Query psy13818
Match_columns 207
No_of_seqs 229 out of 1488
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 21:15:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sjy_A Translation initiation 99.7 2.1E-18 7.1E-23 154.4 5.8 114 2-144 286-401 (403)
2 1s0u_A EIF-2-gamma, translatio 99.6 1.7E-16 5.7E-21 142.3 7.5 115 2-145 292-407 (408)
3 1kk1_A EIF2gamma; initiation o 99.6 3.5E-16 1.2E-20 140.0 7.0 114 3-145 295-409 (410)
4 1kk1_A EIF2gamma; initiation o 99.5 1.3E-14 4.4E-19 129.9 6.4 88 114-207 66-167 (410)
5 1s0u_A EIF-2-gamma, translatio 99.5 3.2E-14 1.1E-18 127.5 6.0 88 114-207 64-165 (408)
6 3sjy_A Translation initiation 99.3 3.9E-12 1.3E-16 113.8 7.1 76 125-206 75-158 (403)
7 3j2k_7 ERF3, eukaryotic polype 99.3 4.9E-12 1.7E-16 115.2 7.8 83 109-203 84-181 (439)
8 1wb1_A Translation elongation 99.2 2.7E-12 9.1E-17 118.6 2.3 75 124-206 72-154 (482)
9 2elf_A Protein translation elo 99.2 4.3E-11 1.5E-15 107.3 8.5 88 106-207 46-142 (370)
10 1d2e_A Elongation factor TU (E 99.2 3.5E-11 1.2E-15 107.6 7.2 77 123-206 64-149 (397)
11 1r5b_A Eukaryotic peptide chai 99.1 3.3E-11 1.1E-15 110.6 6.1 77 124-206 120-214 (467)
12 1zun_B Sulfate adenylate trans 99.1 1.1E-10 3.7E-15 105.5 7.8 86 109-206 93-188 (434)
13 2c78_A Elongation factor TU-A; 99.1 1.9E-10 6.5E-15 102.7 7.5 76 124-206 74-158 (405)
14 3mca_A HBS1, elongation factor 99.1 1E-10 3.4E-15 111.0 6.0 77 124-206 254-346 (592)
15 1jny_A EF-1-alpha, elongation 99.1 1.1E-10 3.6E-15 105.8 5.2 77 123-206 82-177 (435)
16 1f60_A Elongation factor EEF1A 99.0 8.8E-11 3E-15 107.5 3.0 76 124-206 84-176 (458)
17 3p26_A Elongation factor 1 alp 99.0 3.3E-10 1.1E-14 103.9 6.4 86 109-205 100-201 (483)
18 3avx_A Elongation factor TS, e 98.9 1.8E-09 6.3E-14 111.2 6.9 77 123-206 357-442 (1289)
19 3izq_1 HBS1P, elongation facto 98.9 2.5E-09 8.5E-14 101.9 6.6 65 123-193 243-321 (611)
20 3j25_A Tetracycline resistance 98.7 1.1E-08 3.8E-13 97.6 4.4 83 120-206 62-147 (638)
21 1zo1_I IF2, translation initia 98.5 7.6E-08 2.6E-12 90.5 6.0 62 123-192 49-118 (501)
22 3vqt_A RF-3, peptide chain rel 98.5 1.5E-07 5.1E-12 88.7 7.2 82 121-206 96-180 (548)
23 4fn5_A EF-G 1, elongation fact 98.3 1.9E-06 6.4E-11 83.0 8.7 93 110-206 70-165 (709)
24 3izy_P Translation initiation 98.2 4.7E-07 1.6E-11 85.7 3.0 62 123-192 50-119 (537)
25 2h5e_A Peptide chain release f 98.1 3.7E-06 1.3E-10 78.9 6.1 80 123-206 80-162 (529)
26 2ywe_A GTP-binding protein LEP 98.1 3E-06 1E-10 81.3 5.4 76 126-205 74-152 (600)
27 3cb4_D GTP-binding protein LEP 98.0 5.3E-06 1.8E-10 79.3 6.5 77 125-205 71-150 (599)
28 1g7s_A Translation initiation 98.0 9.1E-06 3.1E-10 77.5 8.0 63 126-191 71-136 (594)
29 2rdo_7 EF-G, elongation factor 97.8 7.3E-05 2.5E-09 72.3 9.2 79 124-206 81-162 (704)
30 3tr5_A RF-3, peptide chain rel 97.7 7E-05 2.4E-09 70.3 7.7 80 123-206 80-162 (528)
31 2elf_A Protein translation elo 97.6 8.6E-05 2.9E-09 66.4 6.8 93 10-144 263-369 (370)
32 1d2e_A Elongation factor TU (E 97.5 0.00016 5.6E-09 64.4 6.4 98 9-145 275-383 (397)
33 1dar_A EF-G, elongation factor 97.4 0.00022 7.4E-09 68.8 6.7 80 123-206 75-157 (691)
