223
>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|B Chain B, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|C Chain C, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|D Chain D, Crystal Structure Of Human Plasminogen Catalytic Domain
Length = 247
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 141/273 (51%), Gaps = 46/273 (16%)
Query: 115 GKIVGGLAANPGEFPWIVSLK-RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
G++VGG A+P +PW VSL+ R G HFCGGT+I +W++TAAHCL P P S I
Sbjct: 16 GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILG 75
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
+E +L P + + V R+ P+ DIALL+L+ +D + PACLPS +
Sbjct: 76 AHQEVNL-EPHVQEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLPSPNY 128
Query: 234 DYSEQS-VTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
++++ + GWG T G +L++ L V+ N+VC + G+ V+ +++
Sbjct: 129 VVADRTECFITGWGETQGTFGAG----LLKEAQLPVIENKVCNRYEFLNGR---VQSTEL 181
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAGH GG D+C Q D+GGPL+ + +
Sbjct: 182 CAGHLAGGTDSC------------------------------QGDAGGPLVCFEKDKYIL 211
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+ S G+GCARP PG+Y R++R++ WI +
Sbjct: 212 QGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
+ +L++ L V+ N+VC + G+ V+ +++CAGH GG D+C D+GGPL+
Sbjct: 150 AGLLKEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDAGGPLVCFEK 206
Query: 63 ESTQVIGLVSTGIG 76
+ + G+ S G+G
Sbjct: 207 DKYILQGVTSWGLG 220
>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha
Domain Complex
Length = 249
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 141/273 (51%), Gaps = 46/273 (16%)
Query: 115 GKIVGGLAANPGEFPWIVSLK-RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
G++VGG A+P +PW VSL+ R G HFCGGT+I +W++TAAHCL P P S I
Sbjct: 18 GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILG 77
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
+E +L P + + V R+ P+ DIALL+L+ +D + PACLPS +
Sbjct: 78 AHQEVNL-EPHVQEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLPSPNY 130
Query: 234 DYSEQS-VTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
++++ + GWG T G +L++ L V+ N+VC + G+ V+ +++
Sbjct: 131 VVADRTECFITGWGETQGTFGAG----LLKEAQLPVIENKVCNRYEFLNGR---VQSTEL 183
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAGH GG D+C Q D+GGPL+ + +
Sbjct: 184 CAGHLAGGTDSC------------------------------QGDAGGPLVCFEKDKYIL 213
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+ S G+GCARP PG+Y R++R++ WI +
Sbjct: 214 QGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 246
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
+ +L++ L V+ N+VC + G+ V+ +++CAGH GG D+C D+GGPL+
Sbjct: 152 AGLLKEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDAGGPLVCFEK 208
Query: 63 ESTQVIGLVSTGIG 76
+ + G+ S G+G
Sbjct: 209 DKYILQGVTSWGLG 222
>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen
With Alpha Domain Of Streptokinase In The Presence
Cadmium Ions
Length = 248
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 141/273 (51%), Gaps = 46/273 (16%)
Query: 115 GKIVGGLAANPGEFPWIVSLK-RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
G++VGG A+P +PW VSL+ R G HFCGGT+I +W++TAAHCL P P S I
Sbjct: 17 GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILG 76
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
+E +L P + + V R+ P+ DIALL+L+ +D + PACLPS +
Sbjct: 77 AHQEVNL-EPHVQEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLPSPNY 129
Query: 234 DYSEQS-VTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
++++ + GWG T G +L++ L V+ N+VC + G+ V+ +++
Sbjct: 130 VVADRTECFITGWGETQGTFGAG----LLKEAQLPVIENKVCNRYEFLNGR---VQSTEL 182
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAGH GG D+C Q D+GGPL+ + +
Sbjct: 183 CAGHLAGGTDSC------------------------------QGDAGGPLVCFEKDKYIL 212
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+ S G+GCARP PG+Y R++R++ WI +
Sbjct: 213 QGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 245
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
+ +L++ L V+ N+VC + G+ V+ +++CAGH GG D+C D+GGPL+
Sbjct: 151 AGLLKEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDAGGPLVCFEK 207
Query: 63 ESTQVIGLVSTGIG 76
+ + G+ S G+G
Sbjct: 208 DKYILQGVTSWGLG 221
>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant
Length = 247
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 138/273 (50%), Gaps = 46/273 (16%)
Query: 115 GKIVGGLAANPGEFPWIVSLK-RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
G +VGG A P +PW VSL+ R G HFCGGT+I +W++TAAHCL P P S I
Sbjct: 16 GAVVGGCVAYPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILG 75
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
+E +L P + + V R+ P+ DIALL+L+ +D + PACLPS +
Sbjct: 76 AHQEVNL-EPHVQEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLPSPNY 128
Query: 234 DYSEQS-VTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
++++ + GWG T G +L + L V+ N+VC + G+ V+ +++
Sbjct: 129 VVADRTECFITGWGETQGTFGAG----LLMEAQLPVIENKVCNRYEFLNGR---VQSTEL 181
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAGH GG D+C Q DSGGPL+ + +
Sbjct: 182 CAGHLAGGTDSC------------------------------QGDSGGPLVCFEKDKYIL 211
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+ S G+GCARP PG+Y R++R++ WI +
Sbjct: 212 QGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
+ +L + L V+ N+VC + G+ V+ +++CAGH GG D+C DSGGPL+
Sbjct: 150 AGLLMEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDSGGPLVCFEK 206
Query: 63 ESTQVIGLVSTGIG 76
+ + G+ S G+G
Sbjct: 207 DKYILQGVTSWGLG 220
>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed
With A Peptide Inhibitor, Sgti
Length = 237
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 138/271 (50%), Gaps = 45/271 (16%)
Query: 117 IVGGLAANPGEFPWIVSLKR----HGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQIN 172
IVGG A GEFP+ +S + HFCG +I +E + +TA HC+ G + S +
Sbjct: 1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVY-GDDYENPSGLQ 59
Query: 173 VTLKEHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS 230
+ E D+S S + V +I+ H + + +NDI+LL+L+ S+ ++D + P LP
Sbjct: 60 IVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPE 119
Query: 231 GSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKES 290
+ V V GWG T+E G ++LQKV + +VS++ C+A Y ++ + +S
Sbjct: 120 QG-HTATGDVIVTGWGTTSEG---GNTPDVLQKVTVPLVSDEDCRADYGAD----EILDS 171
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
+CAG +GGKD+C Q DSGGPL ST
Sbjct: 172 MICAGVPEGGKDSC------------------------------QGDSGGPLAASDTGST 201
Query: 351 QVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+ G+VS G GCARP PG+YT ++ ++ WI
Sbjct: 202 YLAGIVSWGYGCARPGYPGVYTEVSYHVDWI 232
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++LQKV + +VS++ C+A Y ++ + +S +CAG +GGKD+C DSGGPL
Sbjct: 144 DVLQKVTVPLVSDEDCRADYGAD----EILDSMICAGVPEGGKDSCQGDSGGPLAASDTG 199
Query: 64 STQVIGLVSTGIG 76
ST + G+VS G G
Sbjct: 200 STYLAGIVSWGYG 212
>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 137 bits (346), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 139/269 (51%), Gaps = 42/269 (15%)
Query: 117 IVGGLAANPGEFPWIVSLKRH---GGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG ++ GE+PW VSL+ H CGG++I QW++TAAHC P +
Sbjct: 1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG 60
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS-GS 232
L+ D+++ + + + I+ H ++ S N+DIAL++L +++++ +P LPS G
Sbjct: 61 ILELSDITKDTPFS-QIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGD 119
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
+ V GWG++ E +G NILQKV + +V+N+ CQ YQ + + +
Sbjct: 120 TSTIYTNCWVTGWGFSKE---KGEIQNILQKVNIPLVTNEECQKRYQD----YKITQRMV 172
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG+++GGKDAC + DSGGPL+ ++
Sbjct: 173 CAGYKEGGKDAC------------------------------KGDSGGPLVCKHNGMWRL 202
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+G+ S G GCAR PG+YT++ Y+ WI
Sbjct: 203 VGITSWGEGCARREQPGVYTKVAEYMDWI 231
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
NILQKV + +V+N+ CQ YQ + + +CAG+++GGKDAC DSGGPL+
Sbjct: 143 NILQKVNIPLVTNEECQKRYQD----YKITQRMVCAGYKEGGKDACKGDSGGPLVCKHNG 198
Query: 64 STQVIGLVSTGIG 76
+++G+ S G G
Sbjct: 199 MWRLVGITSWGEG 211
>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
pdb|1XX9|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
Length = 238
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 130/269 (48%), Gaps = 42/269 (15%)
Query: 117 IVGGLAANPGEFPWIVSLKRHG---GHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG A+ GE+PW V+L H CGG+II QWI+TAAHC SP +
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS-GS 232
L + ++ + S V I+ H + + DIALL+L ++ ++D RP CLPS G
Sbjct: 61 ILNQSEI-KEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGD 119
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
+ V GWG+ + + N LQK + +V+N+ CQ Y+ G KI K +
Sbjct: 120 RNVIYTDCWVTGWGY---RKLRDKIQNTLQKAKIPLVTNEECQKRYR--GHKITHK--MI 172
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG+ +GGKDAC + DSGGPL E +
Sbjct: 173 CAGYREGGKDAC------------------------------KGDSGGPLSCKHNEVWHL 202
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+G+ S G GCA+ PG+YT + Y+ WI
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
N LQK + +V+N+ CQ Y+ G KI K +CAG+ +GGKDAC DSGGPL E
Sbjct: 143 NTLQKAKIPLVTNEECQKRYR--GHKITHK--MICAGYREGGKDACKGDSGGPLSCKHNE 198
Query: 64 STQVIGLVSTGIG 76
++G+ S G G
Sbjct: 199 VWHLVGITSWGEG 211
>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Coagulation Factor Xia In Complex With Benzamidine
(s434a- T475a-k437 Mutant)
Length = 238
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 131/269 (48%), Gaps = 42/269 (15%)
Query: 117 IVGGLAANPGEFPWIVSLKRHG---GHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG A+ GE+PW V+L H CGG+II QWI+TAAHC SP +
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS-GS 232
L + +++ + S V I+ H + + DIALL+L ++ ++D RP CLPS G
Sbjct: 61 ILNQAEIAEDT-SFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGD 119
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
+ V GWG+ + + N LQK + +V+N+ CQ Y+ G KI K +
Sbjct: 120 RNVIYTDCWVTGWGY---RKLRDKIQNTLQKAKIPLVTNEECQKRYR--GHKITHK--MI 172
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG+ +GGKDAC + DSGGPL E +
Sbjct: 173 CAGYREGGKDAC------------------------------KGDSGGPLSCKHNEVWHL 202
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+G+ S G GCA+ PG+YT + Y+ WI
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
N LQK + +V+N+ CQ Y+ G KI K +CAG+ +GGKDAC DSGGPL E
Sbjct: 143 NTLQKAKIPLVTNEECQKRYR--GHKITHK--MICAGYREGGKDACKGDSGGPLSCKHNE 198
Query: 64 STQVIGLVSTGIG 76
++G+ S G G
Sbjct: 199 VWHLVGITSWGEG 211
>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXD|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXF|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
pdb|1XXF|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
Length = 238
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 130/269 (48%), Gaps = 42/269 (15%)
Query: 117 IVGGLAANPGEFPWIVSLKRHG---GHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG A+ GE+PW V+L H CGG+II QWI+TAAHC SP +
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS-GS 232
L + ++ + S V I+ H + + DIALL+L ++ ++D RP CLPS G
Sbjct: 61 ILNQAEI-KEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGD 119
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
+ V GWG+ + + N LQK + +V+N+ CQ Y+ G KI K +
Sbjct: 120 RNVIYTDCWVTGWGY---RKLRDKIQNTLQKAKIPLVTNEECQKRYR--GHKITHK--MI 172
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG+ +GGKDAC + DSGGPL E +
Sbjct: 173 CAGYREGGKDAC------------------------------KGDSGGPLSCKHNEVWHL 202
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+G+ S G GCA+ PG+YT + Y+ WI
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
N LQK + +V+N+ CQ Y+ G KI K +CAG+ +GGKDAC DSGGPL E
Sbjct: 143 NTLQKAKIPLVTNEECQKRYR--GHKITHK--MICAGYREGGKDACKGDSGGPLSCKHNE 198
Query: 64 STQVIGLVSTGIG 76
++G+ S G G
Sbjct: 199 VWHLVGITSWGEG 211
>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine (S434a-T475a-K505
Mutant)
Length = 238
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 130/269 (48%), Gaps = 42/269 (15%)
Query: 117 IVGGLAANPGEFPWIVSLKRHG---GHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG A+ GE+PW V+L H CGG+II QWI+TAAHC SP +
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS-GS 232
L + ++ + S V I+ H + + DIALL+L ++ ++D RP CLPS G
Sbjct: 61 ILNQAEI-KEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGD 119
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
+ V GWG+ + + N LQK + +V+N+ CQ Y+ G KI K +
Sbjct: 120 RNVIYTDCWVTGWGY---RALRDKIQNTLQKAKIPLVTNEECQKRYR--GHKITHK--MI 172
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG+ +GGKDAC + DSGGPL E +
Sbjct: 173 CAGYREGGKDAC------------------------------KGDSGGPLSCKHNEVWHL 202
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+G+ S G GCA+ PG+YT + Y+ WI
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
N LQK + +V+N+ CQ Y+ G KI K +CAG+ +GGKDAC DSGGPL E
Sbjct: 143 NTLQKAKIPLVTNEECQKRYR--GHKITHK--MICAGYREGGKDACKGDSGGPLSCKHNE 198
Query: 64 STQVIGLVSTGIG 76
++G+ S G G
Sbjct: 199 VWHLVGITSWGEG 211
>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 137/269 (50%), Gaps = 42/269 (15%)
Query: 117 IVGGLAANPGEFPWIVSLKRH---GGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG ++ GE+PW VSL+ H CGG++I QW++TAAHC P +
Sbjct: 1 IVGGTNSSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG 60
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS-GS 232
L D+++ + + + I+ H ++ S N+DIAL++L + +++ +P LPS G
Sbjct: 61 ILNLSDITKDTPFS-QIKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPISLPSKGD 119
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
+ V GWG++ E +G NILQKV + +V+N+ CQ YQ + + +
Sbjct: 120 TSTIYTNCWVTGWGFSKE---KGEIQNILQKVNIPLVTNEECQKRYQD----YKITQRMV 172
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG+++GGKDAC + DSGGPL+ ++
Sbjct: 173 CAGYKEGGKDAC------------------------------KGDSGGPLVCKHNGMWRL 202
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+G+ S G GCAR PG+YT++ Y+ WI
Sbjct: 203 VGITSWGEGCARREQPGVYTKVAEYMDWI 231
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
NILQKV + +V+N+ CQ YQ + + +CAG+++GGKDAC DSGGPL+
Sbjct: 143 NILQKVNIPLVTNEECQKRYQD----YKITQRMVCAGYKEGGKDACKGDSGGPLVCKHNG 198
Query: 64 STQVIGLVSTGIG 76
+++G+ S G G
Sbjct: 199 MWRLVGITSWGEG 211
>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human
Plasma Coagulation Factor Xi Zymogen
Length = 625
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 131/270 (48%), Gaps = 42/270 (15%)
Query: 116 KIVGGLAANPGEFPWIVSLKRHG---GHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQIN 172
+IVGG A+ GE+PW V+L H CGG+II QWI+TAAHC SP +
Sbjct: 387 RIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYS 446
Query: 173 VTLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS-G 231
L + ++ + S V I+ H + + DIALL+L ++ ++D RP CLPS G
Sbjct: 447 GILNQSEI-KEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKG 505
Query: 232 SLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQ 291
+ V GWG+ + + N LQK + +V+N+ CQ Y+ G KI K
Sbjct: 506 DRNVIYTDCWVTGWGY---RKLRDKIQNTLQKAKIPLVTNEECQKRYR--GHKITHK--M 558
Query: 292 MCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQ 351
+CAG+ +GGKDAC + DSGGPL E
Sbjct: 559 ICAGYREGGKDAC------------------------------KGDSGGPLSCKHNEVWH 588
Query: 352 VIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
++G+ S G GCA+ PG+YT + Y+ WI
Sbjct: 589 LVGITSWGEGCAQRERPGVYTNVVEYVDWI 618
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
N LQK + +V+N+ CQ Y+ G KI K +CAG+ +GGKDAC DSGGPL E
Sbjct: 530 NTLQKAKIPLVTNEECQKRYR--GHKITHK--MICAGYREGGKDACKGDSGGPLSCKHNE 585
Query: 64 STQVIGLVSTGIG 76
++G+ S G G
Sbjct: 586 VWHLVGITSWGEG 598
>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To
Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane
Length = 235
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 133/273 (48%), Gaps = 43/273 (15%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG + G +PW+V+L CG +++ W+V+AAHC+ + S+ L
Sbjct: 1 IVGGSDSREGAWPWVVALYFDDQQVCGASLVSRDWLVSAAHCVYG--RNMEPSKWKAVLG 58
Query: 177 EH---DLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
H +L+ P I T + +I+ +P ++ NNDIA++ L + ++D I+P CLP +
Sbjct: 59 LHMASNLTSPQIETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQ 118
Query: 234 DYSEQSV-TVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
+ + ++AGWG QG +++LQ+ + ++SN+ C Q + + N+ E+ +
Sbjct: 119 VFPPGRICSIAGWGAL---IYQGSTADVLQEADVPLLSNEKC----QQQMPEYNITENMV 171
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG+E GG D+C Q DSGGPLM +
Sbjct: 172 CAGYEAGGVDSC------------------------------QGDSGGPLMCQENNRWLL 201
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+ S G CA P PG+Y R+ R+ WI L
Sbjct: 202 AGVTSFGYQCALPNRPGVYARVPRFTEWIQSFL 234
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
+++LQ+ + ++SN+ CQ + + N+ E+ +CAG+E GG D+C DSGGPLM
Sbjct: 141 ADVLQEADVPLLSNEKCQ----QQMPEYNITENMVCAGYEAGGVDSCQGDSGGPLMCQEN 196
Query: 63 ESTQVIGLVSTG 74
+ G+ S G
Sbjct: 197 NRWLLAGVTSFG 208
>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With
Clavatadine A
Length = 238
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 129/269 (47%), Gaps = 42/269 (15%)
Query: 117 IVGGLAANPGEFPWIVSLKRHG---GHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG A+ GE+PW V+L H CGG+II QWI+TAAHC SP +
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS-GS 232
L + ++ + S V I+ H + + DIALL+L ++ ++D RP LPS G
Sbjct: 61 ILNQSEI-KEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGE 119
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
+ V GWG+ + + N LQK + +V+N+ CQ Y+ G KI K +
Sbjct: 120 RNVIYTDCWVTGWGY---RKLRDKIQNTLQKAKIPLVTNEECQKRYR--GHKITHK--MI 172
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG+ +GGKDAC + DSGGPL E +
Sbjct: 173 CAGYREGGKDAC------------------------------KGDSGGPLSCKHNEVWHL 202
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+G+ S G GCA+ PG+YT + Y+ WI
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
N LQK + +V+N+ CQ Y+ G KI K +CAG+ +GGKDAC DSGGPL E
Sbjct: 143 NTLQKAKIPLVTNEECQKRYR--GHKITHK--MICAGYREGGKDACKGDSGGPLSCKHNE 198
Query: 64 STQVIGLVSTGIG 76
++G+ S G G
Sbjct: 199 VWHLVGITSWGEG 211
>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4-
Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole
pdb|1ZRK|A Chain A, Factor Xi Complexed With 3-Hydroxypropyl 3-(7-
Amidinonaphthalene-1-Carboxamido)benzenesulfonate
pdb|1ZSL|A Chain A, Factor Xi Complexed With A Pyrimidinone Inhibitor
Length = 238
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 130/269 (48%), Gaps = 42/269 (15%)
Query: 117 IVGGLAANPGEFPWIVSLKRHG---GHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG A+ GE+PW V+L H CGG+II QWI+TAAHC SP +
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS-GS 232
L + +++ + S V I+ H + + DIALL+L ++ ++D RP LPS G
Sbjct: 61 ILNQSEIAEDT-SFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGD 119
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
+ V GWG+ + + N LQK + +V+N+ CQ Y+ G KI K +
Sbjct: 120 RNVIYTDCWVTGWGY---RKLRDKIQNTLQKAKIPLVTNEECQKRYR--GHKITHK--MI 172
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG+ +GGKDAC + DSGGPL E +
Sbjct: 173 CAGYREGGKDAC------------------------------KGDSGGPLSCKHNEVWHL 202
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+G+ S G GCA+ PG+YT + Y+ WI
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
N LQK + +V+N+ CQ Y+ G KI K +CAG+ +GGKDAC DSGGPL E
Sbjct: 143 NTLQKAKIPLVTNEECQKRYR--GHKITHK--MICAGYREGGKDACKGDSGGPLSCKHNE 198
Query: 64 STQVIGLVSTGIG 76
++G+ S G G
Sbjct: 199 VWHLVGITSWGEG 211
>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With
2-Guanidino-1-(4-(4,4,5,5-
Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl
Nicotinate
Length = 237
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 130/269 (48%), Gaps = 42/269 (15%)
Query: 117 IVGGLAANPGEFPWIVSLKRHG---GHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG A+ GE+PW V+L H CGG+II QWI+TAAHC SP +
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS-GS 232
L + +++ + S V I+ H + + DIALL+L ++ ++D RP LPS G
Sbjct: 61 ILNQAEIAEDT-SFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGD 119
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
+ V GWG+ + + N LQK + +V+N+ CQ Y+ G KI K +
Sbjct: 120 RNVIYTDCWVTGWGY---RKLRDKIQNTLQKAKIPLVTNEECQKRYR--GHKITHK--MI 172
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG+ +GGKDAC + DSGGPL E +
Sbjct: 173 CAGYREGGKDAC------------------------------KGDSGGPLSCKHNEVWHL 202
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+G+ S G GCA+ PG+YT + Y+ WI
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
N LQK + +V+N+ CQ Y+ G KI K +CAG+ +GGKDAC DSGGPL E
Sbjct: 143 NTLQKAKIPLVTNEECQKRYR--GHKITHK--MICAGYREGGKDACKGDSGGPLSCKHNE 198
Query: 64 STQVIGLVSTGIG 76
++G+ S G G
Sbjct: 199 VWHLVGITSWGEG 211
>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole
Inhibitor
pdb|3SOS|A Chain A, Benzothiazinone Inhibitor In Complex With Fxia
Length = 238
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 129/269 (47%), Gaps = 42/269 (15%)
Query: 117 IVGGLAANPGEFPWIVSLKRHG---GHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG A+ GE+PW V+L H CGG+II QWI+TAAHC SP +
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS-GS 232
L + ++ + S V I+ H + + DIALL+L ++ ++D RP LPS G
Sbjct: 61 ILNQSEI-KEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGD 119
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
+ V GWG+ + + N LQK + +V+N+ CQ Y+ G KI K +
Sbjct: 120 RNVIYTDCWVTGWGY---RKLRDKIQNTLQKAKIPLVTNEECQKRYR--GHKITHK--MI 172
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG+ +GGKDAC + DSGGPL E +
Sbjct: 173 CAGYREGGKDAC------------------------------KGDSGGPLSCKHNEVWHL 202
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+G+ S G GCA+ PG+YT + Y+ WI
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
N LQK + +V+N+ CQ Y+ G KI K +CAG+ +GGKDAC DSGGPL E
Sbjct: 143 NTLQKAKIPLVTNEECQKRYR--GHKITHK--MICAGYREGGKDACKGDSGGPLSCKHNE 198
Query: 64 STQVIGLVSTGIG 76
++G+ S G G
Sbjct: 199 VWHLVGITSWGEG 211
>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Kunitz Protease Inhibitor
Domain Of Protease Nexin Ii
Length = 237
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 129/269 (47%), Gaps = 42/269 (15%)
Query: 117 IVGGLAANPGEFPWIVSLKRHG---GHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG A+ GE+PW V+L H CGG+II QWI+TAAHC SP +
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS-GS 232
L + ++ + S V I+ H + + DIALL+L ++ ++D RP LPS G
Sbjct: 61 ILNQAEI-KEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGD 119
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
+ V GWG+ + + N LQK + +V+N+ CQ Y+ G KI K +
Sbjct: 120 RNVIYTDCWVTGWGY---RKLRDKIQNTLQKAKIPLVTNEECQKRYR--GHKITHK--MI 172
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG+ +GGKDAC + DSGGPL E +
Sbjct: 173 CAGYREGGKDAC------------------------------KGDSGGPLSCKHNEVWHL 202
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+G+ S G GCA+ PG+YT + Y+ WI
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
N LQK + +V+N+ CQ Y+ G KI K +CAG+ +GGKDAC DSGGPL E
Sbjct: 143 NTLQKAKIPLVTNEECQKRYR--GHKITHK--MICAGYREGGKDACKGDSGGPLSCKHNE 198
Query: 64 STQVIGLVSTGIG 76
++G+ S G G
Sbjct: 199 VWHLVGITSWGEG 211
>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine
(S434a-T475a-C482s-K437a Mutant)
pdb|1ZPB|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 4-Methyl-Pentanoic Acid {1-[4-
Guanidino-1-(Thiazole-2-Carbonyl)-Butylcarbamoyl]-2-
Methyl- Propyl}-Amide
pdb|1ZPC|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
2-[2-(3-Chloro-Phenyl)-2-Hydroxy-
Acetylamino]-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]- 3-Methyl-Butyramide
pdb|2FDA|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Coagulation Factor Xia In Complex With
Alpha-Ketothiazole Arginine Derived Ligand
pdb|1ZMJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With 4-(Guanidinomethyl)-Phenylboronic Acid
pdb|1ZML|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With (R)-1-(4-(4-(Hydroxymethyl)-1,3,2-
Dioxaborolan-2-Yl)phenethyl)guanidine
pdb|1ZMN|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
(R)-1-(4-(4-(Hydroxymethyl)-1,3,
2-Dioxaborolan-2-Yl)phenyl)guanidine
pdb|1ZOM|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With A Peptidomimetic Inhibitor
pdb|1ZSJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
N-(7-Carbamimidoyl-Naphthalen-1-
Yl)-3-Hydroxy-2-Methyl-Benzamide
pdb|1ZSK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
6-Carbamimidoyl-4-(3-Hydroxy-2-
Methyl-Benzoylamino)-Naphthalene-2-Carboxylic Acid
Methyl Ester
pdb|1ZTJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Benzylamino-2-
Methylsulfanyl-6-Oxo-6h-Pyrimidin-1-Yl)-N-[4-Guanidino-
1- (Thiazole-2-Carbonyl)-Butyl]-Acetamide
pdb|1ZTK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Amino-6-Oxo-2-M-Tolyl-6h-
Pyrimidin-1-Yl)-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]-Acetamide
pdb|1ZTL|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With N-[4-Guanidino-1-(Thiazole-2-
Carbonyl)-Butyl]-2-{6-Oxo-5-[(Quinolin-8-Ylmethyl)-
Amino]- 2-M-Tolyl-6h-Pyrimidin-1-Yl}-Acetamide
Length = 238
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 130/269 (48%), Gaps = 42/269 (15%)
Query: 117 IVGGLAANPGEFPWIVSLKRHG---GHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG A+ GE+PW V+L H CGG+II QWI+TAAHC SP +
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS-GS 232
L + +++ + S V I+ H + + DIALL+L ++ ++D RP LPS G
Sbjct: 61 ILNQAEIAEDT-SFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGD 119
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
+ V GWG+ + + N LQK + +V+N+ CQ Y+ G KI K +
Sbjct: 120 RNVIYTDCWVTGWGY---RKLRDKIQNTLQKAKIPLVTNEECQKRYR--GHKITHK--MI 172
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG+ +GGKDAC + DSGGPL E +
Sbjct: 173 CAGYREGGKDAC------------------------------KGDSGGPLSCKHNEVWHL 202
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+G+ S G GCA+ PG+YT + Y+ WI
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
N LQK + +V+N+ CQ Y+ G KI K +CAG+ +GGKDAC DSGGPL E
Sbjct: 143 NTLQKAKIPLVTNEECQKRYR--GHKITHK--MICAGYREGGKDACKGDSGGPLSCKHNE 198
Query: 64 STQVIGLVSTGIG 76
++G+ S G G
Sbjct: 199 VWHLVGITSWGEG 211
>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|B Chain B, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|C Chain C, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|D Chain D, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
Length = 244
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 132/273 (48%), Gaps = 44/273 (16%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGG---HFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG A ++PW VSL+ HG HFCGG++IH QW++TAAHC+ GP + + V
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCV--GPDVKDLAALRV 58
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
L+E L +PV RI+ HP + DIALLEL ++ S + LP S
Sbjct: 59 QLREQHLYYQD-QLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASE 117
Query: 234 DYSE-QSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQ---SEGKKIN-VK 288
+ V GWG +N + L++V + ++ N +C A Y G + V+
Sbjct: 118 TFPPGMPCWVTGWG-DVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVR 176
Query: 289 ESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAE 348
+ +CAG+ + +D+C Q DSGGPL+
Sbjct: 177 DDMLCAGNTR--RDSC------------------------------QGDSGGPLVCKVNG 204
Query: 349 STQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+ G+VS G GCA+P PG+YTR+T Y+ WI
Sbjct: 205 TWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 6 LQKVALSVVSNQVCQAWYQ---SEGKKIN-VKESQMCAGHEQGGKDACWADSGGPLMLLG 61
L++V + ++ N +C A Y G + V++ +CAG+ + +D+C DSGGPL+
Sbjct: 145 LKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGNTR--RDSCQGDSGGPLVCKV 202
Query: 62 AESTQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 203 NGTWLQAGVVSWGEG 217
>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|B Chain B, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|C Chain C, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|D Chain D, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2FWW|A Chain A, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|B Chain B, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|C Chain C, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|D Chain D, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FXR|A Chain A, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|B Chain B, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|C Chain C, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|D Chain D, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FPZ|A Chain A, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|B Chain B, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|C Chain C, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|D Chain D, Human Tryptase With 2-Amino Benzimidazole
pdb|2FS8|A Chain A, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|B Chain B, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|C Chain C, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|D Chain D, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS9|A Chain A, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|B Chain B, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|C Chain C, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|D Chain D, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2GDD|A Chain A, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|B Chain B, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|C Chain C, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|D Chain D, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2ZA5|A Chain A, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|B Chain B, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|C Chain C, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|D Chain D, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|4A6L|A Chain A, Beta-Tryptase Inhibitor
pdb|4A6L|B Chain B, Beta-Tryptase Inhibitor
pdb|4A6L|C Chain C, Beta-Tryptase Inhibitor
pdb|4A6L|D Chain D, Beta-Tryptase Inhibitor
pdb|3V7T|A Chain A, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|B Chain B, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|C Chain C, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|D Chain D, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
Length = 245
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 132/273 (48%), Gaps = 44/273 (16%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGG---HFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG A ++PW VSL+ HG HFCGG++IH QW++TAAHC+ GP + + V
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCV--GPDVKDLAALRV 58
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
L+E L +PV RI+ HP + DIALLEL ++ S + LP S
Sbjct: 59 QLREQHLYYQD-QLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASE 117
Query: 234 DYSE-QSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQ---SEGKKIN-VK 288
+ V GWG +N + L++V + ++ N +C A Y G + V+
Sbjct: 118 TFPPGMPCWVTGWG-DVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVR 176
Query: 289 ESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAE 348
+ +CAG+ + +D+C Q DSGGPL+
Sbjct: 177 DDMLCAGNTR--RDSC------------------------------QGDSGGPLVCKVNG 204
Query: 349 STQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+ G+VS G GCA+P PG+YTR+T Y+ WI
Sbjct: 205 TWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 6 LQKVALSVVSNQVCQAWYQ---SEGKKIN-VKESQMCAGHEQGGKDACWADSGGPLMLLG 61
L++V + ++ N +C A Y G + V++ +CAG+ + +D+C DSGGPL+
Sbjct: 145 LKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGNTR--RDSCQGDSGGPLVCKV 202
Query: 62 AESTQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 203 NGTWLQAGVVSWGEG 217
>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
Length = 243
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 132/273 (48%), Gaps = 44/273 (16%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGG---HFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG A ++PW VSL+ HG HFCGG++IH QW++TAAHC+ GP + + V
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCV--GPDVKDLAALRV 58
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
L+E L +PV RI+ HP + DIALLEL ++ S + LP S
Sbjct: 59 QLREQHLYYQD-QLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASE 117
Query: 234 DYSE-QSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQ---SEGKKIN-VK 288
+ V GWG +N + L++V + ++ N +C A Y G + V+
Sbjct: 118 TFPPGMPCWVTGWG-DVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVR 176
Query: 289 ESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAE 348
+ +CAG+ + +D+C Q DSGGPL+
Sbjct: 177 DDMLCAGNTR--RDSC------------------------------QGDSGGPLVCKVNG 204
Query: 349 STQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+ G+VS G GCA+P PG+YTR+T Y+ WI
Sbjct: 205 TWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 6 LQKVALSVVSNQVCQAWYQ---SEGKKIN-VKESQMCAGHEQGGKDACWADSGGPLMLLG 61
L++V + ++ N +C A Y G + V++ +CAG+ + +D+C DSGGPL+
Sbjct: 145 LKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGNTR--RDSCQGDSGGPLVCKV 202
Query: 62 AESTQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 203 NGTWLQAGVVSWGEG 217
>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAW|C Chain C, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAX|A Chain A, Crystal Structure Of Mtsp1 (Matriptase)
pdb|2GV6|A Chain A, Crystal Structure Of Matriptase With Inhibitor Cj-730
pdb|2GV7|A Chain A, Structure Of Matriptase In Complex With Inhibitor Cj-672
Length = 241
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 133/279 (47%), Gaps = 46/279 (16%)
Query: 117 IVGGLAANPGEFPWIVSLKRHG-GHFCGGTIIHEQWIVTAAHCLCN--GPSPLSASQINV 173
+VGG A+ GE+PW VSL G GH CG ++I W+V+AAHC + G +Q
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 174 TLKEHDLSR---PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS 230
L HD S+ P + + RI+ HP + +F+ DIALLEL + ++S ++RP CLP
Sbjct: 61 FLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPD 120
Query: 231 GSLDY-SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKE 289
S + + +++ V GWG T G + ILQK + V++ C+ + +
Sbjct: 121 ASHVFPAGKAIWVTGWGHTQYG---GTGALILQKGEIRVINQTTCENLLPQQ-----ITP 172
Query: 290 SQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAES 349
MC G GG D+C Q DSGGPL + A+
Sbjct: 173 RMMCVGFLSGGVDSC------------------------------QGDSGGPLSSVEADG 202
Query: 350 TQV-IGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLDI 387
G+VS G GCA+ PG+YTRL + WI + +
Sbjct: 203 RIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENTGV 241
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 5 ILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES 64
ILQK + V++ C+ + + MC G GG D+C DSGGPL + A+
Sbjct: 148 ILQKGEIRVINQTTCENLLPQQ-----ITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADG 202
Query: 65 TQV-IGLVSTGIG 76
G+VS G G
Sbjct: 203 RIFQAGVVSWGDG 215
>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component B: A Novel, Glycosylated Two-chained Trypsin
Length = 238
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 141/280 (50%), Gaps = 56/280 (20%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGG--HFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVT 174
IVGG+ A P EFPW VS++R HFCGG+II+++W+V AAHC+ G +P + +++
Sbjct: 1 IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCM-QGEAP---ALVSLV 56
Query: 175 LKEHDLSRPSI--STVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGS 232
+ EHD S S T V I + ++ ++ ND+++++ +I + + P C P +
Sbjct: 57 VGEHDSSAASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDPA 116
Query: 233 LDYSEQSVTVAGWGWTNEN----PSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVK 288
DY + +GWG N P+ +L+ V L++ +N C A Y S+ +
Sbjct: 117 NDYVYRKSQCSGWGTINSGGVCCPA------VLRYVTLNITTNAFCDAVYTSD----TIY 166
Query: 289 ESQMCAGHEQG--GKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLL- 345
+ +CA G +D+C Q DSGGPL +
Sbjct: 167 DDMICATDNTGMTDRDSC------------------------------QGDSGGPLSVKD 196
Query: 346 GAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+ ++G+VS GIGCA PG+Y+R+ + GWI+DT+
Sbjct: 197 GSGIFSLVGIVSWGIGCAS-GYPGVYSRVGFHAGWITDTI 235
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 5 ILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQG--GKDACWADSGGPLMLL-G 61
+L+ V L++ +N C A Y S+ + + +CA G +D+C DSGGPL + G
Sbjct: 142 VLRYVTLNITTNAFCDAVYTSD----TIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDG 197
Query: 62 AESTQVIGLVSTGIGSPTSVVQLLTR 87
+ ++G+VS GIG + + +R
Sbjct: 198 SGIFSLVGIVSWGIGCASGYPGVYSR 223
>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine
pdb|3P8F|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Sfti-1
Length = 241
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 132/279 (47%), Gaps = 46/279 (16%)
Query: 117 IVGGLAANPGEFPWIVSLKRHG-GHFCGGTIIHEQWIVTAAHCLCN--GPSPLSASQINV 173
+VGG A+ GE+PW VSL G GH CG ++I W+V+AAHC + G +Q
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 174 TLKEHDLSR---PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS 230
L HD S+ P + + RI+ HP + +F+ DIALLEL + ++S ++RP CLP
Sbjct: 61 FLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPD 120
Query: 231 GSLDY-SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKE 289
S + + +++ V GWG T G + ILQK + V+ C+ + +
Sbjct: 121 ASHVFPAGKAIWVTGWGHTQYG---GTGALILQKGEIRVIQQTTCENLLPQQ-----ITP 172
Query: 290 SQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAES 349
MC G GG D+C Q DSGGPL + A+
Sbjct: 173 RMMCVGFLSGGVDSC------------------------------QGDSGGPLSSVEADG 202
Query: 350 TQV-IGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLDI 387
G+VS G GCA+ PG+YTRL + WI + +
Sbjct: 203 RIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENTGV 241
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 5 ILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES 64
ILQK + V+ C+ + + MC G GG D+C DSGGPL + A+
Sbjct: 148 ILQKGEIRVIQQTTCENLLPQQ-----ITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADG 202
Query: 65 TQV-IGLVSTGIG 76
G+VS G G
Sbjct: 203 RIFQAGVVSWGDG 215
>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|B Chain B, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|C Chain C, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|D Chain D, Structure Of A Human Enteropeptidase Light Chain Variant
Length = 235
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 134/275 (48%), Gaps = 47/275 (17%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG A G +PW+V L CG +++ W+V+AAHC+ L S+ L
Sbjct: 1 IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYG--RNLEPSKWTAILG 58
Query: 177 EH---DLSRPSISTVPVL--RIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSG 231
H +L+ P TVP L I+ +P ++ +NDIA++ L + ++D I+P LP
Sbjct: 59 LHMKSNLTSP--QTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEE 116
Query: 232 SLDYSE-QSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKES 290
+ + ++ ++AGWG QG ++ILQ+ + ++SN+ C Q + + N+ E+
Sbjct: 117 NQVFPPGRNCSIAGWGTV---VYQGTTADILQEADVPLLSNERC----QQQMPEYNITEN 169
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
+CAG+E+GG D+C Q DSGGPLM
Sbjct: 170 MICAGYEEGGIDSC------------------------------QGDSGGPLMCQENNRW 199
Query: 351 QVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+ G+ S G CA P PG+Y R++R+ WI L
Sbjct: 200 FLAGVTSFGYECALPNRPGVYARVSRFTEWIQSFL 234
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
++ILQ+ + ++SN+ CQ + + N+ E+ +CAG+E+GG D+C DSGGPLM
Sbjct: 141 ADILQEADVPLLSNERCQ----QQMPEYNITENMICAGYEEGGIDSCQGDSGGPLMCQEN 196
Query: 63 ESTQVIGLVSTG 74
+ G+ S G
Sbjct: 197 NRWFLAGVTSFG 208
>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin
pdb|3DFL|A Chain A, Crystal Structure Of Human Prostasin Complexed To 4-
Guanidinobenzoic Acid
Length = 263
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 127/271 (46%), Gaps = 40/271 (14%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
I GG +A G++PW VS+ G H CGG+++ EQW+++AAHC PS V L
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCF---PSEHHKEAYEVKLG 57
Query: 177 EHDL-SRPSISTVPVLR-IMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
H L S + V L+ I+ HPS+ DIALL+L+R I +S IRP LP+ +
Sbjct: 58 AHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAANAS 117
Query: 235 YSE-QSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKIN---VKES 290
+ TV GWG + S LQ++ + ++S + C A Y + K V+E
Sbjct: 118 FPNGLHCTVTGWGHVAPSVSL-LTPKPLQQLEVPLISRETCNALYNIDAKPEEPHFVQED 176
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
+CAG+ +GGKDAC Q DSGGPL
Sbjct: 177 MVCAGYVEGGKDAC------------------------------QGDSGGPLSCPVEGLW 206
Query: 351 QVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+ G+VS G C PG+YT + Y WI
Sbjct: 207 YLTGIVSWGDACGARNRPGVYTLASSYASWI 237
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKIN---VKESQMCAGHEQGGKDACWADSGGPL 57
LQ++ + ++S + C A Y + K V+E +CAG+ +GGKDAC DSGGPL
Sbjct: 144 LQQLEVPLISRETCNALYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPL 198
>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
Length = 245
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 129/273 (47%), Gaps = 44/273 (16%)
Query: 117 IVGGLAANPGEFPWIVSLK---RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG A ++PW VSL+ R+ HFCGG++IH QW++TAAHC+ GP + + V
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCV--GPDVKDLATLRV 58
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
L+E L +PV RI+ HP DIALLEL + S + LP S
Sbjct: 59 QLREQHLYYQD-QLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASE 117
Query: 234 DYSE-QSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQ---SEGKKIN-VK 288
+ V GWG +N L++V + ++ N +C A Y G + ++
Sbjct: 118 TFPPGMPCWVTGWG-DVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIR 176
Query: 289 ESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAE 348
+ +CAG+ Q +D+C Q DSGGPL+
Sbjct: 177 DDMLCAGNSQ--RDSC------------------------------QGDSGGPLVCKVNG 204
Query: 349 STQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+ G+VS G GCA+P PG+YTR+T Y+ WI
Sbjct: 205 TWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 6 LQKVALSVVSNQVCQAWYQ---SEGKKINV-KESQMCAGHEQGGKDACWADSGGPLMLLG 61
L++V + ++ N +C A Y G + + ++ +CAG+ Q +D+C DSGGPL+
Sbjct: 145 LKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNSQ--RDSCQGDSGGPLVCKV 202
Query: 62 AESTQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 203 NGTWLQAGVVSWGEG 217
>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In
Complex With A Calcium Ion.
pdb|3GYM|A Chain A, Structure Of Prostasin In Complex With Aprotinin
pdb|3GYM|B Chain B, Structure Of Prostasin In Complex With Aprotinin
Length = 261
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 126/271 (46%), Gaps = 40/271 (14%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
I GG +A G++PW VS+ G H CGG+++ EQW+++AAHC PS V L
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCF---PSEHHKEAYEVKLG 57
Query: 177 EHDL-SRPSISTVPVLR-IMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
H L S + V L+ I+ HPS+ DIALL+L+R I +S IRP LP+
Sbjct: 58 AHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQAS 117
Query: 235 YSE-QSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKIN---VKES 290
+ TV GWG + S LQ++ + ++S + C + Y + K V+E
Sbjct: 118 FPNGLHCTVTGWGHVAPSVSL-LTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQED 176
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
+CAG+ +GGKDAC Q DSGGPL
Sbjct: 177 MVCAGYVEGGKDAC------------------------------QGDSGGPLSCPVEGLW 206
Query: 351 QVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+ G+VS G C PG+YT + Y WI
Sbjct: 207 YLTGIVSWGDACGARNRPGVYTLASSYASWI 237
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKIN---VKESQMCAGHEQGGKDACWADSGGPL 57
LQ++ + ++S + C + Y + K V+E +CAG+ +GGKDAC DSGGPL
Sbjct: 144 LQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPL 198
>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A
Covalent Benzoxazole Inhibitor
pdb|3E16|B Chain B, X-Ray Structure Of Human Prostasin In Complex With
Benzoxazole Warhead Peptidomimic, Lysine In P3
pdb|3E1X|B Chain B, The Crystal Structure Of Apo Prostasin At 1.7 Angstroms
Resolution
pdb|3FVF|B Chain B, The Crystal Structure Of Prostasin Complexed With Camostat
At 1.6 Angstroms Resolution
pdb|3E0N|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With
Dffr- Chloromethyl Ketone Inhibitor
Length = 271
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 126/271 (46%), Gaps = 40/271 (14%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
I GG +A G++PW VS+ G H CGG+++ EQW+++AAHC PS V L
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCF---PSEHHKEAYEVKLG 57
Query: 177 EHDL-SRPSISTVPVLR-IMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
H L S + V L+ I+ HPS+ DIALL+L+R I +S IRP LP+
Sbjct: 58 AHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQAS 117
Query: 235 YSE-QSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKIN---VKES 290
+ TV GWG + S LQ++ + ++S + C + Y + K V+E
Sbjct: 118 FPNGLHCTVTGWGHVAPSVSL-LTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQED 176
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
+CAG+ +GGKDAC Q DSGGPL
Sbjct: 177 MVCAGYVEGGKDAC------------------------------QGDSGGPLSCPVEGLW 206
Query: 351 QVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+ G+VS G C PG+YT + Y WI
Sbjct: 207 YLTGIVSWGDACGARNRPGVYTLASSYASWI 237
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKIN---VKESQMCAGHEQGGKDACWADSGGPL 57
LQ++ + ++S + C + Y + K V+E +CAG+ +GGKDAC DSGGPL
Sbjct: 144 LQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPL 198
>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9P|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
Length = 245
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 129/273 (47%), Gaps = 44/273 (16%)
Query: 117 IVGGLAANPGEFPWIVSLK---RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG A ++PW VSL+ R+ HFCGG++IH QW++TAAHC+ GP + + V
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCV--GPDVKDLATLRV 58
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
L+E L +PV RI+ HP DIALLEL + S + LP S
Sbjct: 59 QLREQHLYYQD-QLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASE 117
Query: 234 DYSE-QSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQ---SEGKKIN-VK 288
+ V GWG +N L++V + ++ N +C A Y G + ++
Sbjct: 118 TFPPGMPCWVTGWG-DVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIR 176
Query: 289 ESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAE 348
+ +CAG+ Q +D+C + DSGGPL+
Sbjct: 177 DDMLCAGNSQ--RDSC------------------------------KGDSGGPLVCKVNG 204
Query: 349 STQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+ G+VS G GCA+P PG+YTR+T Y+ WI
Sbjct: 205 TWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 6 LQKVALSVVSNQVCQAWYQ---SEGKKINV-KESQMCAGHEQGGKDACWADSGGPLMLLG 61
L++V + ++ N +C A Y G + + ++ +CAG+ Q +D+C DSGGPL+
Sbjct: 145 LKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNSQ--RDSCKGDSGGPLVCKV 202
Query: 62 AESTQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 203 NGTWLQAGVVSWGEG 217
>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3BN9|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3NCL|A Chain A, Crystal Structure Of Mt-Sp1 Bound To Benzamidine
Phosphonate Inhibitor
pdb|3NPS|A Chain A, Crystal Structure Of Membrane-Type Serine Protease 1
(Mt-Sp1) In Complex With The Fab Inhibitor S4
pdb|3SO3|A Chain A, Structures Of Fab-Protease Complexes Reveal A Highly
Specific Non- Canonical Mechanism Of Inhibition
Length = 241
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 132/279 (47%), Gaps = 46/279 (16%)
Query: 117 IVGGLAANPGEFPWIVSLKRHG-GHFCGGTIIHEQWIVTAAHCLCN--GPSPLSASQINV 173
+VGG A+ GE+PW VSL G GH CG ++I W+V+AAHC + G +Q
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 174 TLKEHDLSR---PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS 230
L HD S+ P + + RI+ HP + +F+ DIALLEL + ++S ++RP LP
Sbjct: 61 FLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPD 120
Query: 231 GSLDY-SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKE 289
S + + +++ V GWG T G + ILQK + V++ C+ + +
Sbjct: 121 ASHVFPAGKAIWVTGWGHTQYG---GTGALILQKGEIRVINQTTCENLLPQQ-----ITP 172
Query: 290 SQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAES 349
MC G GG D+C Q DSGGPL + A+
Sbjct: 173 RMMCVGFLSGGVDSC------------------------------QGDSGGPLSSVEADG 202
Query: 350 TQV-IGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLDI 387
G+VS G GCA+ PG+YTRL + WI + +
Sbjct: 203 RIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENTGV 241
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 5 ILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES 64
ILQK + V++ C+ + + MC G GG D+C DSGGPL + A+
Sbjct: 148 ILQKGEIRVINQTTCENLLPQQ-----ITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADG 202
Query: 65 TQV-IGLVSTGIG 76
G+VS G G
Sbjct: 203 RIFQAGVVSWGDG 215
>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
Length = 245
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 133/272 (48%), Gaps = 53/272 (19%)
Query: 116 KIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
KIVGG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L
Sbjct: 22 KIVGGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRL 72
Query: 176 KEHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
EH+++ + V +I+ HP+ + NNDI L++L+ ++ + + LPS
Sbjct: 73 GEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNAHVATVALPSSCA 132
Query: 234 DYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMC 293
Q + ++GWG N S ++LQ + ++ C+A Y + + ++ +C
Sbjct: 133 PAGTQCL-ISGWG--NTLSSGVNEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVC 184
Query: 294 AGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVI 353
G +GGKD+C Q DSGGP++ G ++
Sbjct: 185 VGFLEGGKDSC------------------------------QGDSGGPVVCNG----ELQ 210
Query: 354 GLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+VS G GCA P PG+YT++ Y+ WI DT+
Sbjct: 211 GIVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 242
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
++LQ + ++ C+A Y + + ++ +C G +GGKD+C DSGGP++
Sbjct: 152 NEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGFLEGGKDSCQGDSGGPVVCN 206
Query: 61 GAESTQVIGLVSTGIG 76
G ++ G+VS G G
Sbjct: 207 G----ELQGIVSWGYG 218
>pdb|1LTO|A Chain A, Human Alpha1-Tryptase
pdb|1LTO|B Chain B, Human Alpha1-Tryptase
pdb|1LTO|C Chain C, Human Alpha1-Tryptase
pdb|1LTO|D Chain D, Human Alpha1-Tryptase
Length = 245
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 128/273 (46%), Gaps = 44/273 (16%)
Query: 117 IVGGLAANPGEFPWIVSLK---RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG A ++PW VSL+ R+ HFCGG++IH QW++TAAHCL GP + + V
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCL--GPDVKDLATLRV 58
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
L+E L +PV RI+ HP DIALLEL + S + LP S
Sbjct: 59 QLREQHLYYQD-QLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASE 117
Query: 234 DYSE-QSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQ---SEGKKIN-VK 288
+ V GWG +N L++V + ++ N +C A Y G + ++
Sbjct: 118 TFPPGMPCWVTGWG-DVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIR 176
Query: 289 ESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAE 348
+ +CAG+ Q +D+C + DSGGPL+
Sbjct: 177 DDMLCAGNSQ--RDSC------------------------------KGDSGGPLVCKVNG 204
Query: 349 STQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+ G+VS GCA+P PG+YTR+T Y+ WI
Sbjct: 205 TWLQAGVVSWDEGCAQPNRPGIYTRVTYYLDWI 237
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 6 LQKVALSVVSNQVCQAWYQ---SEGKKINV-KESQMCAGHEQGGKDACWADSGGPLM 58
L++V + ++ N +C A Y G + + ++ +CAG+ Q +D+C DSGGPL+
Sbjct: 145 LKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNSQ--RDSCKGDSGGPLV 199
>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin
Inhibitor (Bpti)
Length = 233
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 133/272 (48%), Gaps = 53/272 (19%)
Query: 116 KIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
KIVGG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L
Sbjct: 10 KIVGGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRL 60
Query: 176 KEHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
EH+++ + V +I+ HP+ + NNDI L++L+ ++ + + LPS
Sbjct: 61 GEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCA 120
Query: 234 DYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMC 293
Q + ++GWG N S ++LQ + ++ C+A Y + + ++ +C
Sbjct: 121 PAGTQCL-ISGWG--NTLSSGVNEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVC 172
Query: 294 AGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVI 353
G +GGKD+C Q D+GGP++ G ++
Sbjct: 173 VGFLEGGKDSC------------------------------QGDAGGPVVCNG----ELQ 198
Query: 354 GLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+VS G GCA P PG+YT++ Y+ WI DT+
Sbjct: 199 GIVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 230
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
++LQ + ++ C+A Y + + ++ +C G +GGKD+C D+GGP++
Sbjct: 140 NEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGFLEGGKDSCQGDAGGPVVCN 194
Query: 61 GAESTQVIGLVSTGIG 76
G ++ G+VS G G
Sbjct: 195 G----ELQGIVSWGYG 206
>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99rt
pdb|1J14|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99rt
Length = 223
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 133/271 (49%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L
Sbjct: 1 IVGGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH+++ + V +I+ HP+ ++NNDI L++L+ ++ + + LPS
Sbjct: 52 EHNINVLEGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++LQ + ++ C+A Y + + ++ +C
Sbjct: 112 AGTQCL-ISGWG--NTLSSGVNEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q DSGGP++ G ++ G
Sbjct: 164 GFLEGGKDSC------------------------------QGDSGGPVVCNG----ELQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA P PG+YT++ Y+ WI DT+
Sbjct: 190 IVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
++LQ + ++ C+A Y + + ++ +C G +GGKD+C DSGGP++
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGFLEGGKDSCQGDSGGPVVCN 184
Query: 61 GAESTQVIGLVSTGIG 76
G ++ G+VS G G
Sbjct: 185 G----ELQGIVSWGYG 196
>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1PQ5|A Chain A, Trypsin At Ph 5, 0.85 A
pdb|1PQ7|A Chain A, Trypsin At 0.8 A, Ph5 BORAX
pdb|1PQ8|A Chain A, Trypsin At Ph 4 At Atomic Resolution
pdb|2G51|A Chain A, Anomalous Substructure Of Trypsin (P1)
pdb|2G52|A Chain A, Anomalous Substructure Of Trypsin (P21)
pdb|1TRY|A Chain A, Structure Of Inhibited Trypsin From Fusarium Oxysporum At
1.55 Angstroms
pdb|2VU8|E Chain E, Crystal Structure Of An Insect Inhibitor With A Fungal
Trypsin
Length = 224
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 134/262 (51%), Gaps = 53/262 (20%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG +A+ G+FP+IVS+ R+GG +CGG++++ ++TAAHC+ +Q ++
Sbjct: 1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSG------YAQSGFQIR 54
Query: 177 EHDLSRPS---ISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACL-PSGS 232
LSR S S++ +R+ HPS+S + NND+A+L+L+ SI I A L SGS
Sbjct: 55 AGSLSRTSGGITSSLSSVRV--HPSYSGN--NNDLAILKLSTSIPSGGNIGYARLAASGS 110
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
+ S TVAGWG T+E S N+L KV + +VS C+A Y + +
Sbjct: 111 DPVAGSSATVAGWGATSEGGSS-TPVNLL-KVTVPIVSRATCRAQYGTSA----ITNQMF 164
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG GGKD+C Q DSGGP++ S +
Sbjct: 165 CAGVSSGGKDSC------------------------------QGDSGGPIV---DSSNTL 191
Query: 353 IGLVSTGIGCARPRLPGLYTRL 374
IG VS G GCARP G+Y +
Sbjct: 192 IGAVSWGNGCARPNYSGVYASV 213
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
L KV + +VS C+A Y + + CAG GGKD+C DSGGP++ S
Sbjct: 137 LLKVTVPIVSRATCRAQYGTSA----ITNQMFCAGVSSGGKDSCQGDSGGPIV---DSSN 189
Query: 66 QVIGLVSTGIG 76
+IG VS G G
Sbjct: 190 TLIGAVSWGNG 200
>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His
Length = 223
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 132/271 (48%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L
Sbjct: 1 IVGGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH+++ + V +I+ HP+ + NNDI L++L+ ++ + + LPS
Sbjct: 52 EHNINVLEGNEQFVNAAKIIKHPNFDHKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++LQ + ++ C+A Y + + ++ +C
Sbjct: 112 AGTQCL-ISGWG--NTLSSGVNEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q DSGGP++ G ++ G
Sbjct: 164 GFLEGGKDSC------------------------------QGDSGGPVVCNG----ELQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA P PG+YT++ Y+ WI DT+
Sbjct: 190 IVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
++LQ + ++ C+A Y + + ++ +C G +GGKD+C DSGGP++
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGFLEGGKDSCQGDSGGPVVCN 184
Query: 61 GAESTQVIGLVSTGIG 76
G ++ G+VS G G
Sbjct: 185 G----ELQGIVSWGYG 196
>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 233
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 132/271 (48%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L
Sbjct: 11 IVGGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRLG 61
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH+++ + V +I+ HP+ + NNDI L++L+ ++ + + LPS
Sbjct: 62 EHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 121
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++LQ + ++ C+A Y + + ++ +C
Sbjct: 122 AGTQCL-ISGWG--NTLSSGVNEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCV 173
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q DSGGP++ G ++ G
Sbjct: 174 GFLEGGKDSC------------------------------QGDSGGPVVCNG----ELQG 199
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA P PG+YT++ Y+ WI DT+
Sbjct: 200 IVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 230
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
++LQ + ++ C+A Y + + ++ +C G +GGKD+C DSGGP++
Sbjct: 140 NEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGFLEGGKDSCQGDSGGPVVCN 194
Query: 61 GAESTQVIGLVSTGIG 76
G ++ G+VS G G
Sbjct: 195 G----ELQGIVSWGYG 206
>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant
Length = 235
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 132/273 (48%), Gaps = 49/273 (17%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPS-PLSASQINVTL 175
+VGG A PG+FPW V L FCGG+I++E+WIVTAAHC+ G + A + N+
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEE 60
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCS--SFNNDIALLELTRSIQWSDLIRPACLPSG-- 231
EH + + V+RI+ H +++ + ++N+DIALLEL + + + P C+
Sbjct: 61 TEHTEQKRN-----VIRIIPHHNYNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEY 115
Query: 232 -SLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKES 290
++ S V+GWG +GR + +LQ + + +V C K + +
Sbjct: 116 TNIFLKFGSGYVSGWGRVFH---KGRSALVLQYLRVPLVDRATCL-----RSTKFTITNN 167
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
CAG +GG+D+C Q DSGGP + ++
Sbjct: 168 MFCAGFHEGGRDSC------------------------------QGDSGGPHVTEVEGTS 197
Query: 351 QVIGLVSTGIGCARPRLPGLYTRLTRYIGWISD 383
+ G++S G CA G+YT+++RY+ WI +
Sbjct: 198 FLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R + +LQ + + +V C K + + CAG +GG+D+C DSGGP +
Sbjct: 138 RSALVLQYLRVPLVDRATCL-----RSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTE 192
Query: 61 GAESTQVIGLVSTG 74
++ + G++S G
Sbjct: 193 VEGTSFLTGIISWG 206
>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
pdb|1ANE|A Chain A, Anionic Trypsin Wild Type
pdb|3FP6|E Chain E, Anionic Trypsin In Complex With Bovine Pancreatic Trypsin
Inhibitor (Bpti) Determined To The 1.49 A Resolution
Limit
Length = 223
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 132/271 (48%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L
Sbjct: 1 IVGGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH+++ + V +I+ HP+ + NNDI L++L+ ++ + + LPS
Sbjct: 52 EHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++LQ + ++ C+A Y + + ++ +C
Sbjct: 112 AGTQCL-ISGWG--NTLSSGVNEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q DSGGP++ G ++ G
Sbjct: 164 GFLEGGKDSC------------------------------QGDSGGPVVCNG----ELQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA P PG+YT++ Y+ WI DT+
Sbjct: 190 IVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
++LQ + ++ C+A Y + + ++ +C G +GGKD+C DSGGP++
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGFLEGGKDSCQGDSGGPVVCN 184
Query: 61 GAESTQVIGLVSTGIG 76
G ++ G+VS G G
Sbjct: 185 G----ELQGIVSWGYG 196
>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino
Benzamidine
pdb|3LC3|A Chain A, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC3|C Chain C, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC5|A Chain A, Selective Benzothiophine Inhibitors Of Factor Ixa
Length = 235
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 131/273 (47%), Gaps = 49/273 (17%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPS-PLSASQINVTL 175
+VGG A PG+FPW V L FCGG+I++E+WIVTAAHC+ G + A + N+
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEE 60
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCS--SFNNDIALLELTRSIQWSDLIRPACLPSG-- 231
EH + + V+RI+ H +++ + +N+DIALLEL + + + P C+
Sbjct: 61 TEHTEQKRN-----VIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEY 115
Query: 232 -SLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKES 290
++ S V+GWG +GR + +LQ + + +V C K + +
Sbjct: 116 TNIFLKFGSGYVSGWGRVFH---KGRSALVLQYLRVPLVDRATCL-----RSTKFTIYNN 167
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
CAG +GG+D+C Q DSGGP + ++
Sbjct: 168 MFCAGFHEGGRDSC------------------------------QGDSGGPHVTEVEGTS 197
Query: 351 QVIGLVSTGIGCARPRLPGLYTRLTRYIGWISD 383
+ G++S G CA G+YT+++RY+ WI +
Sbjct: 198 FLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R + +LQ + + +V C K + + CAG +GG+D+C DSGGP +
Sbjct: 138 RSALVLQYLRVPLVDRATCL-----RSTKFTIYNNMFCAGFHEGGRDSCQGDSGGPHVTE 192
Query: 61 GAESTQVIGLVSTG 74
++ + G++S G
Sbjct: 193 VEGTSFLTGIISWG 206
>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution
pdb|1PQA|A Chain A, Trypsin With Pmsf At Atomic Resolution
Length = 224
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 133/262 (50%), Gaps = 53/262 (20%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG +A+ G+FP+IVS+ R+GG +CGG++++ ++TAAHC+ +Q ++
Sbjct: 1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSG------YAQSGFQIR 54
Query: 177 EHDLSRPS---ISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACL-PSGS 232
LSR S S++ +R+ HPS+S + NND+A+L+L+ SI I A L SGS
Sbjct: 55 AGSLSRTSGGITSSLSSVRV--HPSYSGN--NNDLAILKLSTSIPSGGNIGYARLAASGS 110
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
+ S TVAGWG T+E S N+L KV + +VS C+A Y + +
Sbjct: 111 DPVAGSSATVAGWGATSEGGSS-TPVNLL-KVTVPIVSRATCRAQYGTSA----ITNQMF 164
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG GGKD+C Q D GGP++ S +
Sbjct: 165 CAGVSSGGKDSC------------------------------QGDXGGPIV---DSSNTL 191
Query: 353 IGLVSTGIGCARPRLPGLYTRL 374
IG VS G GCARP G+Y +
Sbjct: 192 IGAVSWGNGCARPNYSGVYASV 213
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
L KV + +VS C+A Y + + CAG GGKD+C D GGP++ S
Sbjct: 137 LLKVTVPIVSRATCRAQYGTSA----ITNQMFCAGVSSGGKDSCQGDXGGPIV---DSSN 189
Query: 66 QVIGLVSTGIG 76
+IG VS G G
Sbjct: 190 TLIGAVSWGNG 200
>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J16|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J17|T Chain T, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99175190RT
Length = 223
Score = 121 bits (303), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 131/271 (48%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L
Sbjct: 1 IVGGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH+++ + V +I+ HP+ ++NNDI L++L+ ++ + + LPS
Sbjct: 52 EHNINVLEGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++LQ + ++ C+A + ++ +C
Sbjct: 112 AGTQCL-ISGWG--NTLSSGVNEPDLLQCLDAPLLPQADCEA-----SSSFIITDNMVCV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKDAC Q DSGGP++ G ++ G
Sbjct: 164 GFLEGGKDAC------------------------------QGDSGGPVVCNG----ELQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA P PG+YT++ Y+ WI DT+
Sbjct: 190 IVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ ++ +C G +GGKDAC DSGGP++ G ++ G+VS G G
Sbjct: 156 ITDNMVCVGFLEGGKDACQGDSGGPVVCNG----ELQGIVSWGYG 196
>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To
Atomic Resolution
pdb|1XVO|A Chain A, Trypsin From Fusarium Oxysporum At Ph 6
pdb|1FY5|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDN|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FY4|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FN8|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDQ|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
Length = 224
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 133/261 (50%), Gaps = 53/261 (20%)
Query: 118 VGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLKE 177
VGG +A+ G+FP+IVS+ R+GG +CGG++++ ++TAAHC+ +Q ++
Sbjct: 2 VGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSG------YAQSGFQIRA 55
Query: 178 HDLSRPS---ISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACL-PSGSL 233
LSR S S++ +R+ HPS+S + NND+A+L+L+ SI I A L SGS
Sbjct: 56 GSLSRTSGGITSSLSSVRV--HPSYSGN--NNDLAILKLSTSIPSGGNIGYARLAASGSD 111
Query: 234 DYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMC 293
+ S TVAGWG T+E S N+L KV + +VS C+A Y + + C
Sbjct: 112 PVAGSSATVAGWGATSEGGSS-TPVNLL-KVTVPIVSRATCRAQYGTSA----ITNQMFC 165
Query: 294 AGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVI 353
AG GGKD+C Q DSGGP++ S +I
Sbjct: 166 AGVSSGGKDSC------------------------------QGDSGGPIV---DSSNTLI 192
Query: 354 GLVSTGIGCARPRLPGLYTRL 374
G VS G GCARP G+Y +
Sbjct: 193 GAVSWGNGCARPNYSGVYASV 213
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
L KV + +VS C+A Y + + CAG GGKD+C DSGGP++ S
Sbjct: 137 LLKVTVPIVSRATCRAQYGTSA----ITNQMFCAGVSSGGKDSCQGDSGGPIV---DSSN 189
Query: 66 QVIGLVSTGIG 76
+IG VS G G
Sbjct: 190 TLIGAVSWGNG 200
>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Zinc-Bound
pdb|1SLV|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Copper- Bound
pdb|1SLU|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin
Length = 223
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 132/271 (48%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L
Sbjct: 1 IVGGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH+++ + V +I+ HP+ + NNDI L++L+ ++ + + LPS
Sbjct: 52 EHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG T S ++LQ + ++ C+A Y + + ++ +C
Sbjct: 112 AGTQCL-ISGWGHTLS--SGVNHPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q DSGGP++ G ++ G
Sbjct: 164 GFLEGGKDSC------------------------------QGDSGGPVVCNG----ELQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA P PG+YT++ Y+ WI DT+
Sbjct: 190 IVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++LQ + ++ C+A Y + + ++ +C G +GGKD+C DSGGP++ G
Sbjct: 133 DLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGFLEGGKDSCQGDSGGPVVCNG-- 185
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 186 --ELQGIVSWGYG 196
>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex
pdb|1YKT|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLC|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLD|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|3FP7|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Cleaved At The
Scissile Bond (Lys15-Ala16) Determined To The 1.46 A
Resolution Limit
pdb|3FP8|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Determined To The
1.46 A Resolution Limit
Length = 223
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 132/271 (48%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L
Sbjct: 1 IVGGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH+++ + V +I+ HP+ + NNDI L++L+ ++ + + LPS
Sbjct: 52 EHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++LQ + ++ C+A Y + + ++ +C
Sbjct: 112 AGTQCL-ISGWG--NTLSSGVNEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q D+GGP++ G ++ G
Sbjct: 164 GFLEGGKDSC------------------------------QGDAGGPVVCNG----ELQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA P PG+YT++ Y+ WI DT+
Sbjct: 190 IVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
++LQ + ++ C+A Y + + ++ +C G +GGKD+C D+GGP++
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGFLEGGKDSCQGDAGGPVVCN 184
Query: 61 GAESTQVIGLVSTGIG 76
G ++ G+VS G G
Sbjct: 185 G----ELQGIVSWGYG 196
>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 235
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 131/273 (47%), Gaps = 49/273 (17%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPS-PLSASQINVTL 175
+VGG A PG+FPW V L FCGG+I++E+WIVTAAHC+ G + A + N+
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEE 60
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCS--SFNNDIALLELTRSIQWSDLIRPACLPSG-- 231
EH + + V+RI+ H + + + ++N+DIALLEL + + + P C+
Sbjct: 61 TEHTEQKRN-----VIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEY 115
Query: 232 -SLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKES 290
++ S V+GWG +GR + +LQ + + +V C K + +
Sbjct: 116 TNIFLKFGSGYVSGWGRVFH---KGRAALVLQYLRVPLVDRATCL-----RSTKFTITNN 167
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
CAG +GG+D+C Q DSGGP + ++
Sbjct: 168 MFCAGFHEGGRDSC------------------------------QGDSGGPHVTEVEGTS 197
Query: 351 QVIGLVSTGIGCARPRLPGLYTRLTRYIGWISD 383
+ G++S G CA G+YT+++RY+ WI +
Sbjct: 198 FLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R + +LQ + + +V C K + + CAG +GG+D+C DSGGP +
Sbjct: 138 RAALVLQYLRVPLVDRATCL-----RSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTE 192
Query: 61 GAESTQVIGLVSTG 74
++ + G++S G
Sbjct: 193 VEGTSFLTGIISWG 206
>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant
pdb|2WPJ|S Chain S, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|S Chain S, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|S Chain S, Factor Ixa Superactive Triple Mutant, Edta-Soaked
Length = 235
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 131/273 (47%), Gaps = 49/273 (17%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPS-PLSASQINVTL 175
+VGG A PG+FPW V L FCGG+I++E+WIVTAAHC+ G + A + N+
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEE 60
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCS--SFNNDIALLELTRSIQWSDLIRPACLPSG-- 231
EH + + V+RI+ H + + + ++N+DIALLEL + + + P C+
Sbjct: 61 TEHTEQKRN-----VIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEY 115
Query: 232 -SLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKES 290
++ S V+GWG +GR + +LQ + + +V C K + +
Sbjct: 116 TNIFLKFGSGYVSGWGRVFH---KGRSALVLQYLRVPLVDRATCL-----RSTKFTITNN 167
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
CAG +GG+D+C Q DSGGP + ++
Sbjct: 168 MFCAGFHEGGRDSC------------------------------QGDSGGPHVTEVEGTS 197
Query: 351 QVIGLVSTGIGCARPRLPGLYTRLTRYIGWISD 383
+ G++S G CA G+YT+++RY+ WI +
Sbjct: 198 FLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R + +LQ + + +V C K + + CAG +GG+D+C DSGGP +
Sbjct: 138 RSALVLQYLRVPLVDRATCL-----RSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTE 192
Query: 61 GAESTQVIGLVSTG 74
++ + G++S G
Sbjct: 193 VEGTSFLTGIISWG 206
>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Nickel- Bound
Length = 223
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 132/271 (48%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L
Sbjct: 1 IVGGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH+++ + V +I+ HP+ + NNDI L++L+ ++ + + LPS
Sbjct: 52 EHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATIALPSSCAP 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG T S ++LQ + ++ C+A Y + + ++ +C
Sbjct: 112 AGTQCL-ISGWGHTLS--SGVNHPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q DSGGP++ G ++ G
Sbjct: 164 GFLEGGKDSC------------------------------QGDSGGPVVCNG----ELQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA P PG+YT++ Y+ WI DT+
