Query psy13817
Match_columns 164
No_of_seqs 254 out of 409
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 21:13:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jvm_A Uncharacterized protein 99.6 3.9E-16 1.3E-20 113.3 2.5 50 23-72 11-61 (80)
2 2jrr_A Uncharacterized protein 99.5 7E-16 2.4E-20 108.6 0.5 45 28-72 3-48 (67)
3 2jz8_A Uncharacterized protein 99.5 4.8E-15 1.7E-19 109.1 2.7 46 28-73 12-57 (87)
4 2jvm_A Uncharacterized protein 99.3 4.1E-13 1.4E-17 97.5 2.8 32 133-164 16-47 (80)
5 2jrr_A Uncharacterized protein 99.3 8.5E-13 2.9E-17 92.9 1.3 32 133-164 3-34 (67)
6 2jz8_A Uncharacterized protein 99.2 7.4E-12 2.5E-16 92.1 2.9 32 133-164 12-43 (87)
7 2odx_A Cytochrome C oxidase po 33.3 29 0.001 24.4 2.7 34 37-71 30-63 (80)
8 1v54_F VI, cytochrome C oxidas 23.0 50 0.0017 23.9 2.5 32 38-71 55-86 (98)
9 2y69_F Cytochrome C oxidase su 21.7 55 0.0019 25.0 2.5 32 38-71 86-117 (129)
10 1cn3_F Fragment of coat protei 20.0 42 0.0014 19.8 1.2 11 150-160 5-15 (29)
No 1
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=99.58 E-value=3.9e-16 Score=113.34 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=42.7
Q ss_pred HHHhhhhcCCCeeeeCceEEecCCCCCCCCCeEEEEcC-CCchhhhhhhHH
Q psy13817 23 FAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLR-PEISYIMSLLSL 72 (164)
Q Consensus 23 ~Ai~LI~e~p~~~v~~~~v~CDGG~galGHP~Vyinld-~~~~~vm~~Cr~ 72 (164)
+|.-.+...++|+|++++|+||||+|+||||+|||+|| ++...+|.||..
T Consensus 11 ~a~m~~~apevI~V~~~~V~CdGg~g~LGHPrVyL~ld~~~g~~~CpYCg~ 61 (80)
T 2jvm_A 11 SARMSIEAPETVVVSTWKVACDGGEGALGHPRVWLSIPHETGFVECGYCDR 61 (80)
T ss_dssp CCCCCCSCCSEEEESCSEEEECCCSTTCCCCCEEEECCTTTCEEECSSSSC
T ss_pred ccccccCCCCeEEECCcEEEcCCCCCCCCCCEEEEEccCCCCeEECCCCCC
Confidence 34444566778999999999999999999999999994 778899999975
No 2
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=99.54 E-value=7e-16 Score=108.62 Aligned_cols=45 Identities=27% Similarity=0.424 Sum_probs=39.6
Q ss_pred hhcCCCeeeeCceEEecCCCCCCCCCeEEEEcC-CCchhhhhhhHH
Q psy13817 28 IAEVPPKPCKERVVWCDGGSGPTGHPKVYINLR-PEISYIMSLLSL 72 (164)
Q Consensus 28 I~e~p~~~v~~~~v~CDGG~galGHP~Vyinld-~~~~~vm~~Cr~ 72 (164)
|...++|+|++++|+||||+|+||||+|||+|| ++....|.||.+
T Consensus 3 ~~ape~i~v~~r~v~CdGg~g~lgHPrVyl~ld~~~g~~~CpYCg~ 48 (67)
T 2jrr_A 3 IQAPETKIVDKSRVACDGGEGALGHPRVWLQIPEDTGWVECPYCDC 48 (67)
T ss_dssp CCCCEEEEESSSEEEEEESSTTSEEEEEEEECCTTTSEEEETTTTE
T ss_pred CCCCceEEECCCEEEeCCCCCCCCCCEEEEEccCCCCeEECCCCCC
Confidence 345567899999999999999999999999995 677889999975
No 3
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=99.50 E-value=4.8e-15 Score=109.08 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=42.8
Q ss_pred hhcCCCeeeeCceEEecCCCCCCCCCeEEEEcCCCchhhhhhhHHh
Q psy13817 28 IAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLSLL 73 (164)
Q Consensus 28 I~e~p~~~v~~~~v~CDGG~galGHP~Vyinld~~~~~vm~~Cr~l 73 (164)
.+++|+|+|+.++++||||+|+||||||||+|+++...+|.||...
