Query psy13817
Match_columns 164
No_of_seqs 254 out of 409
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 21:13:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3456|consensus 100.0 4.2E-37 9E-42 237.0 3.1 97 66-164 2-99 (120)
2 KOG3456|consensus 100.0 5.2E-32 1.1E-36 208.8 2.1 72 1-72 41-112 (120)
3 PF10276 zf-CHCC: Zinc-finger 99.5 5.9E-15 1.3E-19 95.7 2.0 36 37-72 1-37 (40)
4 PF10276 zf-CHCC: Zinc-finger 99.2 7.1E-12 1.5E-16 81.3 2.2 23 142-164 1-23 (40)
5 COG4391 Uncharacterized protei 98.4 1.4E-07 3.1E-12 66.7 2.9 42 31-72 15-56 (62)
6 COG4391 Uncharacterized protei 97.3 0.00025 5.3E-09 50.4 2.9 29 136-164 15-43 (62)
7 PLN02294 cytochrome c oxidase 47.5 23 0.00049 29.8 3.3 36 36-71 113-148 (174)
8 cd01449 TST_Repeat_2 Thiosulfa 46.4 12 0.00026 26.5 1.4 38 125-162 62-108 (118)
9 COG2897 SseA Rhodanese-related 44.6 25 0.00054 31.0 3.3 38 124-162 73-121 (285)
10 cd00924 Cyt_c_Oxidase_Vb Cytoc 44.1 23 0.0005 26.8 2.6 33 37-71 54-86 (97)
11 PTZ00043 cytochrome c oxidase 43.3 25 0.00055 31.2 3.1 36 37-72 154-189 (268)
12 PRK10026 arsenate reductase; P 41.6 49 0.0011 26.3 4.2 35 123-159 75-109 (141)
13 COG2897 SseA Rhodanese-related 40.5 34 0.00073 30.2 3.4 38 20-58 74-122 (285)
14 PF01215 COX5B: Cytochrome c o 39.6 31 0.00067 27.7 2.8 33 37-70 86-118 (136)
15 cd01529 4RHOD_Repeats Member o 35.6 20 0.00044 24.7 1.1 18 40-57 60-86 (96)
16 cd01445 TST_Repeats Thiosulfat 31.5 34 0.00074 26.1 1.8 38 20-57 79-128 (138)
17 cd03034 ArsC_ArsC Arsenate Red 27.9 1.1E+02 0.0024 22.6 4.0 84 50-158 22-105 (112)
18 KOG3463|consensus 23.1 40 0.00086 26.6 0.9 9 143-151 95-103 (109)
19 cd01448 TST_Repeat_1 Thiosulfa 23.0 93 0.002 22.2 2.7 40 123-162 61-110 (122)
20 PRK06366 acetyl-CoA acetyltran 22.7 23 0.00049 31.5 -0.6 37 123-159 309-345 (388)
21 KOG1391|consensus 22.6 24 0.00051 32.4 -0.5 37 123-159 317-353 (396)
22 PRK09629 bifunctional thiosulf 21.8 1.9E+02 0.0042 27.9 5.4 28 12-39 4-31 (610)
23 PHA03357 Alkaline exonuclease; 21.5 67 0.0014 24.1 1.7 51 68-120 11-63 (81)
24 COG1187 RsuA 16S rRNA uridine- 21.2 53 0.0011 28.5 1.4 64 7-70 3-79 (248)
No 1
>KOG3456|consensus
Probab=100.00 E-value=4.2e-37 Score=237.05 Aligned_cols=97 Identities=45% Similarity=0.655 Sum_probs=90.0
Q ss_pred hhhhhHHhhhhhhcccccccc-ceeecccCcCCccccccccCCCccCCCCccccCCccCCChHHHHhhhhcCCCeeeeCc
Q psy13817 66 IMSLLSLLKQTRVNRLIVPLT-RTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKER 144 (164)