34 2c78_A Elongation factor TU-A; 97.3 0.00027 9.1E-09 62.9 5.8 97 10-145 294-401 (405)
35 1wb1_A Translation elongation 97.2 0.00055 1.9E-08 63.1 7.3 94 13-145 273-391 (482)
36 2dy1_A Elongation factor G; tr 97.2 0.00029 9.8E-09 67.6 5.5 78 124-206 73-153 (665)
37 2xex_A Elongation factor G; GT 97.2 0.0005 1.7E-08 66.3 6.8 80 123-206 73-155 (693)
38 1n0u_A EF-2, elongation factor 97.1 0.00026 8.9E-09 69.8 3.7 64 124-190 97-163 (842)
39 1zun_B Sulfate adenylate trans 96.8 0.0019 6.4E-08 58.2 6.4 91 13-144 315-432 (434)
40 2lkc_A Translation initiation 96.7 0.0044 1.5E-07 46.4 7.1 66 124-192 54-122 (178)
41 4dhe_A Probable GTP-binding pr 96.6 0.0027 9.2E-08 49.9 5.3 49 154-204 123-171 (223)
42 1jny_A EF-1-alpha, elongation 96.4 0.0049 1.7E-07 55.6 6.2 93 11-145 304-425 (435)
43 3iev_A GTP-binding protein ERA 95.8 0.014 4.7E-07 50.2 5.8 50 154-205 100-151 (308)
44 3avx_A Elongation factor TS, e 95.7 0.012 4.3E-07 61.2 6.3 98 9-145 566-674 (1289)
45 3pqc_A Probable GTP-binding pr 95.7 0.024 8.3E-07 42.8 6.4 51 154-206 112-162 (195)
46 1svi_A GTP-binding protein YSX 95.3 0.042 1.4E-06 41.8 6.5 50 154-205 113-162 (195)
47 4dcu_A GTP-binding protein ENG 95.2 0.015 5.2E-07 52.5 4.4 38 154-193 285-322 (456)
48 1f60_A Elongation factor EEF1A 95.0 0.039 1.3E-06 50.3 6.4 93 11-145 315-437 (458)
49 2hjg_A GTP-binding protein ENG 94.8 0.035 1.2E-06 49.8 5.5 49 154-204 265-315 (436)
50 3mca_A HBS1, elongation factor 94.4 0.027 9.3E-07 53.4 3.9 92 11-145 476-589 (592)
51 3e1y_E Eukaryotic peptide chai 93.5 0.13 4.6E-06 42.2 6.1 77 10-124 75-173 (204)
52 1ega_A Protein (GTP-binding pr 93.3 0.2 6.8E-06 42.8 7.1 46 154-202 96-142 (301)
53 3t1o_A Gliding protein MGLA; G 93.1 0.12 4.2E-06 38.8 4.9 64 126-192 75-150 (198)
54 2fh5_B SR-beta, signal recogni 92.6 0.11 3.8E-06 40.4 4.2 77 124-204 53-142 (214)
55 1upt_A ARL1, ADP-ribosylation 92.6 0.57 2E-05 34.3 7.8 68 124-193 50-124 (171)
56 4bas_A ADP-ribosylation factor 92.4 0.35 1.2E-05 36.7 6.5 69 123-193 61-143 (199)
57 1r5b_A Eukaryotic peptide chai 92.3 0.097 3.3E-06 47.8 3.9 94 10-145 342-463 (467)
58 2qpt_A EH domain-containing pr 91.9 0.11 3.9E-06 48.7 4.0 49 154-203 196-244 (550)
59 2efe_B Small GTP-binding prote 91.9 0.074 2.5E-06 39.7 2.2 65 126-192 62-132 (181)
60 2cxx_A Probable GTP-binding pr 91.8 0.3 1E-05 36.6 5.6 31 162-193 108-138 (190)
61 1puj_A YLQF, conserved hypothe 91.8 0.11 3.8E-06 44.4 3.5 37 154-194 31-67 (282)
62 3qq5_A Small GTP-binding prote 91.6 0.25 8.7E-06 45.1 5.9 64 126-194 84-157 (423)
63 1wf3_A GTP-binding protein; GT 91.6 0.27 9.3E-06 42.2 5.8 68 123-194 53-134 (301)
64 2h17_A ADP-ribosylation factor 91.5 0.68 2.3E-05 35.0 7.3 67 124-192 64-137 (181)
65 1t9h_A YLOQ, probable GTPase E 91.4 1.2 4.3E-05 38.9 9.9 39 154-193 94-133 (307)
66 2hxs_A RAB-26, RAS-related pro 91.3 0.058 2E-06 40.2 1.1 65 126-192 57-130 (178)
67 1moz_A ARL1, ADP-ribosylation 91.2 0.53 1.8E-05 35.1 6.3 67 124-192 61-134 (183)
68 2dyk_A GTP-binding protein; GT 91.0 0.46 1.6E-05 34.5 5.7 66 124-192 48-123 (161)
69 1zj6_A ADP-ribosylation factor 91.0 0.66 2.2E-05 35.1 6.8 67 124-192 59-132 (187)
70 2rcn_A Probable GTPase ENGC; Y 90.7 1.9 6.4E-05 38.7 10.5 24 170-194 154-177 (358)
