Query psy13817
Match_columns 164
No_of_seqs 254 out of 409
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 21:14:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13817.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13817hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1urha1 c.46.1.2 (A:2-148) 3-m 55.0 8.1 0.00059 26.7 4.6 38 20-57 69-116 (147)
2 d1urha1 c.46.1.2 (A:2-148) 3-m 48.3 7.6 0.00055 26.8 3.5 40 123-162 67-116 (147)
3 d1v54f_ g.41.5.3 (F:) Cytochro 35.4 11 0.00078 25.9 2.5 33 37-71 54-86 (98)
4 d1m3ka2 c.95.1.1 (A:269-392) B 34.0 0.46 3.4E-05 34.3 -5.2 37 123-159 46-82 (124)
5 d1m3ka2 c.95.1.1 (A:269-392) B 33.0 0.56 4.1E-05 33.9 -4.9 37 18-54 46-82 (124)
6 d1ulqa2 c.95.1.1 (A:276-400) B 32.7 0.59 4.3E-05 33.8 -4.8 37 18-54 45-83 (125)
7 d1afwa2 c.95.1.1 (A:294-417) T 32.2 0.48 3.5E-05 34.2 -5.4 36 19-54 49-84 (124)
8 d1wdkc2 c.95.1.1 (C:264-391) F 31.1 0.9 6.6E-05 32.8 -4.1 36 19-54 48-86 (128)
9 d1rhsa1 c.46.1.2 (A:1-149) Rho 25.9 51 0.0037 22.4 4.9 8 50-57 118-125 (149)
10 d1urha2 c.46.1.2 (A:149-268) 3 25.5 29 0.0021 22.0 3.2 35 23-57 69-112 (120)
11 d1uara1 c.46.1.2 (A:2-144) Sul 20.1 7.1 0.00052 26.9 -0.9 38 125-162 62-109 (143)
No 1
>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}
Probab=55.00 E-value=8.1 Score=26.66 Aligned_cols=38 Identities=21% Similarity=0.141 Sum_probs=23.1
Q ss_pred ChHHHHhhhhcCCCeeeeCceEEecCCCC----------CCCCCeEEE
Q psy13817 20 NTQFAIDLIAEVPPKPCKERVVWCDGGSG----------PTGHPKVYI 57 (164)
Q Consensus 20 n~~~Ai~LI~e~p~~~v~~~~v~CDGG~g----------alGHP~Vyi 57 (164)
.+..-.+++.+.-+..-+.-++.|+|++. .+||..|+|
T Consensus 69 ~~~~~~~~l~~~Gi~~~~~vVvY~~~~~~~A~r~~~~L~~~G~~~V~v 116 (147)
T d1urha1 69 RPETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSI 116 (147)
T ss_dssp CHHHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEE
T ss_pred CHHHHHHHHHHhCcCCCCeEEEEeCCCcccchhHHHHHHhhcccceEE
Confidence 44555556666666444444556666554 169999887
No 2
>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}
Probab=48.32 E-value=7.6 Score=26.81 Aligned_cols=40 Identities=20% Similarity=0.104 Sum_probs=26.6
Q ss_pred CCChHHHHhhhhcCCCeeeeCcEEEecCCCC----------CCCCceeee
Q psy13817 123 HVNTQFAIDLIAEVPPKPCKERVVWCDGGSG----------PTGHPKVYI 162 (164)
Q Consensus 123 q~np~~Ai~LI~e~p~~~v~~r~v~CDGG~g----------alGHP~VyI 162 (164)
.+.+..-.+++.+.-+..-+.-|+.|+|++. .+||..|+|
T Consensus 67 ~p~~~~~~~~l~~~Gi~~~~~vVvY~~~~~~~A~r~~~~L~~~G~~~V~v 116 (147)
T d1urha1 67 LPRPETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSI 116 (147)
T ss_dssp CCCHHHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEE
T ss_pred CCCHHHHHHHHHHhCcCCCCeEEEEeCCCcccchhHHHHHHhhcccceEE
Confidence 3445555667777777665555666776654 369999986
No 3
>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos taurus) [TaxId: 9913]}
Probab=35.41 E-value=11 Score=25.95 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=26.2
Q ss_pred eCceEEecCCCCCCCCCeEEEEcCCCchhhhhhhH
Q psy13817 37 KERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLS 71 (164)
Q Consensus 37 ~~~~v~CDGG~galGHP~Vyinld~~~~~vm~~Cr 71 (164)
+.|+|.|=| ++=.|..+|+.|.+..+.-|-.|.