T Consensus 12 ~~~~~~IeV~~~~v~CdG~~~plgHPrVyL~i~~~g~~~CpYCg~~ 57 (87)
T 2jz8_A 12 DLGYKIIEIGVKEFMCVGATQPFDHPHIFIDMGSTDEKICPYCSTL 57 (87)
T ss_dssp SSCCSEEECSCSEEECCCSSCSSSSSSCEEECTTCCEECCTTTCCE
T ss_pred CCCCCeEEEcCcEEEcCCCCCCCCCCEEEEEcCCCCeEECCCCCCE
Confidence 3589999999999999999999999999999999999999999753
No 4
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=99.33 E-value=4.1e-13 Score=97.49 Aligned_cols=32 Identities=34% Similarity=0.697 Sum_probs=29.2
Q ss_pred hhcCCCeeeeCcEEEecCCCCCCCCceeeeeC
Q psy13817 133 IAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164 (164)
Q Consensus 133 I~e~p~~~v~~r~v~CDGG~galGHP~VyInL 164 (164)
+...++|+|++++|+||||+|+||||+|||||
T Consensus 16 ~~apevI~V~~~~V~CdGg~g~LGHPrVyL~l 47 (80)
T 2jvm_A 16 IEAPETVVVSTWKVACDGGEGALGHPRVWLSI 47 (80)
T ss_dssp CSCCSEEEESCSEEEECCCSTTCCCCCEEEEC
T ss_pred cCCCCeEEECCcEEEcCCCCCCCCCCEEEEEc
Confidence 45567899999999999999999999999997
No 5
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=99.26 E-value=8.5e-13 Score=92.91 Aligned_cols=32 Identities=38% Similarity=0.765 Sum_probs=28.7
Q ss_pred hhcCCCeeeeCcEEEecCCCCCCCCceeeeeC
Q psy13817 133 IAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164 (164)
Q Consensus 133 I~e~p~~~v~~r~v~CDGG~galGHP~VyInL 164 (164)
|...++++|++++|+||||+|+||||+|||||
T Consensus 3 ~~ape~i~v~~r~v~CdGg~g~lgHPrVyl~l 34 (67)
T 2jrr_A 3 IQAPETKIVDKSRVACDGGEGALGHPRVWLQI 34 (67)
T ss_dssp CCCCEEEEESSSEEEEEESSTTSEEEEEEEEC
T ss_pred CCCCceEEECCCEEEeCCCCCCCCCCEEEEEc
Confidence 34556789999999999999999999999997
No 6
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=99.18 E-value=7.4e-12 Score=92.13 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=30.2
Q ss_pred hhcCCCeeeeCcEEEecCCCCCCCCceeeeeC
Q psy13817 133 IAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164 (164)
Q Consensus 133 I~e~p~~~v~~r~v~CDGG~galGHP~VyInL 164 (164)
.+++|+|+|++++++||||+|+||||||||||
T Consensus 12 ~~~~~~IeV~~~~v~CdG~~~plgHPrVyL~i 43 (87)
T 2jz8_A 12 DLGYKIIEIGVKEFMCVGATQPFDHPHIFIDM 43 (87)
T ss_dssp SSCCSEEECSCSEEECCCSSCSSSSSSCEEEC
T ss_pred CCCCCeEEEcCcEEEcCCCCCCCCCCEEEEEc
Confidence 45899999999999999999999999999997
No 7
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=33.25 E-value=29 Score=24.35 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=26.7
Q ss_pred eCceEEecCCCCCCCCCeEEEEcCCCchhhhhhhH
Q psy13817 37 KERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLS 71 (164)
Q Consensus 37 ~~~~v~CDGG~galGHP~Vyinld~~~~~vm~~Cr 71 (164)
+.|+|.|=|+ ++=-|=.+|+.|.+....-|..|.
T Consensus 30 ~~RiVGC~g~-p~d~h~v~W~~l~~g~~~RC~eCG 63 (80)
T 2odx_A 30 DYRYVGCTGS-PAGSHTIMWLKPTVNEVARCWECG 63 (80)
T ss_dssp SSCCEEESSS-TTCCSCCEEECCCTTCEEECSSSC
T ss_pred CCeEEeeeCC-CCCcceEEEEEecCCCCeECCCCC
Confidence 4699999887 344799999999887777776664
No 8
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...
Probab=22.96 E-value=50 Score=23.94 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=25.5
Q ss_pred CceEEecCCCCCCCCCeEEEEcCCCchhhhhhhH
Q psy13817 38 ERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLS 71 (164)
Q Consensus 38 ~~~v~CDGG~galGHP~Vyinld~~~~~vm~~Cr 71 (164)
.|+|.|=|. +=-|-.+|+.|.+..+.-|..|.
T Consensus 55 ~RiVGC~~~--~D~h~v~W~~l~~g~~~RC~eCG 86 (98)
T 1v54_F 55 KRIVGCICE--EDNSTVIWFWLHKGEAQRCPSCG 86 (98)
T ss_dssp EEEEEECCS--TTCSCCEEEEEESSSCEECTTTC
T ss_pred CeEEeecCC--CCCceeEEEEEeCCCceECCCCC
Confidence 589999865 44799999999777777777775
No 9
>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=21.69 E-value=55 Score=25.05 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=25.7
Q ss_pred CceEEecCCCCCCCCCeEEEEcCCCchhhhhhhH
Q psy13817 38 ERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLS 71 (164)
Q Consensus 38 ~~~v~CDGG~galGHP~Vyinld~~~~~vm~~Cr 71 (164)
.|+|.|=|. +=-|-.+|+.|.+..+.-|..|.
T Consensus 86 ~RiVGC~~~--~Dsh~v~Wf~L~kg~p~RCpeCG 117 (129)
T 2y69_F 86 KRIVGCICE--EDNSTVIWFWLHKGEAQRCPSCG 117 (129)
T ss_dssp EEEEEECCS--TTCSCCEEEEEESSSCEECTTTC
T ss_pred CeEEeecCC--CCCceeEEEEEeCCCceeCCCCC
Confidence 689999865 44799999999877777777775
No 10
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=19.99 E-value=42 Score=19.77 Aligned_cols=11 Identities=45% Similarity=1.011 Sum_probs=8.3
Q ss_pred CCCCCCCCcee
Q psy13817 150 GGSGPTGHPKV 160 (164)
Q Consensus 150 GG~galGHP~V 160 (164)
||+||.-|-+|
T Consensus 5 ggggaashqrv 15 (29)
T 1cn3_F 5 GGGGAASHQRV 15 (29)
T ss_dssp CCSTTTCCCCC
T ss_pred CCCcccccccc
Confidence 56678889877
Done!