RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13815
(388 letters)
>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are
synthesized as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. Alignment contains also inactive enzymes
that have substitutions of the catalytic triad residues.
Length = 232
Score = 242 bits (620), Expect = 5e-79
Identities = 103/272 (37%), Positives = 148/272 (54%), Gaps = 44/272 (16%)
Query: 117 IVGGLAANPGEFPWIVSLKRH-GGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
IVGG A G FPW VSL+ G HFCGG++I +W++TAAHC+ + S V L
Sbjct: 1 IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCV----YSSAPSNYTVRL 56
Query: 176 KEHDLSRPSIS--TVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
HDLS + V +++ HP+++ S+++NDIALL+L R + SD +RP CLPS
Sbjct: 57 GSHDLSSNEGGGQVIKVKKVIVHPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGY 116
Query: 234 D-YSEQSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
+ + + TV+GWG T+E G ++LQ+V + +VSN C+ Y G + ++ +
Sbjct: 117 NLPAGTTCTVSGWGRTSEG---GPLPDVLQEVNVPIVSNAECKRAYSYGGT---ITDNML 170
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG +GGKDAC Q DSGGPL+ +
Sbjct: 171 CAGGLEGGKDAC------------------------------QGDSGGPLVCNDNGRGVL 200
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWISDT 384
+G+VS G GCARP PG+YTR++ Y+ WI T
Sbjct: 201 VGIVSWGSGCARPNYPGVYTRVSSYLDWIQKT 232
Score = 77.7 bits (192), Expect = 2e-16
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
++LQ+V + +VSN C+ Y G + ++ +CAG +GGKDAC DSGGPL+
Sbjct: 137 PLPDVLQEVNVPIVSNAECKRAYSYGGT---ITDNMLCAGGLEGGKDACQGDSGGPLVCN 193
Query: 61 GAESTQVIGLVSTGIG 76
++G+VS G G
Sbjct: 194 DNGRGVLVGIVSWGSG 209
>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these
are synthesised as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. A few, however, are active as single chain
molecules, and others are inactive due to substitutions
of the catalytic triad residues.
Length = 229
Score = 235 bits (602), Expect = 2e-76
Identities = 104/269 (38%), Positives = 148/269 (55%), Gaps = 43/269 (15%)
Query: 116 KIVGGLAANPGEFPWIVSLKRHGG-HFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVT 174
+IVGG AN G FPW VSL+ GG HFCGG++I +W++TAAHC+ S I V
Sbjct: 1 RIVGGSEANIGSFPWQVSLQYGGGRHFCGGSLISPRWVLTAAHCVRGSD----PSNIRVR 56
Query: 175 LKEHDLSRPSIS-TVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
L HDLS + V +++ HP+++ S+++NDIALL+L + SD +RP CLPS +
Sbjct: 57 LGSHDLSSGEEGQVIKVSKVIIHPNYNPSTYDNDIALLKLKEPVTLSDNVRPICLPSSNY 116
Query: 234 DYSE-QSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
+ + TV+GWG T+E G + LQ+V + +VSN C+ Y G + ++ +
Sbjct: 117 NVPAGTTCTVSGWGRTSEGA--GSLPDTLQEVNVPIVSNATCRRAYSGGGA---ITDNML 171
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG +GGKDAC Q DSGGPL+ +
Sbjct: 172 CAGGLEGGKDAC------------------------------QGDSGGPLVCND-GRWVL 200
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
+G+VS G GCARP PG+YTR++ Y+ WI
Sbjct: 201 VGIVSWGSGCARPGKPGVYTRVSSYLDWI 229
Score = 71.6 bits (176), Expect = 2e-14
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
+ LQ+V + +VSN C+ Y G + ++ +CAG +GGKDAC DSGGPL+
Sbjct: 138 SLPDTLQEVNVPIVSNATCRRAYSGGGA---ITDNMLCAGGLEGGKDACQGDSGGPLVCN 194
Query: 61 GAESTQVIGLVSTGIG 76
++G+VS G G
Sbjct: 195 D-GRWVLVGIVSWGSG 209
>gnl|CDD|215708 pfam00089, Trypsin, Trypsin.