Sbjct: 190 IVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++LQ + ++ C+A Y + + ++ +C G +GGKD+C DSGGP++ G
Sbjct: 133 DLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGFLEGGKDSCQGDSGGPVVCNG-- 185
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 186 --ELQGIVSWGYG 196
>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys
Length = 223
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 131/271 (48%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L
Sbjct: 1 IVGGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH+++ + V +I+ HP+ + NNDI L++L+ ++ + + LPS
Sbjct: 52 EHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++LQ + ++ C+A Y + + ++ +C
Sbjct: 112 AGTQCL-ISGWG--NTLSSGVNEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q DSGGP++ G ++ G
Sbjct: 164 GFLEGGKDSC------------------------------QGDSGGPVVCNG----ELQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+V G GCA P PG+YT++ Y+ WI DT+
Sbjct: 190 IVKWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
++LQ + ++ C+A Y + + ++ +C G +GGKD+C DSGGP++
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGFLEGGKDSCQGDSGGPVVCN 184
Query: 61 GAESTQVIGLVSTGIG 76
G ++ G+V G G
Sbjct: 185 G----ELQGIVKWGYG 196
>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram
Spermatozoa
Length = 290
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 134/286 (46%), Gaps = 55/286 (19%)
Query: 117 IVGGLAANPGEFPWIVSLK---RHGG---HFCGGTIIHEQWIVTAAHCLCNGPSPLSASQ 170
I+GG A G +PW+VSL+ H H CGG++++ QW++TAAHC ++ +
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCF-RIKKKVTDWR 59
Query: 171 INVTLKEHDLS-----RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRP 225
+ KE + +P + V +I+ H +S SS NDIAL+++T + I P
Sbjct: 60 LIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGP 119
Query: 226 ACLPS--GSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQA--WYQSE 281
CLP Q+ VAGWG+ EN R S +LQ+ + ++ +C + WY
Sbjct: 120 GCLPQFRAGPPRVPQTCWVAGWGFLQENAR--RTSPMLQEARVDLIDLGLCNSTRWYNGR 177
Query: 282 GKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGP 341
+ NV CAG+ +G D C Q DSGGP
Sbjct: 178 IRSTNV-----CAGYPEGKIDTC------------------------------QGDSGGP 202
Query: 342 LMLLGA--ESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
LM + S V+G+ S G+GCAR + PG+YT Y+ WI+ +
Sbjct: 203 LMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKI 248
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 1 RRSNILQKVALSVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLM 58
R S +LQ+ + ++ +C + WY + NV CAG+ +G D C DSGGPLM
Sbjct: 150 RTSPMLQEARVDLIDLGLCNSTRWYNGRIRSTNV-----CAGYPEGKIDTCQGDSGGPLM 204
Query: 59 LLGA--ESTQVIGLVSTGIG 76
+ S V+G+ S G+G
Sbjct: 205 CKDSAENSYVVVGITSWGVG 224
>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 235
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 131/273 (47%), Gaps = 49/273 (17%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPS-PLSASQINVTL 175
+VGG A PG+FPW V L FCGG+I++E+WIVTAAHC+ G + A + N+
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEE 60
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCS--SFNNDIALLELTRSIQWSDLIRPACLPSG-- 231
EH + + V+RI+ H +++ + +N+DIALLEL + + + P C+
Sbjct: 61 TEHTEQKRN-----VIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEY 115
Query: 232 -SLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKES 290
++ S V+GWG +GR + +LQ + + +V C K + +
Sbjct: 116 TNIFLKFGSGYVSGWGRVFH---KGRSALVLQYLRVPLVDRATCL-----RSTKFTIYNN 167
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
CAG +GG+D+C Q D+GGP + ++
Sbjct: 168 MFCAGFHEGGRDSC------------------------------QGDAGGPHVTEVEGTS 197
Query: 351 QVIGLVSTGIGCARPRLPGLYTRLTRYIGWISD 383
+ G++S G CA G+YT+++RY+ WI +
Sbjct: 198 FLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R + +LQ + + +V C K + + CAG +GG+D+C D+GGP +
Sbjct: 138 RSALVLQYLRVPLVDRATCL-----RSTKFTIYNNMFCAGFHEGGRDSCQGDAGGPHVTE 192
Query: 61 GAESTQVIGLVSTG 74
++ + G++S G
Sbjct: 193 VEGTSFLTGIISWG 206
>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu
Length = 223
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 131/271 (48%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L
Sbjct: 1 IVGGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH+++ + V +I+ HP+ + NNDI L++L+ ++ + + LPS
Sbjct: 52 EHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++LQ + ++ C+A Y + + ++ +C
Sbjct: 112 AGTQCL-ISGWG--NTLSSGVNEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q DSGGP++ G ++ G
Sbjct: 164 GFLEGGKDSC------------------------------QGDSGGPVVCNG----ELQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+V G GCA P PG+YT++ Y+ WI DT+
Sbjct: 190 IVEWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
++LQ + ++ C+A Y + + ++ +C G +GGKD+C DSGGP++
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGFLEGGKDSCQGDSGGPVVCN 184
Query: 61 GAESTQVIGLVSTGIG 76
G ++ G+V G G
Sbjct: 185 G----ELQGIVEWGYG 196
>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTK|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTL|M Chain M, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTM|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
Length = 242
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 133/272 (48%), Gaps = 54/272 (19%)
Query: 116 KIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
KIVGG P P VSL G HFCGG++++E W+V+AAHC S++ V L
Sbjct: 20 KIVGGYECKPYSQPHQVSLNS-GYHFCGGSLVNENWVVSAAHCY--------KSRVEVRL 70
Query: 176 KEHDL--SRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
EH++ + S + R++ HP++S + +NDI L++L++ + ++P LP+ S
Sbjct: 71 GEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPT-SC 129
Query: 234 DYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMC 293
+ TV+GWG T S SN LQ + + ++S C Y + + C
Sbjct: 130 APAGTMCTVSGWGNT---MSSTADSNKLQCLNIPILSYSDCNNSYPGM-----ITNAMFC 181
Query: 294 AGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVI 353
AG+ +GGKD+C Q DSGGP++ G ++
Sbjct: 182 AGYLEGGKDSC------------------------------QGDSGGPVVCNG----ELQ 207
Query: 354 GLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+VS G GCA P PG+Y ++ + W++ T+
Sbjct: 208 GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 239
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
SN LQ + + ++S C Y + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 151 SNKLQCLNIPILSYSDCNNSYPGM-----ITNAMFCAGYLEGGKDSCQGDSGGPVVCNG- 204
Query: 63 ESTQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 205 ---ELQGVVSWGYG 215
>pdb|1PFX|C Chain C, Porcine Factor Ixa
pdb|1X7A|C Chain C, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 235
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 131/274 (47%), Gaps = 51/274 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG A PG+FPW V L FCGG+II+E+W+VTAAHC+ G +I V
Sbjct: 1 IVGGENAKPGQFPWQVLLNGKIDAFCGGSIINEKWVVTAAHCIEPG------VKITVVAG 54
Query: 177 EHDL--SRPSISTVPVLRIMFHPSHSCS--SFNNDIALLELTRSIQWSDLIRPACLPSG- 231
E++ + P+ V+R + H S++ + +++DIALLEL + + + P C+
Sbjct: 55 EYNTEETEPTEQRRNVIRAIPHHSYNATVNKYSHDIALLELDEPLTLNSYVTPICIADKE 114
Query: 232 --SLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKE 289
++ S V+GWG ++GR + ILQ + + +V C K +
Sbjct: 115 YTNIFLKFGSGYVSGWGRVF---NRGRSATILQYLKVPLVDRATCL-----RSTKFTIYS 166
Query: 290 SQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAES 349
+ CAG +GGKD+C Q DSGGP + +
Sbjct: 167 NMFCAGFHEGGKDSC------------------------------QGDSGGPHVTEVEGT 196
Query: 350 TQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISD 383
+ + G++S G CA G+YT+++RY+ WI +
Sbjct: 197 SFLTGIISWGEECAVKGKYGIYTKVSRYVNWIKE 230
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R + ILQ + + +V C K + + CAG +GGKD+C DSGGP +
Sbjct: 138 RSATILQYLKVPLVDRATCL-----RSTKFTIYSNMFCAGFHEGGKDSCQGDSGGPHVTE 192
Query: 61 GAESTQVIGLVSTG 74
++ + G++S G
Sbjct: 193 VEGTSFLTGIISWG 206
>pdb|1DPO|A Chain A, Structure Of Rat Trypsin
Length = 223
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 131/271 (48%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L
Sbjct: 1 IVGGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH+++ + V +I+ HP+ + NNDI L++L+ ++ + + LPS
Sbjct: 52 EHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++LQ + ++ C+A Y + + ++ +C
Sbjct: 112 AGTQCL-ISGWG--NTLSSGVNEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q D GGP++ G ++ G
Sbjct: 164 GFLEGGKDSC------------------------------QGDCGGPVVCNG----ELQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA P PG+YT++ Y+ WI DT+
Sbjct: 190 IVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
++LQ + ++ C+A Y + + ++ +C G +GGKD+C D GGP++
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGFLEGGKDSCQGDCGGPVVCN 184
Query: 61 GAESTQVIGLVSTGIG 76
G ++ G+VS G G
Sbjct: 185 G----ELQGIVSWGYG 196
>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of
The Complex Formed Between Porcine Beta-trypsin And
Mcti-a, A Trypsin Inhibitor Of Squash Family
pdb|1QQU|A Chain A, Crystal Structure Of Porcine Beta Trypsin With Bound
Acetate Ion
pdb|1FMG|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.04%
Polydocanol
pdb|1FN6|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.1%
Polydocanol
pdb|1FNI|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.01%
Polydocanol
Length = 223
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 129/271 (47%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC S+I V L
Sbjct: 1 IVGGYTCAANSIPYQVSLNS-GSHFCGGSLINSQWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EH--DLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH D+ + + +I+ HP+ + ++ +NDI L++L+ + + LP S
Sbjct: 52 EHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPR-SCA 110
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
+ ++GWG N S ++LQ + V+SN C++ Y + + + +C
Sbjct: 111 AAGTECLISGWG--NTKSSGSSYPSLLQCLKAPVLSNSSCKSSYPGQ-----ITGNMICV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G QGGKD+C Q DSGGP++ G Q+ G
Sbjct: 164 GFLQGGKDSC------------------------------QGDSGGPVVCNG----QLQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 190 IVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 5 ILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES 64
+LQ + V+SN C++ Y + + + +C G QGGKD+C DSGGP++ G
Sbjct: 134 LLQCLKAPVLSNSSCKSSYPGQ-----ITGNMICVGFLQGGKDSCQGDSGGPVVCNG--- 185
Query: 65 TQVIGLVSTGIG 76
Q+ G+VS G G
Sbjct: 186 -QLQGIVSWGYG 196
>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|1TRM|B Chain B, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|2TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
Length = 223
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 132/271 (48%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L
Sbjct: 1 IVGGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH+++ + V +I+ HP+ + NN+I L++L+ ++ + + LPS
Sbjct: 52 EHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++LQ + ++ C+A Y + + ++ +C
Sbjct: 112 AGTQCL-ISGWG--NTLSSGVNEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q DSGGP++ G ++ G
Sbjct: 164 GFLEGGKDSC------------------------------QGDSGGPVVCNG----ELQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA P PG+YT++ Y+ WI DT+
Sbjct: 190 IVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
++LQ + ++ C+A Y + + ++ +C G +GGKD+C DSGGP++
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGFLEGGKDSCQGDSGGPVVCN 184
Query: 61 GAESTQVIGLVSTGIG 76
G ++ G+VS G G
Sbjct: 185 G----ELQGIVSWGYG 196
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 132/279 (47%), Gaps = 53/279 (18%)
Query: 113 RTGKIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQIN 172
R +IVGG A G+ PW V++K G CGG I WI+TAAHCL S QI
Sbjct: 318 RRKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCL--RASKTHRYQIW 375
Query: 173 VTLKE---HDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSD--LIR--P 225
T+ + DL R I V RI+FH +++ ++ NDIAL+E+ + D L R P
Sbjct: 376 TTVVDWIHPDLKRIVIEYVD--RIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIP 433
Query: 226 ACLP-SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKK 284
AC+P S L + V+GWG +N R LQ + ++SN C +Y G +
Sbjct: 434 ACVPWSPYLFQPNDTCIVSGWGREKDN----ERVFSLQWGEVKLISN--CSKFY---GNR 484
Query: 285 INVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLML 344
KE + CAG G DAC + DSGGPL+
Sbjct: 485 FYEKEME-CAGTYDGSIDAC------------------------------KGDSGGPLVC 513
Query: 345 LGAES-TQVIGLVSTGIGCARPRLPGLYTRLTRYIGWIS 382
+ A + T V G+VS G C +P PG+YT++ Y WIS
Sbjct: 514 MDANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWIS 552
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES- 64
LQ + ++SN C +Y G + KE + CAG G DAC DSGGPL+ + A +
Sbjct: 466 LQWGEVKLISN--CSKFY---GNRFYEKEME-CAGTYDGSIDACKGDSGGPLVCMDANNV 519
Query: 65 TQVIGLVSTG 74
T V G+VS G
Sbjct: 520 TYVWGVVSWG 529
>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZS|D Chain D, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZU|C Chain C, Ecotin Y69f, D70p Bound To D102n Trypsin
pdb|1EZU|D Chain D, Ecotin Y69f, D70p Bound To D102n Trypsin
Length = 223
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 131/271 (48%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L
Sbjct: 1 IVGGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH+++ V +I+ HP+ + NN+I L++L+ ++ + + LPS
Sbjct: 52 EHNINVLEGDEQFVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++LQ + ++ C+A Y + + ++ +C
Sbjct: 112 AGTQCL-ISGWG--NTLSSGVNEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q DSGGP++ G ++ G
Sbjct: 164 GFLEGGKDSC------------------------------QGDSGGPVVCNG----ELQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA P PG+YT++ Y+ WI DT+
Sbjct: 190 IVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
++LQ + ++ C+A Y + + ++ +C G +GGKD+C DSGGP++
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGFLEGGKDSCQGDSGGPVVCN 184
Query: 61 GAESTQVIGLVSTGIG 76
G ++ G+VS G G
Sbjct: 185 G----ELQGIVSWGYG 196
>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
Length = 237
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 128/271 (47%), Gaps = 51/271 (18%)
Query: 116 KIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVT 174
KIVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 14 KIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVV 72
Query: 175 LKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
S S V HPS++ ++ NNDI L++L + + + LP+
Sbjct: 73 EGNEQFISASKSIV-------HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS 125
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++L+ + ++S+ C++ Y + + + CA
Sbjct: 126 AGTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCA 177
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G+ +GGKD+C Q DSGGP++ G ++ G
Sbjct: 178 GYLEGGKDSC------------------------------QGDSGGPVVCSG----KLQG 203
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 204 IVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 234
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++L+ + ++S+ C++ Y + + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 147 DVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAGYLEGGKDSCQGDSGGPVVCSG-- 199
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 200 --KLQGIVSWGSG 210
>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Magnesium(Ii) Chelate
pdb|1G3C|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff Base
Iron(Iii) Chelate
pdb|1G3D|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Copper (Ii) Chelate
pdb|1G3E|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff-Base
Copper (Ii) Chelate
Length = 228
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 128/271 (47%), Gaps = 51/271 (18%)
Query: 116 KIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPS-PLSASQINVT 174
KIVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 5 KIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVV 63
Query: 175 LKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
S S V HPS++ ++ NNDI L++L + + + LP+
Sbjct: 64 EGNEQFISASKSIV-------HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS 116
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++L+ + ++S+ C++ Y + + + CA
Sbjct: 117 AGTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCA 168
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G+ +GGKD+C Q DSGGP++ G ++ G
Sbjct: 169 GYLEGGKDSC------------------------------QGDSGGPVVCSG----KLQG 194
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 195 IVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 225
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++L+ + ++S+ C++ Y + + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 138 DVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAGYLEGGKDSCQGDSGGPVVCSG-- 190
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 191 --KLQGIVSWGSG 201
>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between
Pancreatic Secretory Inhibitor (Kazal Type) And
Trypsinogen At 1.8 Angstroms Resolution. Structure
Solution, Crystallographic Refinement And Preliminary
Structural Interpretation
pdb|2TGP|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2TPI|Z Chain Z, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3TPI|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|4TPI|Z Chain Z, The Refined 2.2-angstroms (0.22-nm) X-ray Crystal
Structure Of The Ternary Complex Formed By Bovine
Trypsinogen, Valine-valine And The Arg15 Analogue Of
Bovine Pancreatic Trypsin Inhibitor
pdb|1BTZ|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTX|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTW|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTP|A Chain A, Unique Binding Of A Novel Synthetic Inhibitor, N-[3-[4-[4-
(Amidinophenoxy)-Carbonyl]phenyl]-2-Methyl-2-Propenoyl]-
N- Allylglycine Methanesulfonate To Bovine Trypsin,
Revealed By The Crystal Structure Of The Complex
pdb|1BTY|A Chain A, Crystal Structure Of Beta-Trypsin In Complex With
Benzamidine
pdb|1TGB|A Chain A, Crystal Structure Of Bovine Trypsinogen At 1.8 Angstroms
Resolution. Ii. Crystallographic Refinement, Refined
Crystal Structure And Comparison With Bovine Trypsin
pdb|1TGC|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TGN|A Chain A, Structure Of Bovine Trypsinogen At 1.9 Angstroms
Resolution
pdb|1TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TNG|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNH|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNI|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNJ|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNK|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNL|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|2TGA|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|2TGD|A Chain A, Lack Of The Transition State Stabilization Site Is A
Factor In The Inactivity Of Trypsinogen, A Serine
Protease Zymogen. Structure Of Dfp Inhibited Bovine
Trypsinogen At 2.1 Angstroms Resolution
pdb|2TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
Length = 229
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 128/271 (47%), Gaps = 51/271 (18%)
Query: 116 KIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVT 174
KIVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 6 KIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVV 64
Query: 175 LKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
S S V HPS++ ++ NNDI L++L + + + LP+
Sbjct: 65 EGNEQFISASKSIV-------HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS 117
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++L+ + ++S+ C++ Y + + + CA
Sbjct: 118 AGTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCA 169
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G+ +GGKD+C Q DSGGP++ G ++ G
Sbjct: 170 GYLEGGKDSC------------------------------QGDSGGPVVCSG----KLQG 195
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 196 IVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 226
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++L+ + ++S+ C++ Y + + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 139 DVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAGYLEGGKDSCQGDSGGPVVCSG-- 191
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 192 --KLQGIVSWGSG 202
>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
pdb|1AMH|B Chain B, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
Length = 223
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 131/271 (48%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L
Sbjct: 1 IVGGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH+++ + V +I+ HP+ + NNDI L++L+ ++ + + LPS
Sbjct: 52 EHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++LQ + ++ C+A Y + + ++ +C
Sbjct: 112 AGTQCL-ISGWG--NTLSSGVNEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGK +C Q DSGGP++ G ++ G
Sbjct: 164 GFLEGGKSSC------------------------------QGDSGGPVVCNG----ELQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA P PG+YT++ Y+ WI DT+
Sbjct: 190 IVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
++LQ + ++ C+A Y + + ++ +C G +GGK +C DSGGP++
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGFLEGGKSSCQGDSGGPVVCN 184
Query: 61 GAESTQVIGLVSTGIG 76
G ++ G+VS G G
Sbjct: 185 G----ELQGIVSWGYG 196
>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247
pdb|1F0U|A Chain A, Bovine Trypsin Complexed With Rpr128515
pdb|1EZX|C Chain C, Crystal Structure Of A Serpin:protease Complex
pdb|1LQE|A Chain A, Crystal Structure Of Trypsin In Complex With 79.
pdb|1UTN|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTO|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-ray Structures And Association Constant Measurements
pdb|1UTP|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTQ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|2BY5|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY6|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY7|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY8|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY9|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BYA|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 243
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 128/271 (47%), Gaps = 51/271 (18%)
Query: 116 KIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVT 174
KIVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 20 KIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVV 78
Query: 175 LKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
S S V HPS++ ++ NNDI L++L + + + LP+
Sbjct: 79 EGNEQFISASKSIV-------HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS 131
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++L+ + ++S+ C++ Y + + + CA
Sbjct: 132 AGTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCA 183
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G+ +GGKD+C Q DSGGP++ G ++ G
Sbjct: 184 GYLEGGKDSC------------------------------QGDSGGPVVCSG----KLQG 209
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 210 IVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 240
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++L+ + ++S+ C++ Y + + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 153 DVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAGYLEGGKDSCQGDSGGPVVCSG-- 205
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 206 --KLQGIVSWGSG 216
>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin
Length = 231
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 130/272 (47%), Gaps = 53/272 (19%)
Query: 116 KIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
KIVGG P+ VSL G HFCGG++I+ QW+V+AAHC S+I V L
Sbjct: 8 KIVGGYTCAANSIPYQVSLNS-GSHFCGGSLINSQWVVSAAHCY--------KSRIQVRL 58
Query: 176 KEH--DLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
EH D+ + + +I+ HP+ + ++ +NDI L++L+ + + LP S
Sbjct: 59 GEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPR-SC 117
Query: 234 DYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMC 293
+ ++GWG N S ++LQ + V+S+ C++ Y + + + +C
Sbjct: 118 AAAGTECLISGWG--NTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQ-----ITGNMIC 170
Query: 294 AGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVI 353
G +GGKD+C Q DSGGP++ G Q+
Sbjct: 171 VGFLEGGKDSC------------------------------QGDSGGPVVCNG----QLQ 196
Query: 354 GLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 197 GIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 228
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 5 ILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES 64
+LQ + V+S+ C++ Y + + + +C G +GGKD+C DSGGP++ G
Sbjct: 142 LLQCLKAPVLSDSSCKSSYPGQ-----ITGNMICVGFLEGGKDSCQGDSGGPVVCNG--- 193
Query: 65 TQVIGLVSTGIG 76
Q+ G+VS G G
Sbjct: 194 -QLQGIVSWGYG 204
>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic
Trypsinogen-Bpti Complex
Length = 231
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 130/269 (48%), Gaps = 53/269 (19%)
Query: 119 GGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLKEH 178
GG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L EH
Sbjct: 11 GGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRLGEH 61
Query: 179 DLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDYS 236
+++ + V +I+ HP+ + NNDI L++L+ ++ + + LPS
Sbjct: 62 NINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAG 121
Query: 237 EQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH 296
Q + ++GWG N S ++LQ + ++ C+A Y + + ++ +C G
Sbjct: 122 TQCL-ISGWG--NTLSSGVNEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGF 173
Query: 297 EQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGLV 356
+GGKD+C Q DSGGP++ G ++ G+V
Sbjct: 174 LEGGKDSC------------------------------QGDSGGPVVCNG----ELQGIV 199
Query: 357 STGIGCARPRLPGLYTRLTRYIGWISDTL 385
S G GCA P PG+YT++ Y+ WI DT+
Sbjct: 200 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 228
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
++LQ + ++ C+A Y + + ++ +C G +GGKD+C DSGGP++
Sbjct: 138 NEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGFLEGGKDSCQGDSGGPVVCN 192
Query: 61 GAESTQVIGLVSTGIG 76
G ++ G+VS G G
Sbjct: 193 G----ELQGIVSWGYG 204
>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex
With Bovine Pancreatic Trypsin Inhibitor
pdb|2STA|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (Cucurbita Maxima Trypsin Inhibitor I)
pdb|2STB|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (cucurbita Pepo Trypsin Inhibitor Ii)
Length = 222
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 132/271 (48%), Gaps = 54/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P P VSL G HFCGG++++E W+V+AAHC S++ V L
Sbjct: 1 IVGGYECKPYSQPHQVSLNS-GYHFCGGSLVNENWVVSAAHCY--------KSRVEVRLG 51
Query: 177 EHDL--SRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH++ + S + R++ HP++S + +NDI L++L++ + ++P LP+ S
Sbjct: 52 EHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPT-SCA 110
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
+ TV+GWG T S SN LQ + + ++S C Y + + CA
Sbjct: 111 PAGTMCTVSGWGNT---MSSTADSNKLQCLNIPILSYSDCNNSYPGM-----ITNAMFCA 162
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G+ +GGKD+C Q DSGGP++ G ++ G
Sbjct: 163 GYLEGGKDSC------------------------------QGDSGGPVVCNG----ELQG 188
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA P PG+Y ++ + W++ T+
Sbjct: 189 VVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
SN LQ + + ++S C Y + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 131 SNKLQCLNIPILSYSDCNNSYPGM-----ITNAMFCAGYLEGGKDSCQGDSGGPVVCNG- 184
Query: 63 ESTQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 185 ---ELQGVVSWGYG 195
>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|2CGA|B Chain B, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|1ACB|E Chain E, Crystal And Molecular Structure Of The Bovine
Alpha-Chymotrypsin-Eglin C Complex At 2.0 Angstroms
Resolution
pdb|1CGI|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1CGJ|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1EX3|A Chain A, Crystal Structure Of Bovine Chymotrypsinogen A
(Tetragonal)
pdb|1GL1|A Chain A, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|B Chain B, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|C Chain C, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL0|E Chain E, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-D2v, An Inhibitor From The Insect Locusta
Migratoria
pdb|1K2I|1 Chain 1, Crystal Structure Of Gamma-Chymotrypsin In Complex With 7-
Hydroxycoumarin
pdb|1P2M|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2M|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OXG|A Chain A, Crystal Structure Of A Complex Formed Between Organic
Solvent Treated Bovine Alpha-Chymotrypsin And Its
Autocatalytically Produced Highly Potent 14-Residue
Peptide At 2.2 Resolution
pdb|1T7C|A Chain A, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T7C|C Chain C, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|A Chain A, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|C Chain C, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|A Chain A, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|C Chain C, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|A Chain A, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|C Chain C, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|A Chain A, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|C Chain C, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1CHG|A Chain A, Chymotrypsinogen,2.5 Angstroms Crystal Structure,
Comparison With Alpha-Chymotrypsin,And Implications For
Zymogen Activation
pdb|1GCD|A Chain A, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2Y6T|A Chain A, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|B Chain B, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|C Chain C, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|D Chain D, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|3T62|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|B Chain B, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|C Chain C, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
Length = 245
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 130/272 (47%), Gaps = 46/272 (16%)
Query: 116 KIVGGLAANPGEFPWIVSLK-RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVT 174
+IV G A PG +PW VSL+ + G HFCGG++I+E W+VTAAHC + A +
Sbjct: 15 RIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTTSDVVVAGEF--- 71
Query: 175 LKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
+ S I + + ++ + ++ + NNDI LL+L+ + +S + CLPS S D
Sbjct: 72 --DQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDD 129
Query: 235 YSEQSVTV-AGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMC 293
++ + V GWG T + + LQ+ +L ++SN C+ ++ G KI K++ +C
Sbjct: 130 FAAGTTCVTTGWGLTRY--TNANTPDRLQQASLPLLSNTNCKKYW---GTKI--KDAMIC 182
Query: 294 AGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVI 353
AG G +C DSGGPL+ + ++
Sbjct: 183 AGAS--GVSSC------------------------------MGDSGGPLVCKKNGAWTLV 210
Query: 354 GLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+VS G PG+Y R+T + W+ TL
Sbjct: 211 GIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 242
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
LQ+ +L ++SN C+ ++ G KI K++ +CAG G +C DSGGPL+ +
Sbjct: 155 LQQASLPLLSNTNCKKYW---GTKI--KDAMICAGAS--GVSSCMGDSGGPLVCKKNGAW 207
Query: 66 QVIGLVSTG 74
++G+VS G
Sbjct: 208 TLVGIVSWG 216
>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A
Engineered Mutant Trypsin Inhibitor
Length = 223
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 127/270 (47%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++ NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSNTLNNDIMLIKLKSAASLNSRVASVSLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ C++ Y + + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKD+C Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDSC------------------------------QGDSGGPVVCAG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 VSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++L+ + ++S+ C++ Y + + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAGYLEGGKDSCQGDSGGPVVCAG-- 185
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 186 --KLQGIVSWGSG 196
>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5A|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5B|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5U|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
Length = 223
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 127/270 (47%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ C++ Y + + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKD+C Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDSC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 VSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++L+ + ++S+ C++ Y + + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAGYLEGGKDSCQGDSGGPVVCSG-- 185
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 186 --KLQGIVSWGSG 196
>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
pdb|1DLK|D Chain D, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
Length = 230
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 129/271 (47%), Gaps = 46/271 (16%)
Query: 117 IVGGLAANPGEFPWIVSLK-RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
IV G A PG +PW VSL+ + G HFCGG++I+E W+VTAAHC + A +
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTTSDVVVAGEF---- 56
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
+ S I + + ++ + ++ + NNDI LL+L+ + +S + CLPS S D+
Sbjct: 57 -DQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDF 115
Query: 236 SEQSVTV-AGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
+ + V GWG T + + LQ+ +L ++SN C+ ++ G KI K++ +CA
Sbjct: 116 AAGTTCVTTGWGLTRY--TNANTPDRLQQASLPLLSNTNCKKYW---GTKI--KDAMICA 168
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G G +C DSGGPL+ + ++G
Sbjct: 169 GAS--GVSSC------------------------------MGDSGGPLVCKKNGAWTLVG 196
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G PG+Y R+T + W+ TL
Sbjct: 197 IVSWGSSTCSTSTPGVYARVTALVNWVQQTL 227
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
LQ+ +L ++SN C+ ++ G KI K++ +CAG G +C DSGGPL+ +
Sbjct: 140 LQQASLPLLSNTNCKKYW---GTKI--KDAMICAGAS--GVSSCMGDSGGPLVCKKNGAW 192
Query: 66 QVIGLVSTG 74
++G+VS G
Sbjct: 193 TLVGIVSWG 201
>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 243
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 51/271 (18%)
Query: 116 KIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVT 174
KIVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 20 KIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVV 78
Query: 175 LKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
S S V HPS++ ++ NNDI L++L + + + LP+
Sbjct: 79 EGNEQFISASKSIV-------HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS 131
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++L+ + ++S+ C++ Y + + + CA
Sbjct: 132 AGTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCA 183
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G+ +GGKD+C Q D+GGP++ G ++ G
Sbjct: 184 GYLEGGKDSC------------------------------QGDAGGPVVCSG----KLQG 209
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 210 IVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 240
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++L+ + ++S+ C++ Y + + + CAG+ +GGKD+C D+GGP++ G
Sbjct: 153 DVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAGYLEGGKDSCQGDAGGPVVCSG-- 205
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 206 --KLQGIVSWGSG 216
>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar
Spermatozoa
Length = 263
Score = 117 bits (294), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 130/285 (45%), Gaps = 53/285 (18%)
Query: 117 IVGGLAANPGEFPWIVSLK------RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQ 170
+VGG++A PG +PW+VSL+ H CGG +++ W++TAAHC N
Sbjct: 1 VVGGMSAEPGAWPWMVSLQIFMYHNNRRYHTCGGILLNSHWVLTAAHCFKNKKKVTDWRL 60
Query: 171 I----NVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPA 226
I V + +P + V I+ H + NDIAL+++T + I P
Sbjct: 61 IFGANEVVWGSNKPVKPPLQERFVEEIIIHEKYVSGLEINDIALIKITPPVPCGPFIGPG 120
Query: 227 CLP--SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQA--WYQSEG 282
CLP + Q+ V GWG+ E R S LQ+ ++++ ++C + WY
Sbjct: 121 CLPQFKAGPPRAPQTCWVTGWGYLKE--KGPRTSPTLQEARVALIDLELCNSTRWYNGR- 177
Query: 283 KKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPL 342
++ + +CAG+ +G D C Q DSGGPL
Sbjct: 178 ----IRSTNVCAGYPRGKIDTC------------------------------QGDSGGPL 203
Query: 343 MLLG-AEST-QVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
M AE+T V+G+ S G+GCAR + PG+YT Y+ WI+ +
Sbjct: 204 MCRDRAENTFVVVGITSWGVGCARAKRPGVYTSTWPYLNWIASKI 248
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 1 RRSNILQKVALSVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLM 58
R S LQ+ ++++ ++C + WY ++ + +CAG+ +G D C DSGGPLM
Sbjct: 150 RTSPTLQEARVALIDLELCNSTRWYNGR-----IRSTNVCAGYPRGKIDTCQGDSGGPLM 204
Query: 59 LLG-AEST-QVIGLVSTGIG 76
AE+T V+G+ S G+G
Sbjct: 205 CRDRAENTFVVVGITSWGVG 224
>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 231
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 130/269 (48%), Gaps = 53/269 (19%)
Query: 119 GGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLKEH 178
GG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L EH
Sbjct: 11 GGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRLGEH 61
Query: 179 DLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDYS 236
+++ + V +I+ HP+ + NNDI L++L+ ++ + + LPS
Sbjct: 62 NINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAG 121
Query: 237 EQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH 296
Q + ++GWG N S ++L+ + ++ C+A Y + + ++ +C G
Sbjct: 122 TQCL-ISGWG--NTLSSGVNEPDLLKCLDAPLLPQADCEASYPGK-----ITDNMVCVGF 173
Query: 297 EQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGLV 356
+GGKD+C Q DSGGP++ G ++ G+V
Sbjct: 174 LEGGKDSC------------------------------QGDSGGPVVCNG----ELQGIV 199
Query: 357 STGIGCARPRLPGLYTRLTRYIGWISDTL 385
S G GCA P PG+YT++ Y+ WI DT+
Sbjct: 200 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 228
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
++L+ + ++ C+A Y + + ++ +C G +GGKD+C DSGGP++
Sbjct: 138 NEPDLLKCLDAPLLPQADCEASYPGK-----ITDNMVCVGFLEGGKDSCQGDSGGPVVCN 192
Query: 61 GAESTQVIGLVSTGIG 76
G ++ G+VS G G
Sbjct: 193 G----ELQGIVSWGYG 204
>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk
Type Protease Inhibitor And Its Interaction With Trypsin
pdb|1TPA|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2PTC|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1PPC|E Chain E, Geometry Of Binding Of The Benzamidine-and Arginine-based
Inhibitors
N-alpha-(2-naphthyl-sulphonyl-glycyl)-dl-p-
amidinophenylalanyl- Piperidine (napap) And
(2r,4r)-4-methyl-1-[n-alpha-(3-methyl-1,2,3,4-
Tetrahydro-8-quinolinesulphonyl)-l-arginyl]-2-piperidine
Carboxylic Acid (mqpa) To Human Alpha-thrombin: X-ray
Crystallographic Determination Of The Napap-trypsin
Complex And Modeling Of Napap- Thrombin And
Mqpa-thrombin
pdb|1PPE|E Chain E, The Refined 2.0 Angstroms X-Ray Crystal Structure Of The
Complex Formed Between Bovine Beta-Trypsin And Cmti-I, A
Trypsin Inhibitor From Squash Seeds (Cucurbita Maxima):
Topological Similarity Of The Squash Seed Inhibitors
With The Carboxypeptidase A Inhibitor From Potatoes
pdb|1PPH|E Chain E, Geometry Of Binding Of The Nalpha-Tosylated Piperidides Of
M-Amidino-, P-Amidino-And P-Guanidino Phenylalanine To
Thrombin And Trypsin: X- Ray Crystal Structures Of Their
Trypsin Complexes And Modeling Of Their Thrombin
Complexes
pdb|1SMF|E Chain E, Studies On An Artificial Trypsin Inhibitor Peptide Derived
From The Mung Bean Inhibitor
pdb|1JRT|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1JRS|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1CE5|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzamidine
pdb|2BZA|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzylamine
pdb|1QCP|A Chain A, Crystal Structure Of The Rwj-51084 Bovine Pancreatic Beta-
Trypsin At 1.8 A
pdb|1SBW|A Chain A, Crystal Structure Of Mung Bean Inhibitor Lysine Active
Fragment Complex With Bovine Beta-Trypsin At 1.8a
Resolution
pdb|1YYY|1 Chain 1, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1SFI|A Chain A, High Resolution Structure Of A Potent, Cyclic Protease
Inhibitor From Sunflower Seeds
pdb|1TIO|A Chain A, High Packing Density Form Of Bovine Beta-trypsin In
Cyclohexane
pdb|2TIO|A Chain A, Low Packing Density Form Of Bovine Beta-Trypsin In
Cyclohexane
pdb|2BTC|E Chain E, Bovine Trypsin In Complex With Squash Seed Inhibitor
(Cucurbita Pepo Trypsin Inhibitor Ii)
pdb|3BTE|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta-Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTD|E Chain E, The Crystal Structures Of The Complexes Between The Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTF|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTG|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTH|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTK|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTM|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTQ|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTT|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTW|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|1QBN|A Chain A, Bovine Trypsin 2-[amino(Imino)methyl]-2-Hydroxyphenoxy]-6-
[3-(4,5-Dihydro-1h-Imidazol-2-Yl)phenoxy]pyridine-4-
Carboxylic Acid (Zk-806688) Complex
pdb|1QBO|A Chain A, Bovine Trypsin
7-[[6-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
2-Methyl-Benzimidazol-1-Yl]methyl]naphthalene-2-
Carboximidamid Zk-806711 Inhibitor Complex
pdb|1QB9|A Chain A, Bovine Trypsin
7-[[2-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
9h-Carbozol-9-Yl] Methyl]naphthalene-2-Carboximidamide
(Zk- 806450) Complex
pdb|1QB1|A Chain A, Bovine Trypsin With 1-[2-[5-[amino(imino)methyl]-2-
Hydroxyphenoxy]-6-[3-(4,
5-dihydro-1-methyl-1h-imidazol-2-
Yl)phenoxy]pyridin-4-yl]piperidine-3-carboxylic Acid
(zk- 806974)
pdb|1QB6|A Chain A, Bovine Trypsin 3,3'-[3,5-Difluoro-4-Methyl-2, 6-
Pyridinediylbis(Oxy)]bis(Benzenecarboximidamide) (Zk-
805623) Complex
pdb|1QA0|A Chain A, Bovine Trypsin 2-Aminobenzimidazole Complex
pdb|1F2S|E Chain E, Crystal Structure Of The Complex Formed Between Bovine
Beta- Trypsin And Mcti-A, A Trypsin Inhibitor Of Squash
Family At 1.8 A Resolution
pdb|1D6R|A Chain A, Crystal Structure Of Cancer Chemopreventive Bowman-Birk
Inhibitor In Ternary Complex With Bovine Trypsin At 2.3
A Resolution. Structural Basis Of Janus-Faced Serine
Protease Inhibitor Specificity
pdb|1C9T|A Chain A, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|B Chain B, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|C Chain C, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|D Chain D, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|E Chain E, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|F Chain F, Complex Of Bdellastasin With Bovine Trypsin
pdb|1QL7|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1QL8|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1G9I|E Chain E, Crystal Structure Of Beta-Trysin Complex In Cyclohexane
pdb|1EJM|A Chain A, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|C Chain C, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|E Chain E, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1JIR|A Chain A, Crystal Structure Of Trypsin Complex With Amylamine In
Cyclohexane
pdb|1J8A|A Chain A, Crystal Structure Of Benzamidine Inhibited Bovine
Pancreatic Trypsin At 105k To 1.21a Resolution From
Laboratory Source With High Number Of Waters Modelled
pdb|1G36|A Chain A, Trypsin Inhibitor Complex
pdb|1K1P|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1O|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1N|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1M|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1L|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1J|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1I|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1EB2|A Chain A, Trypsin Inhibitor Complex (Bpo)
pdb|1GJ6|A Chain A, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1N6X|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1N6Y|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1OYQ|A Chain A, Trypsin Inhibitor Complex
pdb|1O2H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O2O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2P|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Q|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2R|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2S|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2T|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2U|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2V|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2W|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2X|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Y|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Z|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O30|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O31|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O32|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O33|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O34|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O35|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O36|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O37|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O38|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O39|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3A|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3B|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3C|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3D|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3E|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3F|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3G|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O3N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1NC6|A Chain A, Potent, Small Molecule Inhibitors Of Human Mast Cell
Tryptase. Anti-Asthmatic Action Of A Dipeptide-Based
Transition State Analogue Containing Benzothiazole
Ketone
pdb|1P2I|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2J|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2K|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OX1|A Chain A, Crystal Structure Of The Bovine Trypsin Complex With A
Synthetic 11 Peptide Inhibitor
pdb|1RXP|A Chain A, Structure Of Trypsin (Orthorhombic) With 1-(4-Tert-
Butylcarbamoyl- Piperazine-1-Carbonyl)-3-(3-Guanidino-
Propyl)-4-Oxo-Azetidine-2-Carboxylic Acid
pdb|1S0Q|A Chain A, Native Bovine Pancreatic Trypsin
pdb|1S0R|A Chain A, Bovine Pancreatic Trypsin Inhibited With Benzamidine At
Atomic Resolution
pdb|2A7H|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|1TX7|A Chain A, Bovine Trypsin Complexed With P-
Amidinophenylmethylphosphinic Acid (Ampa)
pdb|2BLV|A Chain A, Trypsin Before A High Dose X-Ray "burn"
pdb|2BLW|A Chain A, Trypsin After A High Dose X-Ray "burn"
pdb|1TX8|A Chain A, Bovine Trypsin Complexed With Amso
pdb|1Y3U|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3V|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3W|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3X|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3Y|A Chain A, Trypsin Inhibitor Complex
pdb|1YP9|A Chain A, Trypsin Inhibitor Complex
pdb|2AYW|A Chain A, Crystal Structure Of The Complex Formed Between Trypsin
And A Designed Synthetic Highly Potent Inhibitor In The
Presence Of Benzamidine At 0.97 A Resolution
pdb|2FI3|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser,
Cys38->ser) In Complex With Trypsin
pdb|2FX4|A Chain A, Bovine Trypsin Bound By 4-piperidinebutyrate To Make
Acylenzyme Complex
pdb|2FX6|A Chain A, Bovine Trypsin Complexed With 2-Aminobenzamidazole
pdb|2AGE|X Chain X, Succinyl-Aapr-Trypsin Acyl-Enzyme At 1.15 A Resolution
pdb|2AGG|X Chain X, Succinyl-Aapk-Trypsin Acyl-Enzyme At 1.28 A Resolution
pdb|2AGI|X Chain X, The Leupeptin-Trypsin Covalent Complex At 1.14 A
Resolution
pdb|2AH4|X Chain X, Guanidinobenzoyl-Trypsin Acyl-Enzyme At 1.13 A Resolution
pdb|2G5N|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G5V|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G8T|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2F3C|E Chain E, Crystal Structure Of Infestin 1, A Kazal-Type
Serineprotease Inhibitor, In Complex With Trypsin
pdb|2G81|E Chain E, Crystal Structure Of The Bowman-Birk Inhibitor From Vigna
Unguiculata Seeds In Complex With Beta-Trypsin At 1.55
Angstrons Resolution
pdb|2G55|A Chain A, Anomalous Substructure Of Trypsin (P3121)
pdb|2OTV|A Chain A, Crystal Structure Of The Complex Formed Between Bovine
Trypsin And Nicotinamide At 1.56 A Resolution
pdb|2J9N|A Chain A, Robotically Harvested Trypsin Complexed With Benzamidine
Containing Polypeptide Mediated Crystal Contacts
pdb|2OXS|A Chain A, Crytal Structure Of The Trypsin Complex With Benzamidine
At High Temperature (35 C)
pdb|2UUY|A Chain A, Structure Of A Tick Tryptase Inhibitor In Complex With
Bovine Trypsin
pdb|2ILN|A Chain A, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2ILN|B Chain B, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2CMY|A Chain A, Crystal Complex Between Bovine Trypsin And Veronica
Hederifolia Trypsin Inhibitor
pdb|1AQ7|A Chain A, Trypsin With Inhibitor Aeruginosin 98-b
pdb|1AUJ|A Chain A, Bovine Trypsin Complexed To Meta-Cyano-Benzylic Inhibitor
pdb|1AZ8|A Chain A, Bovine Trypsin Complexed To Bis-Phenylamidine Inhibitor
pdb|1BJU|A Chain A, Beta-Trypsin Complexed With Acpu
pdb|1BJV|A Chain A, Beta-Trypsin Complexed With Appu
pdb|1GBT|A Chain A, Structure Of An Acyl-Enzyme Intermediate During Catalysis:
(Guanidinobenzoyl) Trypsin
pdb|1MAX|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MAY|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MTS|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTU|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTV|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTW|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1TLD|A Chain A, Crystal Structure Of Bovine Beta-Trypsin At 1.5 Angstroms
Resolution In A Crystal Form With Low Molecular Packing
Density. Active Site Geometry, Ion Pairs And Solvent
Structure
pdb|1TPO|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPP|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPS|A Chain A, Atomic Structure Of The Trypsin-A90720a Complex: A Unified
Approach To Structure And Function
pdb|1TYN|A Chain A, Atomic Structure Of The Trypsin-cyclotheonamide A Complex:
Lessons For The Design Of Serine Protease Inhibitors
pdb|1XUF|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUG|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUH|A Chain A, Trypsin-Keto-Babim-Co+2, Ph 8.2
pdb|1XUI|A Chain A, Trypsin-Keto-Babim, Zn+2-Free, Ph 8.2
pdb|1XUJ|A Chain A, Trypsin-Keto-Babim-Zn+2, Ph 8.2
pdb|1XUK|A Chain A, Trypsin-Babim-Sulfate, Ph 5.9
pdb|2PLX|A Chain A, Trypsin Complexed To A Synthetic Peptide From Veronica
Hederifolia
pdb|2PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3PTB|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|3PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1C1N|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1O|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1P|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1Q|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1R|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1T|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2D|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2E|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2F|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2G|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2H|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2I|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2J|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2K|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2L|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2M|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5P|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Q|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5R|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5S|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5T|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5U|A Chain A, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5V|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GHZ|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI0|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI1|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI2|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI3|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI4|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI5|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI6|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2O9Q|A Chain A, The Crystal Structure Of Bovine Trypsin Complexed With A
Small Inhibition Peptide Orb2k
pdb|2QN5|T Chain T, Crystal Structure And Functional Study Of The Bowman-Birk
Inhibitor From Rice Bran In Complex With Bovine Trypsin
pdb|2QYI|A Chain A, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2QYI|C Chain C, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2ZDK|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDL|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDM|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDN|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFS|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFT|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZHD|A Chain A, Exploring Trypsin S3 Pocket
pdb|3D65|E Chain E, Crystal Structure Of Textilinin-1, A Kunitz-Type Serine
Protease Inhibitor From The Australian Common Brown
Snake Venom, In Complex With Trypsin
pdb|3E8L|A Chain A, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|3E8L|B Chain B, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|2ZQ1|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZQ2|A Chain A, Exploring Trypsin S3 Pocket
pdb|3ITI|A Chain A, Structure Of Bovine Trypsin With The Mad Triangle B3c
pdb|3GY2|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY3|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY4|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY5|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY6|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Bis-Benzamidines Diminazene And Pentamidine
pdb|3GY7|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY8|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3AAS|A Chain A, Bovine Beta-Trypsin Bound To Meta-Guanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAU|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diguanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|B Chain B, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3M35|A Chain A, Trypsin In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3MFJ|A Chain A, Bovine Trypsin At 0.8 A Resolution, Restrained Refinement
pdb|3MI4|A Chain A, Bovine Trypsin At 0.8 A Resolution, Non-Restrained
Refinemen
pdb|3I29|A Chain A, Crystal Structure Of A Binary Complex Between An Mutant
Tryp Inhibitor With Bovine Trypsin
pdb|3A7T|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide
pdb|3A7V|A Chain A, Crystal Structure Of Trypsin Complexed With
3-Formylbenzimidamide
pdb|3A7W|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((Tetrahydro-2h-
Pyran-2-Yloxyimino)methyl)benzimidamide (Soaking 4hours)
pdb|3A7X|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
45seconds)
pdb|3A7Y|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
3-Yloxyimino)methyl)benzimidamide (Soaking 2hours)
pdb|3A7Z|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
4-Yloxyimino)methyl)benzimidamide (Soaking 3hours)
pdb|3A80|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic Acid
(Soaking 40seconds)
pdb|3A81|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 8
Hours)
pdb|3A82|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid
pdb|3A83|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide
pdb|3A84|A Chain A, Crystal Structure Of Trypsin Complexed With(E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 5
Seconds)
pdb|3A85|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 15
Seconds)
pdb|3A86|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 30
Seconds)
pdb|3A87|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 5
Minutes)
pdb|3A88|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 30
Minutes)
pdb|3A89|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 4
Hours)
pdb|3A8A|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide And Aniline
pdb|3A8B|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((4-
Bromophenylimino)methyl)benzimidamide
pdb|3A8C|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
With Mixture Of
[(E)-2-(4-Carbamimidoylbenzylideneaminooxy)acetic Acid]
And [(E)-2-
(4-Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic
Acid])
pdb|3A8D|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Under
Aniline-Free Condition)
pdb|3LJJ|A Chain A, Bovine Trypsin In Complex With Ub-Thr 10
pdb|3LJO|A Chain A, Bovine Trypsin In Complex With Ub-Thr 11
pdb|2XTT|B Chain B, Bovine Trypsin In Complex With Evolutionary Enhanced
Schistocerca Gregaria Protease Inhibitor 1 (Sgpi-1-P02)
pdb|3NK8|A Chain A, Trypsin In Complex With Fluorine-Containing Fragment
pdb|3NKK|A Chain A, Trypsin In Complex With Fluorine Containing Fragment
pdb|3M7Q|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Pancreatic Trypsin
pdb|3RDZ|A Chain A, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3RDZ|B Chain B, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3ATI|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3ATK|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3ATL|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamidine
pdb|3ATM|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXA|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3RXB|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobutanoic Acid
pdb|3RXC|A Chain A, Crystal Structure Of Trypsin Complexed With
2-Aminopyridine
pdb|3RXD|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3RXE|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide
pdb|3RXF|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminopyridine
pdb|3RXG|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminocyclohexanol
pdb|3RXH|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Imidazol-4-Yl) Ethanamine
pdb|3RXI|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXJ|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobenzoic Acid
pdb|3RXK|A Chain A, Crystal Structure Of Trypsin Complexed With Methyl
4-Amino-1-Methyl- Pyrrolidine-2-Carboxylate
pdb|3RXL|A Chain A, Crystal Structure Of Trypsin Complexed With
(2,5-Dimethyl-3-Furyl) Methanamine
pdb|3RXM|A Chain A, Crystal Structure Of Trypsin Complexed With
[2-(2-Thienyl)thiazol-4- Yl]methanamine
pdb|3RXO|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Pyrrol-1-Ylphenyl) Methanamine
pdb|3RXP|A Chain A, Crystal Structure Of Trypsin Complexed With
(1,5-Dimethylpyrazol-3- Yl)methanamine
pdb|3RXQ|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F01
And F05, Cocktail Experiment)
pdb|3RXR|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine (F01 And F03, Cocktail Experiment)
pdb|3RXS|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine (F04 And A06, Cocktail
Experiment)
pdb|3RXT|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamin (F04 And F03, Cocktail
Experiment)
pdb|3RXU|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And A06, Cocktail Experiment)
pdb|3RXV|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And F03, Cocktail Experiment)
pdb|3T25|A Chain A, Tmao-Grown Orthorhombic Trypsin (Bovine)
pdb|3T26|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Sarcosine
pdb|3T27|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Betaine
pdb|3T28|A Chain A, Tmao-Grown Trypsin (Bovine)-Previously Unreported
Tetragonal Crystal Form
pdb|3T29|A Chain A, Tmao-Grown Trigonal Trypsin (Bovine)
pdb|4AB8|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4AB9|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABA|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABB|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABD|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABE|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABF|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABG|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABH|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABI|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Pta)sfti-1(1,14), That Was 1,4-
Disubstituted With A 1,2,3-Trizol To Mimic A Trans Amide
Bond
pdb|4ABJ|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Ica)sfti-1(1,14), That Was 1,5-
Disubstituted With 1,2,3-Trizol To Mimic A Cis Amide
Bond
pdb|3VPK|A Chain A, Crystal Structure Of 6-guanidinohexanoyl Trypsin
pdb|3UNR|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Trypsin At 1.2a Resolution
pdb|3RU4|T Chain T, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
pdb|1C1S|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|4I8G|A Chain A, Bovine Trypsin At 0.8 Resolution
pdb|4I8H|A Chain A, Bovine Trypsin At 0.75 Resolution
pdb|4I8J|A Chain A, Bovine Trypsin At 0.87 A Resolution
pdb|4I8K|A Chain A, Bovine Trypsin At 0.85 Resolution
pdb|4I8L|A Chain A, Bovine Trypsin At 0.87 Resolution
pdb|4AOQ|A Chain A, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|B Chain B, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|C Chain C, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOR|A Chain A, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|B Chain B, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|C Chain C, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
Length = 223
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 127/270 (47%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++ NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ C++ Y + + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKD+C Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDSC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 VSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++L+ + ++S+ C++ Y + + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAGYLEGGKDSCQGDSGGPVVCSG-- 185
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 186 --KLQGIVSWGSG 196
>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon
Length = 220
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 131/271 (48%), Gaps = 54/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P VSL G HFCGG++++E W+V+AAHC S++ V L
Sbjct: 1 IVGGYECKAYSQPHQVSLNS-GYHFCGGSLVNENWVVSAAHCY--------KSRVEVRLG 51
Query: 177 EHDL--SRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH++ + S + R++ HP++S + +NDI L++L++S + ++P LPS S
Sbjct: 52 EHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKSATLNTYVQPVALPS-SCA 110
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
+ TV+GWG T S N LQ + + ++S C Y + + CA
Sbjct: 111 PAGTMCTVSGWGNT---MSSTADKNKLQCLNIPILSYSDCNNSYPGM-----ITNAMFCA 162
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G+ +GGKD+C Q DSGGP++ G ++ G
Sbjct: 163 GYLEGGKDSC------------------------------QGDSGGPVVCNG----ELQG 188
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA P PG+Y ++ + W++ T+
Sbjct: 189 VVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
N LQ + + ++S C Y + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 132 NKLQCLNIPILSYSDCNNSYPGM-----ITNAMFCAGYLEGGKDSCQGDSGGPVVCNG-- 184
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 185 --ELQGVVSWGYG 195
>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1TFX|B Chain B, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1LDT|T Chain T, Complex Of Leech-Derived Tryptase Inhibitor With Porcine
Trypsin
pdb|1AVW|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Orthorhombic Crystal Form
pdb|1AVX|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Tetragonal Crystal Form
pdb|1EJA|A Chain A, Structure Of Porcine Trypsin Complexed With Bdellastasin,
An Antistasin-Type Inhibitor
pdb|1S5S|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S6F|A Chain A, Porcine Trypsin Covalent Complex With Borate And
Guanidine- 3 Inhibitor
pdb|1S6H|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S81|A Chain A, Porcine Trypsin With No Inhibitor Bound
pdb|1S82|A Chain A, Porcine Trypsin Complexed With Borate And Ethylene Glycol
pdb|1S83|A Chain A, Porcine Trypsin Complexed With 4-amino Propanol
pdb|1S84|A Chain A, Porcine Trypsin Covalent Complex With 4-Amino Butanol,
Borate And Ethylene Glycol
pdb|1S85|A Chain A, Porcine Trypsin Complexed With P-Hydroxymethyl Benzamidine
And Borate
pdb|1H9I|E Chain E, Complex Of Eeti-Ii Mutant With Porcine Trypsin
pdb|1V6D|A Chain A, The Crystal Structure Of The Trypsin Complex With
Synthetic Heterochiral Peptide
pdb|1TX6|A Chain A, Trypsin:bbi Complex
pdb|1TX6|B Chain B, Trypsin:bbi Complex
pdb|1TX6|C Chain C, Trypsin:bbi Complex
pdb|1TX6|D Chain D, Trypsin:bbi Complex
pdb|1Z7K|A Chain A, Crystal Structure Of Trypsin- Ovomucoid Turkey Egg White
Inhibitor Complex
pdb|1YF4|A Chain A, Crystal Structure Of Trypsin-Vasopressin Complex
Length = 223
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 129/271 (47%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC S+I V L
Sbjct: 1 IVGGYTCAANSIPYQVSLNS-GSHFCGGSLINSQWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EH--DLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH D+ + + +I+ HP+ + ++ +NDI L++L+ + + LP S
Sbjct: 52 EHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPR-SCA 110
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
+ ++GWG N S ++LQ + V+S+ C++ Y + + + +C
Sbjct: 111 AAGTECLISGWG--NTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQ-----ITGNMICV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q DSGGP++ G Q+ G
Sbjct: 164 GFLEGGKDSC------------------------------QGDSGGPVVCNG----QLQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 190 IVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 5 ILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES 64
+LQ + V+S+ C++ Y + + + +C G +GGKD+C DSGGP++ G
Sbjct: 134 LLQCLKAPVLSDSSCKSSYPGQ-----ITGNMICVGFLEGGKDSCQGDSGGPVVCNG--- 185
Query: 65 TQVIGLVSTGIG 76
Q+ G+VS G G
Sbjct: 186 -QLQGIVSWGYG 196
>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
pdb|3MYW|B Chain B, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
Length = 223
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 129/271 (47%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC S+I V L
Sbjct: 1 IVGGYTCAANSVPYQVSLNS-GSHFCGGSLINSQWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EH--DLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH D+ + + +I+ HP+ + ++ +NDI L++L+ + + LP S
Sbjct: 52 EHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPR-SCA 110
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
+ ++GWG N S ++LQ + V+S+ C++ Y + + + +C
Sbjct: 111 AAGTECLISGWG--NTKSSGSSYPSLLQCLKAPVLSDSSCKSAYPGQ-----ITGNMICV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q DSGGP++ G Q+ G
Sbjct: 164 GFLEGGKDSC------------------------------QGDSGGPVVCNG----QLQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 190 IVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 5 ILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES 64
+LQ + V+S+ C++ Y + + + +C G +GGKD+C DSGGP++ G
Sbjct: 134 LLQCLKAPVLSDSSCKSAYPGQ-----ITGNMICVGFLEGGKDSCQGDSGGPVVCNG--- 185
Query: 65 TQVIGLVSTGIG 76
Q+ G+VS G G
Sbjct: 186 -QLQGIVSWGYG 196
>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17
Complexed With Bovine Pancreatic Trypsin Inhibitor
(Bpti)
Length = 231
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 130/269 (48%), Gaps = 53/269 (19%)
Query: 119 GGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLKEH 178
GG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L EH
Sbjct: 11 GGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRLGEH 61
Query: 179 DLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDYS 236
+++ + V +I+ HP+ + NNDI L++L+ ++ + + LPS
Sbjct: 62 NINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAG 121
Query: 237 EQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH 296
Q + ++GWG N S ++LQ + ++ C+A Y + + ++ +C G
Sbjct: 122 TQCL-ISGWG--NTLSSGVNEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGF 173
Query: 297 EQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGLV 356
+GGKD+C Q +SGGP++ G ++ G+V
Sbjct: 174 LEGGKDSC------------------------------QGNSGGPVVCNG----ELQGIV 199
Query: 357 STGIGCARPRLPGLYTRLTRYIGWISDTL 385
S G GCA P PG+YT++ Y+ WI DT+
Sbjct: 200 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 228
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
++LQ + ++ C+A Y + + ++ +C G +GGKD+C +SGGP++
Sbjct: 138 NEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGFLEGGKDSCQGNSGGPVVCN 192
Query: 61 GAESTQVIGLVSTGIG 76
G ++ G+VS G G
Sbjct: 193 G----ELQGIVSWGYG 204
>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In
Complex With Trypsin
pdb|2FTL|E Chain E, Crystal Structure Of Trypsin Complexed With Bpti At 100k
Length = 223
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 126/270 (46%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++ NNDI L++L + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSNTLNNDIMLIKLKSAASLXSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ C++ Y + + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKD+C Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDSC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 VSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++L+ + ++S+ C++ Y + + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAGYLEGGKDSCQGDSGGPVVCSG-- 185
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 186 --KLQGIVSWGSG 196
>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi
pdb|1ZR0|A Chain A, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
pdb|1ZR0|C Chain C, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
Length = 223
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 126/270 (46%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++ NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S C++ Y + + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSTSSCKSAYPGQ-----ITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKD+C Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDSC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 VSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++L+ + ++S C++ Y + + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 133 DVLKCLKAPILSTSSCKSAYPGQ-----ITSNMFCAGYLEGGKDSCQGDSGGPVVCSG-- 185
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 186 --KLQGIVSWGSG 196
>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
pdb|3T2N|B Chain B, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
Length = 372
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 142/309 (45%), Gaps = 58/309 (18%)