T Consensus 54 ~~RiVGC~~--~~D~h~v~W~~l~~g~p~RC~eCG 86 (98)
T d1v54f_ 54 NKRIVGCIC--EEDNSTVIWFWLHKGEAQRCPSCG 86 (98)
T ss_dssp SEEEEEECC--STTCSCCEEEEEESSSCEECTTTC
T ss_pred CceEEeecC--CCCCceeEEEEEeCCCCcccCCCC
Confidence 368999986 455899999999877777776664
No 4
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]}
Probab=34.04 E-value=0.46 Score=34.34 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=24.2
Q ss_pred CCChHHHHhhhhcCCCeeeeCcEEEecCCCCCCCCce
Q psy13817 123 HVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPK 159 (164)
Q Consensus 123 q~np~~Ai~LI~e~p~~~v~~r~v~CDGG~galGHP~ 159 (164)
+.|+-||-.-++-..---++..++..+||.=|||||.
T Consensus 46 EinEAFA~q~la~~~~l~id~~kvN~~GGaiAlGHP~ 82 (124)
T d1m3ka2 46 EANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPI 82 (124)
T ss_dssp EECCSBHHHHHHHHHHHCCCGGGBSTTCCHHHHCCCT
T ss_pred HhcccchhheeeehHhhCCChhhcCCCCCccccccCc
Confidence 5566666554433322335667788899988999994
No 5
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]}
Probab=33.01 E-value=0.56 Score=33.87 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=24.2
Q ss_pred ccChHHHHhhhhcCCCeeeeCceEEecCCCCCCCCCe
Q psy13817 18 HVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPK 54 (164)
Q Consensus 18 qvn~~~Ai~LI~e~p~~~v~~~~v~CDGG~galGHP~ 54 (164)
+.|+-||-.-++-..-.-++..++..+||.=|||||.
T Consensus 46 EinEAFA~q~la~~~~l~id~~kvN~~GGaiAlGHP~ 82 (124)
T d1m3ka2 46 EANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPI 82 (124)
T ss_dssp EECCSBHHHHHHHHHHHCCCGGGBSTTCCHHHHCCCT
T ss_pred HhcccchhheeeehHhhCCChhhcCCCCCccccccCc
Confidence 3455566554433333345667889999888999993
No 6
>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]}
Probab=32.72 E-value=0.59 Score=33.77 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=22.1
Q ss_pred ccChHHHHhhhhc--CCCeeeeCceEEecCCCCCCCCCe
Q psy13817 18 HVNTQFAIDLIAE--VPPKPCKERVVWCDGGSGPTGHPK 54 (164)
Q Consensus 18 qvn~~~Ai~LI~e--~p~~~v~~~~v~CDGG~galGHP~ 54 (164)
+.|.-||-.-++- .--...+..++..+||.=|||||.
T Consensus 45 EinEAFAaq~l~~~~~~~l~~d~~kvN~~GGaIAlGHP~ 83 (125)
T d1ulqa2 45 ELNEAFAAQALAVLREWSLSMEDQRLNPNGGAIALGHPL 83 (125)
T ss_dssp EECCSBHHHHHHHHHHHTCCTTCTTBSTTCCHHHHCCCH
T ss_pred eeccccchhHHHHHHHhhccCchhhcCCCCCcccccCCc
Confidence 3466666443211 111234556789999888999993
No 7
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.16 E-value=0.48 Score=34.18 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=23.3
Q ss_pred cChHHHHhhhhcCCCeeeeCceEEecCCCCCCCCCe
Q psy13817 19 VNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPK 54 (164)
Q Consensus 19 vn~~~Ai~LI~e~p~~~v~~~~v~CDGG~galGHP~ 54 (164)
.|.-||..-++-..-..++..++..+||.=|||||.
