BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13818
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 29/140 (20%)
Query: 1 VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
VGT ++P L ++D L G V+G G LP I ++ I +LL R++G + E
Sbjct: 291 VGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEE----------- 339
Query: 61 YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
K++ L EVL++NIG+ +T G + + + D+A I L P+C
Sbjct: 340 ------------------LKIEPLRTGEVLMLNIGTATTAGVITSARGDIADIKLKLPIC 381
Query: 121 TEVNEKIALSRRVEKHWSLI 140
E+ +++A+SRRV W LI
Sbjct: 382 AEIGDRVAISRRVGSRWRLI 401
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 157 NESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
NE CPQPQT EHL A+EI+ + III+QNKIDLV E QA E +EQI +FV+
Sbjct: 115 NEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVK 165
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 29/140 (20%)
Query: 1 VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
+GTK++P L + D + G V+G G LP ++ +L + HLL+R++G E
Sbjct: 294 IGTKLDPYLTKGDLMAGNVVGKPGKLPPVWTDLRLEVHLLERVVGTEQE----------- 342
Query: 61 YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
V+ + R EVLL+N+G+ T G V A D ++ L PVC
Sbjct: 343 ------------------LNVEPIKRKEVLLLNVGTARTMGLVTALGKDEIELKLQIPVC 384
Query: 121 TEVNEKIALSRRVEKHWSLI 140
E E++A+SR++ W LI
Sbjct: 385 AEPGERVAISRQIGSRWRLI 404
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 16/104 (15%)
Query: 116 TNPVCTEVNEKIALSRRVEKHWSLI-----EGTVTTKVLSTRKRTG-------NESCPQP 163
T+P+C + RRV S I E +TT + G NE CP+P
Sbjct: 69 TSPICPYCGHETEFIRRV----SFIDSPGHEALMTTMLAGASLMDGAILVIAANEPCPRP 124
Query: 164 QTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
QT EHL A++I+ K+III QNKI+LV + +A E + QI +F++
Sbjct: 125 QTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIK 168
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 29/140 (20%)
Query: 1 VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
VGTK++P L + D + G V+G G LP ++ L + HLL+R++G E
Sbjct: 293 VGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQE----------- 341
Query: 61 YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
KV+ + R EVLL+N+G+ T G V D ++ L PVC
Sbjct: 342 ------------------LKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVC 383
Query: 121 TEVNEKIALSRRVEKHWSLI 140
E +++A+SR++ W LI
Sbjct: 384 AEPGDRVAISRQIGSRWRLI 403
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 16/104 (15%)
Query: 116 TNPVCTEVNEKIALSRRVEKHWSLI-----EGTVTTKVLSTRKRTG-------NESCPQP 163
T+PVC + RRV S I E +TT + G NE CP+P
Sbjct: 68 TSPVCPYCGHETEFVRRV----SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRP 123
Query: 164 QTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
QT EHL A++I+ K+III QNKI+LV + +A E + QI +F++
Sbjct: 124 QTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE 167
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 29/140 (20%)
Query: 1 VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
VGTK++P L + D + G V+G G LP ++ L + HLL+R++G E
Sbjct: 293 VGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQE----------- 341
Query: 61 YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
KV+ + R EVLL+N+G+ T G V D ++ L PVC
Sbjct: 342 ------------------LKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVC 383
Query: 121 TEVNEKIALSRRVEKHWSLI 140
E +++A+SR++ W LI
Sbjct: 384 AEPGDRVAISRQIGSRWRLI 403
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 16/104 (15%)
Query: 116 TNPVCTEVNEKIALSRRVEKHWSLI-----EGTVTTKVLSTRKRTG-------NESCPQP 163
T+PVC + RRV S I E +TT + G NE CP+P
Sbjct: 68 TSPVCPYCGHETEFVRRV----SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRP 123
Query: 164 QTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
QT EHL A++I+ K+III QNKI+LV + +A E + QI +F++
Sbjct: 124 QTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE 167
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 29/140 (20%)
Query: 1 VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
VGTK++P L + D G V+G G LP ++ L + HLL+R++G E
Sbjct: 293 VGTKLDPYLTKGDLXAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQE----------- 341
Query: 61 YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
KV+ + R EVLL+N+G+ T G V D ++ L PVC
Sbjct: 342 ------------------LKVEPIKRKEVLLLNVGTARTXGLVTGLGKDEIEVKLQIPVC 383
Query: 121 TEVNEKIALSRRVEKHWSLI 140
E +++A+SR++ W LI
Sbjct: 384 AEPGDRVAISRQIGSRWRLI 403
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 16/104 (15%)
