RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13817
(164 letters)
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Rhodobacter sphaeroides 2}
Length = 80
Score = 65.8 bits (160), Expect = 4e-15
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 13 VDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRPEISYI 66
+ ++ + A I V CDGG G GHP+V++++ E ++
Sbjct: 1 MRRQPKTRQESARMSIEAPETVVVSTWKVACDGGEGALGHPRVWLSIPHETGFV 54
Score = 63.1 bits (153), Expect = 3e-14
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 118 VDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
+ ++ + A I V CDGG G GHP+V++++
Sbjct: 1 MRRQPKTRQESARMSIEAPETVVVSTWKVACDGGEGALGHPRVWLSI 47
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural
genomics, PSI-2, protein structure initiative; NMR
{Silicibacter pomeroyi}
Length = 67
Score = 41.2 bits (96), Expect = 6e-06
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 38 ERVVWCDGGSGPTGHPKVYINLRPEISYI 66
+ V CDGG G GHP+V++ + + ++
Sbjct: 13 KSRVACDGGEGALGHPRVWLQIPEDTGWV 41
Score = 39.3 bits (91), Expect = 3e-05
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 143 ERVVWCDGGSGPTGHPKVYINL 164
+ V CDGG G GHP+V++ +
Sbjct: 13 KSRVACDGGEGALGHPRVWLQI 34
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural
genomics, unknown function, PSI-2, protein structure
initiative; NMR {Bartonella henselae str}
Length = 87
Score = 34.7 bits (79), Expect = 0.002
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 39 RVVWCDGGSGPTGHPKVYINL 59
+ C G + P HP ++I++
Sbjct: 23 KEFMCVGATQPFDHPHIFIDM 43
Score = 34.7 bits (79), Expect = 0.002
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 144 RVVWCDGGSGPTGHPKVYINL 164
+ C G + P HP ++I++
Sbjct: 23 KEFMCVGATQPFDHPHIFIDM 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.093
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 96 FNDIETHTGQKFEKD-DYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCK-ERVVWC 148
+ DI + F + D + V+ D K + ++ ID I R+ W
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQ--DMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 31.2 bits (71), Expect = 0.13
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 71 SLLKQTRVN-RLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFV 118
+ Q + R+IVP+ L++ F + + RF+
Sbjct: 160 TWFTQLKEGGRVIVPINLKLSRRQPAF--LFKKKDPYLVGNYKLETRFI 206
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 28.2 bits (63), Expect = 1.1
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 100 ETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGP 154
+ T K+ + + DK V Q+ DL+ + P+P E ++ D G G
Sbjct: 18 QGMTNLGTAKNFWDATLYQDKHSFV-WQYGEDLLQLLNPQP-GEFIL--DLGCGT 68
Score = 27.4 bits (61), Expect = 2.5
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 1 KFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGP 49
K+ + + DK V Q+ DL+ + P+P E ++ D G G
Sbjct: 24 GTAKNFWDATLYQDKHSFV-WQYGEDLLQLLNPQP-GEFIL--DLGCGT 68
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 26.8 bits (60), Expect = 3.5
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 82 IVPLTRTLAKDVAPFN 97
I LT++ A D +
Sbjct: 193 ITGLTKSTALDGRMHD 208
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 26.0 bits (58), Expect = 5.1
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 20/56 (35%)
Query: 71 SLLKQTRVN-RLIVP-------LTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFV 118
+L+ Q L++P L R G +F D VRFV
Sbjct: 159 ALMTQLDEGGILVLPVGEEHQYLKRV------------RRRGGEFIIDTVEAVRFV 202
>2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex,
oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter
sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A*
3fyi_A* 1m57_A* 3oma_A* 3om3_A* 3omi_A* 3omn_A* 3hb3_A*
1ar1_A* 3ehb_A* 1qle_A*
Length = 566
Score = 26.5 bits (59), Expect = 5.5
Identities = 8/24 (33%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 51 GHPKVYINLRPE---ISYIMSLLS 71
GHP+VYI + P +S++++ +
Sbjct: 283 GHPEVYIIVLPAFGIVSHVIATFA 306
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 25.9 bits (58), Expect = 5.9
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 82 IVPLTRTLAKDVAPFN 97
+ TR LA D+
Sbjct: 161 NIGFTRALASDLGKDG 176
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 26.0 bits (58), Expect = 6.0
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 82 IVPLTRTLAKDVAPFN 97
++ ++TLA +V N
Sbjct: 164 LMMFSKTLATEVIKDN 179
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 26.1 bits (58), Expect = 6.0
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 14/54 (25%)
Query: 71 SLLKQTRVN-RLIVPL-----TRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFV 118
L++Q ++ +LI+P+ + L + T + ++ V FV
Sbjct: 174 PLIEQLKIGGKLIIPVGSYHLWQELLE--------VRKTKDGIKIKNHGGVAFV 219
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 26.0 bits (58), Expect = 6.7
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 71 SLLKQTRVN-RLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFV 118
L++Q + +L++P+ R L + V + G + D PV FV
Sbjct: 162 PLIRQLKDGGKLLMPVGRYLQRLV-----LAEKRGDEIIIKDCGPVAFV 205
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 26.0 bits (58), Expect = 6.7
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 82 IVPLTRTLAKDVAPFN 97
I LT++ + D +
Sbjct: 184 ITGLTKSTSLDGRVHD 199
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 25.7 bits (57), Expect = 7.7
Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 71 SLLKQTRVN-RLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFV 118
+Q + +I+P+ + + G ++ V F
Sbjct: 150 KPYEQLKEGGIMILPIGVGRVQKLYKV----IKKGNSPSLENLGEVMFG 194
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 25.6 bits (57), Expect = 7.8
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 85 LTRTLAKDVAPFN 97
L R++A + AP
Sbjct: 169 LVRSMAFEFAPKG 181
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 25.6 bits (57), Expect = 8.4
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 85 LTRTLAKDVAPFN 97
+ RTLA ++AP
Sbjct: 167 VVRTLALELAPHG 179
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 25.6 bits (57), Expect = 8.4
Identities = 3/16 (18%), Positives = 10/16 (62%)
Query: 82 IVPLTRTLAKDVAPFN 97
++ +++TLA ++
Sbjct: 167 LLAMSQTLATELGEKG 182
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 25.7 bits (57), Expect = 8.8
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 82 IVPLTRTLAKDVAPFN 97
+ T LA +AP +
Sbjct: 185 VDSYTLQLAAQLAPQS 200
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 25.5 bits (57), Expect = 8.9
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 82 IVPLTRTLAKDVAPFN 97
L R +A D+ N
Sbjct: 166 ASHLVRNMAFDLGEKN 181
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 25.6 bits (57), Expect = 9.7
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 82 IVPLTRTLAKDVAPFN 97
++ LTR A + F
Sbjct: 181 VMALTRCSAIEAVEFG 196
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.440
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,639,676
Number of extensions: 151178
Number of successful extensions: 443
Number of sequences better than 10.0: 1
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 37
Length of query: 164
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 78
Effective length of database: 4,300,587
Effective search space: 335445786
Effective search space used: 335445786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)