Q Consensus 66 vm~~Cr~l~~~~~~~~~~~~~-r~~~~~~~~~~~~~thTgq~~~~~d~r~~RF~~~~kq~np~~Ai~LI~e~p~~~v~~r 144 (164)
.+.+|.++.+.+....++|++ |....+. ..+++|||||+||+.|||++||++++|.+|+||||+||+|+|++.|++|
T Consensus 2 s~~l~~~lsr~~l~~rs~pl~~r~~~~r~--~~ekvThtGq~~D~~Dyr~~rf~~~kk~vn~n~~m~LI~e~Pp~e~d~R 79 (120)
T KOG3456|consen 2 SNLLKALLSRQGLPSRSTPLTRRNFSVRT--QFEKVTHTGQVTDQSDYRGNRFVKWKKDVNENSAMELISEVPPIEVDGR 79 (120)
T ss_pred chHHHHHHhcCCCcccccccccccceeec--ccceeeecCcccchHHHhHHHHHhhhhhcCccchhhhhhcCChhhccce
Confidence 478999999999999999999 4443333 7789999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCceeeeeC
Q psy13817 145 VVWCDGGSGPTGHPKVYINL 164 (164)
Q Consensus 145 ~v~CDGG~galGHP~VyInL 164 (164)
+|+||||+||||||+|||||
T Consensus 80 VV~CdGg~~aLGHPkvyInL 99 (120)
T KOG3456|consen 80 VVACDGGTPALGHPKVYINL 99 (120)
T ss_pred EEEecCCCCCCCCCeEEEEc
Confidence 99999999999999999998
No 2
>KOG3456|consensus
Probab=99.97 E-value=5.2e-32 Score=208.84 Aligned_cols=72 Identities=47% Similarity=0.710 Sum_probs=70.3
Q ss_pred CCCcccCCcCCccCCccccChHHHHhhhhcCCCeeeeCceEEecCCCCCCCCCeEEEEcCCCchhhhhhhHH
Q psy13817 1 KFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLSL 72 (164)
Q Consensus 1 ~~d~~dyr~~RF~~~~kqvn~~~Ai~LI~e~p~~~v~~~~v~CDGG~galGHP~Vyinld~~~~~vm~~Cr~ 72 (164)
.||++|||++||+..+|.+|+||||+||+|+|++.|++|+|+||||+||||||+||||||++..++|+||.+
T Consensus 41 ~~D~~Dyr~~rf~~~kk~vn~n~~m~LI~e~Pp~e~d~RVV~CdGg~~aLGHPkvyInLDk~~~~~CgYCGl 112 (120)
T KOG3456|consen 41 VTDQSDYRGNRFVKWKKDVNENSAMELISEVPPIEVDGRVVACDGGTPALGHPKVYINLDKPGPHICGYCGL 112 (120)
T ss_pred ccchHHHhHHHHHhhhhhcCccchhhhhhcCChhhccceEEEecCCCCCCCCCeEEEEcCCCCCcccccchh
Confidence 389999999999999999999999999999999999999999999999999999999999999999999986
No 3
>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.
Probab=99.50 E-value=5.9e-15 Score=95.67 Aligned_cols=36 Identities=42% Similarity=0.743 Sum_probs=30.8
Q ss_pred eCceEEecCCCCCCCCCeEEEEcCCC-chhhhhhhHH
Q psy13817 37 KERVVWCDGGSGPTGHPKVYINLRPE-ISYIMSLLSL 72 (164)
Q Consensus 37 ~~~~v~CDGG~galGHP~Vyinld~~-~~~vm~~Cr~ 72 (164)
++++|+||||+|+||||+|||+|+.+ ...+|.||..
T Consensus 1 ~~~~v~CdG~~~~lgHPrVyl~l~~~~~~~~CpYCg~ 37 (40)
T PF10276_consen 1 DGRRVSCDGGGGALGHPRVYLNLDDEPGPVVCPYCGT 37 (40)
T ss_dssp -SSEEEEEESSTTSCCCCEEEE-TTTTCEEEETTTTE
T ss_pred CCcEEEeCCCCCCCCCCeEEEecCCCCCeEECCCCCC
Confidence 57899999999999999999999986 5699999964
No 4
>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.