T Consensus 49 inEAFA~q~l~~~~~l~id~~kvN~~GGaiAlGHP~ 84 (124)
T d1afwa2 49 INEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPL 84 (124)
T ss_dssp ECCSBHHHHHHHHHHHTCCGGGBSTTCCHHHHCBCT
T ss_pred eccchhHHHHHHHHHcCCChhhccccCccceecCCc
Confidence 355555443333333345677899999988999995
No 8
>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]}
Probab=31.07 E-value=0.9 Score=32.83 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=23.3
Q ss_pred cChHHHHh---hhhcCCCeeeeCceEEecCCCCCCCCCe
Q psy13817 19 VNTQFAID---LIAEVPPKPCKERVVWCDGGSGPTGHPK 54 (164)
Q Consensus 19 vn~~~Ai~---LI~e~p~~~v~~~~v~CDGG~galGHP~ 54 (164)
.|+-||-. .+.+..+...+..++..+||.=|||||.
T Consensus 48 inEAFA~q~l~~~~~~~~~~~~~ekvN~~GGaiAlGHP~ 86 (128)
T d1wdkc2 48 LNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPF 86 (128)
T ss_dssp ECCSBHHHHHHHHHHTTCGGGHHHHBSTTCCHHHHCCCH
T ss_pred eecccchhhhhhhhhcccccCCcceecCCCCcccccccc
Confidence 35545444 3344454444556899999988999993
No 9
>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.89 E-value=51 Score=22.36 Aligned_cols=8 Identities=38% Similarity=0.592 Sum_probs=6.7
Q ss_pred CCCCeEEE
Q psy13817 50 TGHPKVYI 57 (164)
Q Consensus 50 lGHP~Vyi 57 (164)
+||..|+|
T Consensus 118 ~G~~~V~v 125 (149)
T d1rhsa1 118 FGHRTVSV 125 (149)
T ss_dssp TTCCCEEE
T ss_pred cCCCceEE
Confidence 69999886
No 10
>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}
Probab=25.54 E-value=29 Score=21.98 Aligned_cols=35 Identities=17% Similarity=0.093 Sum_probs=20.2
Q ss_pred HHHhhhhcCCCeeeeCceEEecCCCCC---------CCCCeEEE
Q psy13817 23 FAIDLIAEVPPKPCKERVVWCDGGSGP---------TGHPKVYI 57 (164)
Q Consensus 23 ~Ai~LI~e~p~~~v~~~~v~CDGG~ga---------lGHP~Vyi 57 (164)
.-.+++.+..+-.-+.=++.|.+|.-| |||+.|++
T Consensus 69 ~~~~~~~~~g~~~~~~ii~yC~sG~~A~~~~~~L~~lG~~~v~~ 112 (120)
T d1urha2 69 ELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKL 112 (120)
T ss_dssp HHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEE
T ss_pred HhhhhhhhcccCccCceEEEccchhHHHHHHHHHHHcCCCCceE
Confidence 333444444443333346789776542 79988876
No 11
>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}
Probab=20.15 E-value=7.1 Score=26.86 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=23.6
Q ss_pred ChHHHHhhhhcCCCeeeeCcEEEecCCCC----------CCCCceeee
Q psy13817 125 NTQFAIDLIAEVPPKPCKERVVWCDGGSG----------PTGHPKVYI 162 (164)
Q Consensus 125 np~~Ai~LI~e~p~~~v~~r~v~CDGG~g----------alGHP~VyI 162 (164)
.+..-.+++.+.-+..-+.-|+.|++|+. .+||+.|++
T Consensus 62 ~~~~l~~~~~~~Gi~~~~~iVvy~~~~~~~a~~~~~~l~~~G~~~V~v 109 (143)
T d1uara1 62 SEEEFAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRL 109 (143)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEE
T ss_pred hhHHHHHHhhhhccCCCceEEEecCCCcccchhHHHHHHHhCCceEEE
Confidence 34444456666655554455677777653 279999886
Done!