BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13817
(164 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0MQH6|NDUS6_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS6 PE=2
SV=1
Length = 124
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 63 ISYIMSLLSLLKQTRVNRLIVPL-TRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKE 121
++ M+ LL + +PL R V+P + THTGQ ++ DYR +RFV ++
Sbjct: 1 MAAAMTFCRLLNRCGEAARSLPLGARCFGVRVSPTGEKVTHTGQVYDDKDYRRIRFVGRQ 60
Query: 122 KHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
K VN FAIDLIAE P + RV+ CDGG G GHPKVYINL
Sbjct: 61 KEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINL 103
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 42/61 (68%)
Query: 2 FEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRP 61
++ DYR +RFV ++K VN FAIDLIAE P + RV+ CDGG G GHPKVYINL
Sbjct: 46 YDDKDYRRIRFVGRQKEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDK 105
Query: 62 E 62
E
Sbjct: 106 E 106
>sp|Q0MQH7|NDUS6_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Pan troglodytes GN=NDUFS6 PE=2 SV=1
Length = 124
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 63 ISYIMSLLSLLKQTRVNRLIVPL-TRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKE 121
++ M+ LL + +PL R V+P + THTGQ ++ DYR +RFV ++
Sbjct: 1 MAAAMTFCRLLNRCGEAARSLPLGARCFGVRVSPTGEKVTHTGQVYDDKDYRRIRFVGRQ 60
Query: 122 KHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
K VN FAIDLIAE P + RV+ CDGG G GHPKVYINL
Sbjct: 61 KEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINL 103
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 42/61 (68%)
Query: 2 FEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRP 61
++ DYR +RFV ++K VN FAIDLIAE P + RV+ CDGG G GHPKVYINL
Sbjct: 46 YDDKDYRRIRFVGRQKEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDK 105
Query: 62 E 62
E
Sbjct: 106 E 106
>sp|O75380|NDUS6_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Homo sapiens GN=NDUFS6 PE=1 SV=1
Length = 124
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 63 ISYIMSLLSLLKQTRVNRLIVPL-TRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKE 121
++ M+ LL + +PL R V+P + THTGQ ++ DYR +RFV ++
Sbjct: 1 MAAAMTFCRLLNRCGEAARSLPLGARCFGVRVSPTGEKVTHTGQVYDDKDYRRIRFVGRQ 60
Query: 122 KHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
K VN FAIDLIAE P + RV+ CDGG G GHPKVYINL
Sbjct: 61 KEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINL 103
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 42/61 (68%)
Query: 2 FEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRP 61
++ DYR +RFV ++K VN FAIDLIAE P + RV+ CDGG G GHPKVYINL
Sbjct: 46 YDDKDYRRIRFVGRQKEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDK 105
Query: 62 E 62
E
Sbjct: 106 E 106
>sp|P52503|NDUS6_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Mus musculus GN=Ndufs6 PE=1 SV=2
Length = 116
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 53/79 (67%)
Query: 86 TRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERV 145
R V+P + THTGQ +++ DYR VRFVD++K VN FAIDLIA+ P + R+
Sbjct: 17 ARGFGVQVSPSGEKITHTGQVYDEKDYRRVRFVDRQKEVNENFAIDLIAQQPVNEVEHRI 76
Query: 146 VWCDGGSGPTGHPKVYINL 164
+ CDGG G GHPKVYINL
Sbjct: 77 IACDGGGGALGHPKVYINL 95
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 44/61 (72%)
Query: 2 FEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRP 61
+++ DYR VRFVD++K VN FAIDLIA+ P + R++ CDGG G GHPKVYINL
Sbjct: 38 YDEKDYRRVRFVDRQKEVNENFAIDLIAQQPVNEVEHRIIACDGGGGALGHPKVYINLDK 97
Query: 62 E 62
E