Query: 100 IAGVPCGRSLAS------RR---TGKIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQ 150
+ P GR LA+ RR +IVGG + G +PW VSL+ G H CGG+++
Sbjct: 92 VCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGD 151
Query: 151 WIVTAAHCLCNGPSPLSASQINVTLKEHDLSRPSISTVPVLRIMFHPSH------SCSSF 204
W++TAAHC LS ++ + P + V +++H + +
Sbjct: 152 WVLTAAHCFPERNRVLSRWRVFAGAVAQ--ASPHGLQLGVQAVVYHGGYLPFRDPNSEEN 209
Query: 205 NNDIALLELTRSIQWSDLIRPACLPSGSLDYSEQSV-TVAGWGWTNENPSQGRRSNILQK 263
+NDIAL+ L+ + ++ I+P CLP+ + + TV GWG T G+++ +LQ+
Sbjct: 210 SNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQ---YYGQQAGVLQE 266
Query: 264 VALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPS 323
+ ++SN VC ++ +K CAG+ +GG DAC
Sbjct: 267 ARVPIISNDVCNG---ADFYGNQIKPKMFCAGYPEGGIDAC------------------- 304
Query: 324 HRSGVHWDPPLQADSGGPLMLLGAEST----QVIGLVSTGIGCARPRLPGLYTRLTRYIG 379
Q DSGGP + + S ++ G+VS G GCA + PG+YT+++ +
Sbjct: 305 -----------QGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFRE 353
Query: 380 WISDTLDIH 388
WI + H
Sbjct: 354 WIFQAIKTH 362
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
+++ +LQ+ + ++SN VC ++ +K CAG+ +GG DAC DSGGP +
Sbjct: 259 QQAGVLQEARVPIISNDVCNG---ADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCE 315
Query: 61 GAEST----QVIGLVSTGIG 76
+ S ++ G+VS G G
Sbjct: 316 DSISRTPRWRLCGIVSWGTG 335
>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The
Transmembrane Serine Protease Hepsin With Covalently
Bound Preferred Substrate
Length = 372
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 142/309 (45%), Gaps = 58/309 (18%)
Query: 100 IAGVPCGRSLAS------RR---TGKIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQ 150
+ P GR LA+ RR +IVGG + G +PW VSL+ G H CGG+++
Sbjct: 92 VCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGD 151
Query: 151 WIVTAAHCLCNGPSPLSASQINVTLKEHDLSRPSISTVPVLRIMFHPSH------SCSSF 204
W++TAAHC LS ++ + P + V +++H + +
Sbjct: 152 WVLTAAHCFPERNRVLSRWRVFAGAVAQ--ASPHGLQLGVQAVVYHGGYLPFRDPNSEEN 209
Query: 205 NNDIALLELTRSIQWSDLIRPACLPSGSLDYSEQSV-TVAGWGWTNENPSQGRRSNILQK 263
+NDIAL+ L+ + ++ I+P CLP+ + + TV GWG T G+++ +LQ+
Sbjct: 210 SNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQ---YYGQQAGVLQE 266
Query: 264 VALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPS 323
+ ++SN VC ++ +K CAG+ +GG DAC
Sbjct: 267 ARVPIISNDVCNG---ADFYGNQIKPKMFCAGYPEGGIDAC------------------- 304
Query: 324 HRSGVHWDPPLQADSGGPLMLLGAEST----QVIGLVSTGIGCARPRLPGLYTRLTRYIG 379
Q DSGGP + + S ++ G+VS G GCA + PG+YT+++ +
Sbjct: 305 -----------QGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFRE 353
Query: 380 WISDTLDIH 388
WI + H
Sbjct: 354 WIFQAIKTH 362
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
+++ +LQ+ + ++SN VC ++ +K CAG+ +GG DAC DSGGP +
Sbjct: 259 QQAGVLQEARVPIISNDVCNG---ADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCE 315
Query: 61 GAEST----QVIGLVSTGIG 76
+ S ++ G+VS G G
Sbjct: 316 DSISRTPRWRLCGIVSWGTG 335
>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|B Chain B, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|C Chain C, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|D Chain D, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species
Length = 223
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 130/271 (47%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG + SL+ G HFCGG++I W+V+AAHC S+I V L
Sbjct: 1 IVGGYECRKNSASYQASLQS-GYHFCGGSLISSTWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH+++ + + ++++ HPS++ + +NDI L++L++ + + LPS S
Sbjct: 52 EHNIAVNEGTEQFIDSVKVIMHPSYNSRNLDNDIMLIKLSKPASLNSYVSTVALPS-SCA 110
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
S V+GWG N + S + L+ + L ++S+ C + Y + + + CA
Sbjct: 111 SSGTRCLVSGWG--NLSGSSSNYPDTLRCLDLPILSSSSCNSAYPGQ-----ITSNMFCA 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q DSGGP++ G Q+ G
Sbjct: 164 GFMEGGKDSC------------------------------QGDSGGPVVCNG----QLQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA+ PG+YT++ Y WIS T+
Sbjct: 190 VVSWGYGCAQRNKPGVYTKVCNYRSWISSTM 220
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
+ L+ + L ++S+ C + Y + + + CAG +GGKD+C DSGGP++ G
Sbjct: 133 DTLRCLDLPILSSSSCNSAYPGQ-----ITSNMFCAGFMEGGKDSCQGDSGGPVVCNG-- 185
Query: 64 STQVIGLVSTGIG 76
Q+ G+VS G G
Sbjct: 186 --QLQGVVSWGYG 196
>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
pdb|2ZPR|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
Length = 222
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 133/274 (48%), Gaps = 54/274 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P VSL G HFCGG++++E W+V+AAHC S++ V L
Sbjct: 1 IVGGYECKAYSQPHQVSLNS-GYHFCGGSLVNENWVVSAAHCY--------KSRVAVRLG 51
Query: 177 EHDL--SRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH++ + S + R++ HP++S + +NDI L++L++ + ++P LPS S
Sbjct: 52 EHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPS-SCA 110
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
+ TV+GWG T + + G + LQ + + ++S C Y + + CA
Sbjct: 111 PAGTMCTVSGWGNTMSSTADGDK---LQCLNIPILSYSDCNNSYPGM-----ITNAMFCA 162
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G+ +GGKD+C Q DSGGP++ G ++ G
Sbjct: 163 GYLEGGKDSC------------------------------QGDSGGPVVCNG----ELQG 188
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTLDIH 388
+VS G GCA P PG+Y ++ + W++ T+ +
Sbjct: 189 VVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMATY 222
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
LQ + + ++S C Y + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 134 LQCLNIPILSYSDCNNSYPGM-----ITNAMFCAGYLEGGKDSCQGDSGGPVVCNG---- 184
Query: 66 QVIGLVSTGIG 76
++ G+VS G G
Sbjct: 185 ELQGVVSWGYG 195
>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With
The Protein Inhibitors Appi And Bpti
pdb|1BRC|E Chain E, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
pdb|1BRA|A Chain A, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
Length = 223
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 130/271 (47%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I++QW+V+AAHC S+I V L
Sbjct: 1 IVGGYTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH+++ + V +I+ HP+ + NNDI L++L+ ++ + + LPS
Sbjct: 52 EHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++LQ + ++ C+A Y + + ++ +C
Sbjct: 112 AGTQCL-ISGWG--NTLSSGVNEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGK +C Q DSGGP++ G ++ G
Sbjct: 164 GFLEGGKGSC------------------------------QGDSGGPVVCNG----ELQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA P P +YT++ Y+ WI DT+
Sbjct: 190 IVSWGYGCALPDNPDVYTKVCNYVDWIQDTI 220
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
++LQ + ++ C+A Y + + ++ +C G +GGK +C DSGGP++
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASYPGK-----ITDNMVCVGFLEGGKGSCQGDSGGPVVCN 184
Query: 61 GAESTQVIGLVSTGIG 76
G ++ G+VS G G
Sbjct: 185 G----ELQGIVSWGYG 196
>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX
pdb|1C9P|A Chain A, Complex Of Bdellastasin With Porcine Trypsin
Length = 223
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC S+I V L
Sbjct: 1 IVGGYTCAANSIPYQVSLNS-GSHFCGGSLINSQWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EH--DLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH D+ + + +I+ HP+ + ++ +NDI L++L+ + LP S
Sbjct: 52 EHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLXSRVATVSLPR-SCA 110
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
+ ++GWG N S ++LQ + V+S+ C++ Y + + + +C
Sbjct: 111 AAGTECLISGWG--NTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQ-----ITGNMICV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q DSGGP++ G Q+ G
Sbjct: 164 GFLEGGKDSC------------------------------QGDSGGPVVCNG----QLQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 190 IVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 5 ILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES 64
+LQ + V+S+ C++ Y + + + +C G +GGKD+C DSGGP++ G
Sbjct: 134 LLQCLKAPVLSDSSCKSSYPGQ-----ITGNMICVGFLEGGKDSCQGDSGGPVVCNG--- 185
Query: 65 TQVIGLVSTGIG 76
Q+ G+VS G G
Sbjct: 186 -QLQGIVSWGYG 196
>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5F|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1P57|B Chain B, Extracellular Domain Of Human Hepsin
Length = 255
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 132/283 (46%), Gaps = 49/283 (17%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG + G +PW VSL+ G H CGG+++ W++TAAHC LS ++
Sbjct: 1 IVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAV 60
Query: 177 EHDLSRPSISTVPVLRIMFHPSH------SCSSFNNDIALLELTRSIQWSDLIRPACLPS 230
+ P + V +++H + + +NDIAL+ L+ + ++ I+P CLP+
Sbjct: 61 AQ--ASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPA 118
Query: 231 GSLDYSEQSV-TVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKE 289
+ + TV GWG T G+++ +LQ+ + ++SN VC ++ +K
Sbjct: 119 AGQALVDGKICTVTGWGNTQ---YYGQQAGVLQEARVPIISNDVCNG---ADFYGNQIKP 172
Query: 290 SQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAES 349
CAG+ +GG DAC Q DSGGP + + S
Sbjct: 173 KMFCAGYPEGGIDAC------------------------------QGDSGGPFVCEDSIS 202
Query: 350 T----QVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLDIH 388
++ G+VS G GCA + PG+YT+++ + WI + H
Sbjct: 203 RTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTH 245
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
+++ +LQ+ + ++SN VC ++ +K CAG+ +GG DAC DSGGP +
Sbjct: 142 QQAGVLQEARVPIISNDVCNG---ADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCE 198
Query: 61 GAEST----QVIGLVSTGIG 76
+ S ++ G+VS G G
Sbjct: 199 DSISRTPRWRLCGIVSWGTG 218
>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon
Length = 222
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 131/271 (48%), Gaps = 54/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P VSL G HFCGG++++E W+V+AAHC S++ V L
Sbjct: 1 IVGGYECKAYSQPHQVSLNS-GYHFCGGSLVNENWVVSAAHCY--------KSRVEVRLG 51
Query: 177 EHDL--SRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH++ + S + R++ HP++S + +NDI L++L++ + ++P LP+ S
Sbjct: 52 EHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPT-SCA 110
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
+ TV+GWG T S SN LQ + + ++S C Y + + CA
Sbjct: 111 PAGTMCTVSGWGNT---MSSTADSNKLQCLNIPILSYSDCNNSYPGM-----ITNAMFCA 162
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G+ +GGKD+C Q DSGGP++ G ++ G
Sbjct: 163 GYLEGGKDSC------------------------------QGDSGGPVVCNG----ELQG 188
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA P PG+Y ++ + W++ T+
Sbjct: 189 VVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
SN LQ + + ++S C Y + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 131 SNKLQCLNIPILSYSDCNNSYPGM-----ITNAMFCAGYLEGGKDSCQGDSGGPVVCNG- 184
Query: 63 ESTQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 185 ---ELQGVVSWGYG 195
>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase)
Length = 223
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 126/270 (46%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++ NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ C++ Y + + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKD+C Q D GGP++ G ++ G+
Sbjct: 165 YLEGGKDSC------------------------------QGDXGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 VSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++L+ + ++S+ C++ Y + + + CAG+ +GGKD+C D GGP++ G
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAGYLEGGKDSCQGDXGGPVVCSG-- 185
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 186 --KLQGIVSWGSG 196
>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine
Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT
REFINEMENT
Length = 223
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 126/269 (46%), Gaps = 51/269 (18%)
Query: 118 VGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTLK 176
VGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 2 VGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEG 60
Query: 177 EHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDYS 236
S S V HPS++ ++ NNDI L++L + + + LP+
Sbjct: 61 NEQFISASKSIV-------HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAG 113
Query: 237 EQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH 296
Q + ++GWG N S ++L+ + ++S+ C++ Y + + + CAG+
Sbjct: 114 TQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAGY 165
Query: 297 EQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGLV 356
+GGKD+C Q DSGGP++ G ++ G+V
Sbjct: 166 LEGGKDSC------------------------------QGDSGGPVVCSG----KLQGIV 191
Query: 357 STGIGCARPRLPGLYTRLTRYIGWISDTL 385
S G GCA+ PG+YT++ Y+ WI T+
Sbjct: 192 SWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++L+ + ++S+ C++ Y + + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAGYLEGGKDSCQGDSGGPVVCSG-- 185
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 186 --KLQGIVSWGSG 196
>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin
Length = 223
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 129/271 (47%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC S I V L
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHC--------XKSGIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
E +++ + + + + HPS++ ++ NNDI L++L + + + LP+
Sbjct: 52 EDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++L+ + ++S+ C++ Y + + + CA
Sbjct: 112 AGTQCL-ISGWG--NTKSSGTSXPDVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCA 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q DSGGP++ G ++ G
Sbjct: 164 GXLEGGKDSC------------------------------QGDSGGPVVCSG----KLQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 190 IVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++L+ + ++S+ C++ Y + + + CAG +GGKD+C DSGGP++ G
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAGXLEGGKDSCQGDSGGPVVCSG-- 185
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 186 --KLQGIVSWGSG 196
>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii
Transmembrane Serine Proteinases Family
Length = 232
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 122/274 (44%), Gaps = 45/274 (16%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLS-ASQINVTL 175
IVGG GE+PW SL+ G H CG T+I+ W+V+AAHC +P + VT+
Sbjct: 1 IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTI 60
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
K + R + RI+ H + S + DI+L EL+ + +++ + CLP S ++
Sbjct: 61 KPSKMKR------GLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEF 114
Query: 236 SEQSVT-VAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
V V G+G + G N L++ ++++ C + + + +CA
Sbjct: 115 QPGDVMFVTGFGALKND---GYSQNHLRQAQVTLIDATTCN---EPQAYNDAITPRMLCA 168
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST-QVI 353
G +G DAC Q DSGGPL+ A +
Sbjct: 169 GSLEGKTDAC------------------------------QGDSGGPLVSSDARDIWYLA 198
Query: 354 GLVSTGIGCARPRLPGLYTRLTRYIGWISDTLDI 387
G+VS G CA+P PG+YTR+T WI+ I
Sbjct: 199 GIVSWGDECAKPNKPGVYTRVTALRDWITSKTGI 232
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
N L++ ++++ C + + + +CAG +G DAC DSGGPL+ A
Sbjct: 136 NHLRQAQVTLIDATTCN---EPQAYNDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDAR 192
Query: 64 ST-QVIGLVSTG 74
+ G+VS G
Sbjct: 193 DIWYLAGIVSWG 204
>pdb|2A31|A Chain A, Trypsin In Complex With Borate
pdb|2A32|A Chain A, Trypsin In Complex With Benzene Boronic Acid
Length = 223
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 128/270 (47%), Gaps = 53/270 (19%)
Query: 118 VGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLKE 177
VGG P+ VSL G HFCGG++I+ QW+V+AAHC S+I V L E
Sbjct: 2 VGGYTCAANSIPYQVSLNS-GSHFCGGSLINSQWVVSAAHCY--------KSRIQVRLGE 52
Query: 178 H--DLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
H D+ + + +I+ HP+ + ++ +NDI L++L+ + + LP S
Sbjct: 53 HNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPR-SCAA 111
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
+ ++GWG N S ++LQ + V+S+ C++ Y + + + +C G
Sbjct: 112 AGTECLISGWG--NTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQ-----ITGNMICVG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+GGKD+C Q DSGGP++ G Q+ G+
Sbjct: 165 FLEGGKDSC------------------------------QGDSGGPVVCNG----QLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 VSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 5 ILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES 64
+LQ + V+S+ C++ Y + + + +C G +GGKD+C DSGGP++ G
Sbjct: 134 LLQCLKAPVLSDSSCKSSYPGQ-----ITGNMICVGFLEGGKDSCQGDSGGPVVCNG--- 185
Query: 65 TQVIGLVSTGIG 76
Q+ G+VS G G
Sbjct: 186 -QLQGIVSWGYG 196
>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
pdb|2ZPQ|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
Length = 222
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 131/274 (47%), Gaps = 54/274 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P VSL G HFCGG++++E W+V+AAHC S++ V L
Sbjct: 1 IVGGYECKAYSQPHQVSLNS-GYHFCGGSLVNENWVVSAAHCY--------KSRVEVRLG 51
Query: 177 EHDL--SRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH++ + S + R++ HP++S + +NDI L++L++ + ++P LPS S
Sbjct: 52 EHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPS-SCA 110
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
+ TV+GWG T S N LQ + + ++S C Y + + CA
Sbjct: 111 PAGTMCTVSGWGNT---MSSTADKNKLQCLNIPILSYSDCNNSYPGM-----ITNAMFCA 162
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G+ +GGKD+C Q DSGGP++ G ++ G
Sbjct: 163 GYLEGGKDSC------------------------------QGDSGGPVVCNG----ELQG 188
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTLDIH 388
+VS G GCA P PG+Y ++ + W++ T+ +
Sbjct: 189 VVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMATY 222
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
N LQ + + ++S C Y + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 132 NKLQCLNIPILSYSDCNNSYPGM-----ITNAMFCAGYLEGGKDSCQGDSGGPVVCNG-- 184
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 185 --ELQGVVSWGYG 195
>pdb|2FI5|E Chain E, Crystal Structure Of A Bpti Variant (Cys38->ser) In
Complex With Trypsin
pdb|2FTM|A Chain A, Crystal Structure Of Trypsin Complexed With The Bpti
Variant (Tyr35- >gly)
Length = 224
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 127/271 (46%), Gaps = 52/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSD-LIRPACLPSGSLD 234
S S V HPS++ ++ NNDI L++L + D + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSNTLNNDIMLIKLKSAASLXDSRVASISLPTSCAS 112
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG N S ++L+ + ++S+ C++ Y + + + CA
Sbjct: 113 AGTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCA 164
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G+ +GGKD+C Q DSGGP++ G ++ G
Sbjct: 165 GYLEGGKDSC------------------------------QGDSGGPVVCSG----KLQG 190
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 IVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 221
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++L+ + ++S+ C++ Y + + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 134 DVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAGYLEGGKDSCQGDSGGPVVCSG-- 186
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 187 --KLQGIVSWGSG 197
>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-1
Length = 406
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 124/298 (41%), Gaps = 55/298 (18%)
Query: 99 PIAGVPCGRSLASRRTGKIVGGLAANPGEFPWIVSLKRHGGH-FCGGTIIHEQWIVTAAH 157
P+ G+P + + +I G A G PWI L G FCGG+++ WIVTAAH
Sbjct: 141 PVCGLP---KFSRKLMAQIFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAH 197
Query: 158 CLCNGPSP----------LSASQINVTLKEH--DLSRPSISTVPVLRIMFHPSHSCSSFN 205
CL P LS S + L +H S + + V HP + ++F
Sbjct: 198 CLHQSLDPEDPTLRDSDLLSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPNTFE 257
Query: 206 NDIALLELTRSIQWSDLIRPACLPSGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVA 265
ND+AL+EL S + + P CLP G V V+GWG R L ++
Sbjct: 258 NDVALVELLESPVLNAFVMPICLPEGPQQEGAM-VIVSGWG----KQFLQRFPETLMEIE 312
Query: 266 LSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHR 325
+ +V + CQ Y KK V +CAG ++GGKDAC
Sbjct: 313 IPIVDHSTCQKAYAPLKKK--VTRDMICAGEKEGGKDAC--------------------- 349
Query: 326 SGVHWDPPLQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
DSGGP++ L E Q ++G VS G C + G+Y+ + WI
Sbjct: 350 ---------AGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWI 398
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R L ++ + +V + CQ Y KK V +CAG ++GGKDAC DSGGP++ L
Sbjct: 303 RFPETLMEIEIPIVDHSTCQKAYAPLKKK--VTRDMICAGEKEGGKDACAGDSGGPMVTL 360
Query: 61 GAESTQ--VIGLVSTG 74
E Q ++G VS G
Sbjct: 361 NRERGQWYLVGTVSWG 376
>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum
Salmon
Length = 222
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 131/274 (47%), Gaps = 54/274 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P VSL G HFCGG++++E W+V+AAHC +++ V L
Sbjct: 1 IVGGYECKAYSQPHQVSLNS-GYHFCGGSLVNENWVVSAAHCY--------KTRVEVRLG 51
Query: 177 EHDL--SRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH++ + S + R++ HP++S + +NDI L++L++ + ++P LPS S
Sbjct: 52 EHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPS-SCA 110
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
+ TV+GWG T S N LQ + + ++S C Y + + CA
Sbjct: 111 PAGTMCTVSGWGNT---MSSTADKNKLQCLNIPILSYSDCNNSYPGM-----ITNAMFCA 162
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G+ +GGKD+C Q DSGGP++ G ++ G
Sbjct: 163 GYLEGGKDSC------------------------------QGDSGGPVVCNG----ELQG 188
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTLDIH 388
+VS G GCA P PG+Y ++ + W++ T+ +
Sbjct: 189 VVSWGYGCAEPGNPGVYAKVCIFNNWLTSTMATY 222
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
N LQ + + ++S C Y + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 132 NKLQCLNIPILSYSDCNNSYPGM-----ITNAMFCAGYLEGGKDSCQGDSGGPVVCNG-- 184
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 185 --ELQGVVSWGYG 195
>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A
Second Crystal Form
Length = 237
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 131/272 (48%), Gaps = 54/272 (19%)
Query: 116 KIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
KIVGG VSL G HFCGG++++E W+V+AAHC S++ V L
Sbjct: 15 KIVGGYECKAYSQAHQVSLNS-GYHFCGGSLVNENWVVSAAHCY--------KSRVEVRL 65
Query: 176 KEHDL--SRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
EH++ + S + R++ HP++S + +NDI L++L++ + ++P LP+ S
Sbjct: 66 GEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPT-SC 124
Query: 234 DYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMC 293
+ TV+GWG T S SN LQ + + ++S C Y + + C
Sbjct: 125 APAGTMCTVSGWGNT---MSSTADSNKLQCLNIPILSYSDCNNSYPGM-----ITNAMFC 176
Query: 294 AGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVI 353
AG+ +GGKD+C Q DSGGP++ G ++
Sbjct: 177 AGYLEGGKDSC------------------------------QGDSGGPVVCNG----ELQ 202
Query: 354 GLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+VS G GCA P PG+Y ++ + W++ T+
Sbjct: 203 GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 234
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
SN LQ + + ++S C Y + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 146 SNKLQCLNIPILSYSDCNNSYPGM-----ITNAMFCAGYLEGGKDSCQGDSGGPVVCNG- 199
Query: 63 ESTQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 200 ---ELQGVVSWGYG 210
>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO
Determine The Conformational Dynamics Of Trypsin
Length = 223
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 123/269 (45%), Gaps = 51/269 (18%)
Query: 118 VGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTLK 176
VGG P+ VSL G HFCGG++I QW+V+AAHC +G L INV
Sbjct: 2 VGGYTCGANTVPYQVSL-NSGYHFCGGSLIDSQWVVSAAHCYKSGIQVRLGEDNINVVEG 60
Query: 177 EHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDYS 236
S S V HPS+ ++ NNDI L++L + + LP+
Sbjct: 61 NEQFISASKSIV-------HPSYDSNTLNNDIMLIKLKSAASLDSRVASISLPTSCASAG 113
Query: 237 EQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH 296
Q + ++GWG N S ++L+ + ++S+ C++ Y + + + CAG+
Sbjct: 114 TQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAGY 165
Query: 297 EQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGLV 356
+GGKD+C Q DSGGP++ G ++ G+V
Sbjct: 166 LEGGKDSC------------------------------QGDSGGPVVCSG----KLQGIV 191
Query: 357 STGIGCARPRLPGLYTRLTRYIGWISDTL 385
S G GCA+ PG+YT++ Y+ WI T+
Sbjct: 192 SWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++L+ + ++S+ C++ Y + + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAGYLEGGKDSCQGDSGGPVVCSG-- 185
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 186 --KLQGIVSWGSG 196
>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant
Length = 229
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPS-PLSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNKRRKNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ C++ Y + + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKD+C Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDSC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 VSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++L+ + ++S+ C++ Y + + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAGYLEGGKDSCQGDSGGPVVCSG-- 185
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 186 --KLQGIVSWGSG 196
>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
pdb|1TRN|B Chain B, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
Length = 224
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 126/271 (46%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I+EQW+V+A HC S+I V L
Sbjct: 1 IVGGYNCEENSVPYQVSLNS-GYHFCGGSLINEQWVVSAGHCY--------KSRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH++ + + +I+ HP + + NNDI L++L+ + + LP+
Sbjct: 52 EHNIEVLEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINARVSTISLPTAPPA 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
+ + ++GWG N S + LQ + V+S C+A Y + + + C
Sbjct: 112 TGTKCL-ISGWG--NTASSGADXPDELQCLDAPVLSQAKCEASYPGK-----ITSNMFCV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q DSGGP++ G Q+ G
Sbjct: 164 GFLEGGKDSC------------------------------QGDSGGPVVCNG----QLQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA+ PG+YT++ Y+ WI +T+
Sbjct: 190 VVSWGDGCAQKNKPGVYTKVYNYVKWIKNTI 220
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
LQ + V+S C+A Y + + + C G +GGKD+C DSGGP++ G
Sbjct: 135 LQCLDAPVLSQAKCEASYPGK-----ITSNMFCVGFLEGGKDSCQGDSGGPVVCNG---- 185
Query: 66 QVIGLVSTGIG 76
Q+ G+VS G G
Sbjct: 186 QLQGVVSWGDG 196
>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|B Chain B, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|C Chain C, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|D Chain D, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
Length = 235
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 126/277 (45%), Gaps = 54/277 (19%)
Query: 115 GKIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVT 174
G+I+GG A P++ S++ +G H CGG ++ EQW+++AAHCL + + ++ V
Sbjct: 6 GRILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDA----ADGKVQVL 61
Query: 175 LKEHDLSRPSIST--VPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGS 232
L H LS+P S VLR + HP + ++D+ LL+L+ +RP LP
Sbjct: 62 LGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQR 119
Query: 233 LDYSEQSVT---VAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKE 289
+D T VAGWG N GRR + LQ V L V+ C +G + E
Sbjct: 120 VDRDVAPGTLCDVAGWGIVNH---AGRRPDSLQHVLLPVLDRATCNRRTHHDGA---ITE 173
Query: 290 SQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAES 349
MCA E +D+C + DSGGPL+ G
Sbjct: 174 RLMCA--ESNRRDSC------------------------------KGDSGGPLVCGGV-- 199
Query: 350 TQVIGLVSTGIG-CARPRLPGLYTRLTRYIGWISDTL 385
+ G+V++G C + PG+YTR+ Y WI L
Sbjct: 200 --LEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 234
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
RR + LQ V L V+ C +G + E MCA E +D+C DSGGPL+
Sbjct: 143 RRPDSLQHVLLPVLDRATCNRRTHHDGA---ITERLMCA--ESNRRDSCKGDSGGPLVCG 197
Query: 61 GAESTQVIGLVSTG 74
G + G+V++G
Sbjct: 198 GV----LEGVVTSG 207
>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
pdb|2RA3|B Chain B, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
Length = 224
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 126/271 (46%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I+EQW+V+A HC S+I V L
Sbjct: 1 IVGGYNCEENSVPYQVSLNS-GYHFCGGSLINEQWVVSAGHCY--------KSRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH++ + + +I+ HP + + NNDI L++L+ + + LP+
Sbjct: 52 EHNIEVLEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINAHVSTISLPTAPPA 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
+ + ++GWG N S + LQ + V+S C+A Y + + + C
Sbjct: 112 TGTKCL-ISGWG--NTASSGADYPDELQCLDAPVLSQAKCEASYPGK-----ITSNMFCV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q D+GGP++ G Q+ G
Sbjct: 164 GFLEGGKDSC------------------------------QGDAGGPVVCNG----QLQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA+ PG+YT++ Y+ WI +T+
Sbjct: 190 VVSWGDGCAQKNKPGVYTKVYNYVKWIKNTI 220
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
LQ + V+S C+A Y + + + C G +GGKD+C D+GGP++ G
Sbjct: 135 LQCLDAPVLSQAKCEASYPGK-----ITSNMFCVGFLEGGKDSCQGDAGGPVVCNG---- 185
Query: 66 QVIGLVSTGIG 76
Q+ G+VS G G
Sbjct: 186 QLQGVVSWGDG 196
>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor
pdb|1YBW|B Chain B, Protease Domain Of Hgfa With No Inhibitor
pdb|1YC0|A Chain A, Short Form Hgfa With First Kunitz Domain From Hai-1
pdb|2R0K|A Chain A, Protease Domain Of Hgfa With Inhibitor Fab58
Length = 283
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 131/291 (45%), Gaps = 49/291 (16%)
Query: 105 CGRSLASRR--TGKIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNG 162
CGR R +I+GG ++ PG PW+ ++ G FC G+++H W+V+AAHC +
Sbjct: 22 CGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAIYI-GDSFCAGSLVHTCWVVSAAHCFSHS 80
Query: 163 PSPLSASQINVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSFN---NDIALLELT----R 215
P ++V L +H +R + T + P S FN +D+ L+ L R
Sbjct: 81 P---PRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDR 137
Query: 216 SIQWSDLIRPACLPS-GSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVC 274
S ++P CLP GS + +AGWG +EN S S+ L++ + +V++ C
Sbjct: 138 CATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSG--YSSSLREALVPLVADHKC 195
Query: 275 QAWYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPL 334
+ E ++ + +CAG+ DAC
Sbjct: 196 SS---PEVYGADISPNMLCAGYFDCKSDAC------------------------------ 222
Query: 335 QADSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
Q DSGGPL + G++S G GC R PG+YTR+ Y+ WI+D +
Sbjct: 223 QGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRI 273
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
S+ L++ + +V++ C + E ++ + +CAG+ DAC DSGGPL
Sbjct: 179 SSSLREALVPLVADHKCSS---PEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKN 235
Query: 63 ESTQVIGLVSTGIG 76
+ G++S G G
Sbjct: 236 GVAYLYGIISWGDG 249
>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1
pdb|4DJZ|B Chain B, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
pdb|4DJZ|D Chain D, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 251
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 116/280 (41%), Gaps = 52/280 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH-FCGGTIIHEQWIVTAAHCLCNGPSP---------- 165
I G A G PWI L G FCGG+++ WIVTAAHCL P
Sbjct: 1 IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDL 60
Query: 166 LSASQINVTLKEHDLSRPSIST--VPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLI 223
LS S + L +H R + + V HP + ++F ND+AL+EL S + +
Sbjct: 61 LSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFV 120
Query: 224 RPACLPSGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGK 283
P CLP G V V+GWG R L ++ + +V + CQ Y K
Sbjct: 121 MPICLPEGPQQEGAM-VIVSGWG----KQFLQRFPETLMEIEIPIVDHSTCQKAYAPLKK 175
Query: 284 KINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLM 343
K V +CAG ++GGKDAC DSGGP++
Sbjct: 176 K--VTRDMICAGEKEGGKDAC------------------------------AGDSGGPMV 203
Query: 344 LLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
L E Q ++G VS G C + G+Y+ + WI
Sbjct: 204 TLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWI 243
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R L ++ + +V + CQ Y KK V +CAG ++GGKDAC DSGGP++ L
Sbjct: 148 RFPETLMEIEIPIVDHSTCQKAYAPLKKK--VTRDMICAGEKEGGKDACAGDSGGPMVTL 205
Query: 61 GAESTQ--VIGLVSTG 74
E Q ++G VS G
Sbjct: 206 NRERGQWYLVGTVSWG 221
>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between
Salmon And Bovine Trypsins
Length = 222
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 130/271 (47%), Gaps = 54/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG VSL G HFCGG++++E W+V+AAHC S++ V L
Sbjct: 1 IVGGYECKAYSQAHQVSLNS-GYHFCGGSLVNENWVVSAAHCY--------KSRVEVRLG 51
Query: 177 EHDL--SRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH++ + S + R++ HP++S + +NDI L++L++ + ++P LP+ S
Sbjct: 52 EHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPT-SCA 110
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
+ TV+GWG T S S+ LQ + + ++S C Y + + CA
Sbjct: 111 PAGTMCTVSGWGNT---MSSTADSDKLQCLNIPILSYSDCNDSYPGM-----ITNAMFCA 162
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G+ +GGKD+C Q DSGGP++ G ++ G
Sbjct: 163 GYLEGGKDSC------------------------------QGDSGGPVVCNG----ELQG 188
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA P PG+Y ++ + W++ T+
Sbjct: 189 VVSWGYGCAEPGNPGVYAKVCIFSDWLTSTM 219
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
S+ LQ + + ++S C Y + + CAG+ +GGKD+C DSGGP++ G
Sbjct: 131 SDKLQCLNIPILSYSDCNDSYPGM-----ITNAMFCAGYLEGGKDSCQGDSGGPVVCNG- 184
Query: 63 ESTQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 185 ---ELQGVVSWGYG 195
>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a
pdb|2XWA|B Chain B, Crystal Structure Of Complement Factor D Mutant R202a
Length = 228
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 124/275 (45%), Gaps = 54/275 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
I+GG A P++ S++ +G H CGG ++ EQW+++AAHCL + + ++ V L
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDA----ADGKVQVLLG 56
Query: 177 EHDLSRPSIST--VPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
H LS+P S VLR + HP + ++D+ LL+L+ +RP LP +D
Sbjct: 57 AHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVD 114
Query: 235 YSEQSVT---VAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQ 291
T VAGWG N GRR + LQ V L V+ C +G + E
Sbjct: 115 RDVAPGTLCDVAGWGIVNH---AGRRPDSLQHVLLPVLDRATCNRRTHHDGA---ITERL 168
Query: 292 MCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQ 351
MCA E +D+C + DSGGPL+ G
Sbjct: 169 MCA--ESNRRDSC------------------------------KGDSGGPLVCGGV---- 192
Query: 352 VIGLVSTGIG-CARPRLPGLYTRLTRYIGWISDTL 385
+ G+V++G C + PG+YTR+ Y WI L
Sbjct: 193 LEGVVTSGSAVCGNRKKPGIYTRVASYAAWIDSVL 227
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
RR + LQ V L V+ C +G + E MCA E +D+C DSGGPL+
Sbjct: 136 RRPDSLQHVLLPVLDRATCNRRTHHDGA---ITERLMCA--ESNRRDSCKGDSGGPLVCG 190
Query: 61 GAESTQVIGLVSTG 74
G + G+V++G
Sbjct: 191 GV----LEGVVTSG 200
>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UPE|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|B Chain B, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 121/270 (44%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSS-----CKSASSFIITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKDAC Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDAC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG YT+L Y+ WI T+
Sbjct: 191 VSWGSGCAQKNKPGFYTKLCNYVSWIKQTI 220
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ + CAG+ +GGKDAC DSGGP++ G ++ G+VS G G
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVCSG----KLQGIVSWGSG 196
>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUB|C Chain C, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUC|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non- Inhibitory Antibody Fab40.Deltatrp And
Ac-Kqlr-Chloromethylketone
pdb|3K2U|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Inhibitory Antibody Fab40
Length = 257
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 126/277 (45%), Gaps = 47/277 (16%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
I+GG ++ PG PW+ ++ G FC G+++H W+V+AAHC + P ++V L
Sbjct: 1 IIGGSSSLPGSHPWLAAIYI-GDSFCAGSLVHTCWVVSAAHCFSHSP---PRDSVSVVLG 56
Query: 177 EHDLSRPSISTVPVLRIMFHPSHSCSSFN---NDIALLEL----TRSIQWSDLIRPACLP 229
+H +R + T + P S FN +D+ L+ L R S ++P CLP
Sbjct: 57 QHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLP 116
Query: 230 S-GSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVK 288
GS + +AGWG +EN S S+ L++ + +V++ C + E ++
Sbjct: 117 EPGSTFPAGHKCQIAGWGHLDENVSG--YSSSLREALVPLVADHKCSS---PEVYGADIS 171
Query: 289 ESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAE 348
+ +CAG+ DAC Q DSGGPL
Sbjct: 172 PNMLCAGYFDCKSDAC------------------------------QGDSGGPLACEKNG 201
Query: 349 STQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+ G++S G GC R PG+YTR+ Y+ WI+D +
Sbjct: 202 VAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRI 238
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
S+ L++ + +V++ C + E ++ + +CAG+ DAC DSGGPL
Sbjct: 144 SSSLREALVPLVADHKCSS---PEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKN 200
Query: 63 ESTQVIGLVSTGIG 76
+ G++S G G
Sbjct: 201 GVAYLYGIISWGDG 214
>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75
Length = 248
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 126/277 (45%), Gaps = 47/277 (16%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
I+GG ++ PG PW+ ++ G FC G+++H W+V+AAHC + P ++V L
Sbjct: 1 IIGGSSSLPGSHPWLAAIYI-GDSFCAGSLVHTCWVVSAAHCFSHSP---PRDSVSVVLG 56
Query: 177 EHDLSRPSISTVPVLRIMFHPSHSCSSFN---NDIALLEL----TRSIQWSDLIRPACLP 229
+H +R + T + P S FN +D+ L+ L R S ++P CLP
Sbjct: 57 QHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLP 116
Query: 230 S-GSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVK 288
GS + +AGWG +EN S S+ L++ + +V++ C + E ++
Sbjct: 117 EPGSTFPAGHKCQIAGWGHLDENVSG--YSSSLREALVPLVADHKCSS---PEVYGADIS 171
Query: 289 ESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAE 348
+ +CAG+ DAC Q DSGGPL
Sbjct: 172 PNMLCAGYFDCKSDAC------------------------------QGDSGGPLACEKNG 201
Query: 349 STQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+ G++S G GC R PG+YTR+ Y+ WI+D +
Sbjct: 202 VAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRI 238
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
S+ L++ + +V++ C + E ++ + +CAG+ DAC DSGGPL
Sbjct: 144 SSSLREALVPLVADHKCSS---PEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKN 200
Query: 63 ESTQVIGLVSTGIG 76
+ G++S G G
Sbjct: 201 GVAYLYGIISWGDG 214
>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity
Length = 228
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 124/275 (45%), Gaps = 54/275 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
I+GG A P++ S++ +G H CGG ++ EQW+++AAHCL + + ++ V L
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDA----ADGKVQVLLG 56
Query: 177 EHDLSRPSIST--VPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
H LS+P S VLR + HP + + ++D+ LL+L+ +RP LP +D
Sbjct: 57 AHSLSQPEPSKRLYDVLRAVPHPDYQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVD 114
Query: 235 YSEQSVT---VAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQ 291
T VAGWG N GRR + LQ V L V+ C +G + E
Sbjct: 115 RDVAPGTLCDVAGWGIVNH---AGRRPDSLQHVLLPVLDRATCNRRTHHDGA---ITERL 168
Query: 292 MCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQ 351
MCA E +D+C + DSGGPL+ G
Sbjct: 169 MCA--ESNRRDSC------------------------------KGDSGGPLVCGGV---- 192
Query: 352 VIGLVSTGIG-CARPRLPGLYTRLTRYIGWISDTL 385
+ G+VS G C + PG+YTR+ Y WI L
Sbjct: 193 LEGVVSWGSRVCGNRKKPGIYTRVASYAAWIDSVL 227
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLM 58
RR + LQ V L V+ C +G + E MCA E +D+C DSGGPL+
Sbjct: 136 RRPDSLQHVLLPVLDRATCNRRTHHDGA---ITERLMCA--ESNRRDSCKGDSGGPLV 188
>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme
pdb|1DSU|B Chain B, Human Factor D, Complement Activating Enzyme
pdb|1DFP|A Chain A, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DFP|B Chain B, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DIC|A Chain A, Structure Of 3,4-Dichloroisocoumarin-Inhibited Factor D
pdb|1BIO|A Chain A, Human Complement Factor D In Complex With Isatoic
Anhydride Inhibitor
pdb|1HFD|A Chain A, Human Complement Factor D In A P21 Crystal Form
pdb|4D9R|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9R|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 124/275 (45%), Gaps = 54/275 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
I+GG A P++ S++ +G H CGG ++ EQW+++AAHCL + + ++ V L
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDA----ADGKVQVLLG 56
Query: 177 EHDLSRPSIST--VPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
H LS+P S VLR + HP + ++D+ LL+L+ +RP LP +D
Sbjct: 57 AHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVD 114
Query: 235 YSEQSVT---VAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQ 291
T VAGWG N GRR + LQ V L V+ C +G + E
Sbjct: 115 RDVAPGTLCDVAGWGIVNH---AGRRPDSLQHVLLPVLDRATCNRRTHHDGA---ITERL 168
Query: 292 MCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQ 351
MCA E +D+C + DSGGPL+ G
Sbjct: 169 MCA--ESNRRDSC------------------------------KGDSGGPLVCGGV---- 192
Query: 352 VIGLVSTGIG-CARPRLPGLYTRLTRYIGWISDTL 385
+ G+V++G C + PG+YTR+ Y WI L
Sbjct: 193 LEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
RR + LQ V L V+ C +G + E MCA E +D+C DSGGPL+
Sbjct: 136 RRPDSLQHVLLPVLDRATCNRRTHHDGA---ITERLMCA--ESNRRDSCKGDSGGPLVCG 190
Query: 61 GAESTQVIGLVSTG 74
G + G+V++G
Sbjct: 191 GV----LEGVVTSG 200
>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin)
Length = 224
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 126/271 (46%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I EQW+V+AAHC ++I V L
Sbjct: 1 IVGGYTCEENSLPYQVSLNS-GSHFCGGSLISEQWVVSAAHCY--------KTRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH++ + + ++I+ HP ++ + +NDI L++L+ + + LP+
Sbjct: 52 EHNIKVLEGNEQFINAVKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPA 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
+ + ++GWG N + L+ + V++ C+A Y + + S C
Sbjct: 112 AGTECL-ISGWG--NTLSFGADYPDELKCLDAPVLTQAECKASYPGK-----ITNSMFCV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q DSGGP++ G Q+ G
Sbjct: 164 GFLEGGKDSC------------------------------QRDSGGPVVCNG----QLQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA PG+YT++ Y+ WI DT+
Sbjct: 190 VVSWGHGCAWKNRPGVYTKVYNYVDWIKDTI 220
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
L+ + V++ C+A Y + + S C G +GGKD+C DSGGP++ G
Sbjct: 135 LKCLDAPVLTQAECKASYPGK-----ITNSMFCVGFLEGGKDSCQRDSGGPVVCNG---- 185
Query: 66 QVIGLVSTGIG 76
Q+ G+VS G G
Sbjct: 186 QLQGVVSWGHG 196
>pdb|1AUT|C Chain C, Human Activated Protein C
Length = 250
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 124/275 (45%), Gaps = 51/275 (18%)
Query: 117 IVGGLAANPGEFPW-IVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
++ G G+ PW +V L CG +IH W++TAAHC+ + ++ V L
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMD------ESKKLLVRL 54
Query: 176 KEHDLSRPSI--STVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
E+DL R + + + HP++S S+ +NDIALL L + S I P CLP L
Sbjct: 55 GEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGL 114
Query: 234 DYSE-----QSVTVAGWGW--TNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKIN 286
E Q V GWG+ + E ++ R+ +L + + VV + C SE
Sbjct: 115 AERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNEC-----SEVMSNM 169
Query: 287 VKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLG 346
V E+ +CAG +DAC + DSGGP++
Sbjct: 170 VSENMLCAGILGDRQDAC------------------------------EGDSGGPMVASF 199
Query: 347 AESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+ ++GLVS G GC G+YT+++RY+ WI
Sbjct: 200 HGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWI 234
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 2 RSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLG 61
R+ +L + + VV + C SE V E+ +CAG +DAC DSGGP++
Sbjct: 145 RTFVLNFIKIPVVPHNEC-----SEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVASF 199
Query: 62 AESTQVIGLVSTGIG 76
+ ++GLVS G G
Sbjct: 200 HGTWFLVGLVSWGEG 214
>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 240
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 124/275 (45%), Gaps = 51/275 (18%)
Query: 117 IVGGLAANPGEFPW-IVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
++ G G+ PW +V L CG +IH W++TAAHC+ + ++ V L
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMD------ESKKLLVRL 54
Query: 176 KEHDLSRPSI--STVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
E+DL R + + + HP++S S+ +NDIALL L + S I P CLP L
Sbjct: 55 GEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGL 114
Query: 234 DYSE-----QSVTVAGWGW--TNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKIN 286
E Q V GWG+ + E ++ R+ +L + + VV + C SE
Sbjct: 115 AERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNEC-----SEVMSNM 169
Query: 287 VKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLG 346
V E+ +CAG +DAC + DSGGP++
Sbjct: 170 VSENMLCAGILGDRQDAC------------------------------EGDSGGPMVASF 199
Query: 347 AESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+ ++GLVS G GC G+YT+++RY+ WI
Sbjct: 200 HGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWI 234
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 2 RSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLG 61
R+ +L + + VV + C SE V E+ +CAG +DAC DSGGP++
Sbjct: 145 RTFVLNFIKIPVVPHNEC-----SEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVASF 199
Query: 62 AESTQVIGLVSTGIG 76
+ ++GLVS G G
Sbjct: 200 HGTWFLVGLVSWGEG 214
>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a
pdb|2XWB|I Chain I, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|J Chain J, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 228
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 124/275 (45%), Gaps = 54/275 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
I+GG A P++ S++ +G H CGG ++ EQW+++AAHCL + + ++ V L
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDA----ADGKVQVLLG 56
Query: 177 EHDLSRPSIST--VPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
H LS+P S VLR + HP + ++D+ LL+L+ +RP LP +D
Sbjct: 57 AHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVD 114
Query: 235 YSEQSVT---VAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQ 291
T VAGWG N GRR + LQ V L V+ C +G + E
Sbjct: 115 RDVAPGTLCDVAGWGIVNH---AGRRPDSLQHVLLPVLDRATCNRRTHHDGA---ITERL 168
Query: 292 MCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQ 351
MCA E +D+C + D+GGPL+ G
Sbjct: 169 MCA--ESNRRDSC------------------------------KGDAGGPLVCGGV---- 192
Query: 352 VIGLVSTGIG-CARPRLPGLYTRLTRYIGWISDTL 385
+ G+V++G C + PG+YTR+ Y WI L
Sbjct: 193 LEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
RR + LQ V L V+ C +G + E MCA E +D+C D+GGPL+
Sbjct: 136 RRPDSLQHVLLPVLDRATCNRRTHHDGA---ITERLMCA--ESNRRDSCKGDAGGPLVCG 190
Query: 61 GAESTQVIGLVSTG 74
G + G+V++G
Sbjct: 191 GV----LEGVVTSG 200
>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLB|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLP|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PM3|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 122/270 (45%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSS-----CKSASSFIITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKDAC Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDAC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 VSWGSGCAQKNKPGIYTKVCNYVSWIKQTI 220
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ + CAG+ +GGKDAC DSGGP++ G ++ G+VS G G
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVCSG----KLQGIVSWGSG 196
>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UOP|A Chain A, Bovine Trypsin Variant X(triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UQO|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 121/270 (44%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSS-----CKSASSFIITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKDAC Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDAC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG YT++ Y+ WI T+
Sbjct: 191 VSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ + CAG+ +GGKDAC DSGGP++ G ++ G+VS G G
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVCSG----KLQGIVSWGSG 196
>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin
Variant X(99175190)BT
Length = 223
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 122/270 (45%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSS-----CKSASSFIITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKDAC Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDAC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 VSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ + CAG+ +GGKDAC DSGGP++ G ++ G+VS G G
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVCSG----KLQGIVSWGSG 196
>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PWC|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PYH|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3Q00|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Comlex
With Small Molecule Inhibitor
Length = 223
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 122/270 (45%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSS-----CKSASSFIITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKDAC Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDAC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 VSWGEGCAQKNKPGIYTKVCNYVSWIKQTI 220
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ + CAG+ +GGKDAC DSGGP++ G ++ G+VS G G
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVCSG----KLQGIVSWGEG 196
>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin Variant X(Triple.Glu)bt.D2
pdb|1V2L|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.D1
pdb|1V2M|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.A1
Length = 223
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 122/270 (45%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSS-----CKSASSFIITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKDAC Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDAC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 VSWGEGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ + CAG+ +GGKDAC DSGGP++ G ++ G+VS G G
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVCSG----KLQGIVSWGEG 196
>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With
Benzamidine
Length = 220
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 126/274 (45%), Gaps = 60/274 (21%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG VSL G HFCGG+++ + W+V+AAHC S + V L
Sbjct: 1 IVGGYECTKHSQAHQVSLNS-GYHFCGGSLVSKDWVVSAAHCY--------KSVLRVRLG 51
Query: 177 EHDL-----SRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSG 231
EH + + IS+ V+R HP++S + NNDI L++LT+ + + LP+
Sbjct: 52 EHHIRVNEGTEQYISSSSVIR---HPNYSSYNINNDIMLIKLTKPATLNQYVHAVALPT- 107
Query: 232 SLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQ 291
TV+GWG T + + G + LQ ++L ++S+ C Y + +S
Sbjct: 108 ECAADATMCTVSGWGNTMSSVADGDK---LQCLSLPILSHADCANSYPGM-----ITQSM 159
Query: 292 MCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQ 351
CAG+ +GGKD+C Q DSGGP++ G
Sbjct: 160 FCAGYLEGGKDSC------------------------------QGDSGGPVVCNGV---- 185
Query: 352 VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+ G+VS G GCA PG+Y ++ GW+ DT+
Sbjct: 186 LQGVVSWGYGCAERDHPGVYAKVCVLSGWVRDTM 219
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
LQ ++L ++S+ C Y + +S CAG+ +GGKD+C DSGGP++ G
Sbjct: 134 LQCLSLPILSHADCANSYPGM-----ITQSMFCAGYLEGGKDSCQGDSGGPVVCNGV--- 185
Query: 66 QVIGLVSTGIG 76
+ G+VS G G
Sbjct: 186 -LQGVVSWGYG 195
>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|B Chain B, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|C Chain C, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|D Chain D, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|3L33|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L3T|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3P92|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17G)
pdb|3P95|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17D)
Length = 224
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 125/271 (46%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I EQW+V+AAHC ++I V L
Sbjct: 1 IVGGYTCEENSLPYQVSLNS-GSHFCGGSLISEQWVVSAAHCY--------KTRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH++ + + +I+ HP ++ + +NDI L++L+ + + LP+
Sbjct: 52 EHNIKVLEGNEQFINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPA 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
+ + ++GWG N + L+ + V++ C+A Y + + S C
Sbjct: 112 AGTECL-ISGWG--NTLSFGADYPDELKCLDAPVLTQAECKASYPGK-----ITNSMFCV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q D+GGP++ G Q+ G
Sbjct: 164 GFLEGGKDSC------------------------------QRDAGGPVVCNG----QLQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA PG+YT++ Y+ WI DT+
Sbjct: 190 VVSWGHGCAWKNRPGVYTKVYNYVDWIKDTI 220
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
L+ + V++ C+A Y + + S C G +GGKD+C D+GGP++ G
Sbjct: 135 LKCLDAPVLTQAECKASYPGK-----ITNSMFCVGFLEGGKDSCQRDAGGPVVCNG---- 185
Query: 66 QVIGLVSTGIG 76
Q+ G+VS G G
Sbjct: 186 QLQGVVSWGHG 196
>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
pdb|4B2C|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
Length = 223
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 121/270 (44%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSS-----CKSASSFIITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKDAC Q D+GGP++ G ++ G+
Sbjct: 165 YLEGGKDAC------------------------------QGDAGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG YT++ Y+ WI T+
Sbjct: 191 VSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ + CAG+ +GGKDAC D+GGP++ G ++ G+VS G G
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDAGGPVVCSG----KLQGIVSWGSG 196
>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 122/270 (45%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++++ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLLNSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSS-----CKSASSFIITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKDAC Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDAC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 VSWGSGCAQKNKPGIYTKVCNYVSWIKQTI 220
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ + CAG+ +GGKDAC DSGGP++ G ++ G+VS G G
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVCSG----KLQGIVSWGSG 196
>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of
Prophenoloxidase Activating Factor-I In A Zymogen Form
Length = 278
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 134/292 (45%), Gaps = 59/292 (20%)
Query: 116 KIVGGLAANPGEFPWIVSL-KRHGGHF----CGGTIIHEQWIVTAAHCLCNGPSPLSASQ 170
KI+ G P EFPW + ++ +F CGG++I+ ++IVTAAHC+ + +
Sbjct: 22 KILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAGRVLRVVGAL 81
Query: 171 INVTLKE---------HDLSRPSISTVPV----LRIMFHPSHSCSSFN--NDIALLELTR 215
V L E + R + P+ + HP + S + +DIAL+ L R
Sbjct: 82 NKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNR 141
Query: 216 SIQWSDLIRPACLPSGSLDYS-EQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVC 274
+++++ IRP CLP + + Q +TV GWG T G+ S I QK+A+ VV + C
Sbjct: 142 QVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRT----ETGQYSTIKQKLAVPVVHAEQC 197
Query: 275 QAWYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPL 334
+ + G + V+ SQ+CAG E+ KD+C
Sbjct: 198 AKTFGAAG--VRVRSSQLCAGGEK-AKDSC------------------------------ 224
Query: 335 QADSGGPLMLLGAESTQVI-GLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
DSGGPL+ A + GLVS G C PG+YT++ +Y WI +
Sbjct: 225 GGDSGGPLLAERANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGNI 276
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
S I QK+A+ VV + C + + G + V+ SQ+CAG E+ KD+C DSGGPL+ A
Sbjct: 181 STIKQKLAVPVVHAEQCAKTFGAAG--VRVRSSQLCAGGEKA-KDSCGGDSGGPLLAERA 237
Query: 63 ESTQVI-GLVSTG 74
+ GLVS G
Sbjct: 238 NQQFFLEGLVSFG 250
>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
pdb|4B1T|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
Length = 223
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 122/270 (45%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSS-----CKSASSFIITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKDAC Q D+GGP++ G ++ G+
Sbjct: 165 YLEGGKDAC------------------------------QGDAGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 VSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ + CAG+ +GGKDAC D+GGP++ G ++ G+VS G G
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDAGGPVVCSG----KLQGIVSWGSG 196
>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 121/270 (44%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSS-----CKSASSFIITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKD+C Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDSC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG YT++ Y+ WI T+
Sbjct: 191 VSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ + CAG+ +GGKD+C DSGGP++ G ++ G+VS G G
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSG 196
>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
pdb|4B2B|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
Length = 223
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 121/270 (44%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSS-----CKSASSFIITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKDAC Q D+GGP++ G ++ G+
Sbjct: 165 YLEGGKDAC------------------------------QGDAGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG YT++ Y+ WI T+
Sbjct: 191 VSWGEGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ + CAG+ +GGKDAC D+GGP++ G ++ G+VS G G
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDAGGPVVCSG----KLQGIVSWGEG 196
>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2
pdb|1Q3X|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-2
Length = 328
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 143/299 (47%), Gaps = 51/299 (17%)
Query: 97 SSPIAGVPCGRSLASRRTG-KIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTA 155
S P+ CG L++R TG +I GG A PG+FPW V + GG G ++++ W++TA
Sbjct: 68 SLPVCEPVCG--LSARTTGGRIYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTA 123
Query: 156 AHCLCNGPSPLSASQINV-TLKEHDLSRPSISTVPVLRIMFHPSHSCSS-FNNDIALLEL 213
AH + SA I + TLK LS P + + H ++ + F+NDIAL++L
Sbjct: 124 AHAVYEQKHDASALDIRMGTLKR--LS-PHYTQAWSEAVFIHEGYTHDAGFDNDIALIKL 180
Query: 214 TRSIQWSDLIRPACLP---SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVS 270
+ + I P CLP + S ++ T +GWG T +G + L V + +V
Sbjct: 181 NNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ----RGFLARNLMYVDIPIVD 236
Query: 271 NQVCQAWYQSEGK-KINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVH 329
+Q C A Y+ + +V + +CAG E GGKD+C
Sbjct: 237 HQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSC------------------------- 271
Query: 330 WDPPLQADSGGPLMLLGAESTQ--VIGLVSTG-IGCARPRLPGLYTRLTRYIGWISDTL 385
+ DSGG L+ L +E+ + V G+VS G + C G+YT++ YI WI + +
Sbjct: 272 -----RGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 325
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGK-KINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES 64
L V + +V +Q C A Y+ + +V + +CAG E GGKD+C DSGG L+ L +E+
Sbjct: 227 LMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSET 286
Query: 65 TQ--VIGLVSTG 74
+ V G+VS G
Sbjct: 287 ERWFVGGIVSWG 298
>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|B Chain B, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|D Chain D, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|G Chain G, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
Length = 224
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 125/271 (46%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I EQW+V+AAHC ++I V L
Sbjct: 1 IVGGYTCEENSLPYQVSLNS-GYHFCGGSLISEQWVVSAAHCY--------KTRIQVRLG 51
Query: 177 EHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH++ + + +I+ HP ++ + +NDI L++L+ + + LP+
Sbjct: 52 EHNIKVLEGNEQFINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPA 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
+ + ++GWG N + L+ + V++ C+A Y + + S C
Sbjct: 112 AGTECL-ISGWG--NTLSFGADYPDELKCLDAPVLTQAECKASYPGK-----ITNSMFCV 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G +GGKD+C Q D+GGP++ G Q+ G
Sbjct: 164 GFLEGGKDSC------------------------------QRDAGGPVVCNG----QLQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA PG+YT++ Y+ WI DT+
Sbjct: 190 VVSWGHGCAWKNRPGVYTKVYNYVDWIKDTI 220
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
L+ + V++ C+A Y + + S C G +GGKD+C D+GGP++ G
Sbjct: 135 LKCLDAPVLTQAECKASYPGK-----ITNSMFCVGFLEGGKDSCQRDAGGPVVCNG---- 185
Query: 66 QVIGLVSTGIG 76
Q+ G+VS G G
Sbjct: 186 QLQGVVSWGHG 196
>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9Q|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 125/275 (45%), Gaps = 54/275 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
I+GG A P++ S++ +G H CGG ++ EQW+++AAHCL + + ++ V L
Sbjct: 1 ILGGREAEAHARPYMASVQVNGEHLCGGVLVAEQWVLSAAHCLEDA----ADGKVQVLLG 56
Query: 177 EHDLSRPSIST--VPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
H LS+P S VLR + HP + ++D+ LL+L+ +RP LP +D
Sbjct: 57 AHSLSQPEPSKRLYDVLRAVPHPDSRPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVD 114
Query: 235 YSEQSVT---VAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQ 291
+ T VAGWG + GRR + LQ V L V+ C +G + +
Sbjct: 115 RDVEPGTLCDVAGWGIVSH---AGRRPDRLQHVLLPVLDRATCNRRTHHDGA---ITQRM 168
Query: 292 MCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQ 351
MCA E +D+C + DSGGPL+ G
Sbjct: 169 MCA--ESNRRDSC------------------------------KGDSGGPLVCGGV---- 192
Query: 352 VIGLVSTGIG-CARPRLPGLYTRLTRYIGWISDTL 385
+ G+V++G C + PG+YTR+ Y WI L
Sbjct: 193 LEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
RR + LQ V L V+ C +G + + MCA E +D+C DSGGPL+
Sbjct: 136 RRPDRLQHVLLPVLDRATCNRRTHHDGA---ITQRMMCA--ESNRRDSCKGDSGGPLVCG 190
Query: 61 GAESTQVIGLVSTG 74
G + G+V++G
Sbjct: 191 GV----LEGVVTSG 200
>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
pdb|4B2A|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
Length = 223
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 122/270 (45%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSS-----CKSASSFIITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKDAC Q D+GGP++ G ++ G+
Sbjct: 165 YLEGGKDAC------------------------------QGDAGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 VSWGEGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ + CAG+ +GGKDAC D+GGP++ G ++ G+VS G G
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDAGGPVVCSG----KLQGIVSWGEG 196
>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1MH0|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
Length = 287
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 139/299 (46%), Gaps = 57/299 (19%)
Query: 109 LASRRTGKIVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--S 164
L S G+IV G A G PW V L R CG ++I ++W++TAAHCL P
Sbjct: 23 LESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDK 82
Query: 165 PLSASQINVTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWS 220
+ + + V + +H +R +I + +L +I HP ++ + + DIAL++L + + +S
Sbjct: 83 NFTENDLLVRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 142
Query: 221 DLIRPACLP----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQ 272
D I P CLP + SL + V GWG E N +G+ S +LQ V L +V
Sbjct: 143 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERP 201
Query: 273 VCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVH 329
VC+ + +I + ++ CAG+ ++G + DAC
Sbjct: 202 VCK-----DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------- 231
Query: 330 WDPPLQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
+ DSGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 232 -----EGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 188 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 242
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 243 SPFNNRWYQMGIVSWGEG 260
>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|B Chain B, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|C Chain C, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|D Chain D, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|E Chain E, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|F Chain F, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|G Chain G, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|H Chain H, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|I Chain I, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|J Chain J, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|K Chain K, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|L Chain L, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|M Chain M, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|N Chain N, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|O Chain O, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|P Chain P, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V12|A Chain A, Bovine Trypsin Variant X(tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V13|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 120/270 (44%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ + + C G
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSS-----CKSASSFIITSNMFCVG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKDAC Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDAC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG YT++ Y+ WI T+
Sbjct: 191 VSWGEGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ + C G+ +GGKDAC DSGGP++ G ++ G+VS G G
Sbjct: 156 ITSNMFCVGYLEGGKDACQGDSGGPVVCSG----KLQGIVSWGEG 196
>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel
Bicyclic Lactam Inhibitor
Length = 305
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 139/299 (46%), Gaps = 57/299 (19%)
Query: 109 LASRRTGKIVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--S 164
L S G+IV G A G PW V L R CG ++I ++W++TAAHCL P
Sbjct: 29 LESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDK 88
Query: 165 PLSASQINVTLKEHDLSR--PSISTVPVL-RIMFHPSHS-CSSFNNDIALLELTRSIQWS 220
+ + + V + +H +R +I + +L +I HP ++ + + DIAL++L + + +S
Sbjct: 89 NFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 148
Query: 221 DLIRPACLP----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQ 272
D I P CLP + SL + V GWG E N +G+ S +LQ V L +V
Sbjct: 149 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERP 207
Query: 273 VCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVH 329
VC+ + +I + ++ CAG+ ++G + DAC
Sbjct: 208 VCK-----DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------- 237
Query: 330 WDPPLQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
+ DSGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 238 -----EGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 291
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 194 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 248
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 249 SPFNNRWYQMGIVSWGEG 266
>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
Length = 308
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 133/292 (45%), Gaps = 55/292 (18%)
Query: 115 GKIVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQ 170
G+IV G A G PW V L R CG ++I ++W++TAAHCL P +
Sbjct: 48 GRIVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDD 107
Query: 171 INVTLKEHDLSR--PSISTVPVL-RIMFHPSHS-CSSFNNDIALLELTRSIQWSDLIRPA 226
+ V + +H +R + + +L +I HP ++ + + DIALL+L R I+ SD I P
Sbjct: 108 LLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPV 167
Query: 227 CLP----SGSLDYSEQSVTVAGWGWTNENPSQG---RRSNILQKVALSVVSNQVCQAWYQ 279
CLP + L ++ V GWG E + + ++LQ V L +V VC+A
Sbjct: 168 CLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKA--- 224
Query: 280 SEGKKINVKESQMCAGHEQG-GK--DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQA 336
+I + ++ CAG++ G GK DAC +
Sbjct: 225 --STRIRITDNMFCAGYKPGEGKRGDAC------------------------------EG 252
Query: 337 DSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
DSGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 253 DSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 304
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQG-GK--DACWADSGGPLMLL 60
++LQ V L +V VC+A +I + ++ CAG++ G GK DAC DSGGP ++
Sbjct: 207 SVLQVVNLPLVERPVCKA-----STRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMK 261
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 262 SPYNNRWYQMGIVSWGEG 279
>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
pdb|1EOL|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
Length = 289
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 139/299 (46%), Gaps = 57/299 (19%)
Query: 109 LASRRTGKIVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--S 164
L S G+IV G A G PW V L R CG ++I ++W++TAAHCL P
Sbjct: 25 LESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDK 84
Query: 165 PLSASQINVTLKEHDLSR--PSISTVPVL-RIMFHPSHS-CSSFNNDIALLELTRSIQWS 220
+ + + V + +H +R +I + +L +I HP ++ + + DIAL++L + + +S
Sbjct: 85 NFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 144
Query: 221 DLIRPACLP----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQ 272
D I P CLP + SL + V GWG E N +G+ S +LQ V L +V
Sbjct: 145 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERP 203
Query: 273 VCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVH 329
VC+ + +I + ++ CAG+ ++G + DAC
Sbjct: 204 VCK-----DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------- 233
Query: 330 WDPPLQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
+ DSGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 234 -----EGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 287
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 190 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 244
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 245 SPFNNRWYQMGIVSWGEG 262
>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1DOJ|A Chain A, Crystal Structure Of Human Alpha-ThrombinRwj-51438 Complex
At 1.7 A
pdb|1XM1|A Chain A, Nonbasic Thrombin Inhibitor Complex
Length = 295
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 139/299 (46%), Gaps = 57/299 (19%)
Query: 109 LASRRTGKIVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--S 164
L S G+IV G A G PW V L R CG ++I ++W++TAAHCL P
Sbjct: 29 LESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDK 88
Query: 165 PLSASQINVTLKEHDLSR--PSISTVPVL-RIMFHPSHS-CSSFNNDIALLELTRSIQWS 220
+ + + V + +H +R +I + +L +I HP ++ + + DIAL++L + + +S
Sbjct: 89 NFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 148
Query: 221 DLIRPACLP----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQ 272
D I P CLP + SL + V GWG E N +G+ S +LQ V L +V
Sbjct: 149 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERP 207
Query: 273 VCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVH 329
VC+ + +I + ++ CAG+ ++G + DAC
Sbjct: 208 VCK-----DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------- 237
Query: 330 WDPPLQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
+ DSGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 238 -----EGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 291
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 194 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 248
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 249 SPFNNRWYQMGIVSWGEG 266
>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
At 1.8a
pdb|1NT1|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
pdb|1TA2|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 1