Length = 218
Score = 174 bits (443), Expect = 1e-52
Identities = 97/269 (36%), Positives = 135/269 (50%), Gaps = 55/269 (20%)
Query: 117 IVGGLAANPGEFPWIVSLK-RHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTL 175
IVGG A PG FPW VSL+ G HFCGG++I E W++TAAHC+ N S + V L
Sbjct: 1 IVGGDEAQPGSFPWQVSLQVSSGKHFCGGSLISENWVLTAAHCVSNAKS------VRVVL 54
Query: 176 KEHDLSR--PSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSL 233
H++ V +++ HP+++ +NDIALL+L + D +RP CLP+ S
Sbjct: 55 GAHNIVLREGGEQKFDVKKVIVHPNYN-PDTDNDIALLKLKSPVTLGDTVRPICLPTASS 113
Query: 234 DYSE-QSVTVAGWGWTNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQM 292
D + TV+GWG N + LQ+V + VVS + C++ Y V ++ +
Sbjct: 114 DLPVGTTCTVSGWG----NTKTLGLPDTLQEVTVPVVSRETCRSAY-----GGTVTDNMI 164
Query: 293 CAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQADSGGPLMLLGAESTQV 352
CAG GGKDAC Q DSGGPL+ E +
Sbjct: 165 CAG--AGGKDAC------------------------------QGDSGGPLVCSDGE---L 189
Query: 353 IGLVSTGIGCARPRLPGLYTRLTRYIGWI 381
IG+VS G GCA PG+YT ++ Y+ WI
Sbjct: 190 IGIVSWGYGCASGNYPGVYTPVSSYLDWI 218
Score = 53.2 bits (128), Expect = 3e-08
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 10/76 (13%)
Query: 1 RRSNILQKVALSVVSNQVCQAWYQSEGKKINVKESQMCAGHEQGGKDACWADSGGPLMLL 60
+ LQ+V + VVS + C++ Y V ++ +CAG GGKDAC DSGGPL+
Sbjct: 133 GLPDTLQEVTVPVVSRETCRSAY-----GGTVTDNMICAG--AGGKDACQGDSGGPLVCS 185
Query: 61 GAESTQVIGLVSTGIG 76
E +IG+VS G G
Sbjct: 186 DGE---LIGIVSWGYG 198
>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 413
Score = 101 bits (252), Expect = 1e-23
Identities = 82/288 (28%), Positives = 122/288 (42%), Gaps = 59/288 (20%)
Query: 114 TGKIVGGLAANPGEFPWIVSLKRHG-----GHFCGGTIIHEQWIVTAAHCLCNGPSPLSA 168
+ +I+GG AN GE+P +V+L G FCGG+ + ++++TAAHC + SP+S+
Sbjct: 30 SSRIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCA-DASSPISS 88
Query: 169 SQINVTLKEHDLS---RPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRP 225
V + +D S R + T+ V H +S + NDIA+LEL R+ + L R
Sbjct: 89 DVNRVVVDLNDSSQAERGHVRTIYV-----HEFYSPGNLGNDIAVLELARA---ASLPRV 140
Query: 226 ACLPSGSLDYSEQSVT------VAGWGWTNEN--PSQGRRSNILQKVALSVVSNQVCQAW 277
+ D SVT +G T + P + IL +VA+ V C +
Sbjct: 141 KITSFDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTILHEVAVLFVPLSTCAQY 200
Query: 278 YQSE-GKKINVKESQMCAGHEQGGKDACWVSRQWWTPHVARGRVYPSHRSGVHWDPPLQA 336
+ CAG + KDAC Q
Sbjct: 201 KGCANASDGATGLTGFCAG--RPPKDAC------------------------------QG 228
Query: 337 DSGGPLMLLGAESTQVIGLVSTGIG-CARPRLPGLYTRLTRYIGWISD 383
DSGGP+ G E G+VS G G C +PG+YT ++ Y WI+
Sbjct: 229 DSGGPIFHKGEEGRVQRGVVSWGDGGCGGTLIPGVYTNVSNYQDWIAA 276
Score = 37.9 bits (88), Expect = 0.008
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 3 SNILQKVALSVVSNQVCQAWYQSE-GKKINVKESQMCAGHEQGGKDACWADSGGPLMLLG 61
IL +VA+ V C + + CAG + KDAC DSGGP+ G
Sbjct: 181 GTILHEVAVLFVPLSTCAQYKGCANASDGATGLTGFCAG--RPPKDACQGDSGGPIFHKG 238
Query: 62 AESTQVIGLVSTGIG 76
E G+VS G G
Sbjct: 239 EEGRVQRGVVSWGDG 253