71 1ksh_A ARF-like protein 2; sma 90.7 0.54 1.8E-05 35.4 6.0 68 124-193 61-135 (186)
72 2h57_A ADP-ribosylation factor 90.7 0.55 1.9E-05 35.7 6.1 67 124-192 66-141 (190)
73 3reg_A RHO-like small GTPase; 90.6 0.41 1.4E-05 36.5 5.3 60 127-192 73-142 (194)
74 1nrj_B SR-beta, signal recogni 90.6 0.4 1.4E-05 37.3 5.3 70 124-194 54-137 (218)
75 3t5d_A Septin-7; GTP-binding p 90.5 0.26 8.9E-06 41.0 4.4 49 154-205 123-172 (274)
76 3llu_A RAS-related GTP-binding 90.4 0.96 3.3E-05 34.8 7.4 65 125-193 69-145 (196)
77 2x77_A ADP-ribosylation factor 90.4 0.93 3.2E-05 34.2 7.2 68 124-193 65-139 (189)
78 2fg5_A RAB-22B, RAS-related pr 90.4 0.12 4E-06 39.8 2.1 65 126-192 73-143 (192)
79 2gf9_A RAS-related protein RAB 89.9 0.19 6.4E-06 38.3 2.9 65 126-192 72-142 (189)
80 2j69_A Bacterial dynamin-like 89.3 0.27 9.4E-06 47.3 4.1 64 126-192 175-245 (695)
81 1z0j_A RAB-22, RAS-related pro 88.8 0.16 5.6E-06 37.1 1.7 65 126-192 56-126 (170)
82 2xtp_A GTPase IMAP family memb 88.7 1.1 3.8E-05 36.3 6.8 68 122-192 68-154 (260)
83 3def_A T7I23.11 protein; chlor 88.3 1.3 4.4E-05 36.5 7.0 69 123-192 82-166 (262)
84 3clv_A RAB5 protein, putative; 88.1 0.15 5E-06 38.2 1.0 61 125-189 93-159 (208)
85 1z0f_A RAB14, member RAS oncog 87.9 0.15 5E-06 37.7 0.9 64 126-192 65-135 (179)
86 2g6b_A RAS-related protein RAB 87.8 0.37 1.3E-05 35.8 3.1 65 126-192 61-131 (180)
87 2fu5_C RAS-related protein RAB 87.7 0.28 9.7E-06 36.7 2.5 65 126-192 58-128 (183)
88 1zd9_A ADP-ribosylation factor 87.7 0.61 2.1E-05 35.6 4.4 67 124-192 66-139 (188)
89 1f6b_A SAR1; gtpases, N-termin 87.6 0.83 2.8E-05 35.5 5.2 65 124-191 68-140 (198)
90 2il1_A RAB12; G-protein, GDP, 87.6 0.12 4.1E-06 39.8 0.3 65 126-192 76-146 (192)
91 2qu8_A Putative nucleolar GTP- 87.4 0.91 3.1E-05 36.0 5.4 39 154-193 116-158 (228)
92 2ged_A SR-beta, signal recogni 87.2 0.48 1.6E-05 35.9 3.5 76 124-203 90-182 (193)
93 4djt_A GTP-binding nuclear pro 87.0 0.41 1.4E-05 37.2 3.1 64 126-192 62-132 (218)
94 1z08_A RAS-related protein RAB 86.6 0.24 8.1E-06 36.4 1.4 65 126-192 56-126 (170)
95 1m2o_B GTP-binding protein SAR 86.5 0.99 3.4E-05 34.7 5.0 66 124-191 66-138 (190)
96 1g16_A RAS-related protein SEC 86.1 0.86 3E-05 33.2 4.3 64 126-191 53-122 (170)
97 1zbd_A Rabphilin-3A; G protein 85.9 0.37 1.3E-05 36.9 2.3 65 126-192 58-128 (203)
98 2ce2_X GTPase HRAS; signaling 85.8 0.51 1.8E-05 33.9 2.9 64 127-192 53-123 (166)
99 3r7w_A Gtpase1, GTP-binding pr 85.8 0.95 3.3E-05 38.5 5.0 66 124-195 51-133 (307)
100 3cph_A RAS-related protein SEC 85.5 0.99 3.4E-05 34.6 4.5 64 126-191 70-139 (213)
101 1h65_A Chloroplast outer envel 85.5 1.3 4.3E-05 36.6 5.5 70 123-193 85-170 (270)
102 3k53_A Ferrous iron transport 85.4 0.26 8.9E-06 40.8 1.3 66 123-192 48-124 (271)
103 2aka_B Dynamin-1; fusion prote 85.0 0.63 2.2E-05 38.2 3.4 37 154-193 170-208 (299)
104 1vg8_A RAS-related protein RAB 84.6 1.4 4.6E-05 33.6 4.9 64 126-192 58-132 (207)
105 1jwy_B Dynamin A GTPase domain 84.6 0.87 3E-05 37.8 4.1 81 106-193 116-214 (315)
106 3i8s_A Ferrous iron transport 84.6 0.29 1E-05 41.1 1.2 64 124-192 49-127 (274)