pdb|1TA6|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 14b
pdb|1SL3|A Chain A, Crystal Structue Of Thrombin In Complex With A Potent P1
Heterocycle- Aryl Based Inhibitor
pdb|1Z71|A Chain A, Thrombin And P2 Pyridine N-oxide Inhibitor Complex
Structure
pdb|1ZRB|A Chain A, Thrombin In Complex With An Azafluorenyl Inhibitor 23b
pdb|1ZGI|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 21
pdb|1ZGV|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 2
pdb|3C1K|A Chain A, Crystal Structure Of Thrombin In Complex With Inhibitor 15
Length = 287
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 139/299 (46%), Gaps = 57/299 (19%)
Query: 109 LASRRTGKIVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--S 164
L S G+IV G A G PW V L R CG ++I ++W++TAAHCL P
Sbjct: 22 LESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDK 81
Query: 165 PLSASQINVTLKEHDLSR--PSISTVPVL-RIMFHPSHS-CSSFNNDIALLELTRSIQWS 220
+ + + V + +H +R +I + +L +I HP ++ + + DIAL++L + + +S
Sbjct: 82 NFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 141
Query: 221 DLIRPACLP----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQ 272
D I P CLP + SL + V GWG E N +G+ S +LQ V L +V
Sbjct: 142 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERP 200
Query: 273 VCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVH 329
VC+ + +I + ++ CAG+ ++G + DAC
Sbjct: 201 VCK-----DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------- 230
Query: 330 WDPPLQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
+ DSGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 231 -----EGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 284
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 187 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 241
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 242 SPFNNRWYQMGIVSWGEG 259
>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor
Length = 289
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 139/299 (46%), Gaps = 57/299 (19%)
Query: 109 LASRRTGKIVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--S 164
L S G+IV G A G PW V L R CG ++I ++W++TAAHCL P
Sbjct: 23 LESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDK 82
Query: 165 PLSASQINVTLKEHDLSR--PSISTVPVL-RIMFHPSHS-CSSFNNDIALLELTRSIQWS 220
+ + + V + +H +R +I + +L +I HP ++ + + DIAL++L + + +S
Sbjct: 83 NFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 142
Query: 221 DLIRPACLP----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQ 272
D I P CLP + SL + V GWG E N +G+ S +LQ V L +V
Sbjct: 143 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERP 201
Query: 273 VCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVH 329
VC+ + +I + ++ CAG+ ++G + DAC
Sbjct: 202 VCK-----DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------- 231
Query: 330 WDPPLQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
+ DSGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 232 -----EGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 188 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 242
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 243 SPFNNRWYQMGIVSWGEG 260
>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex
pdb|1NU9|D Chain D, Staphylocoagulase-prethrombin-2 Complex
Length = 291
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 139/299 (46%), Gaps = 57/299 (19%)
Query: 109 LASRRTGKIVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--S 164
L S G+IV G A G PW V L R CG ++I ++W++TAAHCL P
Sbjct: 25 LESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDK 84
Query: 165 PLSASQINVTLKEHDLSR--PSISTVPVL-RIMFHPSHS-CSSFNNDIALLELTRSIQWS 220
+ + + V + +H +R +I + +L +I HP ++ + + DIAL++L + + +S
Sbjct: 85 NFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 144
Query: 221 DLIRPACLP----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQ 272
D I P CLP + SL + V GWG E N +G+ S +LQ V L +V
Sbjct: 145 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERP 203
Query: 273 VCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVH 329
VC+ + +I + ++ CAG+ ++G + DAC
Sbjct: 204 VCK-----DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------- 233
Query: 330 WDPPLQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
+ DSGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 234 -----EGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 287
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 190 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 244
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 245 SPFNNRWYQMGIVSWGEG 262
>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electrophilic Inhibitors Having Cyclohexyl Moieties
At P1
pdb|1G37|A Chain A, Crystal Structure Of Human Alpha-thrombin Complexed With
Bch-10556 And Exosite-directed Peptide
Length = 287
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 139/299 (46%), Gaps = 57/299 (19%)
Query: 109 LASRRTGKIVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--S 164
L S G+IV G A G PW V L R CG ++I ++W++TAAHCL P
Sbjct: 23 LESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDK 82
Query: 165 PLSASQINVTLKEHDLSR--PSISTVPVL-RIMFHPSHS-CSSFNNDIALLELTRSIQWS 220
+ + + V + +H +R +I + +L +I HP ++ + + DIAL++L + + +S
Sbjct: 83 NFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 142
Query: 221 DLIRPACLP----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQ 272
D I P CLP + SL + V GWG E N +G+ S +LQ V L +V
Sbjct: 143 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERP 201
Query: 273 VCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVH 329
VC+ + +I + ++ CAG+ ++G + DAC
Sbjct: 202 VCK-----DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------- 231
Query: 330 WDPPLQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
+ DSGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 232 -----EGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 188 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 242
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 243 SPFNNRWYQMGIVSWGEG 260
>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electophilic Inhibitors Having Cyclohexyl Moieties
At P1
Length = 288
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 139/299 (46%), Gaps = 57/299 (19%)
Query: 109 LASRRTGKIVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--S 164
L S G+IV G A G PW V L R CG ++I ++W++TAAHCL P
Sbjct: 23 LESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDK 82
Query: 165 PLSASQINVTLKEHDLSR--PSISTVPVL-RIMFHPSHS-CSSFNNDIALLELTRSIQWS 220
+ + + V + +H +R +I + +L +I HP ++ + + DIAL++L + + +S
Sbjct: 83 NFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 142
Query: 221 DLIRPACLP----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQ 272
D I P CLP + SL + V GWG E N +G+ S +LQ V L +V
Sbjct: 143 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERP 201
Query: 273 VCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVH 329
VC+ + +I + ++ CAG+ ++G + DAC
Sbjct: 202 VCK-----DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------- 231
Query: 330 WDPPLQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
+ DSGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 232 -----EGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 188 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 242
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 243 SPFNNRWYQMGIVSWGEG 260
>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 254
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 127/277 (45%), Gaps = 46/277 (16%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG GE PW V L +G CGGT+I+ W+V+AAHC + + L
Sbjct: 1 IVGGKDCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCF---DKIKNWRNLIAVLG 57
Query: 177 EHDLSRP--SISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EHDLS + V +++ ++ + N+DIALL L + + +D + P CLP +
Sbjct: 58 EHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERT-- 115
Query: 235 YSEQSVT------VAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVK 288
+SE+++ V+GWG + +G + +LQ + + + Q C + G N+
Sbjct: 116 FSERTLAFVRFSLVSGWG---QLLDRGATALVLQVLNVPRLMTQDCLQQSRKVGDSPNIT 172
Query: 289 ESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAE 348
E CAG+ G KD+C + DSGGP
Sbjct: 173 EYMFCAGYSDGSKDSC------------------------------KGDSGGPHATHYRG 202
Query: 349 STQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+ + G+VS G GCA G+YTR+++YI W+ +
Sbjct: 203 TWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLM 239
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 5 ILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES 64
+LQ + + + Q C + G N+ E CAG+ G KD+C DSGGP +
Sbjct: 144 VLQVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGT 203
Query: 65 TQVIGLVSTGIGSPT 79
+ G+VS G G T
Sbjct: 204 WYLTGIVSWGQGCAT 218
>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To
D-Phe-Pro-Arg- Chloromethylketone
pdb|3S7H|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|D Chain D, Structure Of Thrombin Mutant Y225p In The E Form
Length = 259
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 136/291 (46%), Gaps = 57/291 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQAD 337
+ +I + ++ CAG+ ++G + DAC + D
Sbjct: 175 DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EGD 204
Query: 338 SGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
SGGP ++ + + +G+VS G GC R PG YT + R WI +D
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKPGFYTHVFRLKKWIQKVID 255
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-2
Length = 403
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 143/299 (47%), Gaps = 51/299 (17%)
Query: 97 SSPIAGVPCGRSLASRRTG-KIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTA 155
S P+ CG L++R TG +I GG A PG+FPW V + GG G ++++ W++TA
Sbjct: 143 SLPVCEPVCG--LSARTTGGQIYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTA 198
Query: 156 AHCLCNGPSPLSASQINV-TLKEHDLSRPSISTVPVLRIMFHPSHSCSS-FNNDIALLEL 213
AH + SA I + TLK LS P + + H ++ + F+NDIAL++L
Sbjct: 199 AHAVYEQKHDASALDIRMGTLKR--LS-PHYTQAWSEAVFIHEGYTHDAGFDNDIALIKL 255
Query: 214 TRSIQWSDLIRPACLP---SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVS 270
+ + I P CLP + S ++ T +GWG T +G + L V + +V
Sbjct: 256 NNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ----RGFLARNLMYVDIPIVD 311
Query: 271 NQVCQAWYQSEGK-KINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVH 329
+Q C A Y+ + +V + +CAG E GGKD+C
Sbjct: 312 HQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSC------------------------- 346
Query: 330 WDPPLQADSGGPLMLLGAESTQ--VIGLVSTG-IGCARPRLPGLYTRLTRYIGWISDTL 385
+ DSGG L+ L +E+ + V G+VS G + C G+YT++ YI WI + +
Sbjct: 347 -----RGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 400
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGK-KINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES 64
L V + +V +Q C A Y+ + +V + +CAG E GGKD+C DSGG L+ L +E+
Sbjct: 302 LMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSET 361
Query: 65 TQ--VIGLVSTG 74
+ V G+VS G
Sbjct: 362 ERWFVGGIVSWG 373
>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 119/270 (44%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++NNDI L++L + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSETYNNDIMLIKLKSAASLXSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ + + C G
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSS-----CKSASSFIITSNMFCVG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKDAC Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDAC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG YT++ Y+ WI T+
Sbjct: 191 VSWGEGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ + C G+ +GGKDAC DSGGP++ G ++ G+VS G G
Sbjct: 156 ITSNMFCVGYLEGGKDACQGDSGGPVVCSG----KLQGIVSWGEG 196
>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1
Length = 424
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 139/299 (46%), Gaps = 57/299 (19%)
Query: 109 LASRRTGKIVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--S 164
L S G+IV G A G PW V L R CG ++I ++W++TAAHCL P
Sbjct: 158 LESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDK 217
Query: 165 PLSASQINVTLKEHDLSR--PSISTVPVL-RIMFHPSHS-CSSFNNDIALLELTRSIQWS 220
+ + + V + +H +R +I + +L +I HP ++ + + DIAL++L + + +S
Sbjct: 218 NFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 277
Query: 221 DLIRPACLP----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQ 272
D I P CLP + SL + V GWG E N +G+ S +LQ V L +V
Sbjct: 278 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERP 336
Query: 273 VCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVH 329
VC+ + +I + ++ CAG+ ++G + DAC
Sbjct: 337 VCK-----DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------- 366
Query: 330 WDPPLQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
+ DSGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 367 -----EGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 420
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 323 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 377
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 378 SPFNNRWYQMGIVSWGEG 395
>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Ssfi.Glu)bt.D1
pdb|1V2T|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(ssfi.glu)bt.b4
Length = 223
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 122/270 (45%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++ NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSS-----CKSASSFIITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKD+C Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDSC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 VSWGEGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ + CAG+ +GGKD+C DSGGP++ G ++ G+VS G G
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGEG 196
>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex
Length = 308
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 139/299 (46%), Gaps = 57/299 (19%)
Query: 109 LASRRTGKIVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--S 164
L S G+IV G A G PW V L R CG ++I ++W++TAAHCL P
Sbjct: 42 LESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDK 101
Query: 165 PLSASQINVTLKEHDLSR--PSISTVPVL-RIMFHPSHS-CSSFNNDIALLELTRSIQWS 220
+ + + V + +H +R +I + +L +I HP ++ + + DIAL++L + + +S
Sbjct: 102 NFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 161
Query: 221 DLIRPACLP----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQ 272
D I P CLP + SL + V GWG E N +G+ S +LQ V L +V
Sbjct: 162 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERP 220
Query: 273 VCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVH 329
VC+ + +I + ++ CAG+ ++G + DAC
Sbjct: 221 VCK-----DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------- 250
Query: 330 WDPPLQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
+ D+GGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 251 -----EGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 304
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC D+GGP ++
Sbjct: 207 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMK 261
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 262 SPFNNRWYQMGIVSWGEG 279
>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The
Alternative Form
pdb|3SQH|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The The
Open Form
Length = 290
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 139/299 (46%), Gaps = 57/299 (19%)
Query: 109 LASRRTGKIVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--S 164
L S G+IV G A G PW V L R CG ++I ++W++TAAHCL P
Sbjct: 24 LESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDK 83
Query: 165 PLSASQINVTLKEHDLSR--PSISTVPVL-RIMFHPSHS-CSSFNNDIALLELTRSIQWS 220
+ + + V + +H +R +I + +L +I HP ++ + + DIAL++L + + +S
Sbjct: 84 NFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 143
Query: 221 DLIRPACLP----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQ 272
D I P CLP + SL + V GWG E N +G+ S +LQ V L +V
Sbjct: 144 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERP 202
Query: 273 VCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVH 329
VC+ + +I + ++ CAG+ ++G + DAC
Sbjct: 203 VCK-----DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------- 232
Query: 330 WDPPLQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
+ D+GGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 233 -----EGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 286
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC D+GGP ++
Sbjct: 189 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMK 243
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 244 SPFNNRWYQMGIVSWGEG 261
>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.B4
pdb|1V2P|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.A4
Length = 223
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 122/270 (45%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++ NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSS-----CKSASSYIITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKD+C Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDSC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 VSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ + CAG+ +GGKD+C DSGGP++ G ++ G+VS G G
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSG 196
>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor
Complexed With Bovine Trypsin
Length = 220
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 125/270 (46%), Gaps = 54/270 (20%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++ NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ C++ Y + + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
E G D+C Q DSGGP++ G ++ G+
Sbjct: 165 LE--GGDSC------------------------------QGDSGGPVVCSG----KLQGI 188
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ + PG+YT++ Y+ WI T+
Sbjct: 189 VSWGSGCAKNK-PGVYTKVCNYVSWIKQTI 217
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 11/73 (15%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++L+ + ++S+ C++ Y + + + CAG E G D+C DSGGP++ G
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAGLE--GGDSCQGDSGGPVVCSG-- 183
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 184 --KLQGIVSWGSG 194
>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai)
Bt.D1
pdb|1V2V|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssai)
Bt.C1
pdb|1V2W|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssai)bt.B4
Length = 223
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 126/270 (46%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++ NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ C++ + + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSSCKSASSAI-----ITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKD+C Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDSC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 VSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ + CAG+ +GGKD+C DSGGP++ G ++ G+VS G G
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSG 196
>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri)
Bt.C1
pdb|1V2R|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssri)bt.B4
Length = 223
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 126/270 (46%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++ NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S + +S +I + + CAG
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILS----DSSCKSASSRI-ITSNMFCAG 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+ +GGKD+C Q DSGGP++ G ++ G+
Sbjct: 165 YLEGGKDSC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 191 VSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ + CAG+ +GGKD+C DSGGP++ G ++ G+VS G G
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSG 196
>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K
Length = 259
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 136/291 (46%), Gaps = 57/291 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQAD 337
+ +I + ++ CAG+ ++G + DAC + D
Sbjct: 175 DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EGD 204
Query: 338 SGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
SGGP ++ + + +G+VS G GCAR G YT + R WI +D
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSWGEGCARKGKYGFYTHVFRLKKWIQKVID 255
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Sswi)bt.B4
Length = 223
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 122/271 (45%), Gaps = 53/271 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++ NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNEN-PSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
Q + ++GWG T + S L+ LS S + +W + + CA
Sbjct: 113 GTQCL-ISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSWI--------ITSNMFCA 163
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G+ +GGKD+C Q DSGGP++ G ++ G
Sbjct: 164 GYLEGGKDSC------------------------------QGDSGGPVVCSG----KLQG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+VS G GCA+ PG+YT++ Y+ WI T+
Sbjct: 190 IVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ + CAG+ +GGKD+C DSGGP++ G ++ G+VS G G
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSG 196
>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ0|D Chain D, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ7|B Chain B, Crystal Structure Of The Anticoagulant Thrombin Mutant
W215aE217A Bound To Ppack
Length = 257
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 135/291 (46%), Gaps = 57/291 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQAD 337
+ +I + ++ CAG+ ++G + DAC + D
Sbjct: 175 DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EGD 204
Query: 338 SGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
SGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSAGAG 230
>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN
Thrombin (Space Group P2(1)2(1)2(1))
pdb|3HKJ|B Chain B, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
pdb|3HKJ|E Chain E, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
Length = 259
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 135/291 (46%), Gaps = 57/291 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHS-CSSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQAD 337
+ +I + ++ CAG+ ++G + DAC + D
Sbjct: 175 DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EGD 204
Query: 338 SGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
SGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSAGAG 230
>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21
pdb|2BQ7|B Chain B, Crystal Structure Of Factor Xa In Complex With 43
pdb|2BQW|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound 45
Length = 249
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 130/279 (46%), Gaps = 55/279 (19%)
Query: 116 KIVGGLAANPGEFPW-IVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVT 174
+IVGG GE PW + + FCGGTI+ E +I+TAAHCL A + V
Sbjct: 15 RIVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL------YQAKRFKVR 68
Query: 175 LKEHDLSR----PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLP- 229
+ + + + ++ V V ++ H + +++ DIA+L L I + + PACLP
Sbjct: 69 VGDRNTEQEEGGEAVHEVEV--VIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPE 126
Query: 230 ---SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKIN 286
+ S ++++ V+G+G T+E +GR+S L+ + + V C+
Sbjct: 127 RDWAESTLMTQKTGIVSGFGRTHE---KGRQSTRLKMLEVPYVDRNSCKL-----SSSFI 178
Query: 287 VKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLG 346
+ ++ CAG++ +DAC Q DSGGP +
Sbjct: 179 ITQNMFCAGYDTKQEDAC------------------------------QGDSGGPHVTRF 208
Query: 347 AESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
++ V G+VS G GCAR G+YT++T ++ WI ++
Sbjct: 209 KDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 247
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R+S L+ + + V C+ + ++ CAG++ +DAC DSGGP +
Sbjct: 153 RQSTRLKMLEVPYVDRNSCKL-----SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTR 207
Query: 61 GAESTQVIGLVSTGIG 76
++ V G+VS G G
Sbjct: 208 FKDTYFVTGIVSWGEG 223
>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To
Ppack
Length = 259
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 136/291 (46%), Gaps = 57/291 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQAD 337
+ +I + ++ CAG+ ++G + DAC +AD
Sbjct: 175 DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EAD 204
Query: 338 SGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
SGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC ADSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEADSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
pdb|1BTH|K Chain K, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 259
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 136/292 (46%), Gaps = 59/292 (20%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWG-----WTNENPSQGRRSNILQKVALSVVSNQVCQAWYQ 279
P + SL + V GWG WT N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTT-NVGKGQPS-VLQVVNLPIVERPVCK---- 174
Query: 280 SEGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQA 336
+ +I + ++ CAG+ ++G + DAC Q
Sbjct: 175 -DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------QG 203
Query: 337 DSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
DSGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 204 DSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACQGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M
Proneurosin
Length = 223
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 122/275 (44%), Gaps = 59/275 (21%)
Query: 116 KIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
K+V G + P+ +L G CGG +IH W++TAAHC + V L
Sbjct: 1 KLVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHC--------KKPNLQVFL 52
Query: 176 KEHDL--SRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
+H+L S V+R + HP + +S + DI LL L R + S+LI+P L
Sbjct: 53 GKHNLRQQESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPL---ER 109
Query: 234 DYSEQSVT--VAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQ 291
D S Q+ + + GWG T + G + +Q + +VS + C+ Y + + ++
Sbjct: 110 DCSAQTTSCHILGWGKT----ADGDFPDTIQCAYIHLVSREECEHAYPGQ-----ITQNM 160
Query: 292 MCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQ 351
+CAG E+ GKD+C Q DSGGPL+
Sbjct: 161 LCAGDEKYGKDSC------------------------------QGDSGGPLVC----GDH 186
Query: 352 VIGLVSTG-IGCARPRLPGLYTRLTRYIGWISDTL 385
+ GLVS G I C PG+YT + RY WI T+
Sbjct: 187 LRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTI 221
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
+ +Q + +VS + C+ Y + + ++ +CAG E+ GKD+C DSGGPL+
Sbjct: 133 DTIQCAYIHLVSREECEHAYPGQ-----ITQNMLCAGDEKYGKDSCQGDSGGPLVC---- 183
Query: 64 STQVIGLVSTG 74
+ GLVS G
Sbjct: 184 GDHLRGLVSWG 194
>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight
Into Structural Radiation Damage
Length = 223
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 121/270 (44%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSP-LSASQINVTL 175
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC +G L INV
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
S S V HPS++ ++ NNDI L++L + + + LP+
Sbjct: 60 GNEQFISASKSIV-------HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASA 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
Q + ++GWG N S ++L+ + ++S+ C++ Y + + + CA
Sbjct: 113 GTQCL-ISGWG--NTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAY 164
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
+G D+C Q DSGGP++ G ++ G+
Sbjct: 165 GLEGKGDSC------------------------------QGDSGGPVVCSG----KLQGI 190
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G GC PG+YT++ Y+ WI T+
Sbjct: 191 VSWGSGCQAKNKPGVYTKVCNYVSWIKQTI 220
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++L+ + ++S+ C++ Y + + + CA +G D+C DSGGP++ G
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAYGLEGKGDSCQGDSGGPVVCSG-- 185
Query: 64 STQVIGLVSTGIG 76
++ G+VS G G
Sbjct: 186 --KLQGIVSWGSG 196
>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease
Inhibitor Ecotin
Length = 256
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 131/290 (45%), Gaps = 55/290 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + +
Sbjct: 1 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHS-CSSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R + + +L +I HP ++ + + DIALL+L R I+ SD I P CL
Sbjct: 61 VRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNENPSQG---RRSNILQKVALSVVSNQVCQAWYQSE 281
P + L ++ V GWG E + + ++LQ V L +V VC+A
Sbjct: 121 PDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKA----- 175
Query: 282 GKKINVKESQMCAGHEQG-GK--DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADS 338
+I + ++ CAG++ G GK DAC + DS
Sbjct: 176 STRIRITDNMFCAGYKPGEGKRGDAC------------------------------EGDS 205
Query: 339 GGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
GGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 206 GGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQG-GK--DACWADSGGPLMLL 60
++LQ V L +V VC+A +I + ++ CAG++ G GK DAC DSGGP ++
Sbjct: 158 SVLQVVNLPLVERPVCKA-----STRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPYNNRWYQMGIVSWGEG 230
>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1BBR|N Chain N, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1ETR|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETS|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETT|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1HRT|H Chain H, The Structure Of A Complex Of Bovine Alpha-Thrombin And
Recombinant Hirudin At 2.8 Angstroms Resolution
pdb|1TBR|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBR|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1UCY|K Chain K, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1UCY|N Chain N, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|H Chain H, Thrombin:hirudin 51-65 Complex
pdb|1MKW|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1TOC|B Chain B, Structure Of Serine Proteinase
pdb|1TOC|D Chain D, Structure Of Serine Proteinase
pdb|1TOC|F Chain F, Structure Of Serine Proteinase
pdb|1TOC|H Chain H, Structure Of Serine Proteinase
pdb|1UVT|H Chain H, Bovine Thrombin--Bm14.1248 Complex
pdb|1UVU|H Chain H, Bovine Thrombin--Bm12.1700 Complex
pdb|1YCP|H Chain H, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
pdb|1A0H|B Chain B, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1A0H|E Chain E, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1AVG|H Chain H, Thrombin Inhibitor From Triatoma Pallidipennis
pdb|2A1D|B Chain B, Staphylocoagulase Bound To Bovine Thrombin
pdb|2A1D|F Chain F, Staphylocoagulase Bound To Bovine Thrombin
pdb|2ODY|B Chain B, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|2ODY|D Chain D, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|3PMA|B Chain B, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMA|D Chain D, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMB|B Chain B, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
pdb|3PMB|D Chain D, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
Length = 259
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 131/290 (45%), Gaps = 55/290 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + +
Sbjct: 1 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHS-CSSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R + + +L +I HP ++ + + DIALL+L R I+ SD I P CL
Sbjct: 61 VRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNENPSQG---RRSNILQKVALSVVSNQVCQAWYQSE 281
P + L ++ V GWG E + + ++LQ V L +V VC+A
Sbjct: 121 PDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKA----- 175
Query: 282 GKKINVKESQMCAGHEQG-GK--DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADS 338
+I + ++ CAG++ G GK DAC + DS
Sbjct: 176 STRIRITDNMFCAGYKPGEGKRGDAC------------------------------EGDS 205
Query: 339 GGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
GGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 206 GGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQG-GK--DACWADSGGPLMLL 60
++LQ V L +V VC+A +I + ++ CAG++ G GK DAC DSGGP ++
Sbjct: 158 SVLQVVNLPLVERPVCKA-----STRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPYNNRWYQMGIVSWGEG 230
>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1QFK|H Chain H, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
pdb|1CVW|H Chain H, Crystal Structure Of Active Site-inhibited Human
Coagulation Factor Viia (des-gla)
pdb|1FAK|H Chain H, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1DVA|H Chain H, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|I Chain I, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1JBU|H Chain H, Coagulation Factor Vii Zymogen (Egf2PROTEASE) IN COMPLEX
WITH Inhibitory Exosite Peptide A-183
pdb|1KLI|H Chain H, Cofactor-And Substrate-Assisted Activation Of Factor Viia
pdb|1KLJ|H Chain H, Crystal Structure Of Uninhibited Factor Viia
pdb|1J9C|H Chain H, Crystal Structure Of Tissue Factor-Factor Viia Complex
pdb|1W0Y|H Chain H, Tf7a_3771 Complex
pdb|1YGC|H Chain H, Short Factor Viia With A Small Molecule Inhibitor
pdb|1Z6J|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|1W2K|H Chain H, Tf7a_4380 Complex
pdb|1WQV|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1W7X|H Chain H, Factor7- 413 Complex
pdb|1W8B|H Chain H, Factor7 - 413 Complex
pdb|1WSS|H Chain H, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|H Chain H, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2B7D|H Chain H, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|H Chain H, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|H Chain H, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2A2Q|H Chain H, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AER|H Chain H, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2AEI|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2FIR|H Chain H, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|H Chain H, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2FLR|H Chain H, Novel 5-azaindole Factor Viia Inhibitors
pdb|2B8O|H Chain H, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2PUQ|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
pdb|2EC9|H Chain H, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|2ZP0|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|H Chain H, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
pdb|3TH2|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|1O5D|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2BZ6|H Chain H, Orally Available Factor7a Inhibitor
pdb|4ISI|H Chain H, Structure Of Factor Viia In Complex With The Inhibitor
(6s)-n-(4-
Carbamimidoylbenzyl)-1-chloro-3-(cyclobutylamino)-8,
8-diethyl-4-oxo-
4,6,7,8-tetrahydropyrrolo[1,2-a]pyrazine-6-carboxamide
Length = 254
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 127/279 (45%), Gaps = 50/279 (17%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG GE PW V L +G CGGT+I+ W+V+AAHC + + L
Sbjct: 1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCF---DKIKNWRNLIAVLG 57
Query: 177 EHDLSRP--SISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EHDLS + V +++ ++ + N+DIALL L + + +D + P CLP +
Sbjct: 58 EHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERT-- 115
Query: 235 YSEQSVT------VAGWGWTNENPSQGRRSNILQKVALSV--VSNQVCQAWYQSEGKKIN 286
+SE+++ V+GWG + R + L+ + L+V + Q C + G N
Sbjct: 116 FSERTLAFVRFSLVSGWGQLLD-----RGATALELMVLNVPRLMTQDCLQQSRKVGDSPN 170
Query: 287 VKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLG 346
+ E CAG+ G KD+C + DSGGP
Sbjct: 171 ITEYMFCAGYSDGSKDSC------------------------------KGDSGGPHATHY 200
Query: 347 AESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+ + G+VS G GCA G+YTR+++YI W+ +
Sbjct: 201 RGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLM 239
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 1 RRSNILQKVALSV--VSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLM 58
R + L+ + L+V + Q C + G N+ E CAG+ G KD+C DSGGP
Sbjct: 138 RGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHA 197
Query: 59 LLGAESTQVIGLVSTGIGSPT 79
+ + G+VS G G T
Sbjct: 198 THYRGTWYLTGIVSWGQGCAT 218
>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|D Chain D, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1G2L|A Chain A, Factor Xa Inhibitor Complex
pdb|1G2M|A Chain A, Factor Xa Inhibitor Complex
pdb|1IOE|A Chain A, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|A Chain A, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|A Chain A, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|A Chain A, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|A Chain A, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|A Chain A, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|A Chain A, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|A Chain A, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|A Chain A, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|A Chain A, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|A Chain A, Human Coagulation Factor Xa In Complex With M55192
pdb|2P3F|H Chain H, Crystal Structure Of The Factor XaNAP5 COMPLEX
Length = 235
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 129/278 (46%), Gaps = 55/278 (19%)
Query: 117 IVGGLAANPGEFPW-IVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
IVGG GE PW + + FCGGTI+ E +I+TAAHCL A + V +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL------YQAKRFKVRV 54
Query: 176 KEHDLSR----PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLP-- 229
+ + + ++ V V ++ H + +++ DIA+L L I + + PACLP
Sbjct: 55 GDRNTEQEEGGEAVHEVEV--VIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 230 --SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINV 287
+ S ++++ V+G+G T+E +GR+S L+ + + V C+ +
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTHE---KGRQSTRLKMLEVPYVDRNSCKL-----SSSFII 164
Query: 288 KESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGA 347
++ CAG++ +DAC Q DSGGP +
Sbjct: 165 TQNMFCAGYDTKQEDAC------------------------------QGDSGGPHVTRFK 194
Query: 348 ESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
++ V G+VS G GCAR G+YT++T ++ WI ++
Sbjct: 195 DTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R+S L+ + + V C+ + ++ CAG++ +DAC DSGGP +
Sbjct: 138 RQSTRLKMLEVPYVDRNSCKL-----SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTR 192
Query: 61 GAESTQVIGLVSTGIG 76
++ V G+VS G G
Sbjct: 193 FKDTYFVTGIVSWGEG 208
>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|D Chain D, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|B Chain B, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|D Chain D, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|D Chain D, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 238
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 129/278 (46%), Gaps = 55/278 (19%)
Query: 117 IVGGLAANPGEFPW-IVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
IVGG GE PW + + FCGGTI+ E +I+TAAHCL A + V +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL------YQAKRFKVRV 54
Query: 176 KEHDLSR----PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLP-- 229
+ + + ++ V V ++ H + +++ DIA+L L I + + PACLP
Sbjct: 55 GDRNTEQEEGGEAVHEVEV--VIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 230 --SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINV 287
+ S ++++ V+G+G T+E +GR+S L+ + + V C+ +
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTHE---KGRQSTRLKMLEVPYVDRNSCKL-----SSSFII 164
Query: 288 KESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGA 347
++ CAG++ +DAC Q DSGGP +
Sbjct: 165 TQNMFCAGYDTKQEDAC------------------------------QGDSGGPHVTRFK 194
Query: 348 ESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
++ V G+VS G GCAR G+YT++T ++ WI ++
Sbjct: 195 DTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R+S L+ + + V C+ + ++ CAG++ +DAC DSGGP +
Sbjct: 138 RQSTRLKMLEVPYVDRNSCKL-----SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTR 192
Query: 61 GAESTQVIGLVSTGIG 76
++ V G+VS G G
Sbjct: 193 FKDTYFVTGIVSWGEG 208
>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFU|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
pdb|1NFW|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|B Chain B, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|B Chain B, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|B Chain B, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|B Chain B, Crystal Structure Of Fxa In Complex With 45.
pdb|1P0S|H Chain H, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
pdb|2BOH|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|A Chain A, Factor Xa Inhibitor Complex
pdb|2VH0|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|A Chain A, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|4A7I|B Chain B, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 254
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 129/278 (46%), Gaps = 55/278 (19%)
Query: 117 IVGGLAANPGEFPW-IVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
IVGG GE PW + + FCGGTI+ E +I+TAAHCL A + V +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL------YQAKRFKVRV 54
Query: 176 KEHDLSR----PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLP-- 229
+ + + ++ V V ++ H + +++ DIA+L L I + + PACLP
Sbjct: 55 GDRNTEQEEGGEAVHEVEV--VIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 230 --SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINV 287
+ S ++++ V+G+G T+E +GR+S L+ + + V C+ +
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTHE---KGRQSTRLKMLEVPYVDRNSCKL-----SSSFII 164
Query: 288 KESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGA 347
++ CAG++ +DAC Q DSGGP +
Sbjct: 165 TQNMFCAGYDTKQEDAC------------------------------QGDSGGPHVTRFK 194
Query: 348 ESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
++ V G+VS G GCAR G+YT++T ++ WI ++
Sbjct: 195 DTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R+S L+ + + V C+ + ++ CAG++ +DAC DSGGP +
Sbjct: 138 RQSTRLKMLEVPYVDRNSCKL-----SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTR 192
Query: 61 GAESTQVIGLVSTGIG 76
++ V G+VS G G
Sbjct: 193 FKDTYFVTGIVSWGEG 208
>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
Length = 255
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 129/278 (46%), Gaps = 55/278 (19%)
Query: 117 IVGGLAANPGEFPW-IVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
IVGG GE PW + + FCGGTI+ E +I+TAAHCL A + V +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL------YQAKRFKVRV 54
Query: 176 KEHDLSR----PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLP-- 229
+ + + ++ V V ++ H + +++ DIA+L L I + + PACLP
Sbjct: 55 GDRNTEQEEGGEAVHEVEV--VIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 230 --SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINV 287
+ S ++++ V+G+G T+E +GR+S L+ + + V C+ +
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTHE---KGRQSTRLKMLEVPYVDRNSCKL-----SSSFII 164
Query: 288 KESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGA 347
++ CAG++ +DAC Q DSGGP +
Sbjct: 165 TQNMFCAGYDTKQEDAC------------------------------QGDSGGPHVTRFK 194
Query: 348 ESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
++ V G+VS G GCAR G+YT++T ++ WI ++
Sbjct: 195 DTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R+S L+ + + V C+ + ++ CAG++ +DAC DSGGP +
Sbjct: 138 RQSTRLKMLEVPYVDRNSCKL-----SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTR 192
Query: 61 GAESTQVIGLVSTGIG 76
++ V G+VS G G
Sbjct: 193 FKDTYFVTGIVSWGEG 208
>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms
Resolution
pdb|3KL6|A Chain A, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative
Tak-44 Potent, Selective And Orally Active Factor Xa
Inhibitor
pdb|2XBW|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 129/278 (46%), Gaps = 55/278 (19%)
Query: 117 IVGGLAANPGEFPW-IVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
IVGG GE PW + + FCGGTI+ E +I+TAAHCL A + V +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL------YQAKRFKVRV 54
Query: 176 KEHDLSR----PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLP-- 229
+ + + ++ V V ++ H + +++ DIA+L L I + + PACLP
Sbjct: 55 GDRNTEQEEGGEAVHEVEV--VIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 230 --SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINV 287
+ S ++++ V+G+G T+E +GR+S L+ + + V C+ +
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTHE---KGRQSTRLKMLEVPYVDRNSCKL-----SSSFII 164
Query: 288 KESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGA 347
++ CAG++ +DAC Q DSGGP +
Sbjct: 165 TQNMFCAGYDTKQEDAC------------------------------QGDSGGPHVTRFK 194
Query: 348 ESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
++ V G+VS G GCAR G+YT++T ++ WI ++
Sbjct: 195 DTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R+S L+ + + V C+ + ++ CAG++ +DAC DSGGP +
Sbjct: 138 RQSTRLKMLEVPYVDRNSCKL-----SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTR 192
Query: 61 GAESTQVIGLVSTGIG 76
++ V G+VS G G
Sbjct: 193 FKDTYFVTGIVSWGEG 208
>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With
D-Phe-Pro-Arg- Chloromethylketone
Length = 228
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 125/274 (45%), Gaps = 55/274 (20%)
Query: 117 IVGGLAANPGEFPW-IVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
IVGG GE PW + + FCGGTI+ E +I+TAAHCL A + V +
Sbjct: 1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCL------YQAKRFKVRV 54
Query: 176 KEHDLSR----PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSG 231
+ + + ++ V V ++ H + +++ DIA+L L I + + PA LP+
Sbjct: 55 GDRNTEQEEGGEAVHEVEV--VIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTA 112
Query: 232 SLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQ 291
+ + ++GWG N S + LQ + V+S C+A Y + + +
Sbjct: 113 PPATGTKCL-ISGWG--NTASSGADYPDELQCLDAPVLSQAKCEASYPGK-----ITSNM 164
Query: 292 MCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQ 351
C G +GGKD+C Q DSGGP++ G Q
Sbjct: 165 FCVGFLEGGKDSC------------------------------QGDSGGPVVCNG----Q 190
Query: 352 VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+ G+VS G GCA+ PG+YT++ Y+ WI +T+
Sbjct: 191 LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTI 224
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
LQ + V+S C+A Y + + + C G +GGKD+C DSGGP++ G
Sbjct: 139 LQCLDAPVLSQAKCEASYPGK-----ITSNMFCVGFLEGGKDSCQGDSGGPVVCNG---- 189
Query: 66 QVIGLVSTGIG 76
Q+ G+VS G G
Sbjct: 190 QLQGVVSWGDG 200
>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031)
Complexed With Factor Xa
pdb|1Z6E|A Chain A, Factor Xa In Complex With The Inhibitor
1-(3'-Amino-1,2-Benzisoxazol-
5'-Yl)-N-(4-(2'-((Dimethylamino)methyl)-1h-Imidazol-1-
Yl)-2-
Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-
Carboxamide (Razaxaban; Dpc906; Bms-561389)
pdb|2BMG|B Chain B, Crystal Structure Of Factor Xa In Complex With 50
pdb|2FZZ|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-Amino-1,2-
Benzisoxazol-5-Yl)-6-(2'-(((3r)-3-Hydroxy-1-
Pyrrolidinyl)
Methyl)-4-Biphenylyl)-3-(Trifluoromethyl)-1,4,5,6-
Tetrahydro-7h-Pyrazolo[3,4-C]pyridin-7-One
pdb|2G00|A Chain A, Factor Xa In Complex With The Inhibitor 3-(6-(2'-
((Dimethylamino)methyl)-4-Biphenylyl)-7-Oxo-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-
C]pyridin-1-Yl)benzamide
pdb|2P93|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-(2-(4-(2-
Oxopyridin-1(2h)-Yl)benzamido)ethyl)thiophene-2-
Carboxamide
pdb|2P94|A Chain A, Factor Xa In Complex With The Inhibitor
3-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido)cyclohexyl)-1h-
Indole-6-Carboxamide
pdb|2P95|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido) Cyclopentyl)
Thiophene-2-Carboxamide
pdb|2PR3|A Chain A, Factor Xa Inhibitor
pdb|2Q1J|A Chain A, The Discovery Of Glycine And Related Amino Acid-Based
Factor Xa Inhibitors
pdb|2P16|A Chain A, Factor Xa In Complex With The Inhibitor Apixaban (Bms-
562247) Aka 1-(4-Methoxyphenyl)-7-Oxo-6-(4-(2-Oxo-1-
Piperidinyl)phenyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3, 4-
C]pyridine-3-Carboxamide
pdb|2RA0|A Chain A, X-Ray Structure Of Fxa In Complex With 7-Fluoroindazole
pdb|2PHB|A Chain A, An Orally Efficacious Factor Xa Inhibitor
pdb|3CEN|A Chain A, Factor Xa In Complex With The Inhibitor
N-(2-(((5-Chloro-2- Pyridinyl)
Amino)sulfonyl)phenyl)-4-(2-Oxo-1(2h)-
Pyridinyl)benzamide
pdb|3CS7|A Chain A, Factor Xa In Complex With The Inhibitor
1-(4-Methoxyphenyl)-
6-(4-(1-(Pyrrolidin-1-Ylmethyl)cyclopropyl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|2W26|A Chain A, Factor Xa In Complex With Bay59-7939
pdb|2W3I|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-disubstituted
Pyrrolidine-1,2-dicarboxamide Inhibitor 2
pdb|2W3K|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-Disubstituted
Pyrrolidine-1,2-Dicarboxamide Inhibitor 1
pdb|3FFG|A Chain A, Factor Xa In Complex With The Inhibitor (R)-6-(2'-((3-
Hydroxypyrrolidin-1-Yl)methyl)biphenyl-4-Yl)-1-(3-(5-
Oxo-4, 5-Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3KQB|A Chain A, Factor Xa In Complex With The Inhibitor N-(3-Fluoro-2'-
(Methylsulfonyl)biphenyl-4-Yl)-1-(3-(5-Oxo-4,
5-Dihydro-1h-
Triazol-3-Yl)phenyl)-3-(Trifluoromethyl)-1h-
Pyrazole-5-Car
pdb|3KQC|A Chain A, Factor Xa In Complex With The Inhibitor 6-(2'-
(Methylsulfon Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1h-
1,2,4-Triazol-3- Phenyl)-3-(Trifluoromethyl)-5,6-
Dihydro-1h-Pyrazolo[3,4-C] 7(4h)-One
pdb|3KQD|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-(5-Oxo-4,5-
Dih 2,4-Triazol-3-Yl)phenyl)-6-(2'-(Pyrrolidin-1-
Ylmethyl)biph Yl)-3-(Trifluoromethyl)-5,6-Dihydro-
1h-Pyrazolo[3,4-C]pyri One
pdb|3KQE|A Chain A, Factor Xa In Complex With The Inhibitor 3-Methyl-1-(3-(5-
Ox Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-6-(2'-
(Pyrrolidin-1- Biphenyl-4-Yl)-5,6-Dihydro-1h-
Pyrazolo[3,4-C]pyridin-7(4h)
pdb|3LIW|A Chain A, Factor Xa In Complex With
(R)-2-(1-Adamantylcarbamoylamino)-
3-(3-Carbamidoyl-Phenyl)-N-Phenethyl-Propionic Acid
Amide
pdb|3M36|A Chain A, Factor Xa In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3M37|A Chain A, Factor Xa In Complex With The Inhibitor 1-[2-(Aminomethyl)
Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
Length = 234
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 129/278 (46%), Gaps = 55/278 (19%)
Query: 117 IVGGLAANPGEFPW-IVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
IVGG GE PW + + FCGGTI+ E +I+TAAHCL A + V +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL------YQAKRFKVRV 54
Query: 176 KEHDLSR----PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLP-- 229
+ + + ++ V V ++ H + +++ DIA+L L I + + PACLP
Sbjct: 55 GDRNTEQEEGGEAVHEVEV--VIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 230 --SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINV 287
+ S ++++ V+G+G T+E +GR+S L+ + + V C+ +
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTHE---KGRQSTRLKMLEVPYVDRNSCKL-----SSSFII 164
Query: 288 KESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGA 347
++ CAG++ +DAC Q DSGGP +
Sbjct: 165 TQNMFCAGYDTKQEDAC------------------------------QGDSGGPHVTRFK 194
Query: 348 ESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
++ V G+VS G GCAR G+YT++T ++ WI ++
Sbjct: 195 DTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R+S L+ + + V C+ + ++ CAG++ +DAC DSGGP +
Sbjct: 138 RQSTRLKMLEVPYVDRNSCKL-----SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTR 192
Query: 61 GAESTQVIGLVSTGIG 76
++ V G+VS G G
Sbjct: 193 FKDTYFVTGIVSWGEG 208
>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free
Form
Length = 250
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 131/287 (45%), Gaps = 58/287 (20%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKK 284
P + SL + V GWG PS +LQ V L +V VC+ + +
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKGQPS------VLQVVNLPIVERPVCK-----DSTR 169
Query: 285 INVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGP 341
I + ++ CAG+ ++G + DAC + DSGGP
Sbjct: 170 IRITDNMFCAGYKPDEGKRGDAC------------------------------EGDSGGP 199
Query: 342 LMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 200 FVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 246
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 149 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 203
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 204 SPFNNRWYQMGIVSWGEG 221
>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small
Molecules Occupying The S1 Pocket
Length = 252
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 133/287 (46%), Gaps = 56/287 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKK 284
P + SL + V GWG N + + ++LQ V L +V VC+ + +
Sbjct: 121 PDRETAASLLQAGYKGRVTGWG----NLKEKGQPSVLQVVNLPIVERPVCK-----DSTR 171
Query: 285 INVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGP 341
I + ++ CAG+ ++G + DAC + DSGGP
Sbjct: 172 IRITDNMFCAGYKPDEGKRGDAC------------------------------EGDSGGP 201
Query: 342 LMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 202 FVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 248
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 151 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 205
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 206 SPFNNRWYQMGIVSWGEG 223
>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SFQ|E Chain E, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SG8|B Chain B, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SG8|E Chain E, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SGI|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SGI|E Chain E, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SHH|B Chain B, Slow Form Of Thrombin Bound With Ppack
pdb|1SHH|E Chain E, Slow Form Of Thrombin Bound With Ppack
pdb|2HWL|B Chain B, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|2HWL|D Chain D, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|3BV9|B Chain B, Structure Of Thrombin Bound To The Inhibitor Fm19
Length = 259
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 135/291 (46%), Gaps = 57/291 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQAD 337
+ +I + ++ CAG+ ++G + DAC + D
Sbjct: 175 DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EGD 204
Query: 338 SGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
SGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|1MQ5|A Chain A, Crystal Structure Of
3-chloro-n-[4-chloro-2-[[(4-chlorophenyl)
Amino]carbonyl]phenyl]-4-[(4-methyl-1-
piperazinyl)methyl]-2- Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1MQ6|A Chain A, Crystal Structure Of
3-Chloro-N-[4-Chloro-2-[[(5-Chloro-2-Pyridinyl)
Amino]carbonyl]-6-Methoxyphenyl]-4-[[(4,
5-Dihydro-2-Oxazolyl)
Methylamino]methyl]-2-Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1V3X|A Chain A, Factor Xa In Complex With The Inhibitor
1-[6-Methyl-4,5,6,7-
Tetrahydrothiazolo(5,4-C)pyridin-2-Yl] Carbonyl-2-
Carbamoyl-4-(6-Chloronaphth-2-Ylsulphonyl)piperazine
pdb|1WU1|A Chain A, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
pdb|2D1J|A Chain A, Factor Xa In Complex With The Inhibitor 2-[[4-[(5-
Chloroindol-2-Yl)sulfonyl]piperazin-1-Yl]
Carbonyl]thieno[3,2-B]pyridine N-Oxide
pdb|2H9E|H Chain H, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
pdb|2P3U|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-N-(4-Chloro-2-{[(5-Chloropyridin-2-Yl)
Amino]carbonyl}-6-Methoxyphenyl)-4-[(1-Methyl-1h-
Imidazol- 2-Yl)methyl]thiophene-2-Carboxamide {pfizer
320663}
pdb|2P3T|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-4-(2-Methylamino-Imidazol-1-Ylmethyl)-Thiophene-
2- Carboxylic Acid [4-Chloro-2-(5-Chloro-Pyridin-2-
Ylcarbamoyl)-6-Methoxy-Phenyl]-Amide
pdb|2EI6|A Chain A, Factor Xa In Complex With The Inhibitor (-)-Cis-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI7|A Chain A, Factor Xa In Complex With The Inhibitor Trans-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI8|A Chain A, Factor Xa In Complex With The Inhibitor (1s,2r,4s)-N1-[(5-
Chloroindol-2-Yl)carbonyl]-4-(N,N-Dimethylcarbamoyl)-N2-
[(5-Methyl-4,5,6,7-Tetrahydrothiazolo[5,
4-C]pyridin-2-Yl) Carbonyl]-1,2-Cyclohexanediamine
pdb|3IIT|A Chain A, Factor Xa In Complex With A Cis-1,2-Diaminocyclohexane
Derivative
pdb|3Q3K|A Chain A, Factor Xa In Complex With A Phenylenediamine Derivative
pdb|3TK5|A Chain A, Factor Xa In Complex With D102-4380
pdb|3TK6|A Chain A, Factor Xa In Complex With D46-5241
Length = 233
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 129/278 (46%), Gaps = 55/278 (19%)
Query: 117 IVGGLAANPGEFPW-IVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
IVGG GE PW + + FCGGTI+ E +I+TAAHCL A + V +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL------YQAKRFKVRV 54
Query: 176 KEHDLSR----PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLP-- 229
+ + + ++ V V ++ H + +++ DIA+L L I + + PACLP
Sbjct: 55 GDRNTEQEEGGEAVHEVEV--VIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 230 --SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINV 287
+ S ++++ V+G+G T+E +GR+S L+ + + V C+ +
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTHE---KGRQSTRLKMLEVPYVDRNSCKL-----SSSFII 164
Query: 288 KESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGA 347
++ CAG++ +DAC Q DSGGP +
Sbjct: 165 TQNMFCAGYDTKQEDAC------------------------------QGDSGGPHVTRFK 194
Query: 348 ESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
++ V G+VS G GCAR G+YT++T ++ WI ++
Sbjct: 195 DTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R+S L+ + + V C+ + ++ CAG++ +DAC DSGGP +
Sbjct: 138 RQSTRLKMLEVPYVDRNSCKL-----SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTR 192
Query: 61 GAESTQVIGLVSTGIG 76
++ V G+VS G G
Sbjct: 193 FKDTYFVTGIVSWGEG 208
>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride
pdb|2A0Q|D Chain D, Structure Of Thrombin In 400 Mm Potassium Chloride
Length = 257
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 135/291 (46%), Gaps = 57/291 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQAD 337
+ +I + ++ CAG+ ++G + DAC + D
Sbjct: 175 DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EGD 204
Query: 338 SGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
SGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
pdb|1RD3|D Chain D, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
Length = 259
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 135/291 (46%), Gaps = 57/291 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQAD 337
+ +I + ++ CAG+ ++G + DAC + D
Sbjct: 175 DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EGD 204
Query: 338 SGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
SGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSWGKGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGKG 230
>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor
pdb|1LO6|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor At 1.56 A Resolution
Length = 223
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 119/272 (43%), Gaps = 55/272 (20%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
+V G + P+ +L G CGG +IH W++TAAHC + V L
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHC--------KKPNLQVFLG 52
Query: 177 EHDLSR--PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
+H+L + S V+R + HP + +S + DI LL L R + S+LI+P L
Sbjct: 53 KHNLRQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLER-DCS 111
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
+ S + GWG T + G + +Q + +VS + C+ Y + + ++ +CA
Sbjct: 112 ANTTSCHILGWGKT----ADGDFPDTIQCAYIHLVSREECEHAYPGQ-----ITQNMLCA 162
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
G E+ GKD+C Q DSGGPL+ + G
Sbjct: 163 GDEKYGKDSC------------------------------QGDSGGPLVC----GDHLRG 188
Query: 355 LVSTG-IGCARPRLPGLYTRLTRYIGWISDTL 385
LVS G I C PG+YT + RY WI T+
Sbjct: 189 LVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTI 220
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
+ +Q + +VS + C+ Y + + ++ +CAG E+ GKD+C DSGGPL+
Sbjct: 132 DTIQCAYIHLVSREECEHAYPGQ-----ITQNMLCAGDEKYGKDSCQGDSGGPLVC---- 182
Query: 64 STQVIGLVSTG 74
+ GLVS G
Sbjct: 183 GDHLRGLVSWG 193
>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent,
Benzamidine-Based Synthetic Inhibitor
pdb|1D3D|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzothiophene Inhibitor 4
pdb|1EB1|H Chain H, Complex Structure Of Human Thrombin With N-Methyl-Arginine
Inhibitor
pdb|1GHV|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1YPE|H Chain H, Thrombin Inhibitor Complex
pdb|1YPG|H Chain H, Thrombin Inhibitor Complex
pdb|1YPJ|H Chain H, Thrombin Inhibitor Complex
pdb|1YPK|H Chain H, Thrombin Inhibitor Complex
pdb|1YPL|H Chain H, X-Ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1008
pdb|1YPM|H Chain H, X-ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1014
pdb|2ANM|H Chain H, Ternary Complex Of An Orally Active Thrombin Inhibitor
With Human Thrombin And A C-Terminal Hirudin Derived
Exo-Sit Inhibitor
pdb|2CF9|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|1GHX|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GHY|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2CF8|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|2CN0|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Inhibitor
pdb|3BIU|H Chain H, Human Thrombin-In Complex With Ub-Thr10
pdb|3BIV|H Chain H, Human Thrombin-In Complex With Ub-Thr11
pdb|2V3H|H Chain H, Thrombin With 3-Cycle No F
pdb|2V3O|H Chain H, Thrombin With 3-Cycle With F
pdb|4AX9|H Chain H, Human Thrombin Complexed With Napsagatran, Ro0466240
pdb|4AYV|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AYY|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AZ2|B Chain B, Human Thrombin - Inhibitor Complex
pdb|1GHW|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-centered Short Hydrogen Bonding Network At The
Active Site
Length = 257
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 135/291 (46%), Gaps = 57/291 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQAD 337
+ +I + ++ CAG+ ++G + DAC + D
Sbjct: 175 DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EGD 204
Query: 338 SGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
SGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A
Tripeptide Phosphonate Inhibitor
Length = 253
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 132/287 (45%), Gaps = 55/287 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKK 284
P + SL + V GWG E Q ++LQ V L +V VC+ + +
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWGQ---PSVLQVVNLPIVERPVCK-----DSTR 172
Query: 285 INVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGP 341
I + ++ CAG+ ++G + DAC + DSGGP
Sbjct: 173 IRITDNMFCAGYKPDEGKRGDAC------------------------------EGDSGGP 202
Query: 342 LMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 203 FVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 249
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 152 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 206
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 207 SPFNNRWYQMGIVSWGEG 224
>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex
Length = 254
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 129/278 (46%), Gaps = 55/278 (19%)
Query: 117 IVGGLAANPGEFPW-IVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
IVGG GE PW + + FCGGTI+ E +I+TAAHCL A + V +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL------YQAKRFKVRV 54
Query: 176 KEHDLSR----PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLP-- 229
+ + + ++ V V ++ H + +++ DIA+L L I + + PACLP
Sbjct: 55 GDRNTAAEEGGEAVHEVEV--VIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 230 --SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINV 287
+ S ++++ V+G+G T+E +GR+S L+ + + V C+ +
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTHE---KGRQSTRLKMLEVPYVDRNSCKL-----SSSFII 164
Query: 288 KESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGA 347
++ CAG++ +DAC Q DSGGP +
Sbjct: 165 TQNMFCAGYDTKQEDAC------------------------------QGDSGGPHVTRFK 194
Query: 348 ESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
++ V G+VS G GCAR G+YT++T ++ WI ++
Sbjct: 195 DTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R+S L+ + + V C+ + ++ CAG++ +DAC DSGGP +
Sbjct: 138 RQSTRLKMLEVPYVDRNSCKL-----SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTR 192
Query: 61 GAESTQVIGLVSTGIG 76
++ V G+VS G G
Sbjct: 193 FKDTYFVTGIVSWGEG 208
>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190ALA190 PROTEASE, Structure-Based Drug Design
pdb|1SB1|H Chain H, Novel Non-Covalent Thrombin Inhibitors Incorporating P1
4,5,6,7- Tetrahydrobenzothiazole Arginine Side Chain
Mimetics
pdb|2PW8|H Chain H, Crystal Structure Of Sulfo-Hirudin Complexed To Thrombin
pdb|3DD2|H Chain H, Crystal Structure Of An Rna Aptamer Bound To Human
Thrombin
pdb|1GJ4|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190/ala190 Protease, Structure-based Drug Design
Length = 258
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 135/291 (46%), Gaps = 57/291 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQAD 337
+ +I + ++ CAG+ ++G + DAC + D
Sbjct: 175 DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EGD 204
Query: 338 SGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
SGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1ABJ|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1DWB|H Chain H, Crystallographic Analysis At 3.0-angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-directed Inhibitors
pdb|1DWC|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWD|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWE|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1FPH|H Chain H, The Interaction Of Thrombin With Fibrinogen: A Structural
Basis For Its Specificity
pdb|1HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of Alpha-
Thrombin
pdb|1IHS|H Chain H, Crystal Structure Of The Complex Of Human Alpha-thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1IHT|H Chain H, Crystal Structure Of The Complex Of Human Alpha-Thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1PPB|H Chain H, The Refined 1.9 Angstroms Crystal Structure Of Human
Alpha-Thrombin: Interaction With D-Phe-Pro-Arg
Chloromethylketone And Significance Of The
Tyr-Pro-Pro-Trp Insertion Segment
pdb|1THR|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1THS|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1TMB|H Chain H, Molecular Basis For The Inhibition Of Human Alpha-thrombin
By The Macrocyclic Peptide Cyclotheonamide A
pdb|2HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of
Alpha-Thrombin
pdb|2HPP|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-Thrombin
pdb|2HPQ|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-thrombin
pdb|3HTC|H Chain H, The Structure Of A Complex Of Recombinant Hirudin And
Human Alpha-Thrombin
pdb|4HTC|H Chain H, The Refined Structure Of The Hirudin-Thrombin Complex
pdb|1HUT|H Chain H, The Structure Of Alpha-Thrombin Inhibited By A 15-Mer
Single-Stranded Dna Aptamer
pdb|1NRN|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRO|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRP|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRQ|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRR|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRS|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1TMT|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1TMU|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1HLT|H Chain H, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HLT|K Chain K, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HAH|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1HAI|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|3HAT|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1FPC|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1HBT|H Chain H, Human Alpha-Thrombin Complexed With A Peptidyl Pyridinium
Methyl Ketone Containing Bivalent Inhibitor
pdb|1HDT|H Chain H, Structure Of A Retro-Binding Peptide Inhibitor Complexed
With Human Alpha-Thrombin
pdb|1HAO|H Chain H, Complex Of Human Alpha-thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (based On Nmr Model Of
Dna)
pdb|1HAP|H Chain H, Complex Of Human Alpha-Thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (Based On X-Ray Model Of
Dna)
pdb|1AHT|H Chain H, Crystal Structure Of Human Alpha-Thrombin Complexed With
Hirugen And P-Amidinophenylpyruvate At 1.6 Angstroms
Resolution
pdb|1DIT|H Chain H, Complex Of A Divalent Inhibitor With Thrombin
pdb|1TOM|H Chain H, Alpha-Thrombin Complexed With Hirugen
pdb|1HXF|H Chain H, Human Thrombin Complex With Hirudin Variant
pdb|1BMM|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-4-[(Aminoiminomethyl)
Amino]-N-[[1-[3-Hydroxy-2-[(2-
Naphthalenylsulfonyl)amino]-1-
Oxopropyl]-2-Pyrrolidinyl] Methyl]butanamide
(Bms-186282)
pdb|1BMN|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-1-(Aminoiminomethyl)-
N-[[1-[n-[(2-Naphthalenylsulfonyl)-L-Seryl]-
Pyrrolidinyl]methyl]-3- Piperidenecarboxamide
(Bms-189090)
pdb|1UMA|H Chain H, Alpha-Thrombin (Hirugen) Complexed With
Na-(N,N-Dimethylcarbamoyl)- Alpha-Azalysine
pdb|1LHD|H Chain H, Human Alpha-thrombin Complexed With
Ac-(d)phe-pro-borolys-oh
pdb|1LHE|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-N-
Butyl-Amidino-Glycine-Oh
pdb|1LHF|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-
Homolys-Oh
pdb|1LHG|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-
Boroornithine-Oh
pdb|1LHC|H Chain H, Human Alpha-Thrombin Complexed With
Ac-(D)phe-Pro-Boroarg-Oh
pdb|1AD8|H Chain H, Complex Of Thrombin With And Inhibitor Containing A Novel
P1 Moiety
pdb|1AI8|H Chain H, Human Alpha-Thrombin Ternary Complex With The Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Borompg
pdb|1AIX|H Chain H, Human Alpha-Thrombin Ternary Complex With Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Boroval
pdb|1AE8|H Chain H, Human Alpha-Thrombin Inhibition By
Eoc-D-Phe-Pro-Azalys-Onp
pdb|1AFE|H Chain H, Human Alpha-Thrombin Inhibition By Cbz-Pro-Azalys-Onp
pdb|1UVS|H Chain H, Bovine Thrombin--Bm51.1011 Complex
pdb|5GDS|H Chain H, Hirunorms Are True Hirudin Mimetics. The Crystal Structure
Of Human Alpha-Thrombin:hirunorm V Complex
pdb|1AY6|H Chain H, Thrombin Inhibitor From Theonalla, Cyclotheanamide-Based
Macrocyclic Tripeptide Motif
pdb|1A46|H Chain H, Thrombin Complexed With Hirugen And A Beta-Strand Mimetic
Inhibitor
pdb|1A4W|H Chain H, Crystal Structures Of Thrombin With Thiazole-Containing
Inhibitors: Probes Of The S1' Binding Site
pdb|1A5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1B5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1TBZ|H Chain H, Human Thrombin With Active Site N-Methyl-D
Phenylalanyl-N-[5-
(Aminoiminomethyl)amino]-1-{{benzothiazolyl)carbonyl]
Butyl]-L- Prolinamide Trifluroacetate And
Exosite-Hirugen
pdb|1A2C|H Chain H, Structure Of Thrombin Inhibited By Aeruginosin298-A From A
Blue-Green Alga
pdb|1A61|H Chain H, Thrombin Complexed With A Beta-Mimetic Thiazole-Containing
Inhibitor
pdb|1A3B|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog1
pdb|1A3E|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog2
pdb|1AWF|H Chain H, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|B Chain B, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|D Chain D, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1BCU|H Chain H, Alpha-Thrombin Complexed With Hirugen And Proflavin
pdb|8KME|2 Chain 2, Crystal Structure Of Human Alpha-thrombin Inhibited With
Sel2770.