>gnl|CDD|176731 cd08316, Death_FAS_TNFRSF6, Death domain of FAS or TNF receptor
superfamily member 6. Death Domain (DD) found in the
FS7-associated cell surface antigen (FAS). FAS, also
known as TNFRSF6 (TNF receptor superfamily member 6),
APT1, CD95, FAS1, or APO-1, together with FADD
(Fas-associating via Death Domain) and caspase 8, is an
integral part of the death inducing signalling complex
(DISC), which plays an important role in the induction
of apoptosis and is activated by binding of the ligand
FasL to FAS. FAS also plays a critical role in
self-tolerance by eliminating cell types (autoreactive T
and B cells) that contribute to autoimmunity. DDs are
protein-protein interaction domains found in a variety
of domain architectures. Their common feature is that
they form homodimers by self-association or heterodimers
by associating with other members of the DD superfamily
including CARD (Caspase activation and recruitment
domain), DED (Death Effector Domain), and PYRIN. They
serve as adaptors in signaling pathways and can recruit
other proteins into signaling complexes.
Length = 97
Score = 28.5 bits (64), Expect = 2.1
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 11/37 (29%)
Query: 248 TNENPSQGRRSNILQKVALSVVSNQVCQAWYQSEGKK 284
+NP QKV Q+ +AWYQS GK
Sbjct: 41 KLDNPQDTAE----QKV-------QLLRAWYQSHGKT 66
>gnl|CDD|216189 pfam00917, MATH, MATH domain. This motif has been called the
Meprin And TRAF-Homology (MATH) domain. This domain is
hugely expanded in the nematode C. elegans.
Length = 116
Score = 28.4 bits (64), Expect = 2.4
Identities = 18/100 (18%), Positives = 25/100 (25%), Gaps = 24/100 (24%)
Query: 128 FPWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINV--TLKEHDLSRPSI 185
PW + + R+GG HC L I TLK + S
Sbjct: 24 IPWRLRIYRNGGFLG-----------LYLHCEKGEKDELLGWSIETEFTLKLVSDNGKS- 71
Query: 186 STVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRP 225
+ + F + I W DL
Sbjct: 72 -------LTKR--NKSHVFTKPTG-YGWGKFISWDDLEND 101
>gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 575
Score = 29.7 bits (68), Expect = 2.6
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 10/34 (29%)
Query: 311 WTPHVARGRVYPSHRSGVHWD-------PPLQAD 337
+TPH+ + ++ SG H D PP++ D
Sbjct: 229 YTPHIGKSDLW--KTSG-HLDNYKENMFPPMEID 259
>gnl|CDD|220189 pfam09342, DUF1986, Domain of unknown function (DUF1986). This
domain is found in serine proteases and is predicted to
contain disulphide bonds.
Length = 267
Score = 29.6 bits (66), Expect = 2.7
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Query: 129 PWIVSLKRHGGHFCGGTIIHEQWIVTAAHCLCNGPSPLSASQINVTLKEHDLSRPSISTV 188
PWI + G + C G +I W++ + CL + + L S I+V L H +
Sbjct: 17 PWIAKVYVEGNYRCTGVLIDLSWVLVSHSCLWD--TSLEHSYISVVLGGHKTLKSVKGPY 74
Query: 189 PVLRIM--FHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGS 232
+ + + I+LL L +S+ + P +PS
Sbjct: 75 EQIYRVDCRK-----DLPRSKISLLHLKSPATFSNHVLPTFVPSTR 115
>gnl|CDD|235376 PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.