Probab=99.20 E-value=7.1e-12 Score=81.31 Aligned_cols=23 Identities=61% Similarity=1.196 Sum_probs=20.5
Q ss_pred eCcEEEecCCCCCCCCceeeeeC
Q psy13817 142 KERVVWCDGGSGPTGHPKVYINL 164 (164)
Q Consensus 142 ~~r~v~CDGG~galGHP~VyInL 164 (164)
++++|+||||+|+||||+|||+|
T Consensus 1 ~~~~v~CdG~~~~lgHPrVyl~l 23 (40)
T PF10276_consen 1 DGRRVSCDGGGGALGHPRVYLNL 23 (40)
T ss_dssp -SSEEEEEESSTTSCCCCEEEE-
T ss_pred CCcEEEeCCCCCCCCCCeEEEec
Confidence 57999999999999999999997
No 5
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.44 E-value=1.4e-07 Score=66.72 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=37.8
Q ss_pred CCCeeeeCceEEecCCCCCCCCCeEEEEcCCCchhhhhhhHH
Q psy13817 31 VPPKPCKERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLSL 72 (164)
Q Consensus 31 ~p~~~v~~~~v~CDGG~galGHP~Vyinld~~~~~vm~~Cr~ 72 (164)
..+|.+....++|+|-++++|||+|||.|.++.-.+|.||.-
T Consensus 15 ~~~I~~~~~~l~C~g~~~p~~HPrV~L~mg~~gev~CPYC~t 56 (62)
T COG4391 15 HETIEIGDLPLMCPGPEPPNDHPRVFLDMGDEGEVVCPYCST 56 (62)
T ss_pred ceEEEeCCeeEEcCCCCCCCCCCEEEEEcCCCCcEecCcccc
Confidence 456777889999999999999999999999999999999964
No 6
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.26 E-value=0.00025 Score=50.43 Aligned_cols=29 Identities=21% Similarity=0.547 Sum_probs=25.3
Q ss_pred CCCeeeeCcEEEecCCCCCCCCceeeeeC
Q psy13817 136 VPPKPCKERVVWCDGGSGPTGHPKVYINL 164 (164)
Q Consensus 136 ~p~~~v~~r~v~CDGG~galGHP~VyInL 164 (164)
..+|.+....++|+|-++++|||+||+.+
T Consensus 15 ~~~I~~~~~~l~C~g~~~p~~HPrV~L~m 43 (62)
T COG4391 15 HETIEIGDLPLMCPGPEPPNDHPRVFLDM 43 (62)
T ss_pred ceEEEeCCeeEEcCCCCCCCCCCEEEEEc
Confidence 45677788899999999999999999964
No 7
>PLN02294 cytochrome c oxidase subunit Vb
Probab=47.51 E-value=23 Score=29.84 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=29.8
Q ss_pred eeCceEEecCCCCCCCCCeEEEEcCCCchhhhhhhH
Q psy13817 36 CKERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLS 71 (164)
Q Consensus 36 v~~~~v~CDGG~galGHP~Vyinld~~~~~vm~~Cr 71 (164)
-+.|+|.|=||.+.==|-.+|+.|.+..+.-|--|.
T Consensus 113 ~d~RiVGCtg~~~eDsh~v~Wf~L~kGkp~RCpeCG 148 (174)
T PLN02294 113 YDKRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCT 148 (174)
T ss_pred CCceEEeeCCCCCCCCceeEEEEecCCCceeCCCCC
Confidence 347999999987777899999999888777776664
No 8
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=46.43 E-value=12 Score=26.46 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=24.3
Q ss_pred ChHHHHhhhhcCCCeeeeCcEEEecCCCC---------CCCCceeee
Q psy13817 125 NTQFAIDLIAEVPPKPCKERVVWCDGGSG---------PTGHPKVYI 162 (164)
Q Consensus 125 np~~Ai~LI~e~p~~~v~~r~v~CDGG~g---------alGHP~VyI 162 (164)
++....+++.+..+..-+.=++.|++|.. .+||+.||+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~ 108 (118)
T cd01449 62 SPEELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRL 108 (118)
T ss_pred CHHHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeee
Confidence 45555566666665444445678888643 479998764
No 9
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=44.56 E-value=25 Score=31.05 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=28.2
Q ss_pred CChHHHHhhhhcCCCeeeeCcEEEecCCCC-----------CCCCceeee
Q psy13817 124 VNTQFAIDLIAEVPPKPCKERVVWCDGGSG-----------PTGHPKVYI 162 (164)
Q Consensus 124 ~np~~Ai~LI~e~p~~~v~~r~v~CDGG~g-----------alGHP~VyI 162 (164)
+.|..=.+++.+-=|. -+..||.+|++++ .+||++|||
T Consensus 73 p~~e~fa~~~~~~GI~-~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~i 121 (285)
T COG2897 73 PSPEQFAKLLGELGIR-NDDTVVVYDDGGGFFAARAWWLLRYLGHENVRI 121 (285)
T ss_pred CCHHHHHHHHHHcCCC-CCCEEEEECCCCCeehHHHHHHHHHcCCCceEE
Confidence 4444445677766666 6788999998776 589999987
No 10
>cd00924 Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly.