pdb|1BA8|B Chain B, Thrombin Inhibitor With A Rigid Tripeptidyl Aldehydes
pdb|1BB0|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1CA8|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|4THN|H Chain H, The Crystal Structure Of Alpha-Thrombin-Hirunorm Iv
Complex Reveals A Novel Specificity Site Recognition
Mode.
pdb|1QBV|H Chain H, Crystal Structure Of Thrombin Complexed With An
Guanidine-Mimetic Inhibitor
pdb|1D4P|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
5- Amidinoindole-4-benzylpiperidine Inhibitor
pdb|7KME|H Chain H, Crystal Structure Of Human Alpha-Thrombin Inhibited With
Sel2711.
pdb|1QHR|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ1|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ6|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ7|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1D3P|B Chain B, Crystal Structure Of Human Aplha-Thrombin In Complex With
Benzo[b]thiophene Inhibitor 3
pdb|1D3Q|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 2
pdb|1D3T|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 1
pdb|1C4U|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4V|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4Y|2 Chain 2, Selective Non-Electrophilic Thrombin Inhibitors
pdb|1DE7|H Chain H, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1DE7|K Chain K, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1G30|B Chain B, Thrombin Inhibitor Complex
pdb|1G32|B Chain B, Thrombin Inhibitor Complex
pdb|1KTS|B Chain B, Thrombin Inhibitor Complex
pdb|1KTT|B Chain B, Thrombin Inhibitor Complex
pdb|1K21|H Chain H, Human Thrombin-Inhibitor Complex
pdb|1K22|H Chain H, Human Thrombin-inhibitor Complex
pdb|1NY2|2 Chain 2, Human Alpha Thrombin Inhibited By Rppgf And Hirugen
pdb|1O2G|H Chain H, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1OYT|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Fluorinated Inhibitor
pdb|1NO9|H Chain H, Design Of Weakly Basic Thrombin Inhibitors Incorporating
Novel P1 Binding Functions: Molecular And X-Ray
Crystallographic Studies.
pdb|1OOK|B Chain B, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
pdb|1P8V|C Chain C, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
pdb|1NU7|B Chain B, Staphylocoagulase-Thrombin Complex
pdb|1NU7|F Chain F, Staphylocoagulase-Thrombin Complex
pdb|1NZQ|H Chain H, D-Phe-Pro-Arg-Type Thrombin Inhibitor
pdb|1O0D|H Chain H, Human Thrombin Complexed With A D-Phe-Pro-Arg-Type
Inhibitor And A C- Terminal Hirudin Derived Exo-Site
Inhibitor
pdb|1MU6|B Chain B, Crystal Structure Of Thrombin In Complex With L-378,622
pdb|1MU8|B Chain B, Thrombin-Hirugen_l-378,650
pdb|1MUE|B Chain B, Thrombin-Hirugen-L405,426
pdb|1SR5|C Chain C, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1O5G|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1XMN|B Chain B, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|D Chain D, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|F Chain F, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|H Chain H, Crystal Structure Of Thrombin Bound To Heparin
pdb|1WAY|B Chain B, Active Site Thrombin Inhibitors
pdb|1T4U|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|1T4V|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|2AFQ|B Chain B, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2AFQ|D Chain D, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2A45|B Chain B, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|2A45|E Chain E, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|1W7G|H Chain H, Alpha-Thrombin Complex With Sulfated Hirudin (Residues
54-65) And L- Arginine Template Inhibitor Cs107
pdb|2FES|H Chain H, Orally Active Thrombin Inhibitors
pdb|2C8W|B Chain B, Thrombin Inhibitors
pdb|2C8X|B Chain B, Thrombin Inhibitors
pdb|2C8Y|B Chain B, Thrombin Inhibitors
pdb|2C8Z|B Chain B, Thrombin Inhibitors
pdb|2C90|B Chain B, Thrombin Inhibitors
pdb|2C93|B Chain B, Thrombin Inhibitors
pdb|2FEQ|H Chain H, Orally Active Thrombin Inhibitors
pdb|2BVS|H Chain H, Human Thrombin Complexed With Fragment-Based Small
Molecules Occupying The S1 Pocket
pdb|2BVX|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-P2-Linker
pdb|2BXT|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2BXU|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2A2X|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
Inh12
pdb|2ANK|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
And An Exosite Decapeptide
pdb|2GDE|H Chain H, Thrombin In Complex With Inhibitor
pdb|2H9T|H Chain H, Crystal Structure Of Human Alpha-Thrombin In Complex With
Suramin
pdb|2JH0|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH5|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH6|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|1C1U|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1V|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1W|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5L|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5N|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5O|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1HXE|H Chain H, Serine Protease
pdb|2UUF|B Chain B, Thrombin-Hirugen Binary Complex At 1.26a Resolution
pdb|2UUJ|B Chain B, Thrombin-Hirugen-Gw473178 Ternary Complex At 1.32a
Resolution
pdb|2UUK|B Chain B, Thrombin-Hirugen-Gw420128 Ternary Complex At 1.39a
Resolution
pdb|3BF6|H Chain H, Thrombin:suramin Complex
pdb|2R2M|B Chain B, 2-(2-chloro-6-fluorophenyl)acetamides As Potent Thrombin
Inhibitors
pdb|3EGK|H Chain H, Knoble Inhibitor
pdb|2ZC9|H Chain H, Thrombin In Complex With Inhibitor
pdb|2ZDA|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZDV|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZF0|H Chain H, Exploring Thrombin S1 Pocket
pdb|3E6P|H Chain H, Crystal Structure Of Human Meizothrombin Desf1
pdb|2ZFF|H Chain H, Exploring Thrombin S1-Pocket
pdb|2ZFP|H Chain H, Thrombin Inibition
pdb|2ZGB|H Chain H, Thrombin Inhibition
pdb|2ZGX|H Chain H, Thrombin Inhibition
pdb|2ZFQ|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZFR|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHQ|H Chain H, Thrombin Inhibition
pdb|2ZI2|H Chain H, Thrombin Inhibition
pdb|2ZIQ|H Chain H, Thrombin Inhibition
pdb|2ZG0|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHE|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHF|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHW|H Chain H, Exploring Thrombin S3 Pocket
pdb|3C27|B Chain B, Cyanofluorophenylacetamides As Orally Efficacious Thrombin
Inhibitors
pdb|2ZNK|H Chain H, Thrombin Inhibition
pdb|2ZO3|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3D49|H Chain H, Thrombin Inhibition
pdb|3DA9|B Chain B, Crystal Structure Of Thrombin In Complex With Inhibitor
pdb|3DHK|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3DT0|H Chain H, Understanding Thrombin Inhibition
pdb|3DUX|H Chain H, Understanding Thrombin Inhibition
pdb|3EQ0|H Chain H, Thrombin Inhibitor
pdb|3F68|H Chain H, Thrombin Inhibition
pdb|3PMH|B Chain B, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
pdb|3P6Z|B Chain B, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P6Z|H Chain H, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3LDX|H Chain H, Discovery And Clinical Evaluation Of Rwj-671818, A
Thrombin Inhibitor With An Oxyguanidine P1 Motif
pdb|3P70|B Chain B, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|D Chain D, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|F Chain F, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|H Chain H, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3TU7|H Chain H, Human Alpha-Thrombin Complexed With
N-(Methylsulfonyl)-D-Phenylalanyl-
N-((1-Carbamimidoyl-4-Piperidinyl)methyl)-L-Prolinamide
(Bms-189664)
pdb|3QLP|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And A Modified Thrombin Binding Aptamer (Mtba)
pdb|3P17|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3B23|B Chain B, Crystal Structure Of Thrombin-Variegin Complex: Insights
Of A Novel Mechanism Of Inhibition And Design Of Tunable
Thrombin Inhibitors
pdb|3QTO|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QTV|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QX5|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QWC|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3U69|H Chain H, Unliganded Wild-Type Human Thrombin
pdb|3U8T|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Cys
pdb|3RLW|H Chain H, Human Thrombin In Complex With Mi328
pdb|3RLY|H Chain H, Human Thrombin In Complex With Mi329
pdb|3RM0|H Chain H, Human Thrombin In Complex With Mi354
pdb|3RM2|H Chain H, Human Thrombin In Complex With Mi003
pdb|3RML|H Chain H, Human Thrombin In Complex With Mi331
pdb|3RMM|H Chain H, Human Thrombin In Complex With Mi332
pdb|3RMN|H Chain H, Human Thrombin In Complex With Mi341
pdb|3RMO|H Chain H, Human Thrombin In Complex With Mi004
pdb|3U8O|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-D-Thr
pdb|3U8R|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Ile
pdb|3SHA|H Chain H, Human Thrombin In Complex With Ubthr97
pdb|3SHC|H Chain H, Human Thrombin In Complex With Ubthr101
pdb|3SI3|H Chain H, Human Thrombin In Complex With Ubthr103
pdb|3SI4|H Chain H, Human Thrombin In Complex With Ubthr104
pdb|3SV2|H Chain H, Human Thrombin In Complex With Ubthr105
pdb|4E7R|H Chain H, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4E7R|G Chain G, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4DIH|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Sodium Ions
pdb|4DII|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Potassium Ions
pdb|3T5F|H Chain H, Human Thrombin In Complex With Mi340
pdb|3UTU|H Chain H, High Affinity Inhibitor Of Human Thrombin
pdb|3U98|H Chain H, Human Thrombin In Complex With Mi001
pdb|3U9A|H Chain H, Human Thrombin In Complex With Mi330
pdb|4E05|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|4E06|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|3UWJ|H Chain H, Human Thrombin In Complex With Mi353
pdb|4BAH|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAK|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAM|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAN|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAO|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAQ|B Chain B, Thrombin In Complex With Inhibitor
Length = 259
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 135/291 (46%), Gaps = 57/291 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQAD 337
+ +I + ++ CAG+ ++G + DAC + D
Sbjct: 175 DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EGD 204
Query: 338 SGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
SGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A
Tripeptide Phosphonate Inhibitor
Length = 260
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 133/287 (46%), Gaps = 56/287 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKK 284
P + SL + V GWG N + + ++LQ V L +V VC+ + +
Sbjct: 121 PDRETAASLLQAGYKGRVTGWG----NLKETGQPSVLQVVNLPIVERPVCK-----DSTR 171
Query: 285 INVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGP 341
I + ++ CAG+ ++G + DAC + DSGGP
Sbjct: 172 IRITDNMFCAGYKPDEGKRGDAC------------------------------EGDSGGP 201
Query: 342 LMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 202 FVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 248
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 151 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 205
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 206 SPFNNRWYQMGIVSWGEG 223
>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+
Form
pdb|3JZ2|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E Form
pdb|3QGN|B Chain B, The Allosteric E-E Equilibrium Is A Key Property Of The
Trypsin Fold
Length = 259
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 136/292 (46%), Gaps = 59/292 (20%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWG-----WTNENPSQGRRSNILQKVALSVVSNQVCQAWYQ 279
P + SL + V GWG WT N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGPLKETWT-ANVGKGQPS-VLQVVNLPIVERPVCK---- 174
Query: 280 SEGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQA 336
+ +I + ++ CAG+ ++G + DAC +
Sbjct: 175 -DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EG 203
Query: 337 DSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
DSGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 204 DSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To
D-phe-pro-arg- Chloromethylketone
Length = 259
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 135/291 (46%), Gaps = 57/291 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQAD 337
+ +I + ++ CAG+ ++G + DAC + D
Sbjct: 175 DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EGD 204
Query: 338 SGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
SGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKFGFYTHVFRLKKWIQKVID 255
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With
Fibrinopeptide A (7- 16)
pdb|1JMO|H Chain H, Crystal Structure Of The Heparin Cofactor Ii-S195a
Thrombin Complex
Length = 260
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 136/292 (46%), Gaps = 57/292 (19%)
Query: 116 KIVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQI 171
+IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 60
Query: 172 NVTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPAC 227
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P C
Sbjct: 61 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 120
Query: 228 LP----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQ 279
LP + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 LPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK---- 175
Query: 280 SEGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQA 336
+ +I + ++ CAG+ ++G + DAC +
Sbjct: 176 -DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EG 204
Query: 337 DSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
D+GGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 205 DAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 256
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC D+GGP ++
Sbjct: 159 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMK 213
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 214 SPFNNRWYQMGIVSWGEG 231
>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva
Plasminogen Activator In Complex With Egr-Cmk
(Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 127/285 (44%), Gaps = 49/285 (17%)
Query: 118 VGGLAANPGEFPWIVSL----KRHGGH--FCGGTIIHEQWIVTAAHCLCNGPSPLSASQI 171
GGL + PW ++ +R G CGG +I W++TAAHC P Q+
Sbjct: 15 TGGLFTDITSHPWQAAIFAQNRRSSGERFLCGGILISSCWVLTAAHCFQESYLP---DQL 71
Query: 172 NVTLKEHDLSRP--SISTVPVLRIMFHPSHSCSSFNNDIALLELT----RSIQWSDLIRP 225
V L +P T V + + H ++NNDIALL+L + Q SD +R
Sbjct: 72 KVVLGRTYRVKPGEEEQTFKVKKYIVHKEFDDDTYNNDIALLQLKSDSPQCAQESDSVRA 131
Query: 226 ACLPSGSL---DYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEG 282
CLP +L D++E ++ G+ S S L++ + + + C +
Sbjct: 132 ICLPEANLQLPDWTECELS----GYGKHKSSSPFYSEQLKEGHVRLYPSSRCAPKFLFNK 187
Query: 283 KKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPL 342
V + +CAG + G+ +YP+ VH Q DSGGPL
Sbjct: 188 ---TVTNNMLCAGDTRSGE------------------IYPN----VH--DACQGDSGGPL 220
Query: 343 MLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLDI 387
+ + ++G++S G+GC +PG+YT++T Y+GWI D + +
Sbjct: 221 VCMNDNHMTLLGIISWGVGCGEKDVPGVYTKVTNYLGWIRDNMHL 265
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 32 VKESQMCAGHEQGGK------DACWADSGGPLMLLGAESTQVIGLVSTGIG 76
V + +CAG + G+ DAC DSGGPL+ + ++G++S G+G
Sbjct: 189 VTNNMLCAGDTRSGEIYPNVHDACQGDSGGPLVCMNDNHMTLLGIISWGVG 239
>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
pdb|1FI8|B Chain B, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
Length = 228
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 127/276 (46%), Gaps = 58/276 (21%)
Query: 117 IVGGLAANPGEFPWIVSLK----RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQIN 172
I+GG A P P++ L+ G CGG +I E +++TAAHC S S+I
Sbjct: 1 IIGGHEAKPHSRPYMAYLQIMDEYSGSKKCGGFLIREDFVLTAAHC--------SGSKIQ 52
Query: 173 VTLKEHDLSRPSI--STVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS 230
VTL H++ +PV++I+ HP+++ + +NDI LL+L + S ++P LP
Sbjct: 53 VTLGAHNIKEQEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPR 112
Query: 231 GSLDYSEQSV-TVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKE 289
++ V VAGWG G+ S+ LQ+V L+V +Q C+++ ++ K N
Sbjct: 113 RNVKVKPGDVCYVAGWGKLG---PMGKYSDTLQEVELTVQEDQKCESYLKNYFDKAN--- 166
Query: 290 SQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAES 349
++CAG P + R + DSGGPL+ +
Sbjct: 167 -EICAG----------------DPKIKRAS--------------FRGDSGGPLVCKKVAA 195
Query: 350 TQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+VS G P +T+++ ++ WI T+
Sbjct: 196 ----GIVSYGQNDG--STPRAFTKVSTFLSWIKKTM 225
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLM 58
+ S+ LQ+V L+V +Q C+++ ++ K N ++CAG + + + DSGGPL+
Sbjct: 136 KYSDTLQEVELTVQEDQKCESYLKNYFDKAN----EICAGDPKIKRASFRGDSGGPLV 189
>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To
Ppack
Length = 259
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 135/291 (46%), Gaps = 57/291 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQAD 337
+ +I + ++ CAG+ ++G + DAC + D
Sbjct: 175 DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EPD 204
Query: 338 SGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
SGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEPDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D-
Phe-Pro-Arg-Chloromethylketone
Length = 259
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 135/291 (46%), Gaps = 57/291 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQAD 337
+ +I + ++ CAG+ ++G + DAC + D
Sbjct: 175 DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EGD 204
Query: 338 SGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
SGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKIGFYTHVFRLKKWIQKVID 255
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A
Para-Amidobenzylanmine P1 Group Carry A High Binding
Efficiency
pdb|3VFE|A Chain A, Virtual Screening And X-Ray Crystallography For Human
Kallikrein 6 Inhibitors With An Amidinothiophene P1
Group
Length = 223
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 121/274 (44%), Gaps = 59/274 (21%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
+V G + P+ +L G CGG +IH W++TAAHC + V L
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHC--------KKPNLQVFLG 52
Query: 177 EHDL--SRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
+H+L S V+R + HP + +S + DI LL L R + S+LI+P L D
Sbjct: 53 KHNLGQQESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPL---ERD 109
Query: 235 YSEQSVT--VAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
S Q+ + + GWG T + G + +Q + +VS + C+ Y + + ++ +
Sbjct: 110 CSAQTTSCHILGWGKT----ADGDFPDTIQCAYIHLVSREECEHAYPGQ-----ITQNML 160
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG E+ GKD+C Q DSGGPL+ +
Sbjct: 161 CAGDEKYGKDSC------------------------------QGDSGGPLVC----GDHL 186
Query: 353 IGLVSTG-IGCARPRLPGLYTRLTRYIGWISDTL 385
GLVS G I C PG+YT + RY WI T+
Sbjct: 187 RGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTI 220
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
+ +Q + +VS + C+ Y + + ++ +CAG E+ GKD+C DSGGPL+
Sbjct: 132 DTIQCAYIHLVSREECEHAYPGQ-----ITQNMLCAGDEKYGKDSCQGDSGGPLVC---- 182
Query: 64 STQVIGLVSTG 74
+ GLVS G
Sbjct: 183 GDHLRGLVSWG 193
>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|B Chain B, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 241
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 129/278 (46%), Gaps = 55/278 (19%)
Query: 117 IVGGLAANPGEFPW-IVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
IVGG GE PW + + FCGGTI+ E +I+TAAHCL A + V +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL------YQAKRFKVRV 54
Query: 176 KEHDLSR----PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLP-- 229
+ + + ++ V V ++ H + +++ DIA+L L I + + PACLP
Sbjct: 55 GDRNTEQEEGGEAVHEVEV--VIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 230 --SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINV 287
+ S ++++ V+G+G T+E +GR+S L+ + + V C+ +
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTHE---KGRQSTRLKMLEVPYVDRNSCKL-----SSSFII 164
Query: 288 KESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGA 347
++ CAG++ +DAC Q D+GGP +
Sbjct: 165 TQNMFCAGYDTKQEDAC------------------------------QGDAGGPHVTRFK 194
Query: 348 ESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
++ V G+VS G GCAR G+YT++T ++ WI ++
Sbjct: 195 DTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R+S L+ + + V C+ + ++ CAG++ +DAC D+GGP +
Sbjct: 138 RQSTRLKMLEVPYVDRNSCKL-----SSSFIITQNMFCAGYDTKQEDACQGDAGGPHVTR 192
Query: 61 GAESTQVIGLVSTGIG 76
++ V G+VS G G
Sbjct: 193 FKDTYFVTGIVSWGEG 208
>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With
The Elastase Inhibitor Gr143783
Length = 241
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 128/283 (45%), Gaps = 59/283 (20%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSPLSASQIN 172
+VGG A P +PW VSL+ H CGGT++ + W++TAAHC+ S+
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCIS------SSRTYR 54
Query: 173 VTLKEHDLS--RPSISTVPVLRIMFHPSHSCSSFN--NDIALLELTRSIQWSDLIRPACL 228
V L H LS P V V +++ H + + + NDIALL+L + +D I+ CL
Sbjct: 55 VVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCL 114
Query: 229 P-SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQ--AWYQSEGKKI 285
P +G++ + V GWG N G +ILQ+ L VV C W+ S
Sbjct: 115 PAAGTILPNNYVCYVTGWGRLQTN---GASPDILQQGQLLVVDYATCSKPGWWGST---- 167
Query: 286 NVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLL 345
VK + +CAG + G +C DSGGPL
Sbjct: 168 -VKTNMICAGGD-GIISSC------------------------------NGDSGGPLNCQ 195
Query: 346 GAEST-QVIGLVSTG--IGCARPRLPGLYTRLTRYIGWISDTL 385
GA QV G+VS G +GC P ++TR++ YI WI+ +
Sbjct: 196 GANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVI 238
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 4 NILQKVALSVVSNQVCQ--AWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLG 61
+ILQ+ L VV C W+ S VK + +CAG + G +C DSGGPL G
Sbjct: 143 DILQQGQLLVVDYATCSKPGWWGST-----VKTNMICAGGD-GIISSCNGDSGGPLNCQG 196
Query: 62 AEST-QVIGLVSTG 74
A QV G+VS G
Sbjct: 197 ANGQWQVHGIVSFG 210
>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|Z Chain Z, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 237
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 124/283 (43%), Gaps = 64/283 (22%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG PW V++ R+ + CGG ++ W++TAAHC V L
Sbjct: 1 IVGGFKCEKNSQPWHVAVYRYTQYLCGGVLLDPNWVLTAAHCY--------DDNYKVWLG 52
Query: 177 EHDLSR--PSISTVPVLRIMFHPSHSCS-----------SFNNDIALLELTRSIQWSDLI 223
+++L + PS V + + HP + S ++ND+ LL L++ +D +
Sbjct: 53 KNNLFKDEPSAQHRFVSKAIPHPGFNMSLMRKHIRFLEYDYSNDLMLLRLSKPADITDTV 112
Query: 224 RPACLPSGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGK 283
+P LP+ + + T GW + P++ + ++ L V L ++ N+ C + +
Sbjct: 113 KPITLPT---EEPKLGSTCLASGWGSITPTKFQFTDDLYCVNLKLLPNEDCAKAHIEK-- 167
Query: 284 KINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLM 343
V ++ +CAG GGKD C + DSGGPL+
Sbjct: 168 ---VTDAMLCAGEMDGGKDTC------------------------------KGDSGGPLI 194
Query: 344 LLGAESTQVIGLVSTG-IGCARPRLPGLYTRLTRYIGWISDTL 385
G + G+ S G C P +PG+YT+L ++ WI DT+
Sbjct: 195 CDGV----LQGITSWGHTPCGEPDMPGVYTKLNKFTSWIKDTM 233
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
++ L V L ++ N+ C + + V ++ +CAG GGKD C DSGGPL+ G
Sbjct: 144 TDDLYCVNLKLLPNEDCAKAHIEK-----VTDAMLCAGEMDGGKDTCKGDSGGPLICDGV 198
>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 242
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 131/278 (47%), Gaps = 48/278 (17%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV-TL 175
I GG A PG+FPW V + GG G ++++ W++TAAH + SA I + TL
Sbjct: 1 IYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTL 58
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSS-FNNDIALLELTRSIQWSDLIRPACLP---SG 231
K LS P + + H ++ + F+NDIAL++L + + I P CLP +
Sbjct: 59 KR--LS-PHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAE 115
Query: 232 SLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGK-KINVKES 290
S ++ T +GWG T +G + L V + +V +Q C A Y+ + +V +
Sbjct: 116 SFMRTDDIGTASGWGLTQ----RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTAN 171
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
+CAG E GGKD+C + DSGG L+ L +E+
Sbjct: 172 MLCAGLESGGKDSC------------------------------RGDSGGALVFLDSETE 201
Query: 351 Q--VIGLVSTG-IGCARPRLPGLYTRLTRYIGWISDTL 385
+ V G+VS G + C G+YT++ YI WI + +
Sbjct: 202 RWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 239
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGK-KINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES 64
L V + +V +Q C A Y+ + +V + +CAG E GGKD+C DSGG L+ L +E+
Sbjct: 141 LMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSET 200
Query: 65 TQ--VIGLVSTG 74
+ V G+VS G
Sbjct: 201 ERWFVGGIVSWG 212
>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|D Chain D, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|F Chain F, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1TB6|H Chain H, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|2B5T|B Chain B, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|2B5T|D Chain D, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|3B9F|H Chain H, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
pdb|3GIS|B Chain B, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|D Chain D, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|F Chain F, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3LU9|B Chain B, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|3LU9|E Chain E, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|4DT7|B Chain B, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DT7|D Chain D, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DY7|B Chain B, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|E Chain E, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 259
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 135/291 (46%), Gaps = 57/291 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQAD 337
+ +I + ++ CAG+ ++G + DAC + D
Sbjct: 175 DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EGD 204
Query: 338 SGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
+GGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 205 AGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC D+GGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|3R3G|B Chain B, Structure Of Human Thrombin With Residues 145-150 Of
Murine Thrombin
Length = 259
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 135/293 (46%), Gaps = 61/293 (20%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWG-----W-TNENPSQGRRSNILQKVALSVVSNQVCQAWY 278
P + SL + V GWG W TN N Q ++LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLRETWTTNINEIQ---PSVLQVVNLPIVERPVCK--- 174
Query: 279 QSEGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQ 335
+ +I + ++ CAG+ ++G + DAC +
Sbjct: 175 --DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------E 202
Query: 336 ADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
DSGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 203 GDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5G|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5H|A Chain A, Factor Xa - Cation Inhibitor Complex
Length = 234
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 128/278 (46%), Gaps = 55/278 (19%)
Query: 117 IVGGLAANPGEFPW-IVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
IVGG GE PW + + FCGGTI+ E +I+TAAHCL A + V +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL------YQAKRFKVRV 54
Query: 176 KEHDLSR----PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLP-- 229
+ + + ++ V V ++ H + +++ DIA+L L I + + PACLP
Sbjct: 55 GDRNTEQEEGGEAVHEVEV--VIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 230 --SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINV 287
+ S ++++ V+G+G T+E +G +S L+ + + V C+ +
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTHE---KGEQSTRLKMLEVPYVDRNSCKL-----SSSFII 164
Query: 288 KESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGA 347
++ CAG++ +DAC Q DSGGP +
Sbjct: 165 TQNMFCAGYDTKQEDAC------------------------------QGDSGGPHVTRFK 194
Query: 348 ESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
++ V G+VS G GCAR G+YT++T ++ WI ++
Sbjct: 195 DTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ ++ CAG++ +DAC DSGGP + ++ V G+VS G G
Sbjct: 164 ITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEG 208
>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|N Chain N, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|O Chain O, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|P Chain P, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1E0F|D Chain D, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|F Chain F, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|E Chain E, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
Length = 259
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 134/291 (46%), Gaps = 57/291 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFIENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQAD 337
+ +I + ++ CAG+ ++G + DAC + D
Sbjct: 175 DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EGD 204
Query: 338 SGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
SGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of
Complement Protease C1r
Length = 329
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 127/296 (42%), Gaps = 50/296 (16%)
Query: 99 PIAGVPCGRSLASRRTGKIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHC 158
P+ G P +R I+GG A G FPW V HG GG ++ ++WI+TAAH
Sbjct: 75 PVCGKPVNPVEQRQR---IIGGQKAKMGNFPWQVFTNIHGRG--GGALLGDRWILTAAHT 129
Query: 159 LC-NGPSPLSASQINVTLKEHDLSR-PSISTVPVLRIMFHPSH---SCSSFNNDIALLEL 213
L S + ++V L ++ + P+ R+ HP + +F DIALLEL
Sbjct: 130 LYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLEL 189
Query: 214 TRSIQWSDLIRPACLPSGSLDYSEQSV-TVAGWGWTNENPSQGRRSNILQKVALSVVSNQ 272
S+ + P CLP Y + V+G+G E + ++ L+ V L V + Q
Sbjct: 190 ENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEE-----KIAHDLRFVRLPVANPQ 244
Query: 273 VCQAWYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDP 332
C+ W + + + ++ CAGH +DAC
Sbjct: 245 ACENWLRGKNRMDVFSQNMFCAGHPSLKQDAC---------------------------- 276
Query: 333 PLQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
Q DSGG + + + G+VS GIGC+R G YT++ Y+ WI ++
Sbjct: 277 --QGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWIKKEME 328
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
L+ V L V + Q C+ W + + + ++ CAGH +DAC DSGG + +
Sbjct: 233 LRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTD 292
Query: 66 Q--VIGLVSTGIG 76
+ G+VS GIG
Sbjct: 293 RWVATGIVSWGIG 305
>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2
pdb|4FXG|J Chain J, Complement C4 In Complex With Masp-2
Length = 242
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 131/278 (47%), Gaps = 48/278 (17%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV-TL 175
I GG A PG+FPW V + GG G ++++ W++TAAH + SA I + TL
Sbjct: 1 IYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTL 58
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSS-FNNDIALLELTRSIQWSDLIRPACLP---SG 231
K LS P + + H ++ + F+NDIAL++L + + I P CLP +
Sbjct: 59 KR--LS-PHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAE 115
Query: 232 SLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGK-KINVKES 290
S ++ T +GWG T +G + L V + +V +Q C A Y+ + +V +
Sbjct: 116 SFMRTDDIGTASGWGLT----QRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTAN 171
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
+CAG E GGKD+C + D+GG L+ L +E+
Sbjct: 172 MLCAGLESGGKDSC------------------------------RGDAGGALVFLDSETE 201
Query: 351 Q--VIGLVSTG-IGCARPRLPGLYTRLTRYIGWISDTL 385
+ V G+VS G + C G+YT++ YI WI + +
Sbjct: 202 RWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 239
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGK-KINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES 64
L V + +V +Q C A Y+ + +V + +CAG E GGKD+C D+GG L+ L +E+
Sbjct: 141 LMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDAGGALVFLDSET 200
Query: 65 TQ--VIGLVSTG 74
+ V G+VS G
Sbjct: 201 ERWFVGGIVSWG 212
>pdb|2BOK|A Chain A, Factor Xa- Cation
pdb|2JKH|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|A Chain A, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 128/278 (46%), Gaps = 55/278 (19%)
Query: 117 IVGGLAANPGEFPW-IVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
IVGG GE PW + + FCGGTI+ E +I+TAAHCL A + V +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL------YQAKRFKVRV 54
Query: 176 KEHDLSR----PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLP-- 229
+ + + ++ V V ++ H + +++ DIA+L L I + + PACLP
Sbjct: 55 GDRNTEQEEGGEAVHEVEV--VIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 230 --SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINV 287
+ S ++++ V+G+G T+E +G +S L+ + + V C+ +
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTHE---KGEQSTRLKMLEVPYVDRNSCKL-----SSSFII 164
Query: 288 KESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGA 347
++ CAG++ +DAC Q DSGGP +
Sbjct: 165 TQNMFCAGYDTKQEDAC------------------------------QGDSGGPHVTRFK 194
Query: 348 ESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
++ V G+VS G GCAR G+YT++T ++ WI ++
Sbjct: 195 DTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
+ ++ CAG++ +DAC DSGGP + ++ V G+VS G G
Sbjct: 164 ITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEG 208
>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|D Chain D, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|F Chain F, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3HK3|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(ONE Molecule In The Asymmetric Unit)
pdb|3HK6|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HK6|D Chain D, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HKI|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
pdb|3HKI|E Chain E, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
Length = 258
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 130/293 (44%), Gaps = 61/293 (20%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHC+ P + + +
Sbjct: 1 IVEGWDAEKGIAPWQVMLFRKSPQELLCGASLISDRWVLTAAHCILYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R ++ + +L +I HP ++ + + DIALL+L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCL 120
Query: 229 PSG----SLDYSEQSVTVAGWG-----W-TNENPSQGRRSNILQKVALSVVSNQVCQAWY 278
P SL + V GWG W TN N Q ++LQ V L +V VC+A
Sbjct: 121 PDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQ---PSVLQVVNLPIVERPVCKA-- 175
Query: 279 QSEGKKINVKESQMCAGHEQGGK---DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQ 335
+I + ++ CAG + DAC +
Sbjct: 176 ---STRIRITDNMFCAGFKVNDTKRGDAC------------------------------E 202
Query: 336 ADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
DSGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 203 GDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRKGKYGFYTHVFRLKRWIQKVID 255
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGK---DACWADSGGPLMLL 60
++LQ V L +V VC+A +I + ++ CAG + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCKA-----STRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSAGAG 230
>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165
Length = 250
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 133/287 (46%), Gaps = 56/287 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVT 174
IV G A G PW V L R CG ++I ++W++TAAHCL P + ++ ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 175 LKEHDLSRPS----ISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
++ SR + I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTAYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKK 284
P + SL + V GWG N + + ++LQ V L +V VC+ + +
Sbjct: 121 PDRETAASLLQAGYKGRVTGWG----NLKETGQPSVLQVVNLPIVERPVCK-----DSTR 171
Query: 285 INVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGP 341
I + ++ CAG+ ++G + DAC + DSGGP
Sbjct: 172 IRITDNMFCAGYKPDEGKRGDAC------------------------------EGDSGGP 201
Query: 342 LMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 202 FVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 248
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 151 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 205
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 206 SPFNNRWYQMGIVSWGEG 223
>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self-
Inhibited Conformation
pdb|3BEI|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A
Self_inhibited Conformation
pdb|3BEF|B Chain B, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3BEF|E Chain E, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3QDZ|B Chain B, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4.