107 3bc1_A RAS-related protein RAB 84.5 0.46 1.6E-05 35.4 2.2 65 126-192 71-142 (195)
108 1pui_A ENGB, probable GTP-bind 84.5 2.1 7.3E-05 32.8 6.0 56 148-205 108-165 (210)
109 3tw8_B RAS-related protein RAB 84.3 3.2 0.00011 30.4 6.7 61 126-192 59-128 (181)
110 1mh1_A RAC1; GTP-binding, GTPa 84.2 1 3.6E-05 33.3 4.0 64 127-193 55-125 (186)
111 2fv8_A H6, RHO-related GTP-bin 84.2 0.97 3.3E-05 35.1 4.0 62 126-193 74-145 (207)
112 3con_A GTPase NRAS; structural 84.1 1.2 4E-05 33.6 4.3 14 178-191 127-140 (190)
113 2a5j_A RAS-related protein RAB 83.9 0.37 1.3E-05 36.8 1.4 65 126-192 71-141 (191)
114 2b6h_A ADP-ribosylation factor 83.8 1.3 4.6E-05 34.0 4.6 66 124-193 72-146 (192)
115 2gco_A H9, RHO-related GTP-bin 83.8 1 3.6E-05 34.7 4.0 62 126-193 74-145 (201)
116 3gee_A MNME, tRNA modification 83.7 2.2 7.5E-05 39.4 6.8 42 154-195 320-361 (476)
117 3tkl_A RAS-related protein RAB 83.6 0.71 2.4E-05 34.8 2.9 66 126-193 66-137 (196)
118 2yv5_A YJEQ protein; hydrolase 83.5 4.1 0.00014 34.7 8.0 39 154-193 87-126 (302)
119 3izq_1 HBS1P, elongation facto 83.3 1.1 3.7E-05 42.7 4.6 59 11-107 483-542 (611)
120 1r2q_A RAS-related protein RAB 83.1 0.35 1.2E-05 35.2 1.0 65 126-192 56-126 (170)
121 3p26_A Elongation factor 1 alp 82.9 1.3 4.3E-05 40.3 4.8 59 11-107 349-408 (483)
122 2bcg_Y Protein YP2, GTP-bindin 82.7 0.94 3.2E-05 34.8 3.3 65 126-192 58-128 (206)
123 2qag_A Septin-2, protein NEDD5 82.4 1.6 5.5E-05 38.3 5.1 29 178-206 175-203 (361)
124 3cnl_A YLQF, putative uncharac 82.0 0.32 1.1E-05 41.2 0.4 19 177-195 46-64 (262)
125 2erx_A GTP-binding protein DI- 81.6 0.45 1.5E-05 34.7 1.0 65 126-192 52-124 (172)
126 3cpj_B GTP-binding protein YPT 81.3 0.44 1.5E-05 37.6 1.0 65 126-192 63-133 (223)
127 2atx_A Small GTP binding prote 81.3 1.9 6.6E-05 32.6 4.6 66 126-193 67-138 (194)
128 4gzl_A RAS-related C3 botulinu 81.2 1.7 5.7E-05 33.8 4.3 62 127-194 80-151 (204)
129 1mky_A Probable GTP-binding pr 81.0 2.7 9.3E-05 37.5 6.2 38 154-193 271-308 (439)
130 2y8e_A RAB-protein 6, GH09086P 81.0 0.57 1.9E-05 34.5 1.4 65 126-192 64-134 (179)
131 3o47_A ADP-ribosylation factor 80.9 3.6 0.00012 35.4 6.7 70 123-194 207-283 (329)
132 1fzq_A ADP-ribosylation factor 80.9 1.5 5.3E-05 33.3 3.9 68 124-193 59-133 (181)
133 2yc2_C IFT27, small RAB-relate 80.9 1.5 5.3E-05 33.1 3.9 64 126-191 74-146 (208)
134 2hup_A RAS-related protein RAB 80.4 0.41 1.4E-05 37.3 0.5 65 126-192 79-149 (201)
135 2gf0_A GTP-binding protein DI- 80.3 0.92 3.2E-05 34.2 2.5 65 126-192 57-129 (199)
136 1ky3_A GTP-binding protein YPT 80.1 1.8 6.1E-05 31.8 3.9 65 126-192 59-133 (182)
137 2bme_A RAB4A, RAS-related prot 79.6 0.62 2.1E-05 34.8 1.3 64 126-192 60-130 (186)
138 2oil_A CATX-8, RAS-related pro 79.6 0.67 2.3E-05 35.2 1.5 65 126-192 75-145 (193)
139 1wms_A RAB-9, RAB9, RAS-relate 78.9 2.8 9.4E-05 30.8 4.6 14 178-191 117-130 (177)
140 4dcu_A GTP-binding protein ENG 78.8 1 3.5E-05 40.5 2.6 37 154-192 110-146 (456)
141 1x3s_A RAS-related protein RAB 78.7 2 6.8E-05 32.1 3.9 63 126-191 65-135 (195)
142 2q3h_A RAS homolog gene family 78.1 6.4 0.00022 29.8 6.7 61 126-192 69-139 (201)
143 2j1l_A RHO-related GTP-binding 77.9 5.8 0.0002 30.9 6.5 62 126-193 83-154 (214)