Query: 116 TNPVCTEVNEKIALSRRVEKHWSLI-----EGTVTTKVLSTRKRTG-------NESCPQP 163
T+PVC + RRV S I E TT + G NE CP+P
Sbjct: 68 TSPVCPYCGHETEFVRRV----SFIDAPGHEALXTTXLAGASLXDGAILVIAANEPCPRP 123
Query: 164 QTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
QT EHL A++I+ K+III QNKI+LV + +A E + QI +F++
Sbjct: 124 QTREHLXALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE 167
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 155 TGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
NE PQPQT EH A+ I+ +K++II+QNK+D+V + +A Q+ QI +F +
Sbjct: 107 AANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 30/141 (21%)
Query: 1 VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
+GT ++P+L +AD L+G ++ A + + I Y+LL+R++G
Sbjct: 285 IGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGA-------------- 330
Query: 61 YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
K+ KV + E L++++GS +T G V + K D ++ L PV
Sbjct: 331 ---------------KEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVA 375
Query: 121 TEVNE-KIALSRRVEKHWSLI 140
N + +SR++ W +I
Sbjct: 376 VWSNNIRTVISRQIAGRWRMI 396
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 156 GNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
NE PQPQT EH A+ I+ +K++II+QNK+D+V + +A Q+ QI +F +
Sbjct: 119 ANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 170
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 30/141 (21%)
Query: 1 VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
+GT ++P+L +AD L+G ++ A + + I Y+LL+R++G
Sbjct: 296 IGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGA-------------- 341
Query: 61 YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
K+ KV + E L++++GS +T G V + K D ++ L PV
Sbjct: 342 ---------------KEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVA 386
Query: 121 TEVNE-KIALSRRVEKHWSLI 140
N + +SR++ W +I
Sbjct: 387 VWSNNIRTVISRQIAGRWRMI 407
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 156 GNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
NE PQPQT EH A+ I+ +K++II+QNK+D+V + +A Q+ QI +F +
Sbjct: 120 ANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 171
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 30/141 (21%)
Query: 1 VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
+GT ++P+L +AD L+G ++ A + + I Y+LL+R++G
Sbjct: 297 IGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGA-------------- 342
Query: 61 YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
K+ KV + E L++++GS +T G V + K D ++ L PV
Sbjct: 343 ---------------KEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVA 387
Query: 121 TEVNE-KIALSRRVEKHWSLI 140
N + +SR++ W +I
Sbjct: 388 VWSNNIRTVISRQIAGRWRMI 408
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 156 GNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
NE PQPQT EH A+ I+ +K++II+QNK+D+V + +A Q+ QI +F +
Sbjct: 114 ANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 165
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 30/141 (21%)
Query: 1 VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
+GT ++P+L +AD L+G ++ A + + I Y+LL+R++G
Sbjct: 291 IGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGA-------------- 336
Query: 61 YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
K+ KV + E L++++GS +T G V + K D ++ L PV
Sbjct: 337 ---------------KEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVA 381
Query: 121 TEVNE-KIALSRRVEKHWSLI 140
N + +SR++ W +I
Sbjct: 382 VWSNNIRTVISRQIAGRWRMI 402
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192
P PQT EH+ + + +I++ NK+D+V +
Sbjct: 113 PMPQTREHILLARQVGVPYIVVFMNKVDMVDD 144
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192
P PQT EH+ + + +I++ NK+D+V +
Sbjct: 112 PMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192
P PQT EH+ + + +I++ NK+D+V +
Sbjct: 112 PMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192
P PQT EH+ + + +I++ NK+D+V +
Sbjct: 112 PMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192
P PQT EH+ + + +I++ NK+D+V +
Sbjct: 112 PMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192
P PQT EH+ + + +I++ NK+D+V +
Sbjct: 112 PMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192
P PQT EH+ + + +I++ NK+D+V +
Sbjct: 112 PMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192
P PQT EH+ + + +I++ NK+D+V +
Sbjct: 112 PMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192
P PQT EH+ + + +I++ NK+D+V +
Sbjct: 112 PMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192