pdb|3QDZ|D Chain D, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4
Length = 259
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 135/291 (46%), Gaps = 57/291 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + +IAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRNIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQAD 337
+ +I + ++ CAG+ ++G + DAC + D
Sbjct: 175 DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EGD 204
Query: 338 SGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
SGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186,
186a, 186b, 186c And 222 Replaced By Murine Thrombin
Equivalents
Length = 259
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 131/291 (45%), Gaps = 57/291 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGHEQGGK---DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQAD 337
+ +I + ++ CAG + DAC + D
Sbjct: 175 DSTRIRITDNMFCAGFKVNDTKRGDAC------------------------------EGD 204
Query: 338 SGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
SGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKKWIQKVID 255
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGK---DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|1H9H|E Chain E, Complex Of Eeti-Ii With Porcine Trypsin
Length = 231
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 129/275 (46%), Gaps = 53/275 (19%)
Query: 117 IVGGLAANPGE-FPWIVSLKRHGGHFC-GGTIIHEQWIVTAAHCLCNGPSPLSASQINVT 174
IVGG + P+ VSL G HFC GG++I+ QW+V+AAHC S+I V
Sbjct: 1 IVGGYTCSAANSIPYQVSLNS-GSHFCSGGSLINSQWVVSAAHC-------SYKSRIQVR 52
Query: 175 LKEH--DLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGS 232
L EH D+ + + +I+ HP+ + ++ +NDI L++L+ + + LP
Sbjct: 53 LGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSC 112
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQ-KVALSVVSNQVCQAWYQSEGKKINVKESQ 291
+ ++GWG N S ++LQ + V+S+ C++ Y + + +
Sbjct: 113 AAAGTECSLISGWG--NTKSSGSSYPSLLQCSLKAPVLSDSSCKSSYPGQ-----ITGNM 165
Query: 292 MCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQ 351
+C G +GGKD+C Q DSGGP++ + Q
Sbjct: 166 ICVGFLEGGKDSC-----------------------------SQGDSGGPVV---CSNGQ 193
Query: 352 VIGLVSTGIGC-ARPRLPGLYTRLTRYIGWISDTL 385
+ G+VS G GC A+ PG+YT++ Y+ WI T+
Sbjct: 194 LQGIVSWGYGCSAQKNKPGVYTKVCNYVNWIQQTI 228
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 9/65 (13%)
Query: 13 VVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDAC-WADSGGPLMLLGAESTQVIGLV 71
V+S+ C++ Y + + + +C G +GGKD+C DSGGP++ + Q+ G+V
Sbjct: 147 VLSDSSCKSSYPGQ-----ITGNMICVGFLEGGKDSCSQGDSGGPVV---CSNGQLQGIV 198
Query: 72 STGIG 76
S G G
Sbjct: 199 SWGYG 203
>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure
Length = 227
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 124/276 (44%), Gaps = 60/276 (21%)
Query: 117 IVGGLAANPGEFPWIVSL--KRHG-GHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
I+GG A P P++ L K G H CGG ++ E +++TAAHCL S INV
Sbjct: 1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCL--------GSSINV 52
Query: 174 TLKEHDLSRPSIS--TVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSG 231
TL H++ + +PV R + HP ++ + NDI LL+LTR +D + P LP
Sbjct: 53 TLGAHNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRS 112
Query: 232 SLDYSEQSV-TVAGWGWTNEN-PSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKE 289
+ + +VAGWG N PS + LQ+V L V S + C A +++ +
Sbjct: 113 LAEVKPGMMCSVAGWGRLGVNMPSTDK----LQEVDLEVQSEEKCIARFKNY-----IPF 163
Query: 290 SQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAES 349
+Q+CAG PS R DSGGPL+ G
Sbjct: 164 TQICAGD-------------------------PSKRKN-----SFSGDSGGPLVCNGVAQ 193
Query: 350 TQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+VS G P +YTR++ ++ WI T+
Sbjct: 194 ----GIVSYGRNDG--TTPDVYTRISSFLSWIHSTM 223
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
++ LQ+V L V S + C A +++ + +Q+CAG K++ DSGGPL+ G
Sbjct: 137 TDKLQEVDLEVQSEEKCIARFKNY-----IPFTQICAGDPSKRKNSFSGDSGGPLVCNGV 191
Query: 63 ESTQVIGLVSTG 74
G+VS G
Sbjct: 192 AQ----GIVSYG 199
>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine
Thrombin
Length = 259
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 130/293 (44%), Gaps = 61/293 (20%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHC+ P + + +
Sbjct: 1 IVEGWDAEKGIAPWQVMLFRKSPQELLCGASLISDRWVLTAAHCILYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R ++ + +L +I HP ++ + + DIALL+L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCL 120
Query: 229 PSG----SLDYSEQSVTVAGWG-----W-TNENPSQGRRSNILQKVALSVVSNQVCQAWY 278
P SL + V GWG W TN N Q ++LQ V L +V VC+A
Sbjct: 121 PDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQ---PSVLQVVNLPIVERPVCKA-- 175
Query: 279 QSEGKKINVKESQMCAGHEQGGK---DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQ 335
+I + ++ CAG + DAC +
Sbjct: 176 ---STRIRITDNMFCAGFKVNDTKRGDAC------------------------------E 202
Query: 336 ADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
DSGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 203 GDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKAWIQKVID 255
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGK---DACWADSGGPLMLL 60
++LQ V L +V VC+A +I + ++ CAG + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCKA-----STRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease
C1r
Length = 328
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 127/296 (42%), Gaps = 50/296 (16%)
Query: 99 PIAGVPCGRSLASRRTGKIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHC 158
P+ G P +R I+GG A G FPW V HG GG ++ ++WI+TAAH
Sbjct: 75 PVCGKPVNPVEQRQR---IIGGQKAKMGNFPWQVFTNIHGRG--GGALLGDRWILTAAHT 129
Query: 159 LC-NGPSPLSASQINVTLKEHDLSR-PSISTVPVLRIMFHPSH---SCSSFNNDIALLEL 213
L S + ++V L ++ + P+ R+ HP + +F DIALLEL
Sbjct: 130 LYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLEL 189
Query: 214 TRSIQWSDLIRPACLPSGSLDYSEQSV-TVAGWGWTNENPSQGRRSNILQKVALSVVSNQ 272
S+ + P CLP Y + V+G+G E + ++ L+ V L V + Q
Sbjct: 190 ENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEE-----KIAHDLRFVRLPVANPQ 244
Query: 273 VCQAWYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDP 332
C+ W + + + ++ CAGH +DAC
Sbjct: 245 ACENWLRGKNRMDVFSQNMFCAGHPSLKQDAC---------------------------- 276
Query: 333 PLQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
Q D+GG + + + G+VS GIGC+R G YT++ Y+ WI ++
Sbjct: 277 --QGDAGGVFAVRDPNTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWIKKEME 328
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
L+ V L V + Q C+ W + + + ++ CAGH +DAC D+GG + +
Sbjct: 233 LRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDAGGVFAVRDPNTD 292
Query: 66 Q--VIGLVSTGIG 76
+ G+VS GIG
Sbjct: 293 RWVATGIVSWGIG 305
>pdb|2ASU|B Chain B, Crystal Structure Of The Beta-Chain Of HgflMSP
Length = 234
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 120/275 (43%), Gaps = 52/275 (18%)
Query: 117 IVGGLAANPGEFPWIVSLK-RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQI--NV 173
+VGG +PG PW VSL+ R G HFCGG+++ EQWI+TA C + PL+ ++
Sbjct: 1 VVGG---HPGNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGT 57
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSG-S 232
+ PS+ VPV +++ PS S + LL+L RS+ + + CLP
Sbjct: 58 LFQNPQHGEPSLQRVPVAKMVCGPSGS------QLVLLKLERSVTLNQRVALICLPPEWY 111
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
+ +AGWG T + +L L+V+SNQ C ++ V+ES+M
Sbjct: 112 VVPPGTKCEIAGWGETKGTGN----DTVLNVALLNVISNQECNIKHRGR-----VRESEM 162
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
C AC + D GGPL S +
Sbjct: 163 CTEGLLAPVGAC------------------------------EGDYGGPLACFTHNSWVL 192
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLDI 387
G++ CAR R P ++TR++ ++ WI + +
Sbjct: 193 EGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMRL 227
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
+L L+V+SNQ C ++ V+ES+MC AC D GGPL
Sbjct: 133 DTVLNVALLNVISNQECNIKHRGR-----VRESEMCTEGLLAPVGACEGDYGGPLACFTH 187
Query: 63 ESTQVIGLV 71
S + G++
Sbjct: 188 NSWVLEGII 196
>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
pdb|2QY0|D Chain D, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
Length = 242
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 121/278 (43%), Gaps = 47/278 (16%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLC-NGPSPLSASQINVTL 175
I+GG A G FPW V HG GG ++ ++WI+TAAH L S + ++V L
Sbjct: 1 IIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFL 58
Query: 176 KEHDLSR-PSISTVPVLRIMFHPSH---SCSSFNNDIALLELTRSIQWSDLIRPACLPSG 231
++ + P+ R+ HP + +F DIALLEL S+ + P CLP
Sbjct: 59 GHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDN 118
Query: 232 SLDYSEQSV-TVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKES 290
Y + V+G+G E + ++ L+ V L V + Q C+ W + + + ++
Sbjct: 119 DTFYDLGLMGYVSGFGVMEE-----KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQN 173
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
CAGH +DAC Q DSGG + +
Sbjct: 174 MFCAGHPSLKQDAC------------------------------QGDSGGVFAVRDPNTD 203
Query: 351 Q--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
+ G+VS GIGC+R G YT++ Y+ WI ++
Sbjct: 204 RWVATGIVSWGIGCSRGY--GFYTKVLNYVDWIKKEME 239
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
L+ V L V + Q C+ W + + + ++ CAGH +DAC DSGG + +
Sbjct: 144 LRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTD 203
Query: 66 Q--VIGLVSTGIG 76
+ G+VS GIG
Sbjct: 204 RWVATGIVSWGIG 216
>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
Length = 399
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 127/296 (42%), Gaps = 50/296 (16%)
Query: 99 PIAGVPCGRSLASRRTGKIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHC 158
P+ G P + +I+GG A G FPW V HG GG ++ ++WI+TAAH
Sbjct: 143 PVCGKPVN---PVEQRQQIIGGQKAKMGNFPWQVFTNIHGRG--GGALLGDRWILTAAHT 197
Query: 159 LC-NGPSPLSASQINVTLKEHDLSR-PSISTVPVLRIMFHPSH---SCSSFNNDIALLEL 213
L S + ++V L ++ + P+ R+ HP + +F DIALLEL
Sbjct: 198 LYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLEL 257
Query: 214 TRSIQWSDLIRPACLPSGSLDYSEQSV-TVAGWGWTNENPSQGRRSNILQKVALSVVSNQ 272
S+ + P CLP Y + V+G+G E + ++ L+ V L V + Q
Sbjct: 258 ENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEE-----KIAHDLRFVRLPVANPQ 312
Query: 273 VCQAWYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDP 332
C+ W + + + ++ CAGH +DAC
Sbjct: 313 ACENWLRGKNRMDVFSQNMFCAGHPSLKQDAC---------------------------- 344
Query: 333 PLQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
Q DSGG + + + G+VS GIGC+R G YT++ Y+ WI ++
Sbjct: 345 --QGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWIKKEME 396
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
L+ V L V + Q C+ W + + + ++ CAGH +DAC DSGG + +
Sbjct: 301 LRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTD 360
Query: 66 Q--VIGLVSTGIG 76
+ G+VS GIG
Sbjct: 361 RWVATGIVSWGIG 373
>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors
Length = 259
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 134/291 (46%), Gaps = 57/291 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQAD 337
+ +I + ++ CAG+ ++G + DAC + D
Sbjct: 175 DSTRIRITDNMFCAGYKPDEGKRGDAC------------------------------EGD 204
Query: 338 SGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
SGGP ++ + + +G+VS G GC G YT + R WI +D
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSWGEGCRDDGKYGFYTHVFRLKKWIQKVID 255
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP ++
Sbjct: 158 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 212
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 213 SPFNNRWYQMGIVSWGEG 230
>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt
Length = 230
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 119/269 (44%), Gaps = 48/269 (17%)
Query: 117 IVGGLAANPGEFPWIVSL-KRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
+VGG A GEFP++V L FCGG + + ++TAAHC+ + S I T
Sbjct: 1 VVGGTRAAQGEFPFMVRLINEENEGFCGGALYAQDIVLTAAHCVSGSGNNTS---ITATG 57
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
DL S V +++ P + ++ D AL++L + I +P + + Y
Sbjct: 58 GVVDLQSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPIN-----QPTLKIATTTAY 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
++ + TVAGWG E SQ R L K + VS+ C +S I V +CAG
Sbjct: 113 NQGTFTVAGWGANREGGSQQR---YLLKANVPFVSDAAC----RSSSSFILVANEMICAG 165
Query: 296 H-EQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLL-GAESTQVI 353
+ + GG D C Q DSGGP+ A+ +
Sbjct: 166 YPDTGGVDTC------------------------------QGDSGGPMFRKDNADEWIQV 195
Query: 354 GLVSTGIGCARPRLPGLYTRLTRYIGWIS 382
G+VS G GCARP PG+YT ++ + I+
Sbjct: 196 GIVSWGYGCARPGYPGVYTEVSTFASAIA 224
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH-EQGGKDACWADSGGPLMLL-GAE 63
L K + VS+ C+ S I V +CAG+ + GG D C DSGGP+ A+
Sbjct: 135 LLKANVPFVSDAACR----SSSSFILVANEMICAGYPDTGGVDTCQGDSGGPMFRKDNAD 190
Query: 64 STQVIGLVSTGIG 76
+G+VS G G
Sbjct: 191 EWIQVGIVSWGYG 203
>pdb|1KIG|H Chain H, Bovine Factor Xa
Length = 241
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 129/280 (46%), Gaps = 59/280 (21%)
Query: 117 IVGGLAANPGEFPW---IVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG GE PW +V+ + G FCGGTI++E +++TAAHCL A + V
Sbjct: 1 IVGGRDCAEGECPWQALLVNEENEG--FCGGTILNEFYVLTAAHCL------HQAKRFTV 52
Query: 174 TLKEHDLSRPSISTV--PVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSG 231
+ + + + + + V + H +++ DIA+L L I++ + PACLP
Sbjct: 53 RVGDRNTEQEEGNEMAHEVEMTVKHSRFVKETYDFDIAVLRLKTPIRFRRNVAPACLPEK 112
Query: 232 SLDYSEQSVT------VAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKI 285
D++E ++ V+G+G T+E +GR S+ L+ + + V C+
Sbjct: 113 --DWAEATLMTQKTGIVSGFGRTHE---KGRLSSTLKMLEVPYVDRSTCKL-----SSSF 162
Query: 286 NVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLL 345
+ + CAG++ +DAC Q DSGGP +
Sbjct: 163 TITPNMFCAGYDTQPEDAC------------------------------QGDSGGPHVTR 192
Query: 346 GAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
++ V G+VS G GCAR G+YT+++ ++ WI +
Sbjct: 193 FKDTYFVTGIVSWGEGCARKGKFGVYTKVSNFLKWIDKIM 232
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R S+ L+ + + V C+ + + CAG++ +DAC DSGGP +
Sbjct: 138 RLSSTLKMLEVPYVDRSTCKL-----SSSFTITPNMFCAGYDTQPEDACQGDSGGPHVTR 192
Query: 61 GAESTQVIGLVSTGIG 76
++ V G+VS G G
Sbjct: 193 FKDTYFVTGIVSWGEG 208
>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K
pdb|1MZD|A Chain A, Crystal Structure Of Human Pro-Granzyme K
Length = 240
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 123/276 (44%), Gaps = 49/276 (17%)
Query: 116 KIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHC---LCNGPSPLSASQIN 172
+I+GG +P P++ S++ G H CGG +I QW++TAAHC G SP
Sbjct: 2 EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSP------T 55
Query: 173 VTLKEHDLSRPSISTVPVLRIMFHPSHSCSSF--NNDIALLELTRSIQWSDLIRPACLPS 230
V L H LS+ S + F P +S +NDI L++L + + + ++ + S
Sbjct: 56 VVLGAHSLSKNEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRS 115
Query: 231 GSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKES 290
+ S V GWG T +P R S+ L++V ++V+S ++C + G K+
Sbjct: 116 KTSLRSGTKCKVTGWGAT--DPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKD- 172
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
+CAG +G KD+C + D+GGPL+ G
Sbjct: 173 MVCAGDAKGQKDSC------------------------------KGDAGGPLICKGV--- 199
Query: 351 QVIGLVSTGIGCARPRLPGLYTRLT-RYIGWISDTL 385
+VS G C PG+YT LT +Y WI L
Sbjct: 200 -FHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNL 234
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R S+ L++V ++V+S ++C + G K+ +CAG +G KD+C D+GGPL+
Sbjct: 139 RPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKD-MVCAGDAKGQKDSCKGDAGGPLICK 197
Query: 61 GAESTQVIGLVSTGIGSPTSVVQLLTR 87
G V G G+ + + LLT+
Sbjct: 198 GVFHAIVSGGHECGVATKPGIYTLLTK 224
>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par3
pdb|2PV9|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par4
Length = 258
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 130/293 (44%), Gaps = 61/293 (20%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHC+ P + + +
Sbjct: 1 IVEGWDAEKGIAPWQVMLFRKSPQELLCGASLISDRWVLTAAHCILYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R ++ + +L +I HP ++ + + DIALL+L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCL 120
Query: 229 PSG----SLDYSEQSVTVAGWG-----W-TNENPSQGRRSNILQKVALSVVSNQVCQAWY 278
P SL + V GWG W TN N Q ++LQ V L +V VC+A
Sbjct: 121 PDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQ---PSVLQVVNLPIVERPVCKA-- 175
Query: 279 QSEGKKINVKESQMCAGHEQGGK---DACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQ 335
+I + ++ CAG + DAC +
Sbjct: 176 ---STRIRITDNMFCAGFKVNDTKRGDAC------------------------------E 202
Query: 336 ADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
D+GGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 203 GDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKRWIQKVID 255
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 5 ILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGK---DACWADSGGPLMLLG 61
+LQ V L +V VC+A +I + ++ CAG + DAC D+GGP ++
Sbjct: 159 VLQVVNLPIVERPVCKA-----STRIRITDNMFCAGFKVNDTKRGDACEGDAGGPFVMKS 213
Query: 62 AESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 214 PFNNRWYQMGIVSWGEG 230
>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
pdb|1AO5|B Chain B, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
Length = 237
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 121/283 (42%), Gaps = 64/283 (22%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
+VGG PW V++ H CGG ++ W++TAAHC + Q V L
Sbjct: 1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYVD--------QYEVWLG 52
Query: 177 EHDL--SRPSISTVPVLRIMFHPSHSCS-----------SFNNDIALLELTRSIQWSDLI 223
++ L PS V + HP + S F++D+ LL L++ +D++
Sbjct: 53 KNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVV 112
Query: 224 RPACLPSGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGK 283
+P LP+ + + GW + P++ ++ + LQ V ++++ N+ C Y +
Sbjct: 113 KPIALPTKEPKPGSKCLAS---GWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQK-- 167
Query: 284 KINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLM 343
V + +CAG GGKD C + DSGGPL+
Sbjct: 168 ---VTDVMLCAGEMGGGKDTC------------------------------RDDSGGPLI 194
Query: 344 LLGAESTQVIGLVSTG-IGCARPRLPGLYTRLTRYIGWISDTL 385
G + G S G + C +P +P +YT L ++ WI DT+
Sbjct: 195 CDGI----LQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTM 233
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
++ + LQ V ++++ N+ C Y + V + +CAG GGKD C DSGGPL+
Sbjct: 142 QKPDDLQCVFITLLPNENCAKVYLQK-----VTDVMLCAGEMGGGKDTCRDDSGGPLICD 196
Query: 61 G 61
G
Sbjct: 197 G 197
>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1
Length = 261
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 136/295 (46%), Gaps = 61/295 (20%)
Query: 117 IVGGLAANPGEFPWIVSL----KRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSA 168
IV G A G PW V L +R G CG ++I ++W++TAAHCL P +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFAKHRRSPGERFLCGASLISDRWVLTAAHCLLYPPWDKNFTE 60
Query: 169 SQINVTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIR 224
+ + V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I
Sbjct: 61 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 120
Query: 225 PACLP----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQA 276
P CLP + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK- 178
Query: 277 WYQSEGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTPHVARGRVYPSHRSGVHWDPP 333
+ +I + ++ CA + ++G + DAC
Sbjct: 179 ----DSTRIRITDNMFCAYYKPDEGKRGDAC----------------------------- 205
Query: 334 LQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
+ DSGGP ++ + + +G+VS G GC R G YT + R WI +D
Sbjct: 206 -EGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 259
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 10/78 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLMLL 60
++LQ V L +V VC+ + +I + ++ CA + ++G + DAC DSGGP ++
Sbjct: 162 SVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAYYKPDEGKRGDACEGDSGGPFVMK 216
Query: 61 GAESTQ--VIGLVSTGIG 76
+ + +G+VS G G
Sbjct: 217 SPFNNRWYQMGIVSWGEG 234
>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii
From The Beetle Holotrichia Diomphalia
Length = 394
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 129/303 (42%), Gaps = 54/303 (17%)
Query: 100 IAGVPCGRSLASRRTGKIVGGLAANPGEFPWIVSLKR--------HGGHFCGGTIIHEQW 151
G+ R L + TG+ A GEFPW+V++ + CGG++I
Sbjct: 117 FCGIRNERGLDFKITGQTN---EAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSV 173
Query: 152 IVTAAHCLCNGPSPLSASQINV----TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNND 207
++T AHC+ + S L A +I TL E + R + +++ H + + + ND
Sbjct: 174 VLTGAHCVNSYQSNLDAIKIRAGEWDTLTEKE--RLPYQERKIRQVIIHSNFNPKTVVND 231
Query: 208 IALLELTRSIQWSDLIRPACLPSGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALS 267
+ALL L R + +D I CLP S + +GWG E S+ R SNIL+K+ L
Sbjct: 232 VALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWG-KKEFGSRHRYSNILKKIQLP 290
Query: 268 VVSNQVCQAWYQSE--GKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHR 325
V CQA ++ G K + ++ +CAG EQ GKD C
Sbjct: 291 TVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQ-GKDTC--------------------- 328
Query: 326 SGVHWDPPLQADSGGPLMLLGAES---TQVIGLVSTGIGCARPRLPGLYTRLTRYIGWIS 382
D G PL + +G+V+ GIGC +PG+Y + + WI
Sbjct: 329 ---------TGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWID 379
Query: 383 DTL 385
+
Sbjct: 380 QEM 382
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSE--GKKINVKESQMCAGHEQGGKDACWADSGGPLM 58
R SNIL+K+ L V CQA ++ G K + ++ +CAG EQ GKD C D G PL
Sbjct: 279 RYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQ-GKDTCTGDGGSPLF 337
Query: 59 LLGAES---TQVIGLVSTGIG 76
+ +G+V+ GIG
Sbjct: 338 CPDPRNPSRYMQMGIVAWGIG 358
>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|B Chain B, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|C Chain C, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
Length = 241
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 128/275 (46%), Gaps = 44/275 (16%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGG---HFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
++GG A+PGEFPW +S +R G H CG +++ ++A+HC+ +G P + I
Sbjct: 1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCV-DGVLPNNIRVIAG 59
Query: 174 TLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS-GS 232
++ D S + V + + +S++NDIA+L L SI I+ A LP+ +
Sbjct: 60 LWQQSDTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNN 119
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
DY+ + ++GWG T+ +ILQK ++ V++ C A G N+ ++ +
Sbjct: 120 NDYAGTTCVISGWGRTD---GTNNLPDILQKSSIPVITTAQCTAAMVGVGGA-NIWDNHI 175
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
C G AC DSGGPL T+V
Sbjct: 176 CVQDPAGNTGAC------------------------------NGDSGGPLNCPDG-GTRV 204
Query: 353 IG----LVSTGIGCARPRLPGLYTRLTRYIGWISD 383
+G +VS+G+G P P +YTR++ Y+GWI D
Sbjct: 205 VGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGD 239
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
+ILQK ++ V++ C A G N+ ++ +C G AC DSGGPL
Sbjct: 143 DILQKSSIPVITTAQCTAAMVGVGGA-NIWDNHICVQDPAGNTGACNGDSGGPLNCPDG- 200
Query: 64 STQVIG----LVSTGIGS 77
T+V+G +VS+G+G+
Sbjct: 201 GTRVVGVTSWVVSSGLGA 218
>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a
pdb|2PGQ|B Chain B, Human Thrombin Mutant C191a-C220a In Complex With The
Inhibitor Ppack
Length = 259
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 132/289 (45%), Gaps = 53/289 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWGWTNE----NPSQGRRSNILQKVALSVVSNQVCQAWYQS 280
P + SL + V GWG E N +G+ S +LQ V L +V VC+
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCK----- 174
Query: 281 EGKKINVKESQMCAGHE-QGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSG 339
+ +I + ++ CAG++ GK RG + DSG
Sbjct: 175 DSTRIRITDNMFCAGYKPDEGK---------------RGDA-------------AEGDSG 206
Query: 340 GPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
GP ++ + + +G+VS G G R G YT + R WI +D
Sbjct: 207 GPFVMKSPFNNRWYQMGIVSWGEGADRDGKYGFYTHVFRLKKWIQKVID 255
>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|B Chain B, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|C Chain C, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|D Chain D, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|E Chain E, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|F Chain F, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|G Chain G, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|H Chain H, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|I Chain I, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|J Chain J, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|K Chain K, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|L Chain L, Crystal Structure Of Active Human Granzyme H
Length = 226
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 121/276 (43%), Gaps = 58/276 (21%)
Query: 117 IVGGLAANPGEFPWIVS---LKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
I+GG A P P++ L+ CGG ++ + +++TAAHC S INV
Sbjct: 1 IIGGHEAKPHSRPYMAFVQFLQEKSRKRCGGILVRKDFVLTAAHC--------QGSSINV 52
Query: 174 TLKEHDLSRPSIST--VPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSG 231
TL H++ + +PV R + HP+++ +F+NDI LL+L R +W+ +RP LPS
Sbjct: 53 TLGAHNIKEQERTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKWTTAVRPLRLPSS 112
Query: 232 SLDYSE-QSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKES 290
Q +VAGWG+ S + LQ+V L+V + C+ + + +
Sbjct: 113 KAQVKPGQLCSVAGWGYV----SMSTLATTLQEVLLTVQKDCQCERLFHGN----YSRAT 164
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
++C G + + + DSGGPL+
Sbjct: 165 EICVGDPKKTQTG------------------------------FKGDSGGPLVCKDVAQ- 193
Query: 351 QVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
G++S G P PG+Y +++ ++ WI T+
Sbjct: 194 ---GILSYGNKKGTP--PGVYIKVSHFLPWIKRTMK 224
>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 253
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 137/289 (47%), Gaps = 58/289 (20%)
Query: 111 SRRTGKIVGGLAANPGEFPWIVSLKRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSPL 166
SR + ++V G A P + W VSL+ H CGG++I W+VTA HC+
Sbjct: 6 SRPSSRVVNGEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIS------ 59
Query: 167 SASQINVTLKEHDLS--RPSISTVPVL--RIMFHP--SHSCSSFNNDIALLELTRSIQWS 220
++ V L E+D S + S +P+ + HP + +C + NDIAL++L+RS Q
Sbjct: 60 TSRTYQVVLGEYDRSVLQGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLG 119
Query: 221 DLIRPACL-PSGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQ 279
D ++ A L P+G + +E ++GWG + G + LQ+ L VV + C Q
Sbjct: 120 DKVQLANLPPAGDILPNEAPCYISGWG---RLYTGGPLPDKLQEALLPVVDYEHCS---Q 173
Query: 280 SEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSG 339
+ I VK++ +CAG + RSG DSG
Sbjct: 174 YDWWGITVKKTMVCAGGDT--------------------------RSGC------DGDSG 201
Query: 340 GPLMLLGAEST-QVIGLVS--TGIGCARPRLPGLYTRLTRYIGWISDTL 385
GPL A+ + QV G+ S + GC + P ++TR++ +I WI++T+
Sbjct: 202 GPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWINETI 250
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
LQ+ L VV + C Q + I VK++ +CAG + + C DSGGPL A+ +
Sbjct: 158 LQEALLPVVDYEHCS---QYDWWGITVKKTMVCAGGDT--RSGCDGDSGGPLNCPAADGS 212
Query: 66 -QVIGLVS 72
QV G+ S
Sbjct: 213 WQVHGVTS 220
>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M
pdb|2ZGH|A Chain A, Crystal Structure Of Active Granzyme M Bound To Its
Product
pdb|2ZKS|A Chain A, Structural Insights Into The Proteolytic Machinery Of
Apoptosis- Inducing Granzyme M
Length = 240
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 11/161 (6%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
I+GG P P++ SL+R+G H CGG ++H +W++TAAHCL +Q+ + L
Sbjct: 1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQ-----RMAQLRLVLG 55
Query: 177 EHDLSRPSISTVPVLRIMFHPSHS-CSSFNNDIALLELTRSIQWSDLIRPACLPSG-SLD 234
H L P + T + + HP + + ND+ALL+L ++ S IRP LPS +
Sbjct: 56 LHTLDSPGL-TFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVV 114
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQ 275
+ ++AGWG T++ GR S +L+++ L V+ ++C
Sbjct: 115 AAGTRCSMAGWGLTHQG---GRLSRVLRELDLQVLDTRMCN 152
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLM 58
R S +L+++ L V+ ++C G ++ S +C + + C DSGGPL+
Sbjct: 133 RLSRVLRELDLQVLDTRMCNNSRFWNG---SLSPSMVCLAADSKDQAPCKGDSGGPLV 187
>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXG|B Chain B, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXH|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXI|A Chain A, High Resolution Structure Of Human Kallikrein 7 In Complex
With Suc-Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXJ|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-ala-pro-phe-chloromethylketone And Copper
Length = 224
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 120/273 (43%), Gaps = 51/273 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
I+ G G PW V+L CGG +++E+W++TAAHC N + V L
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMN--------EYTVHLG 52
Query: 177 EHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDYS 236
L + + HP +S + ND+ L++L + S +++ LPS +
Sbjct: 53 SDTLGDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPS-RCEPP 111
Query: 237 EQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH 296
+ TV+GWG T +P S+++ V + ++S Q C Y+ ++ S +CAG
Sbjct: 112 GTTCTVSGWG-TTTSPDVTFPSDLMC-VDVKLISPQDCTKVYKDL-----LENSMLCAGI 164
Query: 297 EQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGLV 356
K+AC DSGGPL+ G + GLV
Sbjct: 165 PDSKKNAC------------------------------NGDSGGPLVCRGT----LQGLV 190
Query: 357 STG-IGCARPRLPGLYTRLTRYIGWISDTLDIH 388
S G C +P PG+YT++ ++ WI+DT+ H
Sbjct: 191 SWGTFPCGQPNDPGVYTQVCKFTKWINDTMKKH 223
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
L V + ++S Q C Y+ ++ S +CAG K+AC DSGGPL+ G
Sbjct: 134 LMCVDVKLISPQDCTKVYKDL-----LENSMLCAGIPDSKKNACNGDSGGPLVCRGT--- 185
Query: 66 QVIGLVSTG 74
+ GLVS G
Sbjct: 186 -LQGLVSWG 193
>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
pdb|1EQ9|B Chain B, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
Length = 222
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 125/269 (46%), Gaps = 49/269 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG A G++P+ VSL+ G H CG +I+ ++TAAHC+ +G S L+ +++V
Sbjct: 1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCV-DGLSNLNRLKVHVGT- 58
Query: 177 EHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDYS 236
+ S V + + ++ ND+AL+ LT I+++DL++P L + D
Sbjct: 59 --NYLSESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLE 116
Query: 237 EQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH 296
T+ GWG T G N LQ++ L V + C E + V +S +C
Sbjct: 117 SNPCTLTGWGSTRLG---GNTPNALQEIELIVHPQKQC------ERDQWRVIDSHICTLT 167
Query: 297 EQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGLV 356
++ G+ AC DSGGPL+ GA+ IG+V
Sbjct: 168 KR-GEGAC------------------------------HGDSGGPLVANGAQ----IGIV 192
Query: 357 STGIGCARPRLPGLYTRLTRYIGWISDTL 385
S G CA P +YTR++ ++ WI+ L
Sbjct: 193 SFGSPCALGE-PDVYTRVSSFVSWINANL 220
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
N LQ++ L V + C E + V +S +C ++G + AC DSGGPL+ GA+
Sbjct: 136 NALQEIELIVHPQKQC------ERDQWRVIDSHICTLTKRG-EGACHGDSGGPLVANGAQ 188
Query: 64 STQVIGLVSTGIGSPTSV 81
IG+VS GSP ++
Sbjct: 189 ----IGIVS--FGSPCAL 200
>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor
pdb|3TJV|A Chain A, Crystal Structure Of Human Granzyme H With A Peptidyl
Substrate
pdb|3TK9|A Chain A, Crystal Structure Of Human Granzyme H
Length = 226
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 121/276 (43%), Gaps = 58/276 (21%)
Query: 117 IVGGLAANPGEFPWIVS---LKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
I+GG A P P++ L+ CGG ++ + +++TAAHC S INV
Sbjct: 1 IIGGHEAKPHSRPYMAFVQFLQEKSRKRCGGILVRKDFVLTAAHC--------QGSSINV 52
Query: 174 TLKEHDLSRPSIST--VPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSG 231
TL H++ + +PV R + HP+++ +F+N+I LL+L R +W+ +RP LPS
Sbjct: 53 TLGAHNIKEQERTQQFIPVKRPIPHPAYNPKNFSNNIMLLQLERKAKWTTAVRPLRLPSS 112
Query: 232 SLDYSE-QSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKES 290
Q +VAGWG+ S + LQ+V L+V + C+ + + +
Sbjct: 113 KAQVKPGQLCSVAGWGYV----SMSTLATTLQEVLLTVQKDCQCERLFHGN----YSRAT 164
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
++C G + + + DSGGPL+
Sbjct: 165 EICVGDPKKTQTG------------------------------FKGDSGGPLVCKDVAQ- 193
Query: 351 QVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
G++S G P PG+Y +++ ++ WI T+
Sbjct: 194 ---GILSYGNKKGTP--PGVYIKVSHFLPWIKRTMK 224
>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B
pdb|1FQ3|B Chain B, Crystal Structure Of Human Granzyme B
Length = 227
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 127/280 (45%), Gaps = 67/280 (23%)
Query: 117 IVGGLAANPGEFPWIV--------SLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSA 168
I+GG A P P++ SLKR CGG +I + +++TAAHC
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKR-----CGGFLIQDDFVLTAAHCW--------G 47
Query: 169 SQINVTLKEHDLSR--PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPA 226
S INVTL H++ P+ +PV R + HP+++ +F+NDI LL+L R + + ++P
Sbjct: 48 SSINVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPL 107
Query: 227 CLPSGSLDYSE-QSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKI 285
LPS Q+ +VAGWG T G+ S+ LQ+V ++V ++ C +S+ +
Sbjct: 108 RLPSNKAQVKPGQTCSVAGWGQTA---PLGKHSHTLQEVKMTVQEDRKC----ESDLRHY 160
Query: 286 NVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLL 345
++C G + K + + DSGGPL+
Sbjct: 161 YDSTIELCVGDPEIKKTS------------------------------FKGDSGGPLVC- 189
Query: 346 GAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+ G+VS G P P T+++ ++ WI T+
Sbjct: 190 ---NKVAQGIVSYGRNNGMP--PRACTKVSSFVHWIKKTM 224
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLM 58
+ S+ LQ+V ++V ++ C+ S+ + ++C G + K + DSGGPL+
Sbjct: 135 KHSHTLQEVKMTVQEDRKCE----SDLRHYYDSTIELCVGDPEIKKTSFKGDSGGPLV 188
>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho
Length = 227
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 127/280 (45%), Gaps = 67/280 (23%)
Query: 117 IVGGLAANPGEFPWIV--------SLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSA 168
I+GG A P P++ SLKR CGG +I + +++TAAHC
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKR-----CGGFLIRDDFVLTAAHCW--------G 47
Query: 169 SQINVTLKEHDLSR--PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPA 226
S INVTL H++ P+ +PV R + HP+++ +F+NDI LL+L R + + ++P
Sbjct: 48 SSINVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPL 107
Query: 227 CLPSGSLDYSE-QSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKI 285
LPS Q+ +VAGWG T G+ S+ LQ+V ++V ++ C +S+ +
Sbjct: 108 RLPSNKAQVKPGQTCSVAGWGQTA---PLGKHSHTLQEVKMTVQEDRKC----ESDLRHY 160
Query: 286 NVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLL 345
++C G + K + + DSGGPL+
Sbjct: 161 YDSTIELCVGDPEIKKTS------------------------------FKGDSGGPLVC- 189
Query: 346 GAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+ G+VS G P P T+++ ++ WI T+
Sbjct: 190 ---NKVAQGIVSYGRNNGMP--PRACTKVSSFVHWIKKTM 224
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLM 58
+ S+ LQ+V ++V ++ C+ S+ + ++C G + K + DSGGPL+
Sbjct: 135 KHSHTLQEVKMTVQEDRKCE----SDLRHYYDSTIELCVGDPEIKKTSFKGDSGGPLV 188
>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin
Length = 223
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 121/268 (45%), Gaps = 53/268 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
+VGG A GEFP++V L CGG + + ++TAAHC+ + S I T
Sbjct: 1 VVGGTRAAQGEFPFMVRLSMG----CGGALYAQDIVLTAAHCVSGSGNNTS---ITATGG 53
Query: 177 EHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDYS 236
DL S V +++ P ++ + D AL++L + I +P + + Y+
Sbjct: 54 VVDLQSSSAVKVRSTKVLQAPGYNGT--GKDWALIKLAQPIN-----QPTLKIATTTAYN 106
Query: 237 EQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH 296
+ + TVAGWG E SQ R L K + VS+ C++ Y +E V ++CAG+
Sbjct: 107 QGTFTVAGWGANREGGSQQR---YLLKANVPFVSDAACRSAYGNE----LVANEEICAGY 159
Query: 297 -EQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLL-GAESTQVIG 354
+ GG D C Q DSGGP+ A+ +G
Sbjct: 160 PDTGGVDTC------------------------------QGDSGGPMFRKDNADEWIQVG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWIS 382
+VS G GCARP PG+YT ++ + I+
Sbjct: 190 IVSWGYGCARPGYPGVYTEVSTFASAIA 217
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH-EQGGKDACWADSGGPLMLL-GAE 63
L K + VS+ C++ Y +E V ++CAG+ + GG D C DSGGP+ A+
Sbjct: 128 LLKANVPFVSDAACRSAYGNE----LVANEEICAGYPDTGGVDTCQGDSGGPMFRKDNAD 183
Query: 64 STQVIGLVSTGIG 76
+G+VS G G
Sbjct: 184 EWIQVGIVSWGYG 196
>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal
Synthesized Substrate
Length = 240
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 89/161 (55%), Gaps = 11/161 (6%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
I+GG P P++ SL+R+G H CGG ++H +W++TAAHCL +Q+ + L
Sbjct: 1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQ-----RMAQLRLVLG 55
Query: 177 EHDLSRPSISTVPVLRIMFHPSHS-CSSFNNDIALLELTRSIQWSDLIRPACLPSG-SLD 234
H L P + T + + HP + + N++ALL+L ++ S IRP LPS +
Sbjct: 56 LHTLDSPGL-TFHIKAAIQHPRYKPVPALENNLALLQLDGKVKPSRTIRPLALPSKRQVV 114
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQ 275
+ ++AGWG T++ GR S +L+++ L V+ ++C
Sbjct: 115 AAGTRCSMAGWGLTHQG---GRLSRVLRELDLQVLDTRMCN 152
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLM 58
R S +L+++ L V+ ++C G ++ S +C + + C DSGGPL+
Sbjct: 133 RLSRVLRELDLQVLDTRMCNNSRFWNG---SLSPSMVCLAADSKDQAPCKGDSGGPLV 187
>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|B Chain B, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|C Chain C, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
Length = 227
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 119/270 (44%), Gaps = 51/270 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
I+ G G PW V+L CGG +++E+W++TAAHC N + V L
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMN--------EYTVHLG 52
Query: 177 EHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDYS 236
L + + HP +S + ND+ L++L + S +++ LPS +
Sbjct: 53 SDTLGDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPS-RCEPP 111
Query: 237 EQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH 296
+ TV+GWG T +P S+++ V + ++S Q C Y+ ++ S +CAG
Sbjct: 112 GTTCTVSGWG-TTTSPDVTFPSDLMC-VDVKLISPQDCTKVYKDL-----LENSMLCAGI 164
Query: 297 EQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGLV 356
K+AC DSGGPL+ G + GLV
Sbjct: 165 PDSKKNAC------------------------------NGDSGGPLVCRGT----LQGLV 190
Query: 357 STG-IGCARPRLPGLYTRLTRYIGWISDTL 385
S G C +P PG+YT++ ++ WI+DT+
Sbjct: 191 SWGTFPCGQPNDPGVYTQVCKFTKWINDTM 220
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
L V + ++S Q C Y+ ++ S +CAG K+AC DSGGPL+ G
Sbjct: 134 LMCVDVKLISPQDCTKVYKDL-----LENSMLCAGIPDSKKNACNGDSGGPLVCRGT--- 185
Query: 66 QVIGLVSTG 74
+ GLVS G
Sbjct: 186 -LQGLVSWG 193
>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With
Benzamidine
Length = 223
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 121/268 (45%), Gaps = 53/268 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
+VGG A GEFP++V L CGG + + ++TAAHC+ + S I T
Sbjct: 1 VVGGTRAAQGEFPFMVRLSMG----CGGALYAQDIVLTAAHCVSGSGNNTS---ITATGG 53
Query: 177 EHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDYS 236
DL S V +++ P ++ + D AL++L + I +P + + Y+
Sbjct: 54 VVDLQSSSAVKVRSTKVLQAPGYNGT--GKDWALIKLAQPIN-----QPTLKIATTTAYN 106
Query: 237 EQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH 296
+ + TVAGWG E SQ R L K + VS+ C++ Y +E V ++CAG+
Sbjct: 107 QGTFTVAGWGANREGGSQQR---YLLKANVPFVSDAACRSAYGNE----LVANEEICAGY 159
Query: 297 -EQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLL-GAESTQVIG 354
+ GG D C Q DSGGP+ A+ +G
Sbjct: 160 PDTGGVDPC------------------------------QGDSGGPMFRKDNADEWIQVG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWIS 382
+VS G GCARP PG+YT ++ + I+
Sbjct: 190 IVSWGYGCARPGYPGVYTEVSTFASAIA 217
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH-EQGGKDACWADSGGPLMLL-GAE 63
L K + VS+ C++ Y +E V ++CAG+ + GG D C DSGGP+ A+
Sbjct: 128 LLKANVPFVSDAACRSAYGNE----LVANEEICAGYPDTGGVDPCQGDSGGPMFRKDNAD 183
Query: 64 STQVIGLVSTGIG 76
+G+VS G G
Sbjct: 184 EWIQVGIVSWGYG 196
>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To
Inhibitor Eglin C From Hirudo Medicinalis
Length = 249
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 131/282 (46%), Gaps = 54/282 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGG----HFCGGTIIHEQWIVTAAHCLCNGPS-PLSASQI 171
+VGG A P +PW +SL+ H CGGT+I +++TAAHC+ N + ++ +
Sbjct: 1 VVGGEDARPHSWPWQISLQYLKNDTWRHTCGGTLIASNFVLTAAHCISNTRTYRVAVGKN 60
Query: 172 NVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS- 230
N+ +++ + S V V I H + NDIAL++L ++ SD I+ ACLP
Sbjct: 61 NLEVEDEEGSL----FVGVDTIHVHKRWNALLLRNDIALIKLAEHVELSDTIQVACLPEK 116
Query: 231 GSLDYSEQSVTVAGWG--WTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVK 288
SL + V GWG WTN G ++ LQ+ VV + C + + VK
Sbjct: 117 DSLLPKDYPCYVTGWGRLWTN-----GPIADKLQQGLQPVVDHATCS---RIDWWGFRVK 168
Query: 289 ESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLML-LGA 347
++ +CAG + G AC DSGGPL L
Sbjct: 169 KTMVCAGGD-GVISAC------------------------------NGDSGGPLNCQLEN 197
Query: 348 ESTQVIGLVSTGI--GCARPRLPGLYTRLTRYIGWISDTLDI 387
S +V G+VS G GC + P +YTR++ YI WI++ + +
Sbjct: 198 GSWEVFGIVSFGSRRGCNTRKKPVVYTRVSAYIDWINEKMQL 239
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 30 INVKESQMCAGHEQGGKDACWADSGGPLML-LGAESTQVIGLVSTG 74
VK++ +CAG + G AC DSGGPL L S +V G+VS G
Sbjct: 165 FRVKKTMVCAGGD-GVISACNGDSGGPLNCQLENGSWEVFGIVSFG 209
>pdb|1HAX|B Chain B, Snapshots Of Serine Protease Catalysis: (A) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 At Ph 5
pdb|1HAY|B Chain B, Snapshots Of Serine Protease Catalysis: (B) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 Jumped To Ph 10 For 10 Seconds
pdb|1HB0|B Chain B, Snapshots Of Serine Protease Catalysis: (D) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 Jumped To Ph 10 For 2 Minutes
Length = 240
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 128/280 (45%), Gaps = 54/280 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSPLSASQIN 172
+VGG A +P +SL+ G H CGGT+I + W++TAAHC+ L+
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCV---DRELT---FR 54
Query: 173 VTLKEHDLSRPSIST--VPVLRIMFHPSHSCSSF--NNDIALLELTRSIQWSDLIRPACL 228
V + EH+L++ + + V V +I+ HP + DIALL L +S+ + ++ L
Sbjct: 55 VVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVL 114
Query: 229 P-SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINV 287
P +G++ + + GWG T N G+ + LQ+ L V +C + S V
Sbjct: 115 PRAGTILRNNSPCYITGWGLTRTN---GQLAQTLQQAYLPTVDYAICSS---SSYWGSTV 168
Query: 288 KESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGA 347
K S +CAG + G + C Q DSGGPL L
Sbjct: 169 KNSMVCAGGD-GVRSGC------------------------------QGDSGGPLHCLVN 197
Query: 348 ESTQVIGLVS--TGIGCARPRLPGLYTRLTRYIGWISDTL 385
V G+ S + +GC R P ++TR++ YI WI++ +
Sbjct: 198 GQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
LQ+ L V +C + S VK S +CAG + G + C DSGGPL L
Sbjct: 145 LQQAYLPTVDYAICSS---SSYWGSTVKNSMVCAGGD-GVRSGCQGDSGGPLHCLVNGQY 200
Query: 66 QVIGLVS 72
V G+ S
Sbjct: 201 AVHGVTS 207
>pdb|2EST|E Chain E, Crystallographic Study Of The Binding Of A Trifluoroacetyl
Dipeptide Anilide Inhibitor With Elastase
pdb|4EST|E Chain E, Crystal Structure Of The Covalent Complex Formed By A
Peptidyl Alpha, Alpha-Difluoro-Beta-Keto Amide With
Porcine Pancreatic Elastase At 1.78-Angstroms Resolution
pdb|5EST|E Chain E, Crystallographic Analysis Of The Inhibition Of Porcine
Pancreatic Elastase By A Peptidyl Boronic Acid:
Structure Of A Reaction Intermediate
pdb|7EST|E Chain E, Interaction Of The Peptide Cf3-Leu-Ala-Nh-C6h4-Cf3(Tfla)
With Porcine Pancreatic Elastase. X-Ray Studies At 1.8
Angstroms
pdb|8EST|E Chain E, Reaction Of Porcine Pancreatic Elastase With 7-substituted
3-alkoxy-4-chloroisocoumarins: Design Of Potent
Inhibitors Using The Crystal Structure Of The Complex
Formed With 4- Chloro-3-ethoxy-7-guanidino-isocoumarin
pdb|1ELA|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELC|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELB|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELD|E Chain E, Structural Analysis Of The Active Site Of Porcine
Pancreatic Elastase Based On The X-Ray Crystal
Structures Of Complexes With
Trifluoroacetyl-Dipeptide-Anilide Inhibitors
pdb|1ELE|E Chain E, Structural Analysis Of The Active Site Of Porcine
Pancreatic Elastase Based On The X-Ray Crystal
Structures Of Complexes With
Trifluoroacetyl-Dipeptide-Anilide Inhibitors
pdb|1NES|E Chain E, Structure Of The Product Complex Of Acetyl-ala-pro-ala
With Porcine Pancreatic Elastase At 1.65 Angstroms
Resolution
pdb|1BMA|A Chain A, Benzyl Methyl Aminimide Inhibitor Complexed To Porcine
Pancreatic Elastase
pdb|1FLE|E Chain E, Crystal Structure Of Elafin Complexed With Porcine
Pancreatic Elastase
pdb|1B0E|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase With Mdl
101,146
pdb|1QGF|A Chain A, Porcine Pancreatic Elastase Complexed With (3r, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic
Acid)pyrrolidin-2- One
pdb|1QIX|B Chain B, Porcine Pancreatic Elastase Complexed With Human
Beta-casomorphin-7
pdb|1QR3|E Chain E, Structure Of Porcine Pancreatic Elastase In Complex With
Fr901277, A Novel Macrocyclic Inhibitor Of Elastases At
1.6 Angstrom Resolution
pdb|1E34|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2- One Soaked In Ph 9 Buffer For One Minute
pdb|1E35|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic
Acid)pyrrolidin-2- One Soaked In Ph 9 Buffer For Two
Minutes
pdb|1E36|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One
pdb|1E37|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One Soaked In Ph 9 Buffer For 1 Minute
pdb|1E38|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One Soaked In Ph 9 Buffer For 2 Minutes
pdb|1HAZ|B Chain B, Snapshots Of Serine Protease Catalysis: (c) Acyl-enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-casomorphin-7 Jumped To Ph 9 For 1 Minute
pdb|1H9L|B Chain B, Porcine Pancreatic Elastase Complexed With
Acetyl-Val-Glu-Pro-Ile-Cooh
pdb|1OKX|A Chain A, Binding Structure Of Elastase Inhibitor Scyptolin A
pdb|1OKX|B Chain B, Binding Structure Of Elastase Inhibitor Scyptolin A
pdb|2FO9|A Chain A, Structure Of Porcine Pancreatic Elastase In 95% Acetone
pdb|2FOA|A Chain A, Structure Of Porcine Pancreatic Elastase In 405010 %
BENZENE
pdb|2FOB|A Chain A, Structure Of Porcine Pancreatic Elastase In 405010
CYCLOHEXANE
pdb|2FOC|A Chain A, Structure Of Porcine Pancreatic Elastase In 55%
Dimethylformamide
pdb|2FOD|A Chain A, Structure Of Porcine Pancreatic Elastase In 80% Ethanol
pdb|2FOE|A Chain A, Structure Of Porcine Pancreatic Elastase In 80% Hexane
pdb|2FOF|A Chain A, Structure Of Porcine Pancreatic Elastase In 80%
Isopropanol
pdb|2FOG|A Chain A, Structure Of Porcine Pancreatic Elastase In 40%
Trifluoroethanol
pdb|2FOH|A Chain A, Structure Of Porcine Pancreatic Elastase In 40%
Trifluoroethanol
pdb|2BD4|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin- 7 And Lys-Ser At Ph 5.0
pdb|2BD5|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Lys- Ser At Ph 5 And Immersed In
Ph 9 Buffer For 30 Seconds
pdb|2BD9|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
And Immersed In Ph 9 Buffer For 28 Seconds (2nd Ph Jump)
pdb|2BDC|A Chain A, Porcine Pancreatic Elastase Complexed With Asn-pro-ile At
Ph 5.0
pdb|2H1U|A Chain A, Porcine Pancreatic Elastase Complexed With Metpheleuglu At
Ph 5.0
pdb|1BTU|A Chain A, Porcine Pancreatic Elastase Complexed With (3s, 4r)-1-
Toluenesulphonyl-3-Ethyl-Azetidin-2-One-4-Carboxylic
Acid
pdb|1EAS|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 3.
Design, Synthesis, X-Ray Crystallographic Analysis, And
Structure-Activity Relationships For A Series Of Orally
Active 3-Amino-6-Phenylpyridin- 2-One Trifluoromethyl
Ketones
pdb|1EAT|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 5.
Design, Synthesis, And X-Ray Crystallography Of A Series
Of Orally Active 5- Amino-Pyrimidin-6-One-Containing
Trifluoromethylketones
pdb|1EAU|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 6.
Design Of A Potent, Intratracheally Active,
Pyridone-Based Trifluoromethyl Ketone
pdb|1ELF|A Chain A, Nature Of The Inactivation Of Elastase By N-Peptidyl-O-
Aroyl Hydroxylamine As A Function Of Ph
pdb|1ELG|A Chain A, Nature Of The Inactivation Of Elastase By N-Peptidyl-O-
Aroyl Hydroxylamine As A Function Of Ph
pdb|1ESA|A Chain A, Direct Structure Observation Of An Acyl-Enzyme
Intermediate In The Hydrolysis Of An Ester Substrate By
Elastase
pdb|1EST|A Chain A, The Atomic Structure Of Crystalline Porcine Pancreatic
Elastase At 2.5 Angstroms Resolution. Comparisons With
The Structure Of Alpha- Chymotrypsin
pdb|1INC|A Chain A, Crystal Structures Of The Complex Of Porcine Pancreatic
Elastase With Two Valine-Derived Benzoxazinone
Inhibitors
pdb|1JIM|A Chain A, Stereospecific Reaction Of 3-Methoxy-4-Chloro-7-
Aminoisocoumarin With Crystalline Porcine Pancreatic
Elastase
pdb|1LVY|A Chain A, Porcine Elastase
pdb|3EST|A Chain A, Structure Of Native Porcine Pancreatic Elastase At 1.65
Angstroms Resolution
pdb|6EST|A Chain A, Interaction Of The Peptide Cf3-Leu-Ala-Nh-C6h4-Cf3(Tfla)
With Porcine Pancreatic Elastase. X-Ray Studies At 1.8
Angstroms
pdb|9EST|A Chain A, Structural Study Of Porcine Pancreatic Elastase Complexed
With 7- Amino-3-(2-Bromoethoxy)-4-Chloroisocoumarin As A
Nonreactivatable Doubly Covalent Enzyme-Inhibitor
Complex
pdb|1GVK|B Chain B, Porcine Pancreatic Elastase Acyl Enzyme At 0.95 A
Resolution
pdb|3E3T|A Chain A, Structure Of Porcine Pancreatic Elastase With The Magic
Triangle I3c
pdb|3MNB|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. First Stage Of
Radiation Damage
pdb|3MNC|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Second Stage Of
Radiation Damage
pdb|3MNS|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Third Stage Of
Radiation Damage
pdb|3MNX|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Fourth Stage Of
Radiation Damage
pdb|3MO3|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Fifth Stage Of
Radiation Damage
pdb|3MO6|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Sixth Stage Of
Radiation Damage
pdb|3MO9|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Seventh Stage Of
Radiation Damage
pdb|3MOC|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Eighth Stage Of
Radiation Damage
pdb|3MTY|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. First Step Of Radiation
Damage
pdb|3MU0|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Third Step Of Radiation
Damage
pdb|3MU1|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Fifth Step Of Radiation
Damage
pdb|3MU4|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. First Step Of Radiation
Damage
pdb|3MU5|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Third Step Of Radiation
Damage
pdb|3MU8|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Fifth Step Of Radiation
Damage
pdb|3ODD|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Second Step Of Radiation
Damage
pdb|3ODF|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Second Step Of Radiation
Damage
pdb|2BB4|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Asp- Phe At Ph 5.0
pdb|2BD2|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Arg- Phe At Ph 5.0
pdb|2BD3|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Lys- Ala-nh2 At Ph 5.0
pdb|2BD7|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
pdb|2BD8|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
And Immersed In Ph 9 Buffer For 30 Seconds
pdb|2BDA|A Chain A, Porcine Pancreatic Elastase Complexed With N-Acetyl-Npi
And Ala-Ala At Ph 5.0
pdb|2BDB|A Chain A, Porcine Pancreatic Elastase Complexed With Asn-pro-ile And
Ala-ala At Ph 5.0
pdb|1ESB|A Chain A, Direct Structure Observation Of An Acyl-Enzyme
Intermediate In The Hydrolysis Of An Ester Substrate By
Elastase
pdb|4GVU|A Chain A, Lyngbyastatin 7-porcine Pancreatic Elastase Co-crystal
Structure
Length = 240
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 128/280 (45%), Gaps = 54/280 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSPLSASQIN 172
+VGG A +P +SL+ G H CGGT+I + W++TAAHC+ L+
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCV---DRELT---FR 54
Query: 173 VTLKEHDLSRPSIST--VPVLRIMFHPSHSCSSF--NNDIALLELTRSIQWSDLIRPACL 228
V + EH+L++ + + V V +I+ HP + DIALL L +S+ + ++ L
Sbjct: 55 VVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVL 114
Query: 229 P-SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINV 287
P +G++ + + GWG T N G+ + LQ+ L V +C + S V
Sbjct: 115 PRAGTILANNSPCYITGWGLTRTN---GQLAQTLQQAYLPTVDYAICSS---SSYWGSTV 168
Query: 288 KESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGA 347
K S +CAG + G + C Q DSGGPL L
Sbjct: 169 KNSMVCAGGD-GVRSGC------------------------------QGDSGGPLHCLVN 197
Query: 348 ESTQVIGLVS--TGIGCARPRLPGLYTRLTRYIGWISDTL 385
V G+ S + +GC R P ++TR++ YI WI++ +
Sbjct: 198 GQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
LQ+ L V +C + S VK S +CAG + G + C DSGGPL L
Sbjct: 145 LQQAYLPTVDYAICSS---SSYWGSTVKNSMVCAGGD-GVRSGCQGDSGGPLHCLVNGQY 200
Query: 66 QVIGLVS 72
V G+ S
Sbjct: 201 AVHGVTS 207
>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
pdb|2XXL|B Chain B, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
Length = 408
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 132/312 (42%), Gaps = 81/312 (25%)
Query: 105 CGRSLASRRTGKIVGGLAANPGEFPWIVSLKRH----GGHFCGGTIIHEQWIVTAAHCLC 160
CG L+ R + G PW+ L+ CGG +I E++I+TAAHC+
Sbjct: 111 CGNFLSQR----VSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCV- 165
Query: 161 NGPSPLSASQINVTLKEHDLSR--------------PSISTVPVLRIMFHPSHSCSSFNN 206
L + L EH +S P + V + + + H + +
Sbjct: 166 ---HGLQNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMH 222
Query: 207 DIALLELTRSIQWSDLIRPACLP-SGSLDYSEQSVT---VAGWGWTNENPSQGRRSNILQ 262
DIALL+L RS+ + I+P CLP + L + ++ V GWG T EN G S++L
Sbjct: 223 DIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWG-TTEN---GSSSDVLL 278
Query: 263 KVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGG--KDACWVSRQWWTPHVARGRV 320
+ + + C Y+ V SQ+C G GG +D+C
Sbjct: 279 QANVPLQPRSACSQAYRRA-----VPLSQLCVG---GGDLQDSC---------------- 314
Query: 321 YPSHRSGVHWDPPLQADSGGPL----MLLGAESTQVI--GLVSTG-IGCARPRLPGLYTR 373
+ DSGGPL LG + +++ G+VS G + C + LPGLYT
Sbjct: 315 --------------KGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTN 360
Query: 374 LTRYIGWISDTL 385
+ Y+ WI+DT+
Sbjct: 361 VGEYVQWITDTM 372
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query: 25 SEGKKINVKESQMCAGHEQGG--KDACWADSGGPL----MLLGAESTQVI--GLVSTGI 75
S+ + V SQ+C G GG +D+C DSGGPL LG + +++ G+VS G+
Sbjct: 291 SQAYRRAVPLSQLCVG---GGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGV 346
>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
pdb|1BDA|B Chain B, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 127/302 (42%), Gaps = 61/302 (20%)
Query: 105 CGRSLASRRTGKIVGGLAANPGEFPWIVSL----KRHGGH--FCGGTIIHEQWIVTAAHC 158
CG S+ +I GGL A+ PW ++ +R G CGG +I WI++AAHC
Sbjct: 2 CGLRQYSQPQFRIKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHC 61
Query: 159 LCNGPSPLSASQINVTLKEHDLSRP--SISTVPVLRIMFHPSHSCSSFNNDIALLEL--- 213
P + V L P V + + H +++NDIALL+L
Sbjct: 62 FQERFPP---HHLTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSD 118
Query: 214 -TRSIQWSDLIRPACLPSGSL---DYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVV 269
+R Q S ++R CLP L D++E ++ G+ S L++ + +
Sbjct: 119 SSRCAQESSVVRTVCLPPADLQLPDWTECELS----GYGKHEALSPFYSERLKEAHVRLY 174
Query: 270 SNQVCQAWYQSEGKKINVKESQMCAGHEQGG------KDACWVSRQWWTPHVARGRVYPS 323
+ C + + V ++ +CAG + G DAC
Sbjct: 175 PSSRCTSQHLLNR---TVTDNMLCAGDTRSGGPQANLHDAC------------------- 212
Query: 324 HRSGVHWDPPLQADSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISD 383
Q DSGGPL+ L ++G++S G+GC + +PG+YT++T Y+ WI D
Sbjct: 213 -----------QGDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRD 261
Query: 384 TL 385
+
Sbjct: 262 NM 263
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 31 NVKESQMCAGHEQGG------KDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
V ++ +CAG + G DAC DSGGPL+ L ++G++S G+G
Sbjct: 188 TVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLG 239
>pdb|1EAI|A Chain A, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
pdb|1EAI|B Chain B, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
pdb|1C1M|A Chain A, Porcine Elastase Under Xenon Pressure (8 Bar)
pdb|1HV7|A Chain A, Porcine Pancreatic Elastase Complexed With Gw311616a
pdb|1FZZ|A Chain A, The Crystal Structure Of The Complex Of Non-Peptidic
Inhibitor Ono-6818 And Porcine Pancreatic Elastase.
pdb|1GWA|A Chain A, Triiodide Derivative Of Porcine Pancreas Elastase
pdb|1L0Z|A Chain A, The Structure Of Porcine Pancreatic Elastase Complexed
With Xenon And Bromide, Cryoprotected With Dry Paraffin
Oil
pdb|1L1G|A Chain A, The Structure Of Porcine Pancreatic Elastase Complexed
With Xenon And Bromide, Cryoprotected With Glycerol
pdb|1LKA|A Chain A, Porcine Pancreatic ElastaseCA-Complex
pdb|1LKB|A Chain A, Porcine Pancreatic Elastase/na-complex
pdb|1MMJ|N Chain N, Porcine Pancreatic Elastase Complexed With A Potent
Peptidyl Inhibitor, Fr136706
pdb|1MCV|A Chain A, Crystal Structure Analysis Of A Hybrid Squash Inhibitor In
Complex With Porcine Pancreatic Elastase
pdb|1UO6|A Chain A, Porcine Pancreatic ElastaseXE-Complex
pdb|1UVO|A Chain A, Structure Of The Complex Of Porcine Pancreatic Elastase In
Complex With Cadmium Refined At 1.85 A Resolution
(crystal A)
pdb|1UVP|A Chain A, Structure Of The Complex Of Porcine Pancreatic Elastase In
Complex With Cadmium Refined At 1.85 A Resolution
(Crystal B)
pdb|2A7C|A Chain A, On The Routine Use Of Soft X-rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2A7J|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2BLO|A Chain A, Elastase Before A High Dose X-Ray "burn"
pdb|2BLQ|A Chain A, Elastase After A High Dose X-Ray "burn"
pdb|2D26|C Chain C, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
pdb|2CV3|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase Complexed
With A Macroclyclic Peptide Inhibitor
pdb|2DE8|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase With A
Unique Conformation Induced By Tris
pdb|2DE9|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase Complexed
With Tris After Soaking A Tris-Free Solution
pdb|2G4T|A Chain A, Anomalous Substructure Of Porcine Pancreatic Elastase (na)
pdb|2G4U|A Chain A, Anomalous Substructure Of Porcine Pancreatic Elastaase
(ca)
pdb|2OQU|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1QNJ|A Chain A, The Structure Of Native Porcine Pancreatic Elastase At
Atomic Resolution (1.1 A)
pdb|2IOT|A Chain A, Clavulanic Acid Bound To Elastase
pdb|2V0B|A Chain A, Sad Structure Solution Porcine Pancreatic Elastase From A
Selenate Derivative
pdb|2V35|A Chain A, Porcine Pancreatic Elastase In Complex With Inhibitor Jm54
pdb|3HGP|A Chain A, Structure Of Porcine Pancreatic Elastase Complexed With A
Potent Peptidyl Inhibitor Fr130180 Determined By High
Resolution Crystallography
pdb|3HGN|A Chain A, Structure Of Porcine Pancreatic Elastase Complexed With A
Potent Peptidyl Inhibitor Fr130180 Determined By Neutron
Crystallography
pdb|3UOU|A Chain A, Crystal Structure Of The Kunitz-Type Protease Inhibitor
Shpi-1 Lys13leu Mutant In Complex With Pancreatic
Elastase
Length = 240
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 127/280 (45%), Gaps = 54/280 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSPLSASQIN 172
+VGG A +P +SL+ G H CGGT+I + W++TAAHC+ L+
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCV---DRELT---FR 54
Query: 173 VTLKEHDLSRP--SISTVPVLRIMFHPSHSCSSF--NNDIALLELTRSIQWSDLIRPACL 228
V + EH+L++ + V V +I+ HP + DIALL L +S+ + ++ L
Sbjct: 55 VVVGEHNLNQNDGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVL 114
Query: 229 P-SGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINV 287
P +G++ + + GWG T N G+ + LQ+ L V +C + S V
Sbjct: 115 PRAGTILANNSPCYITGWGLTRTN---GQLAQTLQQAYLPTVDYAICSS---SSYWGSTV 168
Query: 288 KESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGA 347
K S +CAG + G + C Q DSGGPL L
Sbjct: 169 KNSMVCAGGD-GVRSGC------------------------------QGDSGGPLHCLVN 197
Query: 348 ESTQVIGLVS--TGIGCARPRLPGLYTRLTRYIGWISDTL 385
V G+ S + +GC R P ++TR++ YI WI++ +
Sbjct: 198 GQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
LQ+ L V +C + S VK S +CAG + G + C DSGGPL L
Sbjct: 145 LQQAYLPTVDYAICSS---SSYWGSTVKNSMVCAGGD-GVRSGCQGDSGGPLHCLVNGQY 200
Query: 66 QVIGLVS 72
V G+ S
Sbjct: 201 AVHGVTS 207
>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin
At 1.7 Angstroms Resolution
Length = 223
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 121/268 (45%), Gaps = 53/268 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
+VGG A GEFP++V L CGG + + ++TAAHC+ + S I T
Sbjct: 1 VVGGTRAAQGEFPFMVRLSMG----CGGALYAQDIVLTAAHCVSGSGNNTS---ITATGG 53
Query: 177 EHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDYS 236
DL + V +++ P ++ + D AL++L + I +P + + Y+
Sbjct: 54 VVDLQSGAAVKVRSTKVLQAPGYNGT--GKDWALIKLAQPIN-----QPTLKIATTTAYN 106
Query: 237 EQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH 296
+ + TVAGWG E SQ R L K + VS+ C++ Y +E V ++CAG+
Sbjct: 107 QGTFTVAGWGANREGGSQQR---YLLKANVPFVSDAACRSAYGNE----LVANEEICAGY 159
Query: 297 -EQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLL-GAESTQVIG 354
+ GG D C Q DSGGP+ A+ +G
Sbjct: 160 PDTGGVDTC------------------------------QGDSGGPMFRKDNADEWIQVG 189
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWIS 382
+VS G GCARP PG+YT ++ + I+
Sbjct: 190 IVSWGYGCARPGYPGVYTEVSTFASAIA 217
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH-EQGGKDACWADSGGPLMLL-GAE 63
L K + VS+ C++ Y +E V ++CAG+ + GG D C DSGGP+ A+
Sbjct: 128 LLKANVPFVSDAACRSAYGNE----LVANEEICAGYPDTGGVDTCQGDSGGPMFRKDNAD 183
Query: 64 STQVIGLVSTGIG 76
+G+VS G G
Sbjct: 184 EWIQVGIVSWGYG 196
>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt
Length = 229
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 116/268 (43%), Gaps = 47/268 (17%)
Query: 117 IVGGLAANPGEFPWIVSL-KRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
+VGG A GEFP++V L FCGG + + ++TAAHC+ + S I T
Sbjct: 1 VVGGTRAAQGEFPFMVRLINEENEGFCGGALYAQDIVLTAAHCVSGSGNNTS---ITATG 57
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
DL S V +++ P + ++ D AL++L + I +P + + Y
Sbjct: 58 GVVDLQSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPIN-----QPTLKIATTTAY 112
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
++ + TVAGWG E SQ R L K + VS+ C +S I V +CAG
Sbjct: 113 NQGTFTVAGWGANREGGSQQR---YLLKANVPFVSDAAC----RSSSSFILVANEMICAG 165
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLL-GAESTQVIG 354
++ +D C Q DSGGP+ A+ +G
Sbjct: 166 YDTKQEDTC------------------------------QGDSGGPMFRKDNADEWVQVG 195
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWIS 382
+VS G GCAR G+YT ++ + I+
Sbjct: 196 IVSWGEGCARKGKYGVYTEVSTFASAIA 223
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLM 58
L K + VS+ C+ S I V +CAG++ +D C DSGGP+
Sbjct: 135 LLKANVPFVSDAACR----SSSSFILVANEMICAGYDTKQEDTCQGDSGGPMF 183
>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin
Length = 222
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 119/267 (44%), Gaps = 52/267 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
+VGG A GEFP++V L CGG + + ++TAAHC+ + S I T
Sbjct: 1 VVGGTRAAQGEFPFMVRLSMG----CGGALYAQDIVLTAAHCVSGSGNNTS---ITATGG 53
Query: 177 EHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDYS 236
DL S V +++ P ++ + D AL++L + I +P + + Y+
Sbjct: 54 VVDLQSSSAVKVRSTKVLQAPGYNGT--GKDWALIKLAQPIN-----QPTLKIATTTAYN 106
Query: 237 EQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH 296
+ + TVAGWG E SQ R L K + VS+ C++ Y +E V ++CAG+
Sbjct: 107 QGTFTVAGWGANREGGSQQR---YLLKANVPFVSDAACRSAYGNE----LVANEEICAGY 159
Query: 297 EQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLL-GAESTQVIGL 355
+ GG D C Q DSGGP+ A+ +G+
Sbjct: 160 DTGGVDTC------------------------------QGDSGGPMFRKDNADEWIQVGI 189
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWIS 382
VS G GCAR G+YT ++ + I+
Sbjct: 190 VSWGEGCARKGKYGVYTEVSTFASAIA 216
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLM 58
L K + VS+ C++ Y +E V ++CAG++ GG D C DSGGP+
Sbjct: 128 LLKANVPFVSDAACRSAYGNE----LVANEEICAGYDTGGVDTCQGDSGGPMF 176
>pdb|1SI5|H Chain H, Protease-Like Domain From 2-Chain Hepatocyte Growth Factor
Length = 240
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 110/261 (42%), Gaps = 52/261 (19%)
Query: 130 WIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLKEHDL----SRPSI 185
W+VSL+ H CGG++I E W++TA C PS L HD+
Sbjct: 13 WMVSLRYRNKHICGGSLIKESWVLTARQCF---PS-RDLKDYEAWLGIHDVHGRGDEKCK 68
Query: 186 STVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS-GSLDYSEQSVTVAG 244
+ V ++++ P S D+ L++L R D + LP+ GS + S +V G
Sbjct: 69 QVLNVSQLVYGPEGS------DLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYG 122
Query: 245 WGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDAC 304
WG+T G +L+ L ++ N+ C Q K+ + ES++CAG E+ G C
Sbjct: 123 WGYTGLINYDG----LLRVAHLYIMGNEKCS---QHHRGKVTLNESEICAGAEKIGSGPC 175
Query: 305 WVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGLVSTGIGCAR 364
+ D GGPL+ + V+G++ G GCA
Sbjct: 176 ------------------------------EGDYGGPLVCEQHKMRMVLGVIVPGRGCAI 205
Query: 365 PRLPGLYTRLTRYIGWISDTL 385
P PG++ R+ Y WI +
Sbjct: 206 PNRPGIFVRVAYYAKWIHKII 226
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 5 ILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES 64
+L+ L ++ N+ C Q K+ + ES++CAG E+ G C D GGPL+ +
Sbjct: 134 LLRVAHLYIMGNEKCS---QHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKM 190
Query: 65 TQVIGLVSTGIG 76
V+G++ G G
Sbjct: 191 RMVLGVIVPGRG 202
>pdb|1SHY|A Chain A, The Crystal Structure Of Hgf Beta-Chain In Complex With
The Sema Domain Of The Met Receptor
Length = 234
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 110/261 (42%), Gaps = 52/261 (19%)
Query: 130 WIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLKEHDL----SRPSI 185
W+VSL+ H CGG++I E W++TA C PS L HD+
Sbjct: 13 WMVSLRYRNKHICGGSLIKESWVLTARQCF---PS-RDLKDYEAWLGIHDVHGRGDEKCK 68
Query: 186 STVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS-GSLDYSEQSVTVAG 244
+ V ++++ P S D+ L++L R D + LP+ GS + S +V G
Sbjct: 69 QVLNVSQLVYGPEGS------DLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYG 122
Query: 245 WGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDAC 304
WG+T G +L+ L ++ N+ C Q K+ + ES++CAG E+ G C
Sbjct: 123 WGYTGLINYDG----LLRVAHLYIMGNEKCS---QHHRGKVTLNESEICAGAEKIGSGPC 175
Query: 305 WVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGLVSTGIGCAR 364
+ D GGPL+ + V+G++ G GCA
Sbjct: 176 ------------------------------EGDYGGPLVCEQHKMRMVLGVIVPGRGCAI 205
Query: 365 PRLPGLYTRLTRYIGWISDTL 385
P PG++ R+ Y WI +
Sbjct: 206 PNRPGIFVRVAYYAKWIHKII 226
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 5 ILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES 64
+L+ L ++ N+ C Q K+ + ES++CAG E+ G C D GGPL+ +
Sbjct: 134 LLRVAHLYIMGNEKCS---QHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKM 190
Query: 65 TQVIGLVSTGIG 76
V+G++ G G
Sbjct: 191 RMVLGVIVPGRG 202
>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin
pdb|2PSY|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin And Zinc
Length = 227
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 125/274 (45%), Gaps = 56/274 (20%)
Query: 117 IVGGLAANPGEFPWIVSLK-RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
I+ G + PW +L R +CG ++H QW++TAAHC V L
Sbjct: 1 IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHC--------RKKVFRVRL 52
Query: 176 KEHDLSRPSISTVPVL---RIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGS 232
+ LS S + + + HP +S +ND+ L++L R I+ + +RP + S
Sbjct: 53 GHYSLSPVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINV-SSH 111
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
+ V+GWG T ++P Q +LQ + +SV+S + C+ Y + + ++
Sbjct: 112 CPSAGTKCLVSGWG-TTKSP-QVHFPKVLQCLNISVLSQKRCEDAYPRQ-----IDDTMF 164
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG ++ G+D+C Q DSGGP++ G+ +
Sbjct: 165 CAG-DKAGRDSC------------------------------QGDSGGPVVCNGS----L 189
Query: 353 IGLVSTG-IGCARPRLPGLYTRLTRYIGWISDTL 385
GLVS G CARP PG+YT L ++ WI +T+
Sbjct: 190 QGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETI 223
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
+LQ + +SV+S + C+ Y + + ++ CAG ++ G+D+C DSGGP++ G+
Sbjct: 136 KVLQCLNISVLSQKRCEDAYPRQ-----IDDTMFCAG-DKAGRDSCQGDSGGPVVCNGS- 188
Query: 64 STQVIGLVSTG 74
+ GLVS G
Sbjct: 189 ---LQGLVSWG 196
>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
pdb|1FON|B Chain B, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
Length = 240
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 129/280 (46%), Gaps = 58/280 (20%)
Query: 120 GLAANPGEFPWIVSLKRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
G A P + W VSL+ H CGG++I W+VTA HC+ ++ V L
Sbjct: 2 GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIS------TSRTYQVVL 55
Query: 176 KEHDLS--RPSISTVPVL--RIMFHP--SHSCSSFNNDIALLELTRSIQWSDLIRPACL- 228
E+D S S +P+ + HP + +C + NDIAL++L+RS Q D ++ A L
Sbjct: 56 GEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLP 115
Query: 229 PSGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVK 288
P+G + +E ++GWG + G + LQ+ L V + C W + I VK
Sbjct: 116 PAGDILPNEAPCYISGWG---RLYTGGPLPDKLQQALLPTVDYEHCSQW---DWWGITVK 169
Query: 289 ESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAE 348
++ +CAG + RSG + DSGGPL A+
Sbjct: 170 KTMVCAGGDT--------------------------RSGCN------GDSGGPLNCPAAD 197
Query: 349 -STQVIGLVS--TGIGCARPRLPGLYTRLTRYIGWISDTL 385
S QV G+ S + GC + P ++TR++ +I WI +T+
Sbjct: 198 GSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETI 237
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE-S 64
LQ+ L V + C W + I VK++ +CAG + + C DSGGPL A+ S
Sbjct: 145 LQQALLPTVDYEHCSQW---DWWGITVKKTMVCAGGDT--RSGCNGDSGGPLNCPAADGS 199
Query: 65 TQVIGLVS 72
QV G+ S
Sbjct: 200 WQVHGVTS 207
>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human
Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa]
pdb|1A5H|A Chain A, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
pdb|1A5H|B Chain B, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
Length = 252
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 122/290 (42%), Gaps = 61/290 (21%)
Query: 117 IVGGLAANPGEFPWIVSL----KRHGGH--FCGGTIIHEQWIVTAAHCLCNGPSPLSASQ 170
I GGL A+ PW ++ +R G CGG +I WI++AAHC P
Sbjct: 1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPP---HH 57
Query: 171 INVTLKEHDLSRP--SISTVPVLRIMFHPSHSCSSFNNDIALLEL----TRSIQWSDLIR 224
+ V L P V + + H +++NDIALL+L +R Q S ++R
Sbjct: 58 LTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVR 117
Query: 225 PACLPSGSL---DYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSE 281
CLP L D++E ++ G+ S L++ + + + C + +
Sbjct: 118 TVCLPPADLQLPDWTECELS----GYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLN 173
Query: 282 GKKINVKESQMCAGHEQGG------KDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQ 335
V ++ +CAG + G DAC Q
Sbjct: 174 R---TVTDNMLCAGDTRSGGPQANLHDAC------------------------------Q 200
Query: 336 ADSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
DSGGPL+ L ++G++S G+GC + +PG+YT++T Y+ WI D +
Sbjct: 201 GDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNM 250
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 31 NVKESQMCAGHEQGG------KDACWADSGGPLMLLGAESTQVIGLVSTGIG 76
V ++ +CAG + G DAC DSGGPL+ L ++G++S G+G
Sbjct: 175 TVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLG 226
>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 251
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 124/284 (43%), Gaps = 53/284 (18%)
Query: 114 TGKIVGGLAANPGEFPWIVSLKRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSPLSAS 169
+ ++VGG A P +PW +SL+ H CGGT+I ++TAAHC+ N +
Sbjct: 11 SARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISNTLT----- 65
Query: 170 QINVTLKEHDLSRPSIS---TVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPA 226
V L +++L + V V I H + NDIAL++L +++ D I+ A
Sbjct: 66 -YRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVA 124
Query: 227 CLPS-GSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKI 285
CLPS GSL + V GWG N G + LQ+ VV C Q +
Sbjct: 125 CLPSEGSLLPQDYPCFVTGWGRLYTN---GPIAAELQQGLQPVVDYATCS---QRDWWGT 178
Query: 286 NVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLL 345
VKE+ +CAG + G AC DSGGPL
Sbjct: 179 TVKETMVCAGGD-GVISAC------------------------------NGDSGGPLNCQ 207
Query: 346 GAESTQVIGLVS--TGIGCARPRLPGLYTRLTRYIGWISDTLDI 387
V G+VS +G+ C + P ++TR++ YI WI+ L +
Sbjct: 208 ADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKLQL 251
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 32 VKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTGIGSPTSVVQLLTRWT 89
VKE+ +CAG + G AC DSGGPL V G+VS G G + + T +T
Sbjct: 180 VKETMVCAGGD-GVISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSCNTFKKPTVFT 236
>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure
Solution And Refinement At 1.8 Angstroms Resolution
Length = 235
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 113/280 (40%), Gaps = 60/280 (21%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG PW V++ + CGG +I W++TAAHC N L N K
Sbjct: 1 IVGGYKCEKNSQPWQVAVINE--YLCGGVLIDPSWVITAAHCYSNNYQVLLGR--NNLFK 56
Query: 177 EHDLSR----------PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPA 226
+ ++ P + V P H S ND+ LL L+ + ++
Sbjct: 57 DEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHS---NDLMLLHLSEPADITGGVKVI 113
Query: 227 CLPSGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKIN 286
LP+ + T GW + NPS+ S+ LQ V + ++SN+ C Y K N
Sbjct: 114 DLPTKE---PKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETY-----KDN 165
Query: 287 VKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLG 346
V + +CAG +GGKD C DSGGPL+ G
Sbjct: 166 VTDVMLCAGEMEGGKDTC------------------------------AGDSGGPLICDG 195
Query: 347 AESTQVIGLVSTG-IGCARPRLPGLYTRLTRYIGWISDTL 385
+ G+ S G CA+P+ P +Y +L ++ WI +
Sbjct: 196 V----LQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVM 231
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
S+ LQ V + ++SN+ C Y K NV + +CAG +GGKD C DSGGPL+ G
Sbjct: 142 SHDLQCVNIHLLSNEKCIETY-----KDNVTDVMLCAGEMEGGKDTCAGDSGGPLICDGV 196
>pdb|1MTN|B Chain B, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|F Chain F, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|B Chain B, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|G Chain G, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|B Chain B, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|G Chain G, Bovine Chymotrypsin Complexed To Bpti
pdb|1AFQ|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|1VGC|B Chain B, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|2VGC|B Chain B, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|3VGC|B Chain B, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|B Chain B, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|B Chain B, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Alpha-Chymotrypsin
pdb|1GG6|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The Active
Site
pdb|1GGD|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|B Chain B, Crystal Structure Of A Complex Between Bovine Chymotrypsin
And Ecotin
pdb|1YPH|C Chain C, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|D Chain D, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|B Chain B, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|F Chain F, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|B Chain B, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|F Chain F, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|F Chain F, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|F Chain F, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|F Chain F, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|F Chain F, Crystal And Molecular Structures Of The Complex Of Alpha-
Chymotrypsin With Its Inhibitor Turkey Ovomucoid Third
Domain At 1.8 Angstroms Resolution
pdb|1GHA|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|F Chain F, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|F Chain F, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|F Chain F, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To pH
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|B Chain B, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|4CHA|F Chain F, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|5CHA|B Chain B, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|F Chain F, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|B Chain B, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|F Chain F, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|F Chain F, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin With
Its Own Autolysis Products
pdb|3BG4|B Chain B, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An Elastase-Specific
Inhibitor
pdb|1GCT|B Chain B, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct Of
Gamma- Chymotrypsin?