Probab=44.11 E-value=23 Score=26.78 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=27.2
Q ss_pred eCceEEecCCCCCCCCCeEEEEcCCCchhhhhhhH
Q psy13817 37 KERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLS 71 (164)
Q Consensus 37 ~~~~v~CDGG~galGHP~Vyinld~~~~~vm~~Cr 71 (164)
+.|+|.|=|+.+ -|=.+|+.|.+..+.-|--|.
T Consensus 54 ~~RiVGC~g~~~--~h~v~W~~l~~g~~~rC~eCG 86 (97)
T cd00924 54 DKRIVGCICEPD--SHDVIWMWLEKGKPKRCPECG 86 (97)
T ss_pred CCeEEeeeCCCC--CceEEEEEEeCCCceeCCCCC
Confidence 479999998887 899999999887777766554
No 11
>PTZ00043 cytochrome c oxidase subunit; Provisional
Probab=43.25 E-value=25 Score=31.22 Aligned_cols=36 Identities=31% Similarity=0.496 Sum_probs=30.9
Q ss_pred eCceEEecCCCCCCCCCeEEEEcCCCchhhhhhhHH
Q psy13817 37 KERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLSL 72 (164)
Q Consensus 37 ~~~~v~CDGG~galGHP~Vyinld~~~~~vm~~Cr~ 72 (164)
+.|+|.|=||.+.=-|-.+|+.+.+....-|--|..
T Consensus 154 deRyVGCTGg~~EDeH~VvWFwLrEGkpqRCpECGq 189 (268)
T PTZ00043 154 TERVVGCTGGTGEHEHVPLWFRCREGFLYRCGECDQ 189 (268)
T ss_pred CceEEeccCCCccCCceeEEEEecCCCCccCCCCCc
Confidence 369999999888878999999998888888877764
No 12
>PRK10026 arsenate reductase; Provisional
Probab=41.63 E-value=49 Score=26.30 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=25.6
Q ss_pred CCChHHHHhhhhcCCCeeeeCcEEEecCCCCCCCCce
Q psy13817 123 HVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPK 159 (164)
Q Consensus 123 q~np~~Ai~LI~e~p~~~v~~r~v~CDGG~galGHP~ 159 (164)
..+.+.++++|.+.|... .|=+.+||++..+|-|.
T Consensus 75 ~ls~~e~l~ll~~~P~LI--KRPIi~~~~~a~i~Rp~ 109 (141)
T PRK10026 75 KFTDDQLIDFMLQHPILI--NRPIVVTPLGTRLCRPS 109 (141)
T ss_pred CCCHHHHHHHHHhCccce--eCcEEEcCCCeEEECCH
Confidence 346788999999998755 56666777776677663
No 13
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=40.47 E-value=34 Score=30.24 Aligned_cols=38 Identities=29% Similarity=0.379 Sum_probs=27.2
Q ss_pred ChHHHHhhhhcCCCeeeeCceEEecCCCC-----------CCCCCeEEEE
Q psy13817 20 NTQFAIDLIAEVPPKPCKERVVWCDGGSG-----------PTGHPKVYIN 58 (164)
Q Consensus 20 n~~~Ai~LI~e~p~~~v~~~~v~CDGG~g-----------alGHP~Vyin 58 (164)
.+..=.+++.+-=|. -+..+|.+|++++ .+||++|+|=
T Consensus 74 ~~e~fa~~~~~~GI~-~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iL 122 (285)
T COG2897 74 SPEQFAKLLGELGIR-NDDTVVVYDDGGGFFAARAWWLLRYLGHENVRIL 122 (285)
T ss_pred CHHHHHHHHHHcCCC-CCCEEEEECCCCCeehHHHHHHHHHcCCCceEEe
Confidence 444445566666555 5678999998777 3799999984
No 14
>PF01215 COX5B: Cytochrome c oxidase subunit Vb This family consists of chains F and S ; InterPro: IPR002124 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits, which is known as Vb in mammals, V in Dictyostelium discoideum (Slime mold) and IV in yeast, binds a zinc atom. The sequence of subunit Vb is well conserved and includes three conserved cysteines that coordinate the zinc ion [, ]. Two of these cysteines are clustered in the C-terminal section of the subunit.; GO: 0004129 cytochrome-c oxidase activity, 0005740 mitochondrial envelope; PDB: 2EIL_S 2ZXW_S 3ASN_S 1OCO_S 3AG4_S 3ABK_S 1OCZ_S 1OCC_F 3ASO_S 3ABL_S ....