144 2j0v_A RAC-like GTP-binding pr 77.7 1.7 5.9E-05 33.4 3.4 62 126-193 58-129 (212)
145 3iby_A Ferrous iron transport 76.7 1.1 3.6E-05 37.5 2.0 61 124-192 47-125 (256)
146 3l0i_B RAS-related protein RAB 76.5 1.7 6E-05 33.3 3.0 61 126-192 83-153 (199)
147 2hjg_A GTP-binding protein ENG 76.2 1.9 6.4E-05 38.5 3.6 37 154-192 90-126 (436)
148 3gj0_A GTP-binding nuclear pro 76.0 2.8 9.7E-05 32.6 4.2 64 126-192 65-134 (221)
149 1ek0_A Protein (GTP-binding pr 76.0 1.5 5E-05 31.8 2.4 65 126-192 53-123 (170)
150 3lxx_A GTPase IMAP family memb 75.4 2.7 9.3E-05 33.6 4.0 38 154-193 120-161 (239)
151 3sop_A Neuronal-specific septi 74.1 3.2 0.00011 35.1 4.3 50 154-206 119-169 (270)
152 4dsu_A GTPase KRAS, isoform 2B 74.1 2.3 8E-05 31.5 3.1 65 127-193 54-125 (189)
153 3p32_A Probable GTPase RV1496/ 73.4 2.1 7E-05 37.3 3.0 26 179-204 219-244 (355)
154 2ew1_A RAS-related protein RAB 72.8 1.8 6.2E-05 34.0 2.3 65 126-192 76-146 (201)
155 1u8z_A RAS-related protein RAL 72.4 1.5 5E-05 31.6 1.6 65 126-192 53-124 (168)
156 2o52_A RAS-related protein RAB 71.7 0.88 3E-05 35.2 0.2 64 126-192 75-145 (200)
157 1m7b_A RND3/RHOE small GTP-bin 71.7 23 0.00079 26.4 8.3 60 126-191 56-125 (184)
158 3kkq_A RAS-related protein M-R 71.4 2.3 7.9E-05 31.6 2.5 60 132-192 72-138 (183)
159 3t34_A Dynamin-related protein 71.2 4.5 0.00015 34.9 4.6 80 106-193 121-219 (360)
160 2a9k_A RAS-related protein RAL 71.0 1.6 5.5E-05 32.2 1.5 65 126-192 67-138 (187)
161 3bwd_D RAC-like GTP-binding pr 70.8 2.7 9.1E-05 31.1 2.7 61 127-193 58-128 (182)
162 3geh_A MNME, tRNA modification 70.1 4.1 0.00014 37.4 4.3 36 154-193 311-346 (462)
163 1r8s_A ADP-ribosylation factor 70.0 3.4 0.00012 29.9 3.2 64 124-193 43-117 (164)
164 3a1s_A Iron(II) transport prot 68.8 2.3 7.9E-05 35.3 2.2 64 124-192 51-125 (258)
165 1c1y_A RAS-related protein RAP 68.6 1.1 3.9E-05 32.4 0.2 65 126-192 52-123 (167)
166 1xzp_A Probable tRNA modificat 67.9 4.2 0.00014 37.6 3.9 35 154-192 331-365 (482)
167 1kao_A RAP2A; GTP-binding prot 67.6 2.4 8.1E-05 30.5 1.8 65 126-192 52-123 (167)
168 1mky_A Probable GTP-binding pr 67.4 8.2 0.00028 34.4 5.6 36 154-191 89-124 (439)
169 1yrb_A ATP(GTP)binding protein 66.9 6.5 0.00022 31.3 4.5 21 173-194 168-188 (262)
170 1z2a_A RAS-related protein RAB 66.6 2.3 7.9E-05 30.8 1.6 65 126-192 55-124 (168)
171 3zvr_A Dynamin-1; hydrolase, D 65.9 7.4 0.00025 38.6 5.5 37 154-193 195-233 (772)
172 2wkq_A NPH1-1, RAS-related C3 65.9 5.4 0.00018 32.7 3.8 58 129-192 207-274 (332)
173 3t5g_A GTP-binding protein RHE 65.6 1.8 6E-05 32.2 0.8 61 126-192 55-126 (181)
174 2x2e_A Dynamin-1; nitration, h 65.3 5.3 0.00018 34.5 3.9 37 154-193 175-213 (353)
175 3q3j_B RHO-related GTP-binding 64.7 19 0.00065 28.1 6.7 60 126-191 76-145 (214)
176 1gwn_A RHO-related GTP-binding 64.4 36 0.0012 26.4 8.3 60 126-191 77-146 (205)
177 2p5s_A RAS and EF-hand domain 64.3 2.6 8.8E-05 32.3 1.5 63 126-191 78-147 (199)
178 3ec1_A YQEH GTPase; atnos1, at 63.1 4.9 0.00017 35.4 3.3 21 172-192 93-113 (369)
179 2p67_A LAO/AO transport system 63.1 5.5 0.00019 34.4 3.6 73 122-203 146-220 (341)
