RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13817
         (164 letters)



>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp.,
           UC5319 [TaxId: 1931]}
          Length = 311

 Score = 25.9 bits (56), Expect = 2.2
 Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 83  VPLTRTLAKDVAPF-NDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAE 135
           +     +A DV    NDI +   ++   +    V  + +E   +   ++  +  
Sbjct: 202 MSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREHGWSKSRSVSHMQN 255


>d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human
           papillomavirus type 16 [TaxId: 333760]}
          Length = 455

 Score = 25.8 bits (57), Expect = 2.8
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 10/29 (34%)

Query: 35  PCKERVVW-CDG---------GSGPTGHP 53
           P  +R+VW C G         G G +GHP
Sbjct: 74  PDTQRLVWACVGVEVGRGQPLGVGISGHP 102



 Score = 25.8 bits (57), Expect = 2.8
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 10/29 (34%)

Query: 140 PCKERVVW-CDG---------GSGPTGHP 158
           P  +R+VW C G         G G +GHP
Sbjct: 74  PDTQRLVWACVGVEVGRGQPLGVGISGHP 102


>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
           {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 215

 Score = 25.2 bits (54), Expect = 4.2
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 34  KPCKERVVWCDGGSG-PTGHPKVYINLRPEISYIMSLLSLLKQTRVN-RLIVPLTRTLAK 91
                 V+  DG  G P   P   I +      I     L++Q ++  +LI+P+      
Sbjct: 125 GVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPE--PLIEQLKIGGKLIIPVGSYHLW 182

Query: 92  DVAPFNDIETHTGQKFEKDDYRPVRFV 118
                      T    +  ++  V FV
Sbjct: 183 QELL---EVRKTKDGIKIKNHGGVAFV 206


>d1imva_ e.1.1.1 (A:) Pigment epithelium-derived factor, PEDF {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 383

 Score = 25.2 bits (54), Expect = 4.9
 Identities = 10/44 (22%), Positives = 15/44 (34%)

Query: 103 TGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVV 146
           TG   E++D      V+K     + F  DL            V+
Sbjct: 1   TGALVEEEDPFFKVPVNKLAAAVSNFGYDLYRVRSSMSPTTNVL 44


>d2av5a1 d.58.59.1 (A:15-120) RNase P protein component 2, Rnp2
          {Pyrococcus furiosus [TaxId: 2261]}
          Length = 106

 Score = 23.5 bits (51), Expect = 9.5
 Identities = 5/33 (15%), Positives = 15/33 (45%)

Query: 13 VDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDG 45
           D+    +  F++ L++++       +V+   G
Sbjct: 58 SDRNHVYDVIFSLTLVSDINGNKAIIKVLGVSG 90



 Score = 23.5 bits (51), Expect = 9.5
 Identities = 5/33 (15%), Positives = 15/33 (45%)

Query: 118 VDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDG 150
            D+    +  F++ L++++       +V+   G
Sbjct: 58  SDRNHVYDVIFSLTLVSDINGNKAIIKVLGVSG 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.140    0.440 

Gapped
Lambda     K      H
   0.267   0.0666    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 662,396
Number of extensions: 30404
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 12
Length of query: 164
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 85
Effective length of database: 1,322,926
Effective search space: 112448710
Effective search space used: 112448710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.8 bits)