Probab=39.60 E-value=31 Score=27.72 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=24.1
Q ss_pred eCceEEecCCCCCCCCCeEEEEcCCCchhhhhhh
Q psy13817 37 KERVVWCDGGSGPTGHPKVYINLRPEISYIMSLL 70 (164)
Q Consensus 37 ~~~~v~CDGG~galGHP~Vyinld~~~~~vm~~C 70 (164)
+.|+|.|=|+.+. -|-.+|+.|.+..+.-|--|
T Consensus 86 ~~RiVGC~g~~~~-sH~v~W~~l~~g~~~RCpeC 118 (136)
T PF01215_consen 86 DERIVGCTGEPDD-SHDVIWFWLHKGKPQRCPEC 118 (136)
T ss_dssp SCEEEEESSSTT--SSS-EEEEEETTSEEEETTT
T ss_pred CceEEeeccCCCC-cceeEEEEEeCCCccCCCCC
Confidence 3699999998865 69999999977666555444
No 15
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=35.55 E-value=20 Score=24.66 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=12.7
Q ss_pred eEEecCCCC---------CCCCCeEEE
Q psy13817 40 VVWCDGGSG---------PTGHPKVYI 57 (164)
Q Consensus 40 ~v~CDGG~g---------alGHP~Vyi 57 (164)
++.|++|.- .+||++||+
T Consensus 60 vv~c~~g~~s~~~~~~l~~~G~~~v~~ 86 (96)
T cd01529 60 VLTCDGSLLARFAAQELLALGGKPVAL 86 (96)
T ss_pred EEEeCChHHHHHHHHHHHHcCCCCEEE
Confidence 677887654 268888765
No 16
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=31.46 E-value=34 Score=26.12 Aligned_cols=38 Identities=18% Similarity=0.090 Sum_probs=21.8
Q ss_pred ChHHHHhhhhcCCCeeeeCceEEecC-CCC-----------CCCCCeEEE
Q psy13817 20 NTQFAIDLIAEVPPKPCKERVVWCDG-GSG-----------PTGHPKVYI 57 (164)
Q Consensus 20 n~~~Ai~LI~e~p~~~v~~~~v~CDG-G~g-----------alGHP~Vyi 57 (164)
++....+++.+.-|..-+.=++.|++ ++| .+||+.|+|
T Consensus 79 ~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~i 128 (138)
T cd01445 79 SEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAI 128 (138)
T ss_pred CHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEE
Confidence 33455566666665443334556654 122 169999988
No 17
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=27.87 E-value=1.1e+02 Score=22.57 Aligned_cols=84 Identities=14% Similarity=0.159 Sum_probs=46.2
Q ss_pred CCCCeEEEEcCCCchhhhhhhHHhhhhhhccccccccceeecccCcCCccccccccCCCccCCCCccccCCccCCChHHH
Q psy13817 50 TGHPKVYINLRPEISYIMSLLSLLKQTRVNRLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFA 129 (164)
Q Consensus 50 lGHP~Vyinld~~~~~vm~~Cr~l~~~~~~~~~~~~~r~~~~~~~~~~~~~thTgq~~~~~d~r~~RF~~~~kq~np~~A 129 (164)
.|+|-.++++-++....-.+-.|+.+++..-... +.-.|..|++-.. ..++.+.+.+
T Consensus 22 ~~i~~~~~di~~~~~t~~el~~~l~~~~~~~~~l----------------in~~~~~y~~l~~-------~~~~ls~~e~ 78 (112)
T cd03034 22 AGIEPEIVEYLKTPPTAAELRELLAKLGISPRDL----------------LRTKEAPYKELGL-------ADPELSDEEL 78 (112)