180 2qag_C Septin-7; cell cycle, c 62.5 6.8 0.00023 35.6 4.2 29 178-206 168-196 (418)
181 2bov_A RAla, RAS-related prote 61.8 5.2 0.00018 30.2 2.8 65 126-192 63-134 (206)
182 3q72_A GTP-binding protein RAD 61.0 3.5 0.00012 29.9 1.7 14 179-192 108-121 (166)
183 3ihw_A Centg3; RAS, centaurin, 60.7 1.8 6.1E-05 33.1 0.0 12 179-190 121-132 (184)
184 2qag_B Septin-6, protein NEDD5 59.7 6.6 0.00023 36.1 3.6 39 167-205 165-204 (427)
185 2f7s_A C25KG, RAS-related prot 58.9 2.4 8.2E-05 32.7 0.5 61 126-192 85-156 (217)
186 2nzj_A GTP-binding protein REM 58.9 4.9 0.00017 29.3 2.1 14 179-192 113-126 (175)
187 3dpu_A RAB family protein; roc 58.6 7.5 0.00026 35.5 3.8 65 124-193 97-166 (535)
188 2iwr_A Centaurin gamma 1; ANK 58.2 9.4 0.00032 28.1 3.7 12 179-190 110-121 (178)
189 1u0l_A Probable GTPase ENGC; p 57.8 7.2 0.00025 33.1 3.3 23 171-194 110-132 (301)
190 3q85_A GTP-binding protein REM 57.7 5.5 0.00019 28.9 2.2 15 178-192 110-124 (169)
191 2wsm_A Hydrogenase expression/ 57.1 3.8 0.00013 31.8 1.3 33 154-192 137-169 (221)
192 3lvq_E ARF-GAP with SH3 domain 56.9 24 0.00082 31.5 6.7 68 123-192 364-438 (497)
193 2fn4_A P23, RAS-related protei 56.6 2.6 8.8E-05 30.9 0.3 61 126-192 58-129 (181)
194 2qnr_A Septin-2, protein NEDD5 56.2 9.5 0.00032 32.4 3.8 41 162-205 142-183 (301)
195 3h2y_A GTPase family protein; 56.0 9.3 0.00032 33.6 3.8 36 154-193 77-112 (368)
196 1z06_A RAS-related protein RAB 56.0 3.2 0.00011 31.3 0.7 65 126-192 70-142 (189)
197 2zej_A Dardarin, leucine-rich 55.7 26 0.00089 26.2 5.9 17 178-194 113-129 (184)
198 2e87_A Hypothetical protein PH 55.4 19 0.00065 31.0 5.6 26 170-195 273-298 (357)
199 1lnz_A SPO0B-associated GTP-bi 55.3 8.8 0.0003 33.7 3.5 16 178-193 275-290 (342)
200 3dz8_A RAS-related protein RAB 54.5 2.9 9.8E-05 31.7 0.2 66 125-192 72-143 (191)
201 3oes_A GTPase rhebl1; small GT 50.5 5.3 0.00018 30.5 1.2 14 179-192 131-144 (201)
202 2www_A Methylmalonic aciduria 50.4 9.4 0.00032 33.2 2.9 20 174-194 210-229 (349)
203 3j2k_7 ERF3, eukaryotic polype 49.8 31 0.0011 30.9 6.3 30 12-41 315-344 (439)
204 2atv_A RERG, RAS-like estrogen 47.8 3.5 0.00012 31.4 -0.3 14 179-192 134-147 (196)
205 2qtf_A Protein HFLX, GTP-bindi 46.7 15 0.00052 32.3 3.7 25 169-193 282-308 (364)
206 3c5c_A RAS-like protein 12; GD 46.4 15 0.00052 27.7 3.2 15 178-192 128-142 (187)
207 3cbq_A GTP-binding protein REM 46.0 7.2 0.00025 30.1 1.3 15 178-192 131-145 (195)
208 3c5h_A Glucocorticoid receptor 45.8 14 0.00048 30.1 3.1 17 178-194 199-215 (255)
209 2wjg_A FEOB, ferrous iron tran 44.3 4.1 0.00014 30.3 -0.3 64 124-192 53-127 (188)
210 2l27_B Peptide agonist; CRF, E 43.8 4 0.00014 26.3 -0.4 16 27-44 1-16 (38)
211 3r7w_B Gtpase2, GTP-binding pr 43.8 14 0.00049 32.8 3.1 65 126-194 47-123 (331)
212 3th5_A RAS-related C3 botulinu 49.8 4.9 0.00017 30.7 0.0 15 178-192 135-149 (204)
213 2hf9_A Probable hydrogenase ni 41.1 9.6 0.00033 29.5 1.3 17 175-192 163-179 (226)
214 3p3g_A UDP-3-O-[3-hydroxymyris 37.5 38 0.0013 30.2 4.8 49 132-186 49-98 (300)
215 2rmf_A Urocortin, HUCN1; CRF l 34.4 5 0.00017 26.1 -1.1 16 27-44 3-18 (40)
216 2wji_A Ferrous iron transport 33.5 4 0.00014 30.3 -1.9 16 175-191 107-122 (165)