pdb|2GCT|B Chain B, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To Ph
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|B Chain B, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|B Chain B, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
pdb|3RU4|D Chain D, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 131
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 74/134 (55%), Gaps = 7/134 (5%)
Query: 117 IVGGLAANPGEFPWIVSLK-RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
IV G A PG +PW VSL+ + G HFCGG++I+E W+VTAAHC + A +
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTTSDVVVAGEF---- 56
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
+ S I + + ++ + ++ + NNDI LL+L+ + +S + CLPS S D+
Sbjct: 57 -DQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDF 115
Query: 236 SEQSVTV-AGWGWT 248
+ + V GWG T
Sbjct: 116 AAGTTCVTTGWGLT 129
>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
pdb|3BEU|B Chain B, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
Length = 224
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 115/267 (43%), Gaps = 50/267 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
+VGG A GEFP++V L CGG + + ++TAAHC+ + S I T
Sbjct: 1 VVGGTRAAQGEFPFMVRLSMG----CGGALYAQDIVLTAAHCVSGSGNNTS---ITATGG 53
Query: 177 EHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDYS 236
DL S V +++ P + ++ D AL++L + I +P + + Y+
Sbjct: 54 VVDLQSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPIN-----QPTLKIATTTAYN 108
Query: 237 EQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH 296
+ + TVAGWG E SQ R L K + VS+ C +S I V +CAG+
Sbjct: 109 QGTFTVAGWGANREGGSQQR---YLLKANVPFVSDAAC----RSSSSFILVANEMICAGY 161
Query: 297 EQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLL-GAESTQVIGL 355
+ +D C Q DSGGP+ A+ +G+
Sbjct: 162 DTKQEDTC------------------------------QGDSGGPMFRKDNADEWVQVGI 191
Query: 356 VSTGIGCARPRLPGLYTRLTRYIGWIS 382
VS G GCAR G+YT ++ + I+
Sbjct: 192 VSWGEGCARKGKYGVYTEVSTFASAIA 218
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLM 58
L K + VS+ C+ S I V +CAG++ +D C DSGGP+
Sbjct: 130 LLKANVPFVSDAACR----SSSSFILVANEMICAGYDTKQEDTCQGDSGGPMF 178
>pdb|3FZZ|A Chain A, Structure Of Grc
pdb|3FZZ|B Chain B, Structure Of Grc
Length = 227
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 125/278 (44%), Gaps = 62/278 (22%)
Query: 117 IVGGLAANPGEFPWIVSLK--RHGGH--FCGGTIIHEQWIVTAAHCLCNGPSPLSASQIN 172
I+GG +P P++ + + GG FCGG ++ +++++TAAHC +
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHC--------KGRSMT 52
Query: 173 VTLKEHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS 230
VTL H++ + +PV + + HP ++ +NDI LL+L R+ + + +RP LP
Sbjct: 53 VTLGAHNIKAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPR 112
Query: 231 GSLDYSE-QSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKE 289
+ VAGWG + G L +V L+V +QVC++ +QS + N
Sbjct: 113 RNAHVKPGDECYVAGWGKVTPD---GEFPKTLHEVKLTVQKDQVCESQFQSSYNRAN--- 166
Query: 290 SQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAES 349
++C G + +G + + DSGGPL+ A +
Sbjct: 167 -EICVGDSK-----------------IKGASF-------------EEDSGGPLVCKRAAA 195
Query: 350 TQVIGLVSTG--IGCARPRLPGLYTRLTRYIGWISDTL 385
G+VS G G A P ++TR+ ++ WI T+
Sbjct: 196 ----GIVSYGQTDGSA----PQVFTRVLSFVSWIKKTM 225
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
L +V L+V +QVC++ +QS + N ++C G + + DSGGPL+ A +
Sbjct: 141 LHEVKLTVQKDQVCESQFQSSYNRAN----EICVGDSKIKGASFEEDSGGPLVCKRAAA- 195
Query: 66 QVIGLVSTGIGSPTSVVQLLTR 87
G+VS G + S Q+ TR
Sbjct: 196 ---GIVSYG-QTDGSAPQVFTR 213
>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|2ZCK|P Chain P, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|3QUM|P Chain P, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
pdb|3QUM|Q Chain Q, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
Length = 237
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 109/283 (38%), Gaps = 64/283 (22%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG PW V + G CGG ++H QW++TAAHC+ N + + L
Sbjct: 1 IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRN--------KSVILLG 52
Query: 177 EHDLSRPSIS--TVPVLRIMFHPSHSCSSFNN-----------DIALLELTRSIQWSDLI 223
H L P + V HP + S N D+ LL L+ + +D +
Sbjct: 53 RHSLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAV 112
Query: 224 RPACLPSGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGK 283
+ LP+ T GW + P + LQ V L V+SN VC + +
Sbjct: 113 KVMDLPTQE---PALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQK-- 167
Query: 284 KINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLM 343
V + +CAG GGK C DSGGPL+
Sbjct: 168 ---VTKFMLCAGRWTGGKSTC------------------------------SGDSGGPLV 194
Query: 344 LLGAESTQVIGLVSTGIG-CARPRLPGLYTRLTRYIGWISDTL 385
G + G+ S G CA P P LYT++ Y WI DT+
Sbjct: 195 CNGV----LQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTI 233
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
LQ V L V+SN VC + + V + +CAG GGK C DSGGPL+ G
Sbjct: 147 LQCVDLHVISNDVCAQVHPQK-----VTKFMLCAGRWTGGKSTCSGDSGGPLVCNGV 198
>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G
pdb|3G01|B Chain B, Structure Of Grc Mutant E192rE193G
Length = 227
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 125/278 (44%), Gaps = 62/278 (22%)
Query: 117 IVGGLAANPGEFPWIVSLK--RHGGH--FCGGTIIHEQWIVTAAHCLCNGPSPLSASQIN 172
I+GG +P P++ + + GG FCGG ++ +++++TAAHC +
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHC--------KGRSMT 52
Query: 173 VTLKEHDLS--RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS 230
VTL H++ + +PV + + HP ++ +NDI LL+L R+ + + +RP LP
Sbjct: 53 VTLGAHNIKAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPR 112
Query: 231 GSLDYSE-QSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKE 289
+ VAGWG + G L +V L+V +QVC++ +QS + N
Sbjct: 113 RNAHVKPGDECYVAGWGKVTPD---GEFPKTLHEVKLTVQKDQVCESQFQSSYNRAN--- 166
Query: 290 SQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAES 349
++C G + +G + + DSGGPL+ A +
Sbjct: 167 -EICVGDSK-----------------IKGASF-------------RGDSGGPLVCKRAAA 195
Query: 350 TQVIGLVSTG--IGCARPRLPGLYTRLTRYIGWISDTL 385
G+VS G G A P ++TR+ ++ WI T+
Sbjct: 196 ----GIVSYGQTDGSA----PQVFTRVLSFVSWIKKTM 225
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
L +V L+V +QVC++ +QS + N ++C G + + DSGGPL+ A +
Sbjct: 141 LHEVKLTVQKDQVCESQFQSSYNRAN----EICVGDSKIKGASFRGDSGGPLVCKRAAA- 195
Query: 66 QVIGLVSTGIGSPTSVVQLLTR 87
G+VS G + S Q+ TR
Sbjct: 196 ---GIVSYG-QTDGSAPQVFTR 213
>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The
Venom Of Copperhead Snake Agkistrodon Contortrix
Contortrix
pdb|2AIQ|A Chain A, Crystal Structure Of Benzamidine-Inhibited Protein C
Activator From The Venom Of Copperhead Snake Agkistrodon
Contortrix Contortrix
Length = 231
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 121/273 (44%), Gaps = 56/273 (20%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
++GG N E ++ +L G CGGT+I+++W++TA HC + + L
Sbjct: 1 VIGGDECNINEHRFL-ALVYANGSLCGGTLINQEWVLTARHC--------DRGNMRIYLG 51
Query: 177 EHD---LSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
H+ L++ ++ P + + + + ++ DI L+ L R ++ S I P LPS
Sbjct: 52 MHNLKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPP 111
Query: 234 DYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMC 293
+ GWG T +P+ ++ ++++ VCQA Y+ + + +C
Sbjct: 112 SVGS-VCRIMGWG-TITSPN-ATLPDVPHCANINILDYAVCQAAYKG------LAATTLC 162
Query: 294 AGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVI 353
AG +GGKD C + DSGGPL+ G Q
Sbjct: 163 AGILEGGKDTC------------------------------KGDSGGPLICNG----QFQ 188
Query: 354 GLVSTGIG-CARPRLPGLYTRLTRYIGWISDTL 385
G++S G CA+PR PG+YT++ Y WI +
Sbjct: 189 GILSVGGNPCAQPRKPGIYTKVFDYTDWIQSII 221
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 11 LSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGL 70
++++ VCQA Y+ + + +CAG +GGKD C DSGGPL+ G Q G+
Sbjct: 141 INILDYAVCQAAYKG------LAATTLCAGILEGGKDTCKGDSGGPLICNG----QFQGI 190
Query: 71 VSTGIGSPTS 80
+S G G+P +
Sbjct: 191 LSVG-GNPCA 199
>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|X Chain X, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 240
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 115/271 (42%), Gaps = 64/271 (23%)
Query: 129 PWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLKEHDL--SRPSIS 186
PW V++ R + CGG ++ W++TAAHC + V L +++ PS
Sbjct: 16 PWHVAVYRFNKYQCGGVLLDRNWVLTAAHCY--------NDKYQVWLGKNNFLEDEPSDQ 67
Query: 187 TVPVLRIMFHPSHSCS-----------SFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
V + + HP + S ++ND+ LL L++ +D+++P LP+ +
Sbjct: 68 HRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPT---EE 124
Query: 236 SEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
+ T GW + P + + + LQ V L ++ N+ C + ++ V ++ +CAG
Sbjct: 125 PKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDC-----DKAHEMKVTDAMLCAG 179
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
GG C + DSGGPL+ G + G+
Sbjct: 180 EMDGGSYTC------------------------------EHDSGGPLICDGI----LQGI 205
Query: 356 VSTGIG-CARPRLPGLYTRLTRYIGWISDTL 385
S G C P P +YT+L ++ WI +T+
Sbjct: 206 TSWGPEPCGEPTEPSVYTKLIKFSSWIRETM 236
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
+ + LQ V L ++ N+ C + ++ V ++ +CAG GG C DSGGPL+
Sbjct: 145 KYPDDLQCVNLKLLPNEDC-----DKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICD 199
Query: 61 G 61
G
Sbjct: 200 G 200
>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|B Chain B, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|C Chain C, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|D Chain D, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|E Chain E, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|F Chain F, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
Length = 276
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 124/297 (41%), Gaps = 65/297 (21%)
Query: 105 CGRSLASRRTGKIVGGLAANPGEFPWIVSL-KRHGG----HFCGGTIIHEQWIVTAAHCL 159
CG+ R KI+GG PW ++ +RH G + CGG+++ W+++A HC
Sbjct: 13 CGQKTLRPRF-KIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCF 71
Query: 160 CNGPSP------LSASQINVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSF--NNDIALL 211
+ P L S++N + V ++ H +S + +NDIALL
Sbjct: 72 IDYPKKEDYIVYLGRSRLNSNTQGE-------MKFEVENLILHKDYSADTLAHHNDIALL 124
Query: 212 ELT----RSIQWSDLIRPACLPSGSLDYSE-QSVTVAGWGWTNENPSQGRRSNILQKVAL 266
++ R Q S I+ CLPS D S + G+G EN + L+ +
Sbjct: 125 KIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFG--KENSTDYLYPEQLKMTVV 182
Query: 267 SVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSH 324
++S++ CQ +Y SE V +CA Q D+C
Sbjct: 183 KLISHRECQQPHYYGSE-----VTTKMLCAADPQWKTDSC-------------------- 217
Query: 325 RSGVHWDPPLQADSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
Q DSGGPL+ + G+VS G GCA PG+YTR++ ++ WI
Sbjct: 218 ----------QGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 264
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 6 LQKVALSVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
L+ + ++S++ CQ +Y SE V +CA Q D+C DSGGPL+
Sbjct: 177 LKMTVVKLISHRECQQPHYYGSE-----VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG 231
Query: 64 STQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 232 RMTLTGIVSWGRG 244
>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDG|B Chain B, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDH|A Chain A, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|B Chain B, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|C Chain C, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|D Chain D, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDI|A Chain A, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|B Chain B, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|C Chain C, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|D Chain D, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|E Chain E, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|F Chain F, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|G Chain G, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|H Chain H, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|I Chain I, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|J Chain J, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|K Chain K, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|L Chain L, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|M Chain M, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|N Chain N, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|O Chain O, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|P Chain P, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
Length = 223
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 112/273 (41%), Gaps = 56/273 (20%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
I+ G +P PW +L FC G ++H QW+++AAHC N + L
Sbjct: 1 IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQN--------SYTIGLG 52
Query: 177 EHDLS---RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
H L P V + HP ++ ND+ L++L S+ SD IR + S
Sbjct: 53 LHSLEADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIAS-QC 111
Query: 234 DYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMC 293
+ S V+GWG + GR +LQ V +SVVS +VC Y S C
Sbjct: 112 PTAGNSCLVSGWGLL----ANGRMPTVLQCVNVSVVSEEVCSKLYDPL-----YHPSMFC 162
Query: 294 AGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVI 353
AG Q KD+C DSGGPL+ G +
Sbjct: 163 AGGGQDQKDSC------------------------------NGDSGGPLICNG----YLQ 188
Query: 354 GLVSTGIG-CARPRLPGLYTRLTRYIGWISDTL 385
GLVS G C + +PG+YT L ++ WI T+
Sbjct: 189 GLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTV 221
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 35 SQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGLVSTG 74
S CAG Q KD+C DSGGPL+ G + GLVS G
Sbjct: 159 SMFCAGGGQDQKDSCNGDSGGPLICNG----YLQGLVSFG 194
>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The
Molecular Determinants Of Substrate Specificity
Length = 234
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 120/275 (43%), Gaps = 51/275 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
I+GG P P++V L C G +I + W++TAAHC N S V L
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKRS-------QVILG 53
Query: 177 EHDLSR--PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
H ++R P+ + V + +P + ++ D+ LL+LT + + + LP D
Sbjct: 54 AHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDD 113
Query: 235 YSEQSV-TVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMC 293
++ VAGWG T+ + S S+ L++V ++++ +VC + + + +C
Sbjct: 114 VKPGTMCQVAGWGRTHNSASW---SDTLREVEITIIDRKVCNDRNHYNFNPV-IGMNMVC 169
Query: 294 AGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVI 353
AG +GG+D+C DSG PL+ G
Sbjct: 170 AGSLRGGRDSC------------------------------NGDSGSPLLCEGVFR---- 195
Query: 354 GLVSTGI--GCARPRLPGLYTRLT-RYIGWISDTL 385
G+ S G+ C PR PG+Y L+ +++ WI T+
Sbjct: 196 GVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTI 230
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
S+ L++V ++++ +VC + + + +CAG +GG+D+C DSG PL+ G
Sbjct: 135 SDTLREVEITIIDRKVCNDRNHYNFNPV-IGMNMVCAGSLRGGRDSCNGDSGSPLLCEGV 193
>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A
pdb|1OP8|B Chain B, Crystal Structure Of Human Granzyme A
pdb|1OP8|C Chain C, Crystal Structure Of Human Granzyme A
pdb|1OP8|D Chain D, Crystal Structure Of Human Granzyme A
pdb|1OP8|E Chain E, Crystal Structure Of Human Granzyme A
pdb|1OP8|F Chain F, Crystal Structure Of Human Granzyme A
Length = 234
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 120/275 (43%), Gaps = 51/275 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
I+GG P P++V L C G +I + W++TAAHC N S V L
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKRS-------QVILG 53
Query: 177 EHDLSR--PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
H ++R P+ + V + +P + ++ D+ LL+LT + + + LP D
Sbjct: 54 AHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDD 113
Query: 235 YSEQSV-TVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMC 293
++ VAGWG T+ + S S+ L++V ++++ +VC + + + +C
Sbjct: 114 VKPGTMCQVAGWGRTHNSASW---SDTLREVNITIIDRKVCNDRNHYNFNPV-IGMNMVC 169
Query: 294 AGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVI 353
AG +GG+D+C DSG PL+ G
Sbjct: 170 AGSLRGGRDSC------------------------------NGDSGSPLLCEGVFR---- 195
Query: 354 GLVSTGI--GCARPRLPGLYTRLT-RYIGWISDTL 385
G+ S G+ C PR PG+Y L+ +++ WI T+
Sbjct: 196 GVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTI 230
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
S+ L++V ++++ +VC + + + +CAG +GG+D+C DSG PL+ G
Sbjct: 135 SDTLREVNITIIDRKVCNDRNHYNFNPV-IGMNMVCAGSLRGGRDSCNGDSGSPLLCEGV 193
>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
pdb|3IG6|D Chain D, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
Length = 253
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 119/285 (41%), Gaps = 64/285 (22%)
Query: 117 IVGGLAANPGEFPWIVSL-KRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSP------ 165
I+GG PW ++ +RH G + CGG++I W+++A HC + P
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 166 LSASQINVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSF--NNDIALLELT----RSIQW 219
L S++N + V ++ H +S + +NDIALL++ R Q
Sbjct: 61 LGRSRLNSNTQGE-------MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIRPACLPSGSLD-YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQA-- 276
S I+ CLPS D S + G+G EN + L+ + ++S++ CQ
Sbjct: 114 SRTIQTICLPSMYNDPQFGTSCEITGFG--KENSTDYLYPEQLKMTVVKLISHRECQQPH 171
Query: 277 WYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQA 336
+Y SE V +CA Q D+C Q
Sbjct: 172 YYGSE-----VTTKMLCAADPQWKTDSC------------------------------QG 196
Query: 337 DSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
DSGGPL+ + G+VS G GCA PG+YTR++ ++ WI
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 6 LQKVALSVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
L+ + ++S++ CQ +Y SE V +CA Q D+C DSGGPL+
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSE-----VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG 208
Query: 64 STQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 209 RMTLTGIVSWGRG 221
>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human
Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With
Vacant Active Site
Length = 238
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 111/284 (39%), Gaps = 65/284 (22%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG PW +L CGG ++H QW++TAAHC+ + + L
Sbjct: 1 IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCI--------SDNYQLWLG 52
Query: 177 EHDL--SRPSISTVPVLRIMFHPSHSCS-----------SFNNDIALLELTRSIQ-WSDL 222
H+L + V V HP + S +++D+ LL LT +D
Sbjct: 53 RHNLFDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDA 112
Query: 223 IRPACLPSGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEG 282
++ LP+ + E T GW + P + LQ V L ++ N C+ + +
Sbjct: 113 VKVVELPT---EEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHVQK- 168
Query: 283 KKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPL 342
V + +C GH +GGKD C DSGGPL
Sbjct: 169 ----VTDFMLCVGHLEGGKDTC------------------------------VGDSGGPL 194
Query: 343 MLLGAESTQVIGLVSTG-IGCARPRLPGLYTRLTRYIGWISDTL 385
M G + G+ S G + C P P + R+ Y+ WI DT+
Sbjct: 195 MCDGV----LQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTI 234
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA-ES 64
LQ V L ++ N C+ + + V + +C GH +GGKD C DSGGPLM G +
Sbjct: 148 LQCVDLKILPNDECKKAHVQK-----VTDFMLCVGHLEGGKDTCVGDSGGPLMCDGVLQG 202
Query: 65 TQVIGLVSTGI-GSPTSVVQLLT--RWTLD 91
G V G P+ V++L+ +W D
Sbjct: 203 VTSWGYVPCGTPNKPSVAVRVLSYVKWIED 232
>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWI|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWJ|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWK|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQT|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1U6Q|A Chain A, Substituted 2-naphthamadine Inhibitors Of Urokinase
Length = 245
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 119/285 (41%), Gaps = 64/285 (22%)
Query: 117 IVGGLAANPGEFPWIVSL-KRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSP------ 165
I+GG PW ++ +RH G + CGG+++ W+++A HC + P
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 166 LSASQINVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSF--NNDIALLELT----RSIQW 219
L S++N + V ++ H +S + +NDIALL++ R Q
Sbjct: 61 LGRSRLNSNTQGE-------MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIRPACLPSGSLD-YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQA-- 276
S I+ CLPS D S + G+G EN + L+ + ++S++ CQ
Sbjct: 114 SRTIQTICLPSMYNDPQFGTSCEITGFG--KENSTDYLYPEQLKMTVVKLISHRECQQPH 171
Query: 277 WYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQA 336
+Y SE V +CA Q D+C Q
Sbjct: 172 YYGSE-----VTTKMLCAADPQWKTDSC------------------------------QG 196
Query: 337 DSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
DSGGPL+ + G+VS G GCA PG+YTR++ ++ WI
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 6 LQKVALSVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
L+ + ++S++ CQ +Y SE V +CA Q D+C DSGGPL+
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSE-----VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG 208
Query: 64 STQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 209 RMTLTGIVSWGRG 221
>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
pdb|1LMW|D Chain D, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
Length = 253
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 119/285 (41%), Gaps = 64/285 (22%)
Query: 117 IVGGLAANPGEFPWIVSL-KRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSP------ 165
I+GG PW ++ +RH G + CGG+++ W+++A HC + P
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 166 LSASQINVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSF--NNDIALLELT----RSIQW 219
L S++N + V ++ H +S + +NDIALL++ R Q
Sbjct: 61 LGRSRLNSNTQGE-------MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIRPACLPSGSLD-YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQA-- 276
S I+ CLPS D S + G+G EN + L+ + ++S++ CQ
Sbjct: 114 SRTIQTICLPSMYNDPQFGTSCEITGFG--KENSTDYLYPEQLKMTVVKLISHRECQQPH 171
Query: 277 WYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQA 336
+Y SE V +CA Q D+C Q
Sbjct: 172 YYGSE-----VTTKMLCAADPQWKTDSC------------------------------QG 196
Query: 337 DSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
DSGGPL+ + G+VS G GCA PG+YTR++ ++ WI
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 6 LQKVALSVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
L+ + ++S++ CQ +Y SE V +CA Q D+C DSGGPL+
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSE-----VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG 208
Query: 64 STQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 209 RMTLTGIVSWGRG 221
>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex
pdb|1VJ9|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt464 Complex
pdb|1VJA|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt463 Complex
Length = 262
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 123/297 (41%), Gaps = 65/297 (21%)
Query: 105 CGRSLASRRTGKIVGGLAANPGEFPWIVSL-KRHGG----HFCGGTIIHEQWIVTAAHCL 159
CG+ R KI+GG PW ++ +RH G + CGG++I W+++A HC
Sbjct: 5 CGQKTLRPRF-KIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCF 63
Query: 160 CNGPSP------LSASQINVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSF--NNDIALL 211
+ P L S++N + V ++ H +S + +NDIALL
Sbjct: 64 IDYPKKEDYIVYLGRSRLNSNTQGE-------MKFEVENLILHKDYSADTLAHHNDIALL 116
Query: 212 ELT----RSIQWSDLIRPACLPSGSLD-YSEQSVTVAGWGWTNENPSQGRRSNILQKVAL 266
++ R Q S I+ LPS D S + G+G EN + L+ +
Sbjct: 117 KIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFG--KENSTDYLYPEQLKMTVV 174
Query: 267 SVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSH 324
++S++ CQ +Y SE V +CA Q D+C
Sbjct: 175 KLISHRECQQPHYYGSE-----VTTKMLCAADPQWKTDSC-------------------- 209
Query: 325 RSGVHWDPPLQADSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
Q DSGGPL+ + G+VS G GCA PG+YTR++ ++ WI
Sbjct: 210 ----------QGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 256
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 6 LQKVALSVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
L+ + ++S++ CQ +Y SE V +CA Q D+C DSGGPL+
Sbjct: 169 LKMTVVKLISHRECQQPHYYGSE-----VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG 223
Query: 64 STQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 224 RMTLTGIVSWGRG 236
>pdb|1NN6|A Chain A, Human Pro-Chymase
Length = 228
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 118/286 (41%), Gaps = 76/286 (26%)
Query: 115 GKIVGGLAANPGEFPWIVSLK----RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQ 170
G+I+GG P P++ L+ FCGG +I +++TAAHC +
Sbjct: 1 GEIIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHC--------AGRS 52
Query: 171 INVTLKEHDLSRPSIS--TVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACL 228
I VTL H+++ + + V++ HP ++ S+ ++DI LL+L + L
Sbjct: 53 ITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLT-------L 105
Query: 229 PSGSLDYSEQ--------SVTVAGWGWTNE-NPSQGRRSNILQKVALSVVSNQVCQAWYQ 279
G+L + Q VAGWG T P S+ LQ+V L ++ Q C +
Sbjct: 106 AVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPG----SDTLQEVKLRLMDPQACSHFRD 161
Query: 280 SEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSG 339
+ Q+C G+ + K A + DSG
Sbjct: 162 FD------HNLQLCVGNPRKTKSA------------------------------FKGDSG 185
Query: 340 GPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
GPL+ G G+VS G A+P P ++TR++ Y WI+ L
Sbjct: 186 GPLLCAGVAQ----GIVSYGRSDAKP--PAVFTRISHYRPWINQIL 225
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
S+ LQ+V L ++ Q C + + Q+C G+ + K A DSGGPL+ G
Sbjct: 140 SDTLQEVKLRLMDPQACSHFRDFD------HNLQLCVGNPRKTKSAFKGDSGGPLLCAGV 193
Query: 63 ESTQVIGLVSTG 74
G+VS G
Sbjct: 194 AQ----GIVSYG 201
>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin
pdb|1AZZ|B Chain B, Fiddler Crab Collagenase Complexed To Ecotin
Length = 226
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 112/267 (41%), Gaps = 51/267 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG+ A P +P +L +FCGG++I +WI+TAAHC+ A ++V L
Sbjct: 1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCM------DGAGFVDVVLG 54
Query: 177 EHDLSRPSISTVPVLRIMF--HPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
H++ + V + F H +++ +NDIA++ L + + I LPS +
Sbjct: 55 AHNIREDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVG 114
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
VT GWG ++ S S++L++V + ++SN C A Y V + +C
Sbjct: 115 VG-TVVTPTGWGLPSD--SALGISDVLRQVDVPIMSNADCDAVYGI------VTDGNICI 165
Query: 295 GHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIG 354
GGK C DSGGPL G T I
Sbjct: 166 -DSTGGKGTC------------------------------NGDSGGPLNYNGL--TYGIT 192
Query: 355 LVSTGIGCARPRLPGLYTRLTRYIGWI 381
GC P +TR+T ++ WI
Sbjct: 193 SFGAAAGC-EAGYPDAFTRVTYFLDWI 218
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPL 57
S++L++V + ++SN C A Y V + +C GGK C DSGGPL
Sbjct: 135 SDVLRQVDVPIMSNADCDAVYGI------VTDGNICI-DSTGGKGTCNGDSGGPL 182
>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex
With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|1T31|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|2HVX|A Chain A, Discovery Of Potent, Orally Active, Nonpeptide Inhibitors
Of Human Mast Cell Chymase By Using Structure-Based Drug
Design
pdb|3S0N|A Chain A, Crystal Structure Of Human Chymase With Benzimidazolone
Inhibitor
Length = 226
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 117/284 (41%), Gaps = 76/284 (26%)
Query: 117 IVGGLAANPGEFPWIVSLK----RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQIN 172
I+GG P P++ L+ FCGG +I +++TAAHC + I
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHC--------AGRSIT 52
Query: 173 VTLKEHDLSRPSIS--TVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS 230
VTL H+++ + + V++ HP ++ S+ ++DI LL+L + L
Sbjct: 53 VTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLT-------LAV 105
Query: 231 GSLDYSEQS--------VTVAGWGWTNE-NPSQGRRSNILQKVALSVVSNQVCQAWYQSE 281
G+L + Q VAGWG T P S+ LQ+V L ++ Q C + +
Sbjct: 106 GTLPFPSQKNFVPPGRMCRVAGWGRTGVLKPG----SDTLQEVKLRLMDPQACSHFRDFD 161
Query: 282 GKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGP 341
Q+C G+ + K A + DSGGP
Sbjct: 162 ------HNLQLCVGNPRKTKSA------------------------------FKGDSGGP 185
Query: 342 LMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
L+ GA G+VS G A+P P ++TR++ Y WI+ L
Sbjct: 186 LLCAGAAQ----GIVSYGRSDAKP--PAVFTRISHYQPWINQIL 223
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
S+ LQ+V L ++ Q C + + Q+C G+ + K A DSGGPL+ GA
Sbjct: 138 SDTLQEVKLRLMDPQACSHFRDFD------HNLQLCVGNPRKTKSAFKGDSGGPLLCAGA 191
Query: 63 ESTQVIGLVSTG 74
G+VS G
Sbjct: 192 AQ----GIVSYG 199
>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
pdb|1NPM|B Chain B, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
Length = 225
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 118/277 (42%), Gaps = 59/277 (21%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
I+ G P PW +L + CGG ++ ++W++TAAHC + +V L
Sbjct: 1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHC--------KKQKYSVRLG 52
Query: 177 EHDL---SRPSISTVPVLRIMFHPSHSCSS---FNNDIALLELTRSIQWSDLIRPACLPS 230
+H L +P + V + + HP ++ S+ ++DI L+ L S D ++P L +
Sbjct: 53 DHSLQSRDQPE-QEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLAN 111
Query: 231 GSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKES 290
++ + ++GWG T +P Q N L + + S C+ Y + + E
Sbjct: 112 LCPKVGQKCI-ISGWG-TVTSP-QENFPNTLNCAEVKIYSQNKCERAYPGK-----ITEG 163
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
+CAG G D C Q DSGGPL+ G
Sbjct: 164 MVCAGSSNGA-DTC------------------------------QGDSGGPLVCDGM--- 189
Query: 351 QVIGLVSTGIG-CARPRLPGLYTRLTRYIGWISDTLD 386
+ G+ S G C +P PG+YT++ RY WI T+D
Sbjct: 190 -LQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD 225
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLG 61
N L + + S C+ Y + + E +CAG G D C DSGGPL+ G
Sbjct: 137 NTLNCAEVKIYSQNKCERAYPGK-----ITEGMVCAGSSNGA-DTCQGDSGGPLVCDG 188
>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1O5B|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5C|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
Length = 253
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 118/285 (41%), Gaps = 64/285 (22%)
Query: 117 IVGGLAANPGEFPWIVSL-KRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSP------ 165
I+GG PW ++ +RH G + CGG+++ W+++A HC + P
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 166 LSASQINVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSF--NNDIALLELT----RSIQW 219
L S++N + V ++ H +S + +NDIALL++ R Q
Sbjct: 61 LGRSRLNSNTQGE-------MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIRPACLPSGSLD-YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQA-- 276
S I+ CLPS D S + G+G E + L+ + ++S++ CQ
Sbjct: 114 SRTIQTICLPSMYNDPQFGTSCEITGFG--KEASTDYLYPEQLKMTVVKLISHRECQQPH 171
Query: 277 WYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQA 336
+Y SE V +CA Q DAC Q
Sbjct: 172 YYGSE-----VTTKMLCAADPQWKTDAC------------------------------QG 196
Query: 337 DSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
DSGGPL+ + G+VS G GCA PG+YTR++ ++ WI
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 6 LQKVALSVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
L+ + ++S++ CQ +Y SE V +CA Q DAC DSGGPL+
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSE-----VTTKMLCAADPQWKTDACQGDSGGPLVCSLQG 208
Query: 64 STQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 209 RMTLTGIVSWGRG 221
>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North
Atlantic Salmon At 1.61 Angstroms Resolution
Length = 236
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 120/282 (42%), Gaps = 59/282 (20%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSPLSASQIN 172
+VGG A P +PW +SL+ G H CGG++I + W++TAAHC+ SA
Sbjct: 1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCV------DSARTWR 54
Query: 173 VTLKEHDLS----RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACL 228
V L EH+L+ + I TV + I + + DIALL L + ++ A L
Sbjct: 55 VVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAAL 114
Query: 229 -PSGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQA--WYQSEGKKI 285
PS + + + GWG + + G S+ L++ L V + C + W+ S
Sbjct: 115 PPSNQILPNNNPCYITGWG---KTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGST---- 167
Query: 286 NVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLL 345
VK + +CAG G C DSGGPL
Sbjct: 168 -VKTTMVCAG--GGANSGC------------------------------NGDSGGPLNCQ 194
Query: 346 GAESTQVIGLVS--TGIGCARPRLPGLYTRLTRYIGWISDTL 385
S V G+ S + GC + P ++TR++ YI W++ +
Sbjct: 195 VNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM 236
>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small
Molecule Inhibitor
Length = 226
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 117/284 (41%), Gaps = 76/284 (26%)
Query: 117 IVGGLAANPGEFPWIVSLK----RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQIN 172
I+GG P P++ L+ FCGG +I +++TAAHC + I
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHC--------AGRSIT 52
Query: 173 VTLKEHDLSRPSIS--TVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS 230
VTL H+++ + + V++ HP ++ S+ ++DI LL+L + L
Sbjct: 53 VTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLT-------LAV 105
Query: 231 GSLDYSEQ--------SVTVAGWGWTNE-NPSQGRRSNILQKVALSVVSNQVCQAWYQSE 281
G+L + Q VAGWG T P S+ LQ+V L ++ Q C + +
Sbjct: 106 GTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPG----SDTLQEVKLRLMDPQACSHFRDFD 161
Query: 282 GKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGP 341
Q+C G+ + K A + DSGGP
Sbjct: 162 ------HNLQLCVGNPRKTKSA------------------------------FKGDSGGP 185
Query: 342 LMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
L+ GA G+VS G A+P P ++TR++ Y WI+ L
Sbjct: 186 LLCAGAAQ----GIVSYGRSDAKP--PAVFTRISHYQPWINQIL 223
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
S+ LQ+V L ++ Q C + + Q+C G+ + K A DSGGPL+ GA
Sbjct: 138 SDTLQEVKLRLMDPQACSHFRDFD------HNLQLCVGNPRKTKSAFKGDSGGPLLCAGA 191
Query: 63 ESTQVIGLVSTG 74
G+VS G
Sbjct: 192 AQ----GIVSYG 199
>pdb|4GSO|A Chain A, Structure Of Jararacussin-I
Length = 232
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 115/270 (42%), Gaps = 57/270 (21%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
++GG + E P++ L HG +FCG T+I+++W+VTAAHC ++ + L
Sbjct: 1 VLGGDECDINEHPFLAFLYSHG-YFCGLTLINQEWVVTAAHC--------DSTNFQMQLG 51
Query: 177 EHD---LSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
H L+ + P + + + + DI L++L + I S I P LPS
Sbjct: 52 VHSKKVLNEDEQTRNPKEKFICPNKNMSEVLDKDIMLIKLDKPISNSKHIAPLSLPSNPP 111
Query: 234 DYSEQSVT-VAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
S SV + GWG P++ ++ +++V +VCQ Y K + +
Sbjct: 112 --SVGSVCRIMGWGSITI-PNE-TYPDVPYCANINLVDYEVCQGAYNGLPAK-----TTL 162
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG +GGKD C DSGGPL+ G Q
Sbjct: 163 CAGVLEGGKDTCV------------------------------GDSGGPLICNG----QF 188
Query: 353 IGLVSTGI-GCARPRLPGLYTRLTRYIGWI 381
G+VS G C + PG+YT + Y WI
Sbjct: 189 QGIVSYGAHSCGQGPKPGIYTNVFDYTDWI 218
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 11 LSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGL 70
+++V +VCQ Y K + +CAG +GGKD C DSGGPL+ G Q G+
Sbjct: 141 INLVDYEVCQGAYNGLPAK-----TTLCAGVLEGGKDTCVGDSGGPLICNG----QFQGI 191
Query: 71 VSTG 74
VS G
Sbjct: 192 VSYG 195
>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And
5-Nitro-1h-Indole-2- Amidine
Length = 246
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 118/285 (41%), Gaps = 64/285 (22%)
Query: 117 IVGGLAANPGEFPWIVSL-KRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSP------ 165
I+GG PW ++ +RH G + CGG++I W+++A HC + P
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 166 LSASQINVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSF--NNDIALLELT----RSIQW 219
L S++N + V ++ H +S + +NDIALL++ R Q
Sbjct: 61 LGRSRLNSNTQGE-------MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIRPACLPSGSLD-YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQA-- 276
S I+ LPS D S + G+G EN + L+ + ++S++ CQ
Sbjct: 114 SRTIQTIALPSMYNDPQFGTSCEITGFG--KENSTDYLYPEQLKMTVVKLISHRECQQPH 171
Query: 277 WYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQA 336
+Y SE V +CA Q D+C Q
Sbjct: 172 YYGSE-----VTTKMLCAADPQWKTDSC------------------------------QG 196
Query: 337 DSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
DSGGPL+ + G+VS G GCA PG+YTR++ ++ WI
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 6 LQKVALSVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
L+ + ++S++ CQ +Y SE V +CA Q D+C DSGGPL+
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSE-----VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG 208
Query: 64 STQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 209 RMTLTGIVSWGRG 221
>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWH|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQA|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQO|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
Length = 245
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 118/285 (41%), Gaps = 64/285 (22%)
Query: 117 IVGGLAANPGEFPWIVSL-KRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSP------ 165
I+GG PW ++ +RH G + CGG+++ W+++A HC + P
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 166 LSASQINVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSF--NNDIALLELT----RSIQW 219
L S++N + V ++ H +S + +NDIALL++ R Q
Sbjct: 61 LGRSRLNSNTQGE-------MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIRPACLPSGSLD-YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQA-- 276
S I+ CLPS D S + G+G E + L+ + ++S++ CQ
Sbjct: 114 SRTIQTICLPSMYNDPQFGTSCEITGFG--KEQSTDYLYPEQLKMTVVKLISHRECQQPH 171
Query: 277 WYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQA 336
+Y SE V +CA Q D+C Q
Sbjct: 172 YYGSE-----VTTKMLCAADPQWKTDSC------------------------------QG 196
Query: 337 DSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
DSGGPL+ + G+VS G GCA PG+YTR++ ++ WI
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 6 LQKVALSVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
L+ + ++S++ CQ +Y SE V +CA Q D+C DSGGPL+
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSE-----VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG 208
Query: 64 STQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 209 RMTLTGIVSWGRG 221
>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W10|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W11|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W12|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W13|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W14|U Chain U, Urokinase Type Plasminogen Activator
pdb|3MHW|U Chain U, The Complex Crystal Structure Of Urokianse And 2-
Aminobenzothiazole
Length = 247
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 118/285 (41%), Gaps = 64/285 (22%)
Query: 117 IVGGLAANPGEFPWIVSL-KRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSP------ 165
I+GG PW ++ +RH G + CGG++I W+++A HC + P
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 166 LSASQINVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSF--NNDIALLELT----RSIQW 219
L S++N + V ++ H +S + +NDIALL++ R Q
Sbjct: 61 LGRSRLNSNTQGE-------MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIRPACLPSGSLD-YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQA-- 276
S I+ LPS D S + G+G EN + L+ + ++S++ CQ
Sbjct: 114 SRTIQTISLPSMYNDPQFGTSCEITGFG--KENSTDYLYPEQLKMTVVKLISHRECQQPH 171
Query: 277 WYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQA 336
+Y SE V +CA Q D+C Q
Sbjct: 172 YYGSE-----VTTKMLCAADPQWKTDSC------------------------------QG 196
Query: 337 DSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
DSGGPL+ + G+VS G GCA PG+YTR++ ++ WI
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 6 LQKVALSVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
L+ + ++S++ CQ +Y SE V +CA Q D+C DSGGPL+
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSE-----VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG 208
Query: 64 STQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 209 RMTLTGIVSWGRG 221
>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex
pdb|1F5K|U Chain U, Urokinase Plasminogen Activator B-Chain-Benzamidine
Complex
pdb|1F5L|A Chain A, Urokinase Plasminogen Activator B-Chain-Amiloride Complex
pdb|1F92|A Chain A, Urokinase Plasminogen Activator B Chain-Uki-1d Complex
pdb|2R2W|U Chain U, Urokinase Plasminogen Activator B-Chain-Gppe Complex
pdb|2VIN|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIO|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIP|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIQ|A Chain A, Fragment-based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-type
Plasminogen Activator
pdb|2VIV|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIW|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
Length = 253
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 118/285 (41%), Gaps = 64/285 (22%)
Query: 117 IVGGLAANPGEFPWIVSL-KRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSP------ 165
I+GG PW ++ +RH G + CGG++I W+++A HC + P
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 166 LSASQINVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSF--NNDIALLELT----RSIQW 219
L S++N + V ++ H +S + +NDIALL++ R Q
Sbjct: 61 LGRSRLNSNTQGE-------MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIRPACLPSGSLD-YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQA-- 276
S I+ LPS D S + G+G EN + L+ + ++S++ CQ
Sbjct: 114 SRTIQTISLPSMYNDPQFGTSCEITGFG--KENSTDYLYPEQLKMTVVKLISHRECQQPH 171
Query: 277 WYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQA 336
+Y SE V +CA Q D+C Q
Sbjct: 172 YYGSE-----VTTKMLCAADPQWKTDSC------------------------------QG 196
Query: 337 DSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
DSGGPL+ + G+VS G GCA PG+YTR++ ++ WI
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 6 LQKVALSVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
L+ + ++S++ CQ +Y SE V +CA Q D+C DSGGPL+
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSE-----VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG 208
Query: 64 STQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 209 RMTLTGIVSWGRG 221
>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJ8|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJA|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJB|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1O3P|B Chain B, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1C5W|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5X|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Y|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Z|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GJ9|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJD|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJC|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
Length = 253
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 118/285 (41%), Gaps = 64/285 (22%)
Query: 117 IVGGLAANPGEFPWIVSL-KRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSP------ 165
I+GG PW ++ +RH G + CGG+++ W+++A HC + P
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 166 LSASQINVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSF--NNDIALLELT----RSIQW 219
L S++N + V ++ H +S + +NDIALL++ R Q
Sbjct: 61 LGRSRLNSNTQGE-------MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIRPACLPSGSLD-YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQA-- 276
S I+ CLPS D S + G+G E + L+ + ++S++ CQ
Sbjct: 114 SRTIQTICLPSMYNDPQFGTSCEITGFG--KEASTDYLYPEQLKMTVVKLISHRECQQPH 171
Query: 277 WYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQA 336
+Y SE V +CA Q D+C Q
Sbjct: 172 YYGSE-----VTTKMLCAADPQWKTDSC------------------------------QG 196
Query: 337 DSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
DSGGPL+ + G+VS G GCA PG+YTR++ ++ WI
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 6 LQKVALSVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
L+ + ++S++ CQ +Y SE V +CA Q D+C DSGGPL+
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSE-----VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG 208
Query: 64 STQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 209 RMTLTGIVSWGRG 221
>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9
Angstroms Resolution
Length = 226
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 117/278 (42%), Gaps = 64/278 (23%)
Query: 117 IVGGLAANPGEFPWIVSLK----RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQIN 172
I+GG + P P++ L+ FCGG +I +++TAAHC + I
Sbjct: 1 IIGGTESKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHC--------AGRSIT 52
Query: 173 VTLKEHDLSRPSIS--TVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS 230
VTL H+++ + + V++ HP ++ S+ ++DI LL+L + + PS
Sbjct: 53 VTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPS 112
Query: 231 GSLDYSE--QSVTVAGWGWTNE-NPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINV 287
++ + VAGWG T P S+ LQ+V L ++ Q C + +
Sbjct: 113 -QFNFVPPGRMCRVAGWGRTGVLKPG----SDTLQEVKLRLMDPQACSHFRDFD------ 161
Query: 288 KESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGA 347
Q+C G+ + K A + DSGGPL+ G
Sbjct: 162 HNLQLCVGNPRKTKSA------------------------------FKGDSGGPLLCAGV 191
Query: 348 ESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+VS G A+P P ++TR++ Y WI+ L
Sbjct: 192 AQ----GIVSYGRSDAKP--PAVFTRISHYRPWINQIL 223
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
S+ LQ+V L ++ Q C + + Q+C G+ + K A DSGGPL+ G
Sbjct: 138 SDTLQEVKLRLMDPQACSHFRDFD------HNLQLCVGNPRKTKSAFKGDSGGPLLCAGV 191
Query: 63 ESTQVIGLVSTG 74
G+VS G
Sbjct: 192 AQ----GIVSYG 199
>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI7|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI9|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
Length = 245
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 118/285 (41%), Gaps = 64/285 (22%)
Query: 117 IVGGLAANPGEFPWIVSL-KRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSP------ 165
I+GG PW ++ +RH G + CGG+++ W+++A HC + P
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 166 LSASQINVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSF--NNDIALLELT----RSIQW 219
L S++N + V ++ H +S + +NDIALL++ R Q
Sbjct: 61 LGRSRLNSNTQGE-------MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIRPACLPSGSLD-YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQA-- 276
S I+ CLPS D S + G+G E + L+ + ++S++ CQ
Sbjct: 114 SRTIQTICLPSMYNDPQFGTSCEITGFG--KEASTDYLYPEQLKMTVVKLISHRECQQPH 171
Query: 277 WYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQA 336
+Y SE V +CA Q D+C Q
Sbjct: 172 YYGSE-----VTTKMLCAADPQWKTDSC------------------------------QG 196
Query: 337 DSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
DSGGPL+ + G+VS G GCA PG+YTR++ ++ WI
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 6 LQKVALSVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
L+ + ++S++ CQ +Y SE V +CA Q D+C DSGGPL+
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSE-----VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG 208
Query: 64 STQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 209 RMTLTGIVSWGRG 221
>pdb|1KDQ|A Chain A, Crystal Structure Analysis Of The Mutant S189d Rat
Chymotrypsin
Length = 131
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 117 IVGGLAANPGEFPWIVSLK-RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
IV G A PG +PW VSL+ + G HFCGG++I E W+VTAAHC + A + +
Sbjct: 1 IVNGEDAIPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHCGVKTSDVVVAGEFDQGS 60
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
E + I + + ++ +P + + NDI LL+L Q+S+ + LP+ D+
Sbjct: 61 DEEN-----IQVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVSLPNVDDDF 115
Query: 236 SEQSV-TVAGWGWT 248
+V GWG T
Sbjct: 116 PPGTVCATTGWGKT 129
>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With
2- Amino-5-Hydroxy-Benzimidazole
Length = 245
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 118/285 (41%), Gaps = 64/285 (22%)
Query: 117 IVGGLAANPGEFPWIVSL-KRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSP------ 165
I+GG PW ++ +RH G + CGG+++ W+++A HC + P
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 166 LSASQINVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSF--NNDIALLELT----RSIQW 219
L S++N + V ++ H +S + +NDIALL++ R Q
Sbjct: 61 LGRSRLNSNTQGE-------MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIRPACLPSGSLD-YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQA-- 276
S I+ LPS D S + G+G EN + L+ + ++S++ CQ
Sbjct: 114 SRTIQTIALPSMYNDPQFGTSCEITGFG--KENSTDYLYPEQLKMTVVKLISHRECQQPH 171
Query: 277 WYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQA 336
+Y SE V +CA Q D+C Q
Sbjct: 172 YYGSE-----VTTKMLCAADPQWKTDSC------------------------------QG 196
Query: 337 DSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
DSGGPL+ + G+VS G GCA PG+YTR++ ++ WI
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 6 LQKVALSVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
L+ + ++S++ CQ +Y SE V +CA Q D+C DSGGPL+
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSE-----VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG 208
Query: 64 STQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 209 RMTLTGIVSWGRG 221
>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFQ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFS|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFZ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFZ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AG1|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|B Chain B, Human Chymase - Fynomer Complex
Length = 226
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 116/284 (40%), Gaps = 76/284 (26%)
Query: 117 IVGGLAANPGEFPWIVSLK----RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQIN 172
I+GG P P++ L+ FCGG +I +++TAAHC + I
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHC--------AGRSIT 52
Query: 173 VTLKEHDLSRPSIS--TVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS 230
VTL H+++ + + V++ HP ++ S+ ++DI LL+L + L
Sbjct: 53 VTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLT-------LAV 105
Query: 231 GSLDYSEQ--------SVTVAGWGWTNE-NPSQGRRSNILQKVALSVVSNQVCQAWYQSE 281
G+L + Q VAGWG T P S+ LQ+V L ++ Q C + +
Sbjct: 106 GTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPG----SDTLQEVKLRLMDPQACSHFRDFD 161
Query: 282 GKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGP 341
Q+C G+ + K A + DSGGP
Sbjct: 162 ------HNLQLCVGNPRKTKSA------------------------------FKGDSGGP 185
Query: 342 LMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
L+ G G+VS G A+P P ++TR++ Y WI+ L
Sbjct: 186 LLCAGVAQ----GIVSYGRSDAKP--PAVFTRISHYRPWINQIL 223
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
S+ LQ+V L ++ Q C + + Q+C G+ + K A DSGGPL+ G
Sbjct: 138 SDTLQEVKLRLMDPQACSHFRDFD------HNLQLCVGNPRKTKSAFKGDSGGPLLCAGV 191
Query: 63 ESTQVIGLVSTG 74
G+VS G
Sbjct: 192 AQ----GIVSYG 199
>pdb|1AU8|A Chain A, Human Cathepsin G
pdb|1T32|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|1CGH|A Chain A, Human Cathepsin G
Length = 224
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 120/275 (43%), Gaps = 59/275 (21%)
Query: 117 IVGGLAANPGEFPWIVSLKRH---GGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
I+GG + P P++ L+ G CGG ++ E +++TAAHC S INV
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCW--------GSNINV 52
Query: 174 TLKEHDLSRPSIST--VPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSG 231
TL H++ R + + R + HP ++ + NDI LL+L+R ++ + + P LP
Sbjct: 53 TLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRA 112
Query: 232 SLDYSEQSV-TVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKES 290
++ TVAGWG S R ++ L++V L V ++ C + S +
Sbjct: 113 QEGLRPGTLCTVAGWGRV----SMRRGTDTLREVQLRVQRDRQCLRIFGSYDPR-----R 163
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
Q+C G + K A + DSGGPL+ +
Sbjct: 164 QICVGDRRERKAA------------------------------FKGDSGGPLLC----NN 189
Query: 351 QVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+VS G P P ++TR++ ++ WI T+
Sbjct: 190 VAHGIVSYGKSSGVP--PEVFTRVSSFLPWIRTTM 222
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLM 58
R ++ L++V L V ++ C + S + Q+C G + K A DSGGPL+
Sbjct: 134 RGTDTLREVQLRVQRDRQCLRIFGSYDPR-----RQICVGDRRERKAAFKGDSGGPLL 186
>pdb|1KYN|B Chain B, Cathepsin-G
pdb|1KYN|A Chain A, Cathepsin-G
Length = 235
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 120/275 (43%), Gaps = 59/275 (21%)
Query: 117 IVGGLAANPGEFPWIVSLKRH---GGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
I+GG + P P++ L+ G CGG ++ E +++TAAHC S INV
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCW--------GSNINV 52
Query: 174 TLKEHDLSRPSIST--VPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSG 231
TL H++ R + + R + HP ++ + NDI LL+L+R ++ + + P LP
Sbjct: 53 TLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRA 112
Query: 232 SLDYSEQSV-TVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKES 290
++ TVAGWG S R ++ L++V L V ++ C + S +
Sbjct: 113 QEGLRPGTLCTVAGWGRV----SMRRGTDTLREVQLRVQRDRQCLRIFGSYDPR-----R 163
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
Q+C G + K A + DSGGPL+ +
Sbjct: 164 QICVGDRRERKAA------------------------------FKGDSGGPLLC----NN 189
Query: 351 QVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
G+VS G P P ++TR++ ++ WI T+
Sbjct: 190 VAHGIVSYGKSSGVP--PEVFTRVSSFLPWIRTTM 222
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLM 58
R ++ L++V L V ++ C + S + Q+C G + K A DSGGPL+
Sbjct: 134 RGTDTLREVQLRVQRDRQCLRIFGSYDPR-----RQICVGDRRERKAAFKGDSGGPLL 186
>pdb|2JET|B Chain B, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g)
Chymotrypsin
Length = 128
Score = 77.8 bits (190), Expect = 9e-15, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 7/131 (5%)
Query: 120 GLAANPGEFPWIVSLK-RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLKEH 178
G A PG +PW VSL+ + G HFCGG++I E W+VTAAHC + A + + E
Sbjct: 1 GEDAIPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHCGVKTSDVVVAGEFDQGSDEE 60
Query: 179 DLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDYSEQ 238
+ I + + ++ +P + + NDI LL+L Q+S+ + CLP+ D+
Sbjct: 61 N-----IQVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVCLPNVDDDFPPG 115
Query: 239 SV-TVAGWGWT 248
+V GWG T
Sbjct: 116 TVCATTGWGKT 126
>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|1HYL|B Chain B, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|2HLC|A Chain A, Hl Collagenase Structure At 1.7a Resolution
pdb|2HLC|B Chain B, Hl Collagenase Structure At 1.7a Resolution
Length = 230
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 125/274 (45%), Gaps = 61/274 (22%)
Query: 117 IVGGLAANPGEFPW----IVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQIN 172
I+ G A G FP+ ++L+ +CGG++I +WI+TAAHC+ + S
Sbjct: 1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAVSV------- 53
Query: 173 VTLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSG- 231
V + + V RI+ H + ++ ND+AL+++ ++++D I+P LPSG
Sbjct: 54 VVYLGSAVQYEGEAVVNSERIISHSMFNPDTYLNDVALIKIPH-VEYTDNIQPIRLPSGE 112
Query: 232 SLDYSEQSV--TVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKE 289
L+ +++ TV+GWG +N + + ILQ V+ N C Y + E
Sbjct: 113 ELNNKFENIWATVSGWGQSNTD------TVILQYTYNLVIDNDRCAQEYPPG----IIVE 162
Query: 290 SQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAES 349
S +C G GK C+ DSGGP +L ++
Sbjct: 163 STIC-GDTSDGKSPCF------------------------------GDSGGPFVL--SDK 189
Query: 350 TQVIGLVS--TGIGCARPRLPGLYTRLTRYIGWI 381
+IG+VS +G GC + P ++R+T Y+ WI
Sbjct: 190 NLLIGVVSFVSGAGCESGK-PVGFSRVTSYMDWI 222
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 5 ILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES 64
ILQ V+ N C Y + ES +C G GK C+ DSGGP +L ++
Sbjct: 137 ILQYTYNLVIDNDRCAQEYPPG----IIVESTIC-GDTSDGKSPCFGDSGGPFVL--SDK 189
Query: 65 TQVIGLVS 72
+IG+VS
Sbjct: 190 NLLIGVVS 197
>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed
By Crystal Structure Of Human Urokinase-Type Plasminogen
Activator Complexed With A Cyclic Peptidyl Inhibitor,
Upain-1
pdb|2O8T|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145Q) IN COMPLEX WITH
Inhibitors
pdb|3KGP|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KHV|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KID|U Chain U, The Crystal Structures Of 2-Aminobenzothiazole-Based
Inhibitors In Complexes With Urokinase-Type Plasminogen
Activator
pdb|3M61|U Chain U, Crystal Structure Of Complex Of Urokinase And A Upain-1
Variant(W3a) In Ph4.6 Condition
pdb|3OX7|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph4.6
pdb|3OY5|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph7.4
pdb|3OY6|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh036 At Ph4.6
pdb|3QN7|A Chain A, Potent And Selective Bicyclic Peptide Inhibitor (Uk18) Of
Human Urokinase-Type Plasminogen Activator(Upa)
Length = 253
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 117/285 (41%), Gaps = 64/285 (22%)
Query: 117 IVGGLAANPGEFPWIVSL-KRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSP------ 165
I+GG PW ++ +RH G + CGG++I W+++A HC + P
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 166 LSASQINVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSF--NNDIALLELT----RSIQW 219
L S++N + V ++ H +S + +NDIALL++ R Q
Sbjct: 61 LGRSRLNSNTQGE-------MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIRPACLPSGSLD-YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQA-- 276
S I+ LPS D S + G+G E + L+ + ++S++ CQ
Sbjct: 114 SRTIQTIALPSMYNDPQFGTSCEITGFG--KEQSTDYLYPEQLKMTVVKLISHRECQQPH 171
Query: 277 WYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQA 336
+Y SE V +CA Q D+C Q