Sbjct: 98 E 98
>sp|Q4R5X8|NDUS6_MACFA NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Macaca fascicularis GN=NDUFS6 PE=2 SV=1
Length = 124
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 52/79 (65%)
Query: 86 TRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERV 145
R V+P + THTGQ ++ DYR +RFVD++K VN FAIDLIAE P + RV
Sbjct: 25 ARCFGVRVSPTGEKITHTGQVYDDKDYRRIRFVDRQKEVNENFAIDLIAEQPVSEVQTRV 84
Query: 146 VWCDGGSGPTGHPKVYINL 164
+ CDGG G GHPKVYINL
Sbjct: 85 IACDGGGGALGHPKVYINL 103
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 43/61 (70%)
Query: 2 FEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRP 61
++ DYR +RFVD++K VN FAIDLIAE P + RV+ CDGG G GHPKVYINL
Sbjct: 46 YDDKDYRRIRFVDRQKEVNENFAIDLIAEQPVSEVQTRVIACDGGGGALGHPKVYINLDK 105
Query: 62 E 62
E
Sbjct: 106 E 106
>sp|P23934|NDUS6_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Bos taurus GN=NDUFS6 PE=1 SV=2
Length = 124
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 63 ISYIMSLLSLL-KQTRVNRLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKE 121
++ +++ L L + V R + R +P + THTGQ ++ DYR VRFV ++
Sbjct: 1 MAAVLTFLRFLGRGGAVTRGLPGGARCFGVRTSPTGEKVTHTGQVYDDGDYRKVRFVGRQ 60
Query: 122 KHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
K VN FAIDLIAE P RV+ CDGG G GHP+VYINL
Sbjct: 61 KEVNENFAIDLIAEQPVSQVGSRVISCDGGGGALGHPRVYINL 103
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 41/61 (67%)
Query: 2 FEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRP 61
++ DYR VRFV ++K VN FAIDLIAE P RV+ CDGG G GHP+VYINL
Sbjct: 46 YDDGDYRKVRFVGRQKEVNENFAIDLIAEQPVSQVGSRVISCDGGGGALGHPRVYINLDK 105
Query: 62 E 62
E
Sbjct: 106 E 106
>sp|Q0MQH5|NDUS6_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Pongo pygmaeus GN=NDUFS6 PE=2 SV=1
Length = 124
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 63 ISYIMSLLSLLKQ-TRVNRLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKE 121
++ M+ LL + R + R V+P + THTGQ ++ DYR +RFV ++
Sbjct: 1 MAAAMTFYRLLNRWGEAARSLRLGARCFGVRVSPTGEKVTHTGQVYDDKDYRRIRFVGRQ 60
Query: 122 KHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
K VN FAIDLIAE P + RV+ CDGG G GHPKVYINL
Sbjct: 61 KEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINL 103
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 42/61 (68%)
Query: 2 FEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRP 61
++ DYR +RFV ++K VN FAIDLIAE P + RV+ CDGG G GHPKVYINL
Sbjct: 46 YDDKDYRRIRFVGRQKEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDK 105
Query: 62 E 62
E
Sbjct: 106 E 106
>sp|P52504|NDUS6_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Rattus norvegicus GN=Ndufs6 PE=3 SV=1
Length = 116
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 45/64 (70%)
Query: 101 THTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKV 160
THTGQ + DYR +RFVD++K VN FAIDLIA+ P R++ CDGG G GHPKV
Sbjct: 32 THTGQVSDGKDYRGIRFVDRQKEVNENFAIDLIAQQPVNEVDRRIIACDGGGGALGHPKV 91
Query: 161 YINL 164
YINL
Sbjct: 92 YINL 95
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 40/57 (70%)
Query: 6 DYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRPE 62
DYR +RFVD++K VN FAIDLIA+ P R++ CDGG G GHPKVYINL E
Sbjct: 42 DYRGIRFVDRQKEVNENFAIDLIAQQPVNEVDRRIIACDGGGGALGHPKVYINLDKE 98
>sp|Q19724|NDUS6_CAEEL Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Caenorhabditis elegans GN=nduf-6 PE=3
SV=1
Length = 140
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 84 PLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKE 143