T ss_pred CCCCeEEEecccCCcCHHHHHHHHHHcCCCHHHH----------------HhcCCchHHHcCC-------CccCCCHHHH
Confidence 3777777887777777777777777766322222 1222333333211 1134567889
Q ss_pred HhhhhcCCCeeeeCcEEEecCCCCCCCCc
Q psy13817 130 IDLIAEVPPKPCKERVVWCDGGSGPTGHP 158 (164)
Q Consensus 130 i~LI~e~p~~~v~~r~v~CDGG~galGHP 158 (164)
+++|.+.|... .-.++. ||+.--+|-|
T Consensus 79 i~ll~~~P~Li-kRPIi~-~~~~~~vG~~ 105 (112)
T cd03034 79 IDAMAAHPILI-ERPIVV-TGDGAVLGRP 105 (112)
T ss_pred HHHHHhCcCcc-cCCEEE-ECCEEEEcCC
Confidence 99999988643 223333 3443335544
No 18
>KOG3463|consensus
Probab=23.12 E-value=40 Score=26.56 Aligned_cols=9 Identities=44% Similarity=0.940 Sum_probs=7.3
Q ss_pred CcEEEecCC
Q psy13817 143 ERVVWCDGG 151 (164)
Q Consensus 143 ~r~v~CDGG 151 (164)
=+||||||-
T Consensus 95 vkIVACdg~ 103 (109)
T KOG3463|consen 95 VKIVACDGK 103 (109)
T ss_pred EEEEEecCc
Confidence 478999994
No 19
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=22.96 E-value=93 Score=22.16 Aligned_cols=40 Identities=23% Similarity=0.231 Sum_probs=20.7
Q ss_pred CCChHHHHhhhhcCCCeeeeCcEEEecCC-CCC---------CCCceeee
Q psy13817 123 HVNTQFAIDLIAEVPPKPCKERVVWCDGG-SGP---------TGHPKVYI 162 (164)
Q Consensus 123 q~np~~Ai~LI~e~p~~~v~~r~v~CDGG-~ga---------lGHP~VyI 162 (164)
.+++....+++.+..+..-..-++.|.+| ..+ +||.+||+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~ 110 (122)
T cd01448 61 LPSPEEFAELLGSLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRV 110 (122)
T ss_pred CCCHHHHHHHHHHcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEE
Confidence 34444445555433222222335778775 332 69998874
No 20
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=22.70 E-value=23 Score=31.49 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=24.5
Q ss_pred CCChHHHHhhhhcCCCeeeeCcEEEecCCCCCCCCce
Q psy13817 123 HVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPK 159 (164)
Q Consensus 123 q~np~~Ai~LI~e~p~~~v~~r~v~CDGG~galGHP~ 159 (164)
++|..||+.-+...+-.-.++..|..+||.=++|||.
T Consensus 309 Ei~daFa~~~l~~le~lgl~g~~vN~~GG~la~GHP~ 345 (388)
T PRK06366 309 EHNEAFSIASIIVRDQLKIDNERFNVNGGAVAIGHPI 345 (388)
T ss_pred eccchhHHHHHHHHHHhCCCCCccCCCCchhhhCCCc
Confidence 5566666554433333334666899999998999994
No 21
>KOG1391|consensus
Probab=22.61 E-value=24 Score=32.44 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=29.7
Q ss_pred CCChHHHHhhhhcCCCeeeeCcEEEecCCCCCCCCce
Q psy13817 123 HVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPK 159 (164)
Q Consensus 123 q~np~~Ai~LI~e~p~~~v~~r~v~CDGG~galGHP~ 159 (164)
++|+-||-+.++-+--.-.+-....-+||.-|||||.