P PQT EH+ + + +I++ NK+D+V +
Sbjct: 112 PMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANE 197
P PQT EHL + ++H+++ NK D V++ + E
Sbjct: 114 PXPQTREHLLLARQIGVEHVVVYVNKADAVQDSEXVE 150
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANE 197
P PQT EHL + ++H+++ NK D V++ + E
Sbjct: 103 PMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVE 139
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 148 VLSTRK---RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQ 201
V+S RK TG E QT EH + +KH+I+L NK+D +NE++E+
Sbjct: 125 VISARKGEFETGFEK--GGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEE 179
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 164 QTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIV 203
QT EH+ + M L +I+ NK+DL + +++++IV
Sbjct: 131 QTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIV 170
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDL 189
P PQT EH+ + + +II+ NK D+
Sbjct: 396 PMPQTREHILLGRQVGVPYIIVFLNKCDM 424
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDL 189
P PQT EH+ + + +II+ NK D+
Sbjct: 97 PMPQTREHILLGRQVGVPYIIVFLNKCDM 125
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDL 189
P PQT EH+ + + +II+ NK D+
Sbjct: 53 PMPQTREHILLGRQVGVPYIIVFLNKCDM 81
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDL 189
P PQT EH+ + + +II+ NK D+
Sbjct: 111 PMPQTREHILLGRQVGVPYIIVFLNKCDM 139
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 27.7 bits (60), Expect = 5.3, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 58 EISYHLLKRLLGVR--MEGDKKGAKVQKLTRNEVLLVNIGS 96
E S L+++ LG E + KGA Q++ NE++LV GS
Sbjct: 227 EASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGS 267
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDL 189
P PQT EH+ + + +II+ NK D+
Sbjct: 112 PMPQTREHILLGRQVGVPYIIVFLNKCDM 140
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDL 189
P PQT EH+ + + +II+ NK D+
Sbjct: 53 PMPQTREHILLGRQVGVPYIIVFLNKCDM 81
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDL 189
P PQT EH+ + + +II+ NK D+
Sbjct: 111 PMPQTREHILLGRQVGVPYIIVFLNKCDM 139
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDL 189
P PQT EH+ + + +II+ NK D+
Sbjct: 111 PMPQTREHILLGRQVGVPYIIVFLNKCDM 139
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 27.3 bits (59), Expect = 5.4, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 58 EISYHLLKRLLGVR--MEGDKKGAKVQKLTRNEVLLVNIGS 96
E S L+++ LG E + KGA Q++ NE++LV GS
Sbjct: 228 EASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGS 268
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDL 189
P PQT EH+ + + +II+ NK D+
Sbjct: 112 PMPQTREHILLGRQVGVPYIIVFLNKCDM 140
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDL 189
P PQT EH+ + + +II+ NK D+
Sbjct: 103 PMPQTREHILLGRQVGVPYIIVFLNKCDM 131
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 164 QTSEHLAAIEIMKLKHIIILQNKIDLVKE 192
QT EH+ + +++I++ NK+D+V +
Sbjct: 115 QTREHILLARQVGVRYIVVFMNKVDMVDD 143
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDL 189
P PQT EH+ + + +II+ NK D+
Sbjct: 396 PMPQTREHILLGRQVGVPYIIVFLNKCDM 424
>pdb|2Q04|A Chain A, Crystal Structure Of Acetoin Utilization Protein
(Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
2.33 A Resolution
pdb|2Q04|B Chain B, Crystal Structure Of Acetoin Utilization Protein
(Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
2.33 A Resolution
pdb|2Q04|C Chain C, Crystal Structure Of Acetoin Utilization Protein
(Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
2.33 A Resolution
pdb|2Q04|D Chain D, Crystal Structure Of Acetoin Utilization Protein
(Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
2.33 A Resolution
pdb|2Q04|E Chain E, Crystal Structure Of Acetoin Utilization Protein
(Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
2.33 A Resolution
pdb|2Q04|F Chain F, Crystal Structure Of Acetoin Utilization Protein
(Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
2.33 A Resolution
Length = 211
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 140 IEGTVTTKVLSTRKRTGNESCPQPQTSEHLAAIEIMKLKH--IIILQNKIDLV 190
IEG VT+++L+T K + + +H A +EI L+ III + D++
Sbjct: 21 IEGPVTSQILATYKLDPGLTAFRQPAEQHEALVEIAALEEGRIIIARQGNDII 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,453,521
Number of Sequences: 62578
Number of extensions: 199306
Number of successful extensions: 519
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 60
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)