P + K+ A F+ + THTGQ +++ DYR RF +K VN A+ LI + PP+ C +
Sbjct: 27 PTPNQITKNNAQFDKV-THTGQAWDQSDYRLQRFDISKKSVNPNVAMHLIDQRPPEDCGD 85
Query: 144 -RVVWCDGGSGPTGHPKVYINL 164
RVV+CDGG GHPKVYINL
Sbjct: 86 KRVVFCDGGHPALGHPKVYINL 107
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 2 FEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKE-RVVWCDGGSGPTGHPKVYINL 59
+++ DYR RF +K VN A+ LI + PP+ C + RVV+CDGG GHPKVYINL
Sbjct: 49 WDQSDYRLQRFDISKKSVNPNVAMHLIDQRPPEDCGDKRVVFCDGGHPALGHPKVYINL 107
>sp|Q5AUI1|LBSA_EMENI Lactobacillus shifted protein OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=lbsA
PE=1 SV=1
Length = 213
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 24 AIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL-RPEI 63
AI+LI + P + K+++V CDGG GP GHP+++IN +PEI
Sbjct: 119 AIELIHKQPVRWVKDKIVSCDGGGGPLGHPRIFINTDKPEI 159
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 129 AIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYIN 163
AI+LI + P + K+++V CDGG GP GHP+++IN
Sbjct: 119 AIELIHKQPVRWVKDKIVSCDGGGGPLGHPRIFIN 153
>sp|Q9M9M6|NDUS6_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Arabidopsis thaliana GN=At3g03070 PE=3
SV=1
Length = 110
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 25 IDLIAEVPPKPCKERVVWCDGGSGPT-GHPKVYINL 59
++LI+EVPP R+V C+G + P GHP +I L
Sbjct: 54 MELISEVPPIKVDGRIVACEGDTNPALGHPIEFICL 89
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 130 IDLIAEVPPKPCKERVVWCDGGSGPT-GHPKVYINL 164
++LI+EVPP R+V C+G + P GHP +I L
Sbjct: 54 MELISEVPPIKVDGRIVACEGDTNPALGHPIEFICL 89
>sp|Q8BJW5|NOL11_MOUSE Nucleolar protein 11 OS=Mus musculus GN=Nol11 PE=2 SV=1
Length = 723
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 54 KVYINLRPEISYIMSLLSLLKQTRVNRLIVPLTRTLAKDVAPFNDI 99
KV NL+PE+ LLS++K+ + V L + LAK F+ I
Sbjct: 385 KVETNLQPEVPGFKQLLSIIKKDSEKHIEVELRKFLAKSTPAFHTI 430
>sp|Q0VDQ9|FEZF1_MOUSE Fez family zinc finger protein 1 OS=Mus musculus GN=Fezf1 PE=2 SV=1
Length = 475
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 40 VVWCDGGSGPTGHPKVYINLRPEISYIMSLLSLLKQTRV-----NRLIVPLTRTLAKDVA 94
+ + + G GP HP +N+ P SY +S L Q + N+L+VP L VA
Sbjct: 160 LCYLNRGDGPC-HPAASVNIHPVASYFLS-SPLHPQPKTYLAERNKLVVPAVEKLPSGVA 217
Query: 95 PFNDIETHTGQKFEKDD 111
F D+ Q + K+
Sbjct: 218 -FKDLSQAQLQHYMKES 233
>sp|Q9PJF4|UVRB_CHLMU UvrABC system protein B OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=uvrB PE=3 SV=1
Length = 676
Score = 30.4 bits (67), Expect = 5.3, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 49 PTGHPKVYINLRPEISYIMSLLSLLKQTRVNR-----LIVPLTRTLAKDVAPF 96
PTG P +RP I LL ++Q R+ + L+V +T+ LA+D+A F
Sbjct: 425 PTGIPDPLPEIRPATGQIDDLLEEIRQ-RLRKDQEKILVVSVTKKLAEDIAAF 476
>sp|Q4PEX7|DBP8_USTMA ATP-dependent RNA helicase DBP8 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=DBP8 PE=3 SV=1
Length = 602
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 59 LRPEISYIMSLLSLLKQTRVNRLIVPLTRTLAKDVAPFNDIETHTGQ------KFEKDDY 112
+PE+ Y+ S+L K + + T TL + V F + + G+ K E D
Sbjct: 274 FKPELEYLYSVLPSAKTLQT----LLFTATLTEQVVEFANAKRPEGKPAPMVCKIEMDTK 329
Query: 113 RP----VRFVDKEKHVNTQFAIDLIAEVPPKPCKERV 145
P R+V HV + ++ P KP ERV
Sbjct: 330 TPETLEQRYVFVPSHVREPYLYHILRHPPIKPSSERV 366
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,896,657
Number of Sequences: 539616
Number of extensions: 2876166
Number of successful extensions: 5567
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5540
Number of HSP's gapped (non-prelim): 36
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)