Length = 224
Score = 28.6 bits (65), Expect = 4.2
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 15/37 (40%)
Query: 152 IVTAAHCLCNGPSPLSA----------SQINVTLKEH 178
I+ + H PSPLSA S+ N LK+H
Sbjct: 184 ILESPH-----PSPLSAHRGFFGSKHFSKANALLKQH 215
>gnl|CDD|226800 COG4354, COG4354, Predicted bile acid beta-glucosidase
[Carbohydrate transport and metabolism].
Length = 721
Score = 29.1 bits (65), Expect = 4.5
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 179 DLSRPSISTVPVLRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPACLPSGSLDYSEQ 238
D S P P I + + S + +E+ +S +I D
Sbjct: 76 DGSLPKWQWYPKEEIEYEGEYPVSWYVYKNVKVEVKLE-AFSPII--------PNDVKNS 126
Query: 239 SVTVAGWGWTNENPSQGR 256
S+ VA + W + P++G
Sbjct: 127 SLPVAVFSWRVKGPTEGP 144
>gnl|CDD|140271 PTZ00244, PTZ00244, serine/threonine-protein phosphatase PP1;
Provisional.
Length = 294
Score = 28.7 bits (64), Expect = 5.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 191 LRIMFHPSHSCSSFNNDIALLELTRSIQWSDLIRPA 226
L +F + C F+ND A++ + +Q S LI PA
Sbjct: 258 LVTVFSAPNYCGEFDNDAAVMNIDDKLQCSFLIIPA 293
>gnl|CDD|218776 pfam05845, PhnH, Bacterial phosphonate metabolism protein (PhnH).
This family consists of several bacterial PhnH sequences
which are known to be involved in phosphonate
metabolism.
Length = 192
Score = 27.9 bits (63), Expect = 7.6
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 218 QWSDLIRPACLPSGSLDYSEQSVTV 242
+ L A G+ +Y ++S T+
Sbjct: 97 DAAALPPLARFALGTAEYPDRSATL 121
>gnl|CDD|213680 TIGR02067, his_9_HisN, histidinol-phosphatase, inositol
monophosphatase family. This subfamily belongs to the
inositol monophosphatase family (pfam00459). The members
of this family consist of no more than one per species
and are found only in species in which histidine is
synthesized de novo but no histidinol phosphatase can be
found in either of the two described families
(TIGR01261, TIGR01856). In at least one species, the
member of this family is found near known histidine
biosynthesis genes. The role as histidinol-phosphatase
wsa first proven in Corynebacterium glutamicum [Amino
acid biosynthesis, Histidine family].
Length = 251
Score = 28.0 bits (63), Expect = 8.3
Identities = 22/102 (21%), Positives = 28/102 (27%), Gaps = 27/102 (26%)
Query: 87 RWTLDLEVGGSSPIAGVPCGRSLAS-RRTGKIVGGLAANPGEFPWIVSLKRHGGHFCGGT 145
W LD G S I GVP +L + G V G+ P
Sbjct: 76 VWVLDPIDGTKSFIRGVPVWGTLIALVEGGMPVLGVIFQP-------------------- 115
Query: 146 IIHEQWIVTAAHCLCNGPSPLSASQINVTLKEHDLSRPSIST 187
E+W G L S +LS + T
Sbjct: 116 ATGERWWAAGGGAAFLGGRRLRVS------SCANLSDAVLFT 151
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.428
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,973,597
Number of extensions: 1739743
Number of successful extensions: 1135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1113
Number of HSP's successfully gapped: 25
Length of query: 388
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 289
Effective length of database: 6,546,556
Effective search space: 1891954684
Effective search space used: 1891954684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)