Sbjct: 172 YYGSE-----VTTKMLCAADPQWKTDSC------------------------------QG 196
Query: 337 DSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
DSGGPL+ + G+VS G GCA PG+YTR++ ++ WI
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 6 LQKVALSVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
L+ + ++S++ CQ +Y SE V +CA Q D+C DSGGPL+
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSE-----VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG 208
Query: 64 STQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 209 RMTLTGIVSWGRG 221
>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU8|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU9|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUB|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUC|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUD|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUE|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUF|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUG|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUH|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUI|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUJ|A Chain A, Crystal Structure Of The Urokinase
pdb|4DVA|U Chain U, The Crystal Structure Of Human Urokinase-type Plasminogen
Activator Catalytic Domain
pdb|4DW2|U Chain U, The Crystal Structure Of Upa In Complex With The Fab
Fragment Of Mab- 112
Length = 246
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 117/285 (41%), Gaps = 64/285 (22%)
Query: 117 IVGGLAANPGEFPWIVSL-KRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSP------ 165
I+GG PW ++ +RH G + CGG++I W+++A HC + P
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 166 LSASQINVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSF--NNDIALLELT----RSIQW 219
L S++N + V ++ H +S + +NDIALL++ R Q
Sbjct: 61 LGRSRLNSNTQGE-------MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIRPACLPSGSLD-YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQA-- 276
S I+ LPS D S + G+G E + L+ + ++S++ CQ
Sbjct: 114 SRTIQTIALPSMYNDPQFGTSCEITGFG--KEQSTDYLYPEQLKMTVVKLISHRECQQPH 171
Query: 277 WYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQA 336
+Y SE V +CA Q D+C Q
Sbjct: 172 YYGSE-----VTTKMLCAADPQWKTDSC------------------------------QG 196
Query: 337 DSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
DSGGPL+ + G+VS G GCA PG+YTR++ ++ WI
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 6 LQKVALSVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
L+ + ++S++ CQ +Y SE V +CA Q D+C DSGGPL+
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSE-----VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG 208
Query: 64 STQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 209 RMTLTGIVSWGRG 221
>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom
Thrombin- Like Enzyme From Agkistrodon Halys
Length = 238
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 121/276 (43%), Gaps = 55/276 (19%)
Query: 117 IVGGLAANPGEFPWIVSL--KRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVT 174
I+GG N E ++V+L R FCGGT+I+++W++TAAHC +
Sbjct: 1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHC--------DRKNFRIK 52
Query: 175 LKEHDLSRPSI---STVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSG 231
L H P+ + VP + S + + ++ DI L+ L ++ S I A
Sbjct: 53 LGMHSKKVPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHI--APFSLP 110
Query: 232 SLDYSEQSVT-VAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKES 290
S S SV + GWG +P++G ++ V ++++ ++C+A Y ++
Sbjct: 111 SSPPSVGSVCRIMGWGRI--SPTEGTYPDVPHCVNINLLEYEMCRAPYPE--FELPATSR 166
Query: 291 QMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAEST 350
+CAG +GGKD C + DSGGPL+ G
Sbjct: 167 TLCAGILEGGKDTC------------------------------KGDSGGPLICNG---- 192
Query: 351 QVIGLVSTGIG-CARPRLPGLYTRLTRYIGWISDTL 385
Q G+ S G CA+P P YT++ ++ WI + +
Sbjct: 193 QFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENII 228
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 9 VALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVI 68
V ++++ ++C+A Y ++ +CAG +GGKD C DSGGPL+ G Q
Sbjct: 142 VNINLLEYEMCRAPYPE--FELPATSRTLCAGILEGGKDTCKGDSGGPLICNG----QFQ 195
Query: 69 GLVSTG 74
G+ S G
Sbjct: 196 GIASWG 201
>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom
pdb|1BQY|B Chain B, Plasminogen Activator (tsv-pa) From Snake Venom
Length = 234
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 111/271 (40%), Gaps = 49/271 (18%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
+ GG N E +V L G CGGT+I++ W+VTAAHC N L L
Sbjct: 1 VFGGDECNINEHRSLVVLFNSNGFLCGGTLINQDWVVTAAHCDSNNFQLLFGVHSKKILN 60
Query: 177 EHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDYS 236
E + +R P + + DI L++L S+ S+ I A L S S
Sbjct: 61 EDEQTRD-----PKEKFFCPNRKKDDEVDKDIMLIKLDSSVSNSEHI--APLSLPSSPPS 113
Query: 237 EQSVT-VAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAG 295
SV + GWG T P++ ++ ++++ + VC+ Y V + +CAG
Sbjct: 114 VGSVCRIMGWGKT--IPTKEIYPDVPHCANINILDHAVCRTAYSWR----QVANTTLCAG 167
Query: 296 HEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGL 355
QGG+D C DSGGPL+ G G+
Sbjct: 168 ILQGGRDTC------------------------------HFDSGGPLICNGIFQ----GI 193
Query: 356 VS-TGIGCARPRLPGLYTRLTRYIGWISDTL 385
VS G C +P PG+YT++ Y+ WI +
Sbjct: 194 VSWGGHPCGQPGEPGVYTKVFDYLDWIKSII 224
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 11 LSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLG 61
++++ + VC+ Y V + +CAG QGG+D C DSGGPL+ G
Sbjct: 142 INILDHAVCRTAYSWR----QVANTTLCAGILQGGRDTCHFDSGGPLICNG 188
>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Complement C1s Protease
Length = 333
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 119/298 (39%), Gaps = 52/298 (17%)
Query: 99 PIAGVPCGRSLASRRTGKIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHC 158
P+ GVP R + +I+GG A+ FPW V + GG +I+E W++TAAH
Sbjct: 68 PVCGVP--REPFEEKQ-RIIGGSDADIKNFPWQVFFDNP---WAGGALINEYWVLTAAHV 121
Query: 159 LCNGPSPL-----SASQINVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLEL 213
+ P ++ Q + K L+ + P +++ P ++F+NDIAL+ L
Sbjct: 122 VEGNREPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGR-TNFDNDIALVRL 180
Query: 214 TRSIQWSDLIRPACLPSGSLDYSEQSVT---VAGWGWTNENPSQGRRSNILQKVALSVVS 270
++ + P CLP S DY+ ++GWG T + R VA
Sbjct: 181 KDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRDRAVRLKAARLPVAPLRKC 240
Query: 271 NQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHW 330
+V ++ + + +CAG E+ G D+C
Sbjct: 241 KEVKVEKPTADAEAYVFTPNMICAGGEK-GMDSC-------------------------- 273
Query: 331 DPPLQADSGGPLMLLGAESTQVI---GLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+ DSGG + GLVS G C GLYTR+ Y+ WI T+
Sbjct: 274 ----KGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCG---TYGLYTRVKNYVDWIMKTM 324
>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|2O8W|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|3PB1|E Chain E, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 253
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 117/285 (41%), Gaps = 64/285 (22%)
Query: 117 IVGGLAANPGEFPWIVSL-KRHGG----HFCGGTIIHEQWIVTAAHCLCNGPSP------ 165
I+GG PW ++ +RH G + CGG++I W+++A HC + P
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 166 LSASQINVTLKEHDLSRPSISTVPVLRIMFHPSHSCSSF--NNDIALLELT----RSIQW 219
L S++N + V ++ H +S + +NDIALL++ R Q
Sbjct: 61 LGRSRLNSNTQGE-------MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIRPACLPSGSLD-YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQA-- 276
S I+ LPS D S + G+G E + L+ + ++S++ CQ
Sbjct: 114 SRTIQTIALPSMYNDPQFGTSCEITGFG--KEQSTDYLYPEQLKMTVVKLISHRECQQPH 171
Query: 277 WYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQA 336
+Y SE V +CA Q D+C Q
Sbjct: 172 YYGSE-----VTTKMLCAADPQWKTDSC------------------------------QG 196
Query: 337 DSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
D+GGPL+ + G+VS G GCA PG+YTR++ ++ WI
Sbjct: 197 DAGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 6 LQKVALSVVSNQVCQA--WYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
L+ + ++S++ CQ +Y SE V +CA Q D+C D+GGPL+
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSE-----VTTKMLCAADPQWKTDSCQGDAGGPLVCSLQG 208
Query: 64 STQVIGLVSTGIG 76
+ G+VS G G
Sbjct: 209 RMTLTGIVSWGRG 221
>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin)
pdb|1FUJ|B Chain B, Pr3 (Myeloblastin)
pdb|1FUJ|C Chain C, Pr3 (Myeloblastin)
pdb|1FUJ|D Chain D, Pr3 (Myeloblastin)
Length = 221
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 119/278 (42%), Gaps = 67/278 (24%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGG---HFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV 173
IVGG A P P++ SL+ G HFCGGT+IH +++TAAHCL + P L +NV
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRL----VNV 56
Query: 174 TLKEHDL--SRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSG 231
L H++ P+ V ++ + ++ + NDI L++L+ S + LP
Sbjct: 57 VLGAHNVRTQEPTQQHFSVAQVFLN-NYDAENKLNDILLIQLSSPANLSASVATVQLPQQ 115
Query: 232 SLDYSEQSVTVA-GWGWT--NENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVK 288
+ +A GWG ++ P+Q +LQ++ ++VV+ +
Sbjct: 116 DQPVPHGTQCLAMGWGRVGAHDPPAQ-----VLQELNVTVVT--------------FFCR 156
Query: 289 ESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAE 348
+C P ++G+ + DSGGPL+ G
Sbjct: 157 PHNICT-------------------------FVPRRKAGICF-----GDSGGPLICDGI- 185
Query: 349 STQVIGLVSTGI-GCARPRLPGLYTRLTRYIGWISDTL 385
+ G+ S I GCA P +TR+ Y+ WI TL
Sbjct: 186 ---IQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTL 220
>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
pdb|3RP2|B Chain B, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
Length = 224
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 120/279 (43%), Gaps = 64/279 (22%)
Query: 117 IVGGLAANPGEFPWIVSL----KRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQIN 172
I+GG+ + P P++ L ++ CGG +I Q+++TAAHC +I
Sbjct: 1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHC--------KGREIT 52
Query: 173 VTLKEHDLSR--PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS 230
V L HD+ + + + V + + H S++ +DI LL+L + ++ + + LPS
Sbjct: 53 VILGAHDVRKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPS 112
Query: 231 GSLDYSEQSVT--VAGWGWTN-ENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINV 287
S D+ AGWG T +P+ S L++V L ++ + C + E K
Sbjct: 113 PS-DFIHPGAMCWAAGWGKTGVRDPT----SYTLREVELRIMDEKACVDYRYYEYK---- 163
Query: 288 KESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGA 347
Q+C G +P R DSGGPL+ G
Sbjct: 164 --FQVCVG----------------SPTTLRAA--------------FMGDSGGPLLCAGV 191
Query: 348 ESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTLD 386
G+VS G A+P P ++TR++ Y+ WI+ ++
Sbjct: 192 AH----GIVSYGHPDAKP--PAIFTRVSTYVPWINAVIN 224
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGA 62
S L++V L ++ + C + E K Q+C G + A DSGGPL+ G
Sbjct: 138 SYTLREVELRIMDEKACVDYRYYEYK------FQVCVGSPTTLRAAFMGDSGGPLLCAGV 191
Query: 63 ESTQVIGLVSTG 74
G+VS G
Sbjct: 192 AH----GIVSYG 199
>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 114/270 (42%), Gaps = 55/270 (20%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
++GG + E ++V+ G FCGGT+I+ +W+VTAAHC ++ + L
Sbjct: 1 VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHC--------DSTDFQMQLG 52
Query: 177 EHD---LSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
H L+ + P + + ++ + DI L++L + I S I A L S
Sbjct: 53 VHSKKVLNEDEQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHI--APLSLPSS 110
Query: 234 DYSEQSVT-VAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
S SV + GWG P + ++ ++++ + VCQA Y ++ + +
Sbjct: 111 PPSVGSVCRIMGWGSI--TPVKETFPDVPYCANINLLDHAVCQAGY----PELLAEYRTL 164
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG QGGKD C DSGGPL+ G Q
Sbjct: 165 CAGIVQGGKDTCG------------------------------GDSGGPLICNG----QF 190
Query: 353 IGLVSTGIG-CARPRLPGLYTRLTRYIGWI 381
G+VS G C + PG+YT + Y WI
Sbjct: 191 QGIVSYGAHPCGQGPKPGIYTNVFDYTDWI 220
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 11 LSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGL 70
++++ + VCQA Y ++ + +CAG QGGKD C DSGGPL+ G Q G+
Sbjct: 142 INLLDHAVCQAGY----PELLAEYRTLCAGIVQGGKDTCGGDSGGPLICNG----QFQGI 193
Query: 71 VSTG 74
VS G
Sbjct: 194 VSYG 197
>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 114/270 (42%), Gaps = 55/270 (20%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
++GG + E ++V+ G FCGGT+I+ +W+VTAAHC ++ + L
Sbjct: 1 VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHC--------DSTNFQMQLG 52
Query: 177 EHD---LSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
H L+ + P + + ++ + DI L++L + I S I A L S
Sbjct: 53 VHSKKVLNEDEQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHI--APLSLPSS 110
Query: 234 DYSEQSVT-VAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
S SV + GWG P + ++ ++++ + VCQA Y ++ + +
Sbjct: 111 PPSVGSVCRIMGWGSI--TPVKETFPDVPYCANINLLDHAVCQAGY----PELLAEYRTL 164
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG QGGKD C DSGGPL+ G Q
Sbjct: 165 CAGIVQGGKDTCG------------------------------GDSGGPLICNG----QF 190
Query: 353 IGLVSTGIG-CARPRLPGLYTRLTRYIGWI 381
G+VS G C + PG+YT + Y WI
Sbjct: 191 QGIVSYGAHPCGQGPKPGIYTNVFDYTDWI 220
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 11 LSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGL 70
++++ + VCQA Y ++ + +CAG QGGKD C DSGGPL+ G Q G+
Sbjct: 142 INLLDHAVCQAGY----PELLAEYRTLCAGIVQGGKDTCGGDSGGPLICNG----QFQGI 193
Query: 71 VSTG 74
VS G
Sbjct: 194 VSYG 197
>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1UCY|H Chain H, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|F Chain F, Thrombin:hirudin 51-65 Complex
pdb|1YCP|K Chain K, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 150
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 12/142 (8%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + +
Sbjct: 1 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHS-CSSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R + + +L +I HP ++ + + DIALL+L R I+ SD I P CL
Sbjct: 61 VRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWG 246
P + L ++ V GWG
Sbjct: 121 PDKQTAAKLLHAGFKGRVTGWG 142
>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|B Chain B, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
pdb|2PKS|B Chain B, Thrombin In Complex With Inhibitor
pdb|3PO1|B Chain B, Thrombin In Complex With Benzothiazole Guanidine
Length = 147
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 12/142 (8%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR--PSISTVPVL-RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACL 228
V + +H +R +I + +L +I HP ++ + + DIAL++L + + +SD I P CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 229 P----SGSLDYSEQSVTVAGWG 246
P + SL + V GWG
Sbjct: 121 PDRETAASLLQAGYKGRVTGWG 142
>pdb|1AKS|A Chain A, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
pdb|1UHB|A Chain A, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 125
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 12/134 (8%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC S+I V L
Sbjct: 1 IVGGYTCAANSIPYQVSLNS-GSHFCGGSLINSQWVVSAAHCY--------KSRIQVRLG 51
Query: 177 EH--DLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
EH D+ + + +I+ HP+ + ++ +NDI L++L+ + + LP S
Sbjct: 52 EHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPR-SCA 110
Query: 235 YSEQSVTVAGWGWT 248
+ ++GWG T
Sbjct: 111 AAGTECLISGWGNT 124
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 38/210 (18%)
Query: 116 KIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNG-PSPLSASQINVT 174
+I+GG G FPW + H G T+I+EQW++T A L G + A I T
Sbjct: 102 RIMGGSLDAKGSFPWQAKMISHHNLTSGATLINEQWLLTTAKNLRLGHKNDTKAKDIAPT 161
Query: 175 LKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
L+ L V + +++FHP +S DI L++L + + ++ + P CLPS D
Sbjct: 162 LR---LYVGKKQEVEIEKVIFHPDNSTV----DIGLIKLKQKVPVNERVMPICLPSK--D 212
Query: 235 YSEQSVT--VAGWGWTNENPSQGRRSNI-----LQKVALSVVSNQVCQAWYQSE------ 281
Y + V+GW GR +N+ L+ V L V + C +Y+
Sbjct: 213 YVNVGLVGYVSGW---------GRNANLNFTEHLKYVMLPVADQEKCVQYYEGSTVPEKK 263
Query: 282 ------GKKINVKESQMCAGHEQGGKDACW 305
G + + E CAG + +D C+
Sbjct: 264 TPKSPVGVQPILNEHTFCAGLSKYQEDTCY 293
>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp
pdb|1AE5|A Chain A, Human Heparin Binding Protein
Length = 225
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 12/163 (7%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG A P +FP++ S++ G HFCGG +IH ++++TAA C + +S V L
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVST----VVLG 56
Query: 177 EHDLSRPSISTVPVLRI--MFHPSHSCSSFNNDIALLELTR--SIQWSDLIRPACLPSGS 232
+DL R + I M + ND+ LL+L R ++ S I P L + +
Sbjct: 57 AYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNAT 116
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQ 275
++ + VAGWG S GR S + V ++V C+
Sbjct: 117 VEAGTR-CQVAGWG---SQRSGGRLSRFPRFVNVTVTPEDQCR 155
>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein
(cap37)
Length = 225
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 12/163 (7%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG A P +FP++ S++ G HFCGG +IH ++++TAA C + +S V L
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVST----VVLG 56
Query: 177 EHDLSRPSISTVPVLRI--MFHPSHSCSSFNNDIALLELTR--SIQWSDLIRPACLPSGS 232
+DL R + I M + ND+ LL+L R ++ S I P L + +
Sbjct: 57 AYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNAT 116
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQ 275
++ + VAGWG S GR S + V ++V C+
Sbjct: 117 VEAGTR-CQVAGWG---SQRSGGRLSRFPRFVNVTVTPEDQCR 155
>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A
Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms
Resolution
Length = 218
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 11/157 (7%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG A P +P++VSL+ GGHFCG T+I ++++AAHC+ + ++ + V L
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCV----ANVNVRAVRVVLG 56
Query: 177 EHDLSR--PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
H+LSR P+ V RI F + + NDI +L+L S + ++ A LP+
Sbjct: 57 AHNLSRREPTRQVFAVQRI-FEDGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRR 115
Query: 235 YSEQSVTVA-GWGWTNENPSQGRRSNILQKVALSVVS 270
+A GWG N +++LQ++ ++VV+
Sbjct: 116 LGNGVQCLAMGWGLLGRNRGI---ASVLQELNVTVVT 149
>pdb|1PPG|E Chain E, The Refined 2.3 Angstroms Crystal Structure Of Human
Leukocyte Elastase In A Complex With A Valine
Chloromethyl Ketone Inhibitor
pdb|1H1B|A Chain A, Crystal Structure Of Human Neutrophil Elastase Complexed
With An Inhibitor (Gw475151)
pdb|1H1B|B Chain B, Crystal Structure Of Human Neutrophil Elastase Complexed
With An Inhibitor (Gw475151)
pdb|2Z7F|E Chain E, Crystal Structure Of The Complex Of Human Neutrophil
Elastase With 12SLPI
pdb|3Q76|A Chain A, Structure Of Human Neutrophil Elastase (uncomplexed)
pdb|3Q76|B Chain B, Structure Of Human Neutrophil Elastase (uncomplexed)
pdb|3Q77|A Chain A, Structure Of Human Neutrophil Elastase In Complex With A
Dihydropyrimidone Inhibitor
Length = 218
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 11/157 (7%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG A P +P++VSL+ GGHFCG T+I ++++AAHC+ + ++ + V L
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCV----ANVNVRAVRVVLG 56
Query: 177 EHDLSR--PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
H+LSR P+ V RI F + + NDI +L+L S + ++ A LP+
Sbjct: 57 AHNLSRREPTRQVFAVQRI-FENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRR 115
Query: 235 YSEQSVTVA-GWGWTNENPSQGRRSNILQKVALSVVS 270
+A GWG N +++LQ++ ++VV+
Sbjct: 116 LGNGVQCLAMGWGLLGRNRGI---ASVLQELNVTVVT 149
>pdb|2RG3|A Chain A, Covalent Complex Structure Of Elastase
Length = 218
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 11/157 (7%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG A P +P++VSL+ GGHFCG T+I ++++AAHC+ + ++ + V L
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCV----ANVNVRAVRVVLG 56
Query: 177 EHDLSR--PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
H+LSR P+ V RI F + + NDI +L+L S + ++ A LP+
Sbjct: 57 AHNLSRREPTRQVFAVQRI-FENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRR 115
Query: 235 YSEQSVTVA-GWGWTNENPSQGRRSNILQKVALSVVS 270
+A GWG N +++LQ++ ++VV+
Sbjct: 116 LGNGVQCLAMGWGLLGRNRGI---ASVLQELNVTVVT 149
>pdb|1PPF|E Chain E, X-Ray Crystal Structure Of The Complex Of Human Leukocyte
Elastase (Pmn Elastase) And The Third Domain Of The
Turkey Ovomucoid Inhibitor
Length = 218
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 11/157 (7%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG A P +P++VSL+ GGHFCG T+I ++++AAHC+ + ++ + V L
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCV----ANVNVRAVRVVLG 56
Query: 177 EHDLSR--PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
H+LSR P+ V RI F + + NDI +L+L S + ++ A LP+
Sbjct: 57 AHNLSRREPTRQVFAVQRI-FENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRR 115
Query: 235 YSEQSVTVA-GWGWTNENPSQGRRSNILQKVALSVVS 270
+A GWG N +++LQ++ ++VV+
Sbjct: 116 LGNGVQCLAMGWGLLGRNRGI---ASVLQELNVTVVT 149
>pdb|1B0F|A Chain A, Crystal Structure Of Human Neutrophil Elastase With Mdl
101, 146
Length = 218
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 11/157 (7%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG A P +P++VSL+ GGHFCG T+I ++++AAHC+ + ++ + V L
Sbjct: 1 IVGGRRARPHAWPFMVSLQLAGGHFCGATLIAPNFVMSAAHCV----ANVNVRAVRVVLG 56
Query: 177 EHDLSR--PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
H+LSR P+ V RI F + + NDI +L+L S + ++ A LP+
Sbjct: 57 AHNLSRREPTRQVFAVQRI-FEDGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRR 115
Query: 235 YSEQSVTVA-GWGWTNENPSQGRRSNILQKVALSVVS 270
+A GWG N +++LQ++ ++VV+
Sbjct: 116 LGNGVQCLAMGWGLLGRNRGI---ASVLQELNVTVVT 149
>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin
Length = 234
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 111/273 (40%), Gaps = 53/273 (19%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
++GG N E +V+ G FC GT+I+E+W++TAAHC + + L
Sbjct: 1 VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHC--------DNTNFQMKLG 52
Query: 177 EHD---LSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
H L+ + P + + + + DI L++L + S+ I P LPS
Sbjct: 53 VHSKKVLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPP 112
Query: 234 DYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMC 293
+ GWG P + ++ ++++ + VCQA Y ++ + +C
Sbjct: 113 SVG-SVCHIMGWGSI--TPIKVTYPDVPYCAYINLLDDAVCQAGY----PELLTEYRTLC 165
Query: 294 AGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVI 353
AG +GGKD C DSGGPL+ G Q
Sbjct: 166 AGILEGGKDTCG------------------------------GDSGGPLICNG----QFQ 191
Query: 354 GLVSTGIG-CARPRLPGLYTRLTRYIGWISDTL 385
G+VS G C + PG+YT++ Y WI +
Sbjct: 192 GIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSII 224
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 11 LSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGL 70
++++ + VCQA Y ++ + +CAG +GGKD C DSGGPL+ G Q G+
Sbjct: 142 INLLDDAVCQAGY----PELLTEYRTLCAGILEGGKDTCGGDSGGPLICNG----QFQGI 193
Query: 71 VSTG 74
VS G
Sbjct: 194 VSFG 197
>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Closed-Form)
pdb|3S9B|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Open-Form)
pdb|3S9C|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V In Complex
With The Fragment (Residues 1533-1546) Of Human Factor V
pdb|3SBK|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Ppack-Bound Form)
Length = 234
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 107/277 (38%), Gaps = 61/277 (22%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVT 174
+VGG N E P++V+L C G +I+ +W++TAAHC I +
Sbjct: 1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHC--------DRRNIRIK 52
Query: 175 LKEHD---LSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSG 231
L H + VP + + + + DI L+ L R + +S I P LPS
Sbjct: 53 LGMHSKNIRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSR 112
Query: 232 SLDYSEQSVTVAGWGW--TNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKE 289
S + + GWG T P +NI +V ++ C+ Y +
Sbjct: 113 SRGVGSR-CRIMGWGKISTTTYPDVPHCTNIF------IVKHKWCEPLYPW----VPADS 161
Query: 290 SQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAES 349
+CAG +GG+D C DSGGPL+ G
Sbjct: 162 RTLCAGILKGGRDTC------------------------------HGDSGGPLICNG--- 188
Query: 350 TQVIGLVSTGIG-CARPRLPGLYTRLTRYIGWISDTL 385
++ G+V+ G C + P +YT++ Y WI +
Sbjct: 189 -EMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSII 224
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 11 LSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAESTQVIGL 70
+ +V ++ C+ Y + +CAG +GG+D C DSGGPL+ G ++ G+
Sbjct: 142 IFIVKHKWCEPLYPW----VPADSRTLCAGILKGGRDTCHGDSGGPLICNG----EMHGI 193
Query: 71 VSTG 74
V+ G
Sbjct: 194 VAGG 197
>pdb|1FY1|A Chain A, [r23s,F25e]hbp, A Mutant Of Human Heparin Binding Protein
(Cap37)
Length = 225
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 12/163 (7%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
IVGG A P +FP++ S++ G H CGG +IH ++++TAA C + +S V L
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGSHECGGALIHARFVMTAASCFQSQNPGVST----VVLG 56
Query: 177 EHDLSRPSISTVPVLRI--MFHPSHSCSSFNNDIALLELTR--SIQWSDLIRPACLPSGS 232
+DL R + I M + ND+ LL+L R ++ S I P L + +
Sbjct: 57 AYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNAT 116
Query: 233 LDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQ 275
++ + VAGWG S GR S + V ++V C+
Sbjct: 117 VEAGTR-CQVAGWGSQR---SGGRLSRFPRFVNVTVTPEDQCR 155
>pdb|2RDL|A Chain A, Hamster Chymase 2
pdb|2RDL|B Chain B, Hamster Chymase 2
Length = 226
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 113/283 (39%), Gaps = 74/283 (26%)
Query: 117 IVGGLAANPGEFPWIVSLK--RHGGHF--CGGTIIHEQWIVTAAHCLCNGPSPLSASQIN 172
I+GG P P++ L+ H C G +I +++TAAHC + I
Sbjct: 1 IIGGTECRPHARPYMAYLEIVTPENHLSACSGFLIRRNFVMTAAHC--------AGRSIT 52
Query: 173 VTLKEHD--LSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPS 230
V L H+ + + + V + HP + NDI LL+L + L
Sbjct: 53 VLLGAHNKKVKEDTWQKLEVEKQFPHPKYDDRLVLNDIMLLKLKEKANLT-------LGV 105
Query: 231 GSLDYSEQSVTV--------AGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEG 282
G+L S +S ++ GWG TN N S+ LQ+V + ++ Q C+ +
Sbjct: 106 GTLPISAKSNSIPPGRVCRAVGWGRTNVNEPP---SDTLQEVKMRILDPQACKHFEDFH- 161
Query: 283 KKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPL 342
+E Q+C G+ + ++ VY + DSGGPL
Sbjct: 162 -----QEPQLCVGNPKKIRN-----------------VY-------------KGDSGGPL 186
Query: 343 MLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGWISDTL 385
+ G G+ S + A+P P ++TR++ Y WI+ L
Sbjct: 187 LCAGIAQ----GIASYVLRNAKP--PSVFTRISHYRPWINKIL 223
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLG 61
S+ LQ+V + ++ Q C+ + +E Q+C G+ + ++ DSGGPL+ G
Sbjct: 138 SDTLQEVKMRILDPQACKHFEDFH------QEPQLCVGNPKKIRNVYKGDSGGPLLCAG 190
>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal
Plasma
Length = 237
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 56/280 (20%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHF-CGGTIIHEQWIVTAAHCLCN------GPSPLSAS 169
I+GG PW V++ H GHF CGG ++H QW++TAAHC+ + G LS
Sbjct: 1 IIGGWECEKHSKPWQVAV-YHQGHFQCGGVLVHPQWVLTAAHCMSDDYQIWLGRHNLSKD 59
Query: 170 QINVTLKE--HDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPAC 227
+ + P + + P S +D+ LL L + + +D ++
Sbjct: 60 EDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDIS---HDLMLLRLAQPARITDAVKILD 116
Query: 228 LPSGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINV 287
LP+ T +GWG + ++G S LQ V L + SN+ C Y + +
Sbjct: 117 LPTQEPKLGSTCYT-SGWGLISTFTNRG--SGTLQCVELRLQSNEKCARAYPEK-----M 168
Query: 288 KESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGA 347
E +CA H C DSGG L+ G
Sbjct: 169 TEFVLCATHRDDSGSICL------------------------------GDSGGALICDGV 198
Query: 348 ESTQVIGLVSTGIG-CARPRLPGLYTRLTRYIGWISDTLD 386
G+ S G CA ++T++ + WI +T++
Sbjct: 199 ----FQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
R S LQ V L + SN+ C Y + + E +CA H C DSGG L+
Sbjct: 142 RGSGTLQCVELRLQSNEKCARAYPEK-----MTEFVLCATHRDDSGSICLGDSGGALICD 196
Query: 61 GA 62
G
Sbjct: 197 GV 198
>pdb|3H7T|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-D1 (Smipp-S-D1)
pdb|3H7T|B Chain B, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-D1 (Smipp-S-D1)
Length = 235
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 10/183 (5%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLK 176
I+GG ++ + PW V + FCGG+I+ +++TAA C+ +G P S I+
Sbjct: 1 IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCV-DGTKPSDIS-IHYGSS 58
Query: 177 EHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSD-LIRPACLPSGSLD- 234
S+ + + +HP + N+ A++E I+ D + LPS D
Sbjct: 59 YRTTKGTSVMAKKIYIVRYHP----LTMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDP 114
Query: 235 YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCA 294
+ SV V+GWG TN + S L + +VV + C+ Y+ + + CA
Sbjct: 115 EPDTSVLVSGWGSTNFKSLE--YSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCA 172
Query: 295 GHE 297
G E
Sbjct: 173 GGE 175
>pdb|2KAI|B Chain B, Refined 2.5 Angstroms X-Ray Crystal Structure Of The
Complex Formed By Porcine Kallikrein A And The Bovine
Pancreatic Trypsin Inhibitor. Crystallization, Patterson
Search, Structure Determination, Refinement, Structure
And Comparison With Its Components And With The Bovine
Trypsin- Pancreatic Trypsin Inhibitor Complex
pdb|2PKA|B Chain B, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|2PKA|Y Chain Y, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|1HIA|B Chain B, Kallikrein Complexed With Hirustasin
pdb|1HIA|Y Chain Y, Kallikrein Complexed With Hirustasin
Length = 152
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 41/184 (22%)
Query: 203 SFNNDIALLELTRSIQWSDLIRPACLPSGSLDYSEQSVTVAGWGWTNENPSQGRRSNILQ 262
+++D+ LL L + +D ++ LP+ + + +GWG P + +Q
Sbjct: 5 DYSHDLMLLRLQSPAKITDAVKVLELPTQEPELG-STCEASGWGSIEPGPDDFEFPDEIQ 63
Query: 263 KVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYP 322
V L+++ N C ++ V ES +CAG+ GGKD C
Sbjct: 64 CVQLTLLQNTFC-----ADAHPDKVTESMLCAGYLPGGKDTC------------------ 100
Query: 323 SHRSGVHWDPPLQADSGGPLMLLGAESTQVIGLVSTG-IGCARPRLPGLYTRLTRYIGWI 381
DSGGPL+ G G+ S G C P +YT+L Y+ WI
Sbjct: 101 ------------MGDSGGPLICNGMWQ----GITSWGHTPCGSANKPSIYTKLIFYLDWI 144
Query: 382 SDTL 385
DT+
Sbjct: 145 DDTI 148
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLG 61
+Q V L+++ N C ++ V ES +CAG+ GGKD C DSGGPL+ G
Sbjct: 62 IQCVQLTLLQNTFC-----ADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPLICNG 112
>pdb|1EPT|C Chain C, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
pdb|1AKS|B Chain B, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
Length = 98
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 39/126 (30%)
Query: 260 ILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGR 319
+LQ + V+SN C++ Y + + + +C G QGGKD+C
Sbjct: 9 LLQCLKAPVLSNSSCKSSYPGQ-----ITGNMICVGFLQGGKDSC--------------- 48
Query: 320 VYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIG 379
Q DSGGP++ G Q+ G+VS G GCA+ PG+YT++ Y+
Sbjct: 49 ---------------QGDSGGPVVCNG----QLQGIVSWGYGCAQKNKPGVYTKVCNYVN 89
Query: 380 WISDTL 385
WI T+
Sbjct: 90 WIQQTI 95
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 5 ILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAES 64
+LQ + V+SN C++ Y + + + +C G QGGKD+C DSGGP++ G
Sbjct: 9 LLQCLKAPVLSNSSCKSSYPGQ-----ITGNMICVGFLQGGKDSCQGDSGGPVVCNG--- 60
Query: 65 TQVIGLVSTGIG 76
Q+ G+VS G G
Sbjct: 61 -QLQGIVSWGYG 71
>pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
pdb|2ODQ|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
Length = 509
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 118 VGGLAANPGE---FPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVT 174
VG ++AN + PW V++K C G +I +QW++TAAHC +G + S ++NV
Sbjct: 222 VGNMSANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDG-NDHSLWRVNVG 280
Query: 175 L------KEHDLSRPSISTVPVLRIMFHPSHSCSSF-NNDIALLELTRSIQWSDLIRPAC 227
KE + + IS P + + F +DIALL+L + ++ S RP C
Sbjct: 281 DPKSQWGKEFLIEKAVIS--PGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPIC 338
Query: 228 LP 229
LP
Sbjct: 339 LP 340
>pdb|2I6Q|A Chain A, Complement Component C2a
pdb|2I6S|A Chain A, Complement Component C2a
Length = 517
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 118 VGGLAANPGE---FPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVT 174
VG ++AN + PW V++K C G +I +QW++TAAHC +G + S ++NV
Sbjct: 230 VGNMSANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDG-NDHSLWRVNVG 288
Query: 175 L------KEHDLSRPSISTVPVLRIMFHPSHSCSSF-NNDIALLELTRSIQWSDLIRPAC 227
KE + + IS P + + F +DIALL+L + ++ S RP C
Sbjct: 289 DPKSQWGKEFLIEKAVIS--PGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPIC 346
Query: 228 LP 229
LP
Sbjct: 347 LP 348
>pdb|3H7O|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
pdb|3H7O|B Chain B, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
Length = 228
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 119 GGLAANPGEFPWIVSLKRHGGH---FCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
GG + + PW V+++ + G CGG I+ + +++TAAHC+ + I +
Sbjct: 2 GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQ----KPETIVIQY 57
Query: 176 KEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLI-RPACLPSGSLD 234
+ +L + P + ++ + + NDIA+LEL+R ++ L +PA LP ++
Sbjct: 58 ESTNLWEDPGKSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKLP--DIE 115
Query: 235 YSEQS---VTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWY 278
+ ++ V V+G+G + + + + L+ L+VV C+ Y
Sbjct: 116 FRPKTGSDVLVSGYG---DGQTMDPKDHDLKSAQLTVVDLDECRTKY 159
>pdb|1UHB|B Chain B, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 98
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 39/127 (30%)
Query: 259 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARG 318
++LQ + V+S+ C++ Y + + + +C G +GGKD+C
Sbjct: 8 SLLQCLKAPVLSDSSCKSSYPGQ-----ITGNMICVGFLEGGKDSC-------------- 48
Query: 319 RVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYI 378
Q DSGGP++ G Q+ G+VS G GCA+ PG+YT++ Y+
Sbjct: 49 ----------------QGDSGGPVVCNG----QLQGIVSWGYGCAQKNKPGVYTKVCNYV 88
Query: 379 GWISDTL 385
WI T+
Sbjct: 89 NWIQQTI 95
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 9/73 (12%)
Query: 4 NILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAE 63
++LQ + V+S+ C++ Y + + + +C G +GGKD+C DSGGP++ G
Sbjct: 8 SLLQCLKAPVLSDSSCKSSYPGQ-----ITGNMICVGFLEGGKDSCQGDSGGPVVCNG-- 60
Query: 64 STQVIGLVSTGIG 76
Q+ G+VS G G
Sbjct: 61 --QLQGIVSWGYG 71
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 50/255 (19%)
Query: 129 PW---IVSLKRHGGH-FCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLKEHDLSRPS 184
PW I ++ GH C G ++ E +++TAAHC S +++V ++ DL
Sbjct: 460 PWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSI-KVSVGGEKRDLE--- 515
Query: 185 ISTVPVLRIMFHPSHSCSS---------FNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
+ ++FHP+++ + ++ D+AL++L +++ IRP CLP
Sbjct: 516 -----IEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP------ 564
Query: 236 SEQSVTVAGWGWTNENPSQGRR---SNILQKVALSVVSNQVCQAWYQS-EGKKINVKESQ 291
E ++ R + Q+ ++ Q +A + S E KK+ KE
Sbjct: 565 ------------CTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVY 612
Query: 292 MCAGHEQGG--KDACWV---SRQWWTPHVARGRVYPSHRSGVHWDP-PLQADSGGPLMLL 345
+ G ++G +DA + + V R + + DP + DSGGPL++
Sbjct: 613 IKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVH 672
Query: 346 GAESTQVIGLVSTGI 360
+G++S G+
Sbjct: 673 KRSRFIQVGVISWGV 687
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 50/255 (19%)
Query: 129 PW---IVSLKRHGGH-FCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLKEHDLSRPS 184
PW I ++ GH C G ++ E +++TAAHC S +++V ++ DL
Sbjct: 469 PWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSI-KVSVGGEKRDLE--- 524
Query: 185 ISTVPVLRIMFHPSHSCSS---------FNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
+ ++FHP+++ + ++ D+AL++L +++ IRP CLP
Sbjct: 525 -----IEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP------ 573
Query: 236 SEQSVTVAGWGWTNENPSQGRR---SNILQKVALSVVSNQVCQAWYQS-EGKKINVKESQ 291
E ++ R + Q+ ++ Q +A + S E KK+ KE
Sbjct: 574 ------------CTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVY 621
Query: 292 MCAGHEQGG--KDACWV---SRQWWTPHVARGRVYPSHRSGVHWDP-PLQADSGGPLMLL 345
+ G ++G +DA + + V R + + DP + DSGGPL++
Sbjct: 622 IKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVH 681
Query: 346 GAESTQVIGLVSTGI 360
+G++S G+
Sbjct: 682 KRSRFIQVGVISWGV 696
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 50/255 (19%)
Query: 129 PW---IVSLKRHGGH-FCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLKEHDLSRPS 184
PW I ++ GH C G ++ E +++TAAHC S +++V ++ DL
Sbjct: 479 PWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSI-KVSVGGEKRDLE--- 534
Query: 185 ISTVPVLRIMFHPSHSCSS---------FNNDIALLELTRSIQWSDLIRPACLPSGSLDY 235
+ ++FHP+++ + ++ D+AL++L +++ IRP CLP
Sbjct: 535 -----IEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP------ 583
Query: 236 SEQSVTVAGWGWTNENPSQGRR---SNILQKVALSVVSNQVCQAWYQS-EGKKINVKESQ 291
E ++ R + Q+ ++ Q +A + S E KK+ KE
Sbjct: 584 ------------CTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVY 631
Query: 292 MCAGHEQGG--KDACWV---SRQWWTPHVARGRVYPSHRSGVHWDP-PLQADSGGPLMLL 345
+ G ++G +DA + + V R + + DP + DSGGPL++
Sbjct: 632 IKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVH 691
Query: 346 GAESTQVIGLVSTGI 360
+G++S G+
Sbjct: 692 KRSRFIQVGVISWGV 706
>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
pdb|1RS0|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With Di-Isopropyl-Phosphate (Dip)
pdb|1RTK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With 4-Guanidinobenzoic Acid
Length = 497
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 46/242 (19%)
Query: 138 GGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLKEHDLSRPSISTVPVLRIMFHP 197
G C G ++ E +++TAAHC S +++V ++ DL + ++FHP
Sbjct: 240 GHESCMGAVVSEYFVLTAAHCFTVDDKEHSI-KVSVGGEKRDLE--------IEVVLFHP 290
Query: 198 SHSCSS---------FNNDIALLELTRSIQWSDLIRPACLPSGSLDYSEQSVTVAGWGWT 248
+++ + ++ D+AL++L +++ IRP CLP
Sbjct: 291 NYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPC------------------ 332
Query: 249 NENPSQGRR---SNILQKVALSVVSNQVCQAWYQS-EGKKINVKESQMCAGHEQGG--KD 302
E ++ R + Q+ ++ Q +A + S E KK+ KE + G ++G +D
Sbjct: 333 TEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERD 392
Query: 303 ACWV---SRQWWTPHVARGRVYPSHRSGVHWDP-PLQADSGGPLMLLGAESTQVIGLVST 358
A + + V R + + DP + DSGGPL++ +G++S
Sbjct: 393 AQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISW 452
Query: 359 GI 360
G+
Sbjct: 453 GV 454
>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|J Chain J, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|K Chain K, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|L Chain L, C3 Convertase (C3bbb) Stabilized By Scin
Length = 507
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 46/242 (19%)
Query: 138 GGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLKEHDLSRPSISTVPVLRIMFHP 197
G C G ++ E +++TAAHC S +++V ++ DL + ++FHP
Sbjct: 248 GHESCMGAVVSEYFVLTAAHCFTVDDKEHSI-KVSVGGEKRDLE--------IEVVLFHP 298
Query: 198 SHSCSS---------FNNDIALLELTRSIQWSDLIRPACLPSGSLDYSEQSVTVAGWGWT 248
+++ + ++ D+AL++L +++ IRP CLP
Sbjct: 299 NYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP------------------C 340
Query: 249 NENPSQGRR---SNILQKVALSVVSNQVCQAWYQS-EGKKINVKESQMCAGHEQGG--KD 302
E ++ R + Q+ ++ Q +A + S E KK+ KE + G ++G +D
Sbjct: 341 TEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERD 400
Query: 303 ACWV---SRQWWTPHVARGRVYPSHRSGVHWDPPL-QADSGGPLMLLGAESTQVIGLVST 358
A + + V R + + DP + DSGGPL++ +G++S
Sbjct: 401 AQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISW 460
Query: 359 GI 360
G+
Sbjct: 461 GV 462
>pdb|1DLE|A Chain A, Factor B Serine Protease Domain
pdb|1DLE|B Chain B, Factor B Serine Protease Domain
Length = 298
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 46/242 (19%)
Query: 138 GGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLKEHDLSRPSISTVPVLRIMFHP 197
G C G ++ E +++TAAHC S +++V ++ DL + ++FHP
Sbjct: 41 GHESCMGAVVSEYFVLTAAHCFTVDDKEHSI-KVSVGGEKRDLE--------IEVVLFHP 91
Query: 198 SHSCSS---------FNNDIALLELTRSIQWSDLIRPACLPSGSLDYSEQSVTVAGWGWT 248
+++ + ++ D+AL++L +++ IRP CLP
Sbjct: 92 NYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP------------------C 133
Query: 249 NENPSQGRR---SNILQKVALSVVSNQVCQAWYQS-EGKKINVKESQMCAGHEQGG--KD 302
E ++ R + Q+ ++ Q +A + S E KK+ KE + G ++G +D
Sbjct: 134 TEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERD 193
Query: 303 ACWV---SRQWWTPHVARGRVYPSHRSGVHWDP-PLQADSGGPLMLLGAESTQVIGLVST 358
A + + V R + + DP + DSGGPL++ +G++S
Sbjct: 194 AQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISW 253
Query: 359 GI 360
G+
Sbjct: 254 GV 255
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 122 AANPGEFPWIVSLKR-HGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLKEHDL 180
A + + PW V L G FCGG II E +++T A C S N+T+K +
Sbjct: 58 APDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKC--------SLLHRNITVKTY-F 108
Query: 181 SRPSIS--TVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDYSEQ 238
+R S + + + H + + ND++LLEL IQ P C P D++E
Sbjct: 109 NRTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEK--DFAEH 166
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 122 AANPGEFPWIVSLKR-HGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLKEHDL 180
A + + PW V L G FCGG II E +++T A C S N+T+K +
Sbjct: 99 APDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKC--------SLLHRNITVKTY-F 149
Query: 181 SRPSIS--TVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDYSEQ 238
+R S + + + H + + ND++LLEL IQ P C P D++E
Sbjct: 150 NRTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEK--DFAEH 207
>pdb|1EPT|A Chain A, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
Length = 43
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCL 159
IVGG P+ VSL G HFCGG++I+ QW+V+AAHC
Sbjct: 1 IVGGYTCAANSIPYQVSLNS-GSHFCGGSLINSQWVVSAAHCY 42
>pdb|2KAI|A Chain A, Refined 2.5 Angstroms X-Ray Crystal Structure Of The
Complex Formed By Porcine Kallikrein A And The Bovine
Pancreatic Trypsin Inhibitor. Crystallization, Patterson
Search, Structure Determination, Refinement, Structure
And Comparison With Its Components And With The Bovine
Trypsin- Pancreatic Trypsin Inhibitor Complex
pdb|2PKA|A Chain A, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|2PKA|X Chain X, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|1HIA|A Chain A, Kallikrein Complexed With Hirustasin
pdb|1HIA|X Chain X, Kallikrein Complexed With Hirustasin
Length = 80
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHC 158
I+GG PW V++ + CGG +++ +W++TAAHC
Sbjct: 1 IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHC 42
>pdb|1BBR|E Chain E, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1UCY|E Chain E, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|G Chain G, Thrombin:hirudin 51-65 Complex
pdb|1YCP|M Chain M, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 109
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 40/135 (29%)
Query: 257 RSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQG-GK--DACWVSRQWWTP 313
+ ++LQ V L +V VC+A +I + ++ CAG++ G GK DAC
Sbjct: 6 QPSVLQVVNLPLVERPVCKA-----STRIRITDNMFCAGYKPGEGKRGDAC--------- 51
Query: 314 HVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLY 371
+ DSGGP ++ + + +G+VS G GC R G Y
Sbjct: 52 ---------------------EGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFY 90
Query: 372 TRLTRYIGWISDTLD 386
T + R WI +D
Sbjct: 91 THVFRLKKWIQKVID 105
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 2 RSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQG-GK--DACWADSGGPLM 58
+ ++LQ V L +V VC+A +I + ++ CAG++ G GK DAC DSGGP +
Sbjct: 6 QPSVLQVVNLPLVERPVCKA-----STRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFV 60
Query: 59 LLGAESTQ--VIGLVSTGIG 76
+ + + +G+VS G G
Sbjct: 61 MKSPYNNRWYQMGIVSWGEG 80
>pdb|2HNT|C Chain C, Crystallographic Structure Of Human Gamma-Thrombin
Length = 70
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 117 IVGGLAANPGEFPWIVSLKRHGGH--FCGGTIIHEQWIVTAAHCLCNGP--SPLSASQIN 172
IV G A G PW V L R CG ++I ++W++TAAHCL P + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 173 VTLKEHDLSR 182
V + +H +R
Sbjct: 61 VRIGKHSRTR 70
>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|G Chain G, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|C Chain C, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|H Chain H, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|C Chain C, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|H Chain H, Bovine Chymotrypsin Complexed To Bpti
pdb|1VGC|C Chain C, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|2VGC|C Chain C, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|3VGC|C Chain C, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|C Chain C, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|C Chain C, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Alpha-Chymotrypsin
pdb|1GG6|C Chain C, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The Active
Site
pdb|1GGD|C Chain C, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|C Chain C, Crystal Structure Of A Complex Between Bovine Chymotrypsin
And Ecotin
pdb|1YPH|E Chain E, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|F Chain F, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|C Chain C, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|G Chain G, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|C Chain C, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|G Chain G, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|G Chain G, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|G Chain G, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|G Chain G, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|G Chain G, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|G Chain G, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|G Chain G, Crystal And Molecular Structures Of The Complex Of Alpha-
Chymotrypsin With Its Inhibitor Turkey Ovomucoid Third
Domain At 1.8 Angstroms Resolution
pdb|1GHA|G Chain G, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|G Chain G, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|G Chain G, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|G Chain G, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To pH
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|C Chain C, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|4CHA|G Chain G, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|5CHA|C Chain C, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|G Chain G, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|C Chain C, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|G Chain G, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|G Chain G, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin With
Its Own Autolysis Products
pdb|3BG4|C Chain C, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An Elastase-Specific
Inhibitor
pdb|1GCT|C Chain C, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct Of
Gamma- Chymotrypsin?
pdb|2GCT|C Chain C, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To Ph
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|G Chain G, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|C Chain C, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|C Chain C, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
Length = 97
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 37/125 (29%)
Query: 261 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRV 320
LQ+ +L ++SN C+ ++ ++ +K++ +CAG G +C
Sbjct: 7 LQQASLPLLSNTNCKKYWGTK-----IKDAMICAGAS--GVSSC---------------- 43
Query: 321 YPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGW 380
DSGGPL+ + ++G+VS G PG+Y R+T + W
Sbjct: 44 --------------MGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNW 89
Query: 381 ISDTL 385
+ TL
Sbjct: 90 VQQTL 94
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
LQ+ +L ++SN C+ ++ ++ +K++ +CAG G +C DSGGPL+ +
Sbjct: 7 LQQASLPLLSNTNCKKYWGTK-----IKDAMICAGAS--GVSSCMGDSGGPLVCKKNGAW 59
Query: 66 QVIGLVSTG 74
++G+VS G
Sbjct: 60 TLVGIVSWG 68
>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|3RU4|E Chain E, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 96
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 37/125 (29%)
Query: 261 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRV 320
LQ+ +L ++SN C+ ++ ++ +K++ +CAG G +C
Sbjct: 6 LQQASLPLLSNTNCKKYWGTK-----IKDAMICAGAS--GVSSC---------------- 42
Query: 321 YPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGW 380
DSGGPL+ + ++G+VS G PG+Y R+T + W
Sbjct: 43 --------------MGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNW 88
Query: 381 ISDTL 385
+ TL
Sbjct: 89 VQQTL 93
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
LQ+ +L ++SN C+ ++ ++ +K++ +CAG G +C DSGGPL+ +
Sbjct: 6 LQQASLPLLSNTNCKKYWGTK-----IKDAMICAGAS--GVSSCMGDSGGPLVCKKNGAW 58
Query: 66 QVIGLVSTG 74
++G+VS G
Sbjct: 59 TLVGIVSWG 67
>pdb|2HNT|F Chain F, Crystallographic Structure Of Human Gamma-Thrombin
pdb|1BHX|F Chain F, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|C Chain C, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
Length = 105
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 40/135 (29%)
Query: 257 RSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTP 313
+ ++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC
Sbjct: 2 QPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDAC--------- 47
Query: 314 HVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLY 371
+ DSGGP ++ + + +G+VS G GC R G Y
Sbjct: 48 ---------------------EGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY 86
Query: 372 TRLTRYIGWISDTLD 386
T + R WI +D
Sbjct: 87 THVFRLKKWIQKVID 101
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 2 RSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLM 58
+ ++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP +
Sbjct: 2 QPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV 56
Query: 59 LLGAESTQ--VIGLVSTGIG 76
+ + + +G+VS G G
Sbjct: 57 MKSPFNNRWYQMGIVSWGEG 76
>pdb|2PKS|C Chain C, Thrombin In Complex With Inhibitor
pdb|3PO1|C Chain C, Thrombin In Complex With Benzothiazole Guanidine
Length = 102
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 40/135 (29%)
Query: 257 RSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWVSRQWWTP 313
+ ++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC
Sbjct: 2 QPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDAC--------- 47
Query: 314 HVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQ--VIGLVSTGIGCARPRLPGLY 371
+ DSGGP ++ + + +G+VS G GC R G Y
Sbjct: 48 ---------------------EGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY 86
Query: 372 TRLTRYIGWISDTLD 386
T + R WI +D
Sbjct: 87 THVFRLKKWIQKVID 101
Score = 37.4 bits (85), Expect = 0.013, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 2 RSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGH--EQGGK-DACWADSGGPLM 58
+ ++LQ V L +V VC+ + +I + ++ CAG+ ++G + DAC DSGGP +
Sbjct: 2 QPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV 56
Query: 59 LLGAESTQ--VIGLVSTGIG 76
+ + + +G+VS G G
Sbjct: 57 MKSPFNNRWYQMGIVSWGEG 76
>pdb|2HNT|E Chain E, Crystallographic Structure Of Human Gamma-Thrombin
Length = 81
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 192 RIMFHPSHSC-SSFNNDIALLELTRSIQWSDLIRPACLP----SGSLDYSEQSVTVAGWG 246
+I HP ++ + + DIAL++L + + +SD I P CLP + SL + V GWG
Sbjct: 10 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 69
>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g)
Chymotrypsin
Length = 99
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 37/128 (28%)
Query: 261 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRV 320
LQ+ AL +VS C+ +S G KI + CAG G D+C
Sbjct: 9 LQQAALPIVSEADCK---KSWGSKIT--DVMTCAGAS--GVDSC---------------- 45
Query: 321 YPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGW 380
DSGGPL+ + G+VS G G PG+Y+R+T + W
Sbjct: 46 --------------MGDSGGPLVCQKDGVWTLAGIVSWGSGVCSTSTPGVYSRVTALMPW 91
Query: 381 ISDTLDIH 388
+ L+ +
Sbjct: 92 VQQILEAN 99
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
LQ+ AL +VS C+ +S G KI + CAG G D+C DSGGPL+
Sbjct: 9 LQQAALPIVSEADCK---KSWGSKIT--DVMTCAGAS--GVDSCMGDSGGPLVCQKDGVW 61
Query: 66 QVIGLVSTGIG 76
+ G+VS G G
Sbjct: 62 TLAGIVSWGSG 72
>pdb|1KDQ|B Chain B, Crystal Structure Analysis Of The Mutant S189d Rat
Chymotrypsin
Length = 99
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 37/128 (28%)
Query: 261 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRV 320
LQ+ AL +VS C+ +S G KI + CAG G D+C
Sbjct: 9 LQQAALPIVSEADCK---KSWGSKIT--DVMTCAGAS--GVDSC---------------- 45
Query: 321 YPSHRSGVHWDPPLQADSGGPLMLLGAESTQVIGLVSTGIGCARPRLPGLYTRLTRYIGW 380
DSGGPL+ + G+VS G G P +Y+R+T + W
Sbjct: 46 --------------MGDSGGPLVCQKDGVWTLAGIVSWGSGVCSTSTPAVYSRVTALMPW 91
Query: 381 ISDTLDIH 388
+ L+ +
Sbjct: 92 VQQILEAN 99
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 6 LQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLLGAEST 65
LQ+ AL +VS C+ +S G KI + CAG G D+C DSGGPL+
Sbjct: 9 LQQAALPIVSEADCK---KSWGSKIT--DVMTCAGAS--GVDSCMGDSGGPLVCQKDGVW 61
Query: 66 QVIGLVSTGIG 76
+ G+VS G G
Sbjct: 62 TLAGIVSWGSG 72
>pdb|1EPT|B Chain B, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
Length = 82
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 169 SQINVTLKEH--DLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPA 226
S+I V L EH D+ + + +I+ HP+ + ++ +NDI L++L+ + +
Sbjct: 1 SRIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATV 60
Query: 227 CLPSGSLDYSEQSVTVAGWGWT 248
LP S + ++GWG T
Sbjct: 61 SLPR-SCAAAGTECLISGWGNT 81
>pdb|1MOX|A Chain A, Crystal Structure Of Human Epidermal Growth Factor
Receptor (Residues 1-501) In Complex With Tgf-Alpha
pdb|1MOX|B Chain B, Crystal Structure Of Human Epidermal Growth Factor
Receptor (Residues 1-501) In Complex With Tgf-Alpha
Length = 501
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 175 LKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
L +D ++ + +P +R + H F+N+ AL + SIQW D++ L + S+D
Sbjct: 98 LSNYDANKTGLKELP-MRNLQEILHGAVRFSNNPALCNV-ESIQWRDIVSSDFLSNMSMD 155
Query: 235 Y 235
+
Sbjct: 156 F 156
>pdb|1YY9|A Chain A, Structure Of The Extracellular Domain Of The Epidermal
Growth Factor Receptor In Complex With The Fab Fragment
Of Cetuximab/erbitux/imc- C225
Length = 624
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 175 LKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
L +D ++ + +P +R + H F+N+ AL + SIQW D++ L + S+D
Sbjct: 98 LSNYDANKTGLKELP-MRNLQEILHGAVRFSNNPALCNV-ESIQWRDIVSSDFLSNMSMD 155
Query: 235 Y 235
+
Sbjct: 156 F 156
>pdb|3QWQ|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Epidermal Growth Factor Receptor In Complex With An
Adnectin
Length = 648
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 175 LKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
L +D ++ + +P +R + H F+N+ AL + SIQW D++ L + S+D
Sbjct: 122 LSNYDANKTGLKELP-MRNLQEILHGAVRFSNNPALCNV-ESIQWRDIVSSDFLSNMSMD 179
Query: 235 Y 235
+
Sbjct: 180 F 180
>pdb|3NJP|A Chain A, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
pdb|3NJP|B Chain B, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
Length = 614
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 175 LKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
L +D ++ + +P +R + H F+N+ AL + SIQW D++ L + S+D
Sbjct: 98 LSNYDANKTGLKELP-MRNLQEILHGAVRFSNNPALCNV-ESIQWRDIVSSDFLSNMSMD 155
Query: 235 Y 235
+
Sbjct: 156 F 156
>pdb|1NQL|A Chain A, Structure Of The Extracellular Domain Of Human Epidermal
Growth Factor (egf) Receptor In An Inactive (low Ph)
Complex With Egf
Length = 624
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 175 LKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
L +D ++ + +P +R + H F+N+ AL + SIQW D++ L + S+D
Sbjct: 98 LSNYDANKTGLKELP-MRNLQEILHGAVRFSNNPALCNV-ESIQWRDIVSSDFLSNMSMD 155
Query: 235 Y 235
+
Sbjct: 156 F 156
>pdb|3B2V|A Chain A, Crystal Structure Of The Extracellular Region Of The
Epidermal Growth Factor Receptor In Complex With The Fab
Fragment Of Imc-11f8
Length = 624
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 175 LKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
L +D ++ + +P +R + H F+N+ AL + SIQW D++ L + S+D
Sbjct: 98 LSNYDANKTGLKELP-MRNLQEILHGAVRFSNNPALCNV-ESIQWRDIVSSDFLSNMSMD 155
Query: 235 Y 235
+
Sbjct: 156 F 156
>pdb|1IVO|A Chain A, Crystal Structure Of The Complex Of Human Epidermal Growth
Factor And Receptor Extracellular Domains.
pdb|1IVO|B Chain B, Crystal Structure Of The Complex Of Human Epidermal Growth
Factor And Receptor Extracellular Domains
Length = 622
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 175 LKEHDLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLD 234
L +D ++ + +P +R + H F+N+ AL + SIQW D++ L + S+D
Sbjct: 98 LSNYDANKTGLKELP-MRNLQEILHGAVRFSNNPALCNV-ESIQWRDIVSSDFLSNMSMD 155
Query: 235 Y 235
+
Sbjct: 156 F 156
>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
Length = 336
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 102 GVPCGRSL--ASRRTGKIVGGLAANPGEFPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCL 159
G+ C + A+++TG G + + P K G I E W+++A H
Sbjct: 98 GIDCSHVVCDATQKTGFQFKGKVTDGSDPPVEYHRKGSAASHXGVADIDEAWLLSARHLH 157
Query: 160 CNGPSP-LSASQINVTLKEHDLSRP---SISTVPVLR 192
G P +SA+ + K DL R S+S P LR
Sbjct: 158 ATGVFPAISATTLPAARKTXDLXRAAGRSVSFDPNLR 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,249,143
Number of Sequences: 62578
Number of extensions: 516976
Number of successful extensions: 2814
Number of sequences better than 100.0: 367
Number of HSP's better than 100.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1102
Number of HSP's gapped (non-prelim): 1000
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)