217 2gj8_A MNME, tRNA modification 33.1 9.8 0.00034 28.6 0.2 36 154-191 91-129 (172)
218 2g3y_A GTP-binding protein GEM 32.8 17 0.00057 29.1 1.6 13 179-191 147-159 (211)
219 3lxw_A GTPase IMAP family memb 29.9 28 0.00096 28.3 2.5 37 154-192 113-154 (247)
220 4dkx_A RAS-related protein RAB 27.1 53 0.0018 26.3 3.7 14 179-192 120-133 (216)
221 3rob_A Uncharacterized conserv 25.0 80 0.0027 23.7 4.1 20 121-140 110-130 (139)
222 3uhm_A UDP-3-O-[3-hydroxymyris 24.6 75 0.0026 28.2 4.4 48 132-186 49-97 (299)
223 3b1v_A Ferrous iron uptake tra 24.4 7.9 0.00027 32.6 -1.9 63 124-191 48-121 (272)
224 2qm8_A GTPase/ATPase; G protei 22.6 76 0.0026 27.3 4.0 12 181-192 197-208 (337)
225 2cjw_A GTP-binding protein GEM 22.5 32 0.0011 26.2 1.4 13 179-191 116-128 (192)
226 1udx_A The GTP-binding protein 22.1 62 0.0021 29.2 3.4 18 174-192 267-284 (416)
227 1wxq_A GTP-binding protein; st 20.0 79 0.0027 28.1 3.6 16 178-193 215-230 (397)
No 1
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.73 E-value=2.1e-18 Score=154.43 Aligned_cols=114 Identities=32% Similarity=0.587 Sum_probs=105.2
Q ss_pred CCccCCccccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCccccee
Q psy13818 2 GTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKV 81 (207)
Q Consensus 2 gt~~dp~l~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv 81 (207)
++++||.++|.|-+.|+|++.|+++|+++.+++.++++|.+.. |.+ ++.+.
T Consensus 286 ~l~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~------------------------~~~-----~~~~~ 336 (403)
T 3sjy_A 286 GTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVV------------------------GAK-----EMLKV 336 (403)
T ss_dssp EESSCHHHHGGGTTTTCEEEETTCCCCEEEEEEEEEEECSBCT------------------------TCS-----SCCBC
T ss_pred EeccccccchhhhccccEEeCCCCCCcceeEEEEEEEEEeccc------------------------ccc-----ccccC
Confidence 3568999999999999999999999999999999999998887 442 24568
Q ss_pred ccCccCceEEEEeeccccceEEEEEecceEEEEeeCcccccCCc-EEEEEEeecCcceeec-ccc
Q psy13818 82 QKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNE-KIALSRRVEKHWSLIE-GTV 144 (207)
Q Consensus 82 ~~l~~~E~lmlniGs~~t~g~V~~~~~Dla~i~L~~Pvc~~~G~-kiaIsR~V~gh~rlig-g~~ 144 (207)
+||+.|+.+++.+||..+.|+|..+++|.+++.|..|+|++.|+ |++|||++.+|||+|| |.|
T Consensus 337 ~~l~~~~~~~~~~gt~~~~~~v~~~~~~~~~~~l~~p~~~~~g~~r~~i~r~~~~~~r~~g~g~i 401 (403)
T 3sjy_A 337 DPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVAVWSNNIRTVISRQIAGRWRMIGWGLV 401 (403)
T ss_dssp CCCCTTCEEEEEETTEEEEEEEEEECSSEEEEEEEEEEECCSSSCEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCCCCEEEEEECccEEEEEEEEecCceEEEEeCCcEeeccCCEEEEEEEEeCCcEEEEEEEEE
Confidence 89999999999999999999999999999999999999999999 9999999999999999 544
No 2
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.64 E-value=1.7e-16 Score=142.29 Aligned_cols=115 Identities=40% Similarity=0.768 Sum_probs=105.7
Q ss_pred CCccCCccccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCccccee
Q psy13818 2 GTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKV 81 (207)
Q Consensus 2 gt~~dp~l~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv 81 (207)
.+++||.++|.|...|+|++.++.+|+++.+++.++++|++.. |. +++.|.