T Consensus 317 EvNEAFApQ~LAv~r~L~ld~sKlNVNGGAIALGHPL 353 (396)
T KOG1391|consen 317 EVNEAFAPQYLAVERSLDLDISKLNVNGGAIALGHPL 353 (396)
T ss_pred EechhhchHHHHHHHhhCCChhhccccCceeeccCcc
Confidence 7899998887776666666666777889998999995
No 22
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=21.81 E-value=1.9e+02 Score=27.86 Aligned_cols=28 Identities=4% Similarity=-0.063 Sum_probs=22.5
Q ss_pred ccCCccccChHHHHhhhhcCCCeeeeCc
Q psy13817 12 FVDKEKHVNTQFAIDLIAEVPPKPCKER 39 (164)
Q Consensus 12 F~~~~kqvn~~~Ai~LI~e~p~~~v~~~ 39 (164)
|...+..++++++.++|.+..++.+|-|
T Consensus 4 ~~~~~~lIs~~eL~~~l~~~~vvIIDvR 31 (610)
T PRK09629 4 FTGLSLVIEPNDLLERLDAPELILVDLT 31 (610)
T ss_pred cccCCceecHHHHHHHhcCCCEEEEECC
Confidence 4445667899999999988888888866
No 23
>PHA03357 Alkaline exonuclease; Provisional
Probab=21.50 E-value=67 Score=24.08 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=28.1
Q ss_pred hhhHHhhhhhhccccccccceeeccc--CcCCccccccccCCCccCCCCccccCC
Q psy13817 68 SLLSLLKQTRVNRLIVPLTRTLAKDV--APFNDIETHTGQKFEKDDYRPVRFVDK 120 (164)
Q Consensus 68 ~~Cr~l~~~~~~~~~~~~~r~~~~~~--~~~~~~~thTgq~~~~~d~r~~RF~~~ 120 (164)
++|+|++|.- ++-+-+.-.++... .+.-+-.-+++..-+..|++..||.+.
T Consensus 11 g~C~~CkR~N--~LvT~sGetvaLdad~FEdF~lDE~~~e~~~~~~~~~~~~~~~ 63 (81)
T PHA03357 11 GICGLCKRYN--ELVTCDGETLALNADCFEDFDFDENTNEAADKPDFPKPNFIDP 63 (81)
T ss_pred ceechhcccC--eEEecCCcEEEeChhhhhccccccccCccccCcCCCCCcccCC
Confidence 4677776643 23333333343222 222223456667778888999999863
No 24
>COG1187 RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]
Probab=21.24 E-value=53 Score=28.55 Aligned_cols=64 Identities=20% Similarity=0.130 Sum_probs=45.4
Q ss_pred CCcCCccCCccccChHHHHhhhhcCCCee-----------eeC-ceEEecCCCCCC-CCCeEEEEcCCCchhhhhhh
Q psy13817 7 YRPVRFVDKEKHVNTQFAIDLIAEVPPKP-----------CKE-RVVWCDGGSGPT-GHPKVYINLRPEISYIMSLL 70 (164)
Q Consensus 7 yr~~RF~~~~kqvn~~~Ai~LI~e~p~~~-----------v~~-~~v~CDGG~gal-GHP~Vyinld~~~~~vm~~C 70 (164)
.|.++|......-+...|++||.+-.|.. ++. ..+.+.+|.-.. -++++||-+.++.+.+|+.-
T Consensus 3 ~RL~K~La~~G~~SRr~ae~lI~~G~V~VnG~v~~~~~~~v~~~~~~i~v~g~~~~~~~~~~y~llnKP~G~v~s~~ 79 (248)
T COG1187 3 MRLNKFLAEAGVGSRREAEKLIEEGRVTVNGKVATLGGVVVDPDDDVVEVDGKRIELKEERVYLLLNKPRGYVSSTE 79 (248)
T ss_pred cchHHHHHHcCCCCHHHHHHHHHcCCEEECCEEeccCCeEeCCCCcEEEECCEEeeccccceEEEEECCCCeEeccc
Confidence 46677777777788999999998876632 222 234455555432 37888999999999999987
Done!