T Consensus 292 ~~~~~~~~~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~------------------------g~-----~~~~~~ 342 (408)
T 1s0u_A 292 GTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVV------------------------GT-----KEELKI 342 (408)
T ss_dssp ECSSCGGGTGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCS------------------------SC-----SSTTCC
T ss_pred EeccCcccchhhccceeEEECCCCCCceeEEEEEEEEEEeccc------------------------cc-----cccccc
Confidence 3568999999999999999999999999999999999998877 55 335678
Q ss_pred ccCccCceEEEEeeccccceEEEEEecceEEEEeeCcccccCCcEEEEEEeecCcceeec-cccc
Q psy13818 82 QKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTVT 145 (207)
Q Consensus 82 ~~l~~~E~lmlniGs~~t~g~V~~~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~~ 145 (207)
.+|+.|+.+++.+||+.+.|+|..++.|.+++.|..|+|++.|+|+.++++++++||+|| |.|.
T Consensus 343 ~~l~~g~~~~~~~~t~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~r~ig~G~i~ 407 (408)
T 1s0u_A 343 EPLRTGEVLMLNIGTATTAGVITSARGDIADIKLKLPICAEIGDRVAISRRVGSRWRLIGYGTIE 407 (408)
T ss_dssp CCCCTTCEEEEEETTEEEEEEEEEEETTEEEEEEEEEEECCTTCEEEEEEECSSSEEEEEEEEEC
T ss_pred cCCCCCCEEEEEEcCCEEEEEEEEecCCEEEEEECCcEEecCCCEEEEEEecCCCeEEEEEEEEc
Confidence 999999999999999999999999999999999999999999999999999999999999 6653
No 3
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.62 E-value=3.5e-16 Score=140.04 Aligned_cols=114 Identities=37% Similarity=0.703 Sum_probs=104.0
Q ss_pred CccCCccccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceec
Q psy13818 3 TKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQ 82 (207)
Q Consensus 3 t~~dp~l~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~ 82 (207)
+++||.++|.|-+.|+|++.|+.+|+++.+++.++++|++.. |. +++.+..
T Consensus 295 ~~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~------------------------g~-----~~~~~~~ 345 (410)
T 1kk1_A 295 TKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVV------------------------GT-----EQELKVE 345 (410)
T ss_dssp ESSCGGGTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC-------------------------------CCCCSCC
T ss_pred EecCcccchhhccceeEEecCCCCCceeEEEEEEEEEEeccc------------------------cc-----ccccccc
Confidence 478999999999999999999999999999999999998776 44 3355789
Q ss_pred cCccCceEEEEeeccccceEEEEEecceEEEEeeCcccccCCcEEEEEEeecCcceeec-cccc
Q psy13818 83 KLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTVT 145 (207)
Q Consensus 83 ~l~~~E~lmlniGs~~t~g~V~~~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~~ 145 (207)
+|+.|+.+++.+||+.+.|+|..++.|.+.+.|..|+|++.|+|+.++++++++||+|| |.|.
T Consensus 346 ~l~~g~~~~~~~~t~~~~~~v~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~r~ig~G~i~ 409 (410)
T 1kk1_A 346 PIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVCAEPGDRVAISRQIGSRWRLIGYGIIK 409 (410)
T ss_dssp CCCTTCEEEEEETTEEEEEEEEEEETTEEEEEEEEEEECCTTCEEEEEEEETTEEEEEEEEEEE
T ss_pred cCCCCCEEEEEEcCCEEeEEEEEecCCEEEEEeCCcEEecCCCEEEEEEecCCCcEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999 6653
No 4
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.51 E-value=1.3e-14 Score=129.86 Aligned_cols=88 Identities=40% Similarity=0.633 Sum_probs=74.9
Q ss_pred EeeCcccccCC------cEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCe
Q psy13818 114 SLTNPVCTEVN------EKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKH 179 (207)
Q Consensus 114 ~L~~Pvc~~~G------~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~ 179 (207)
|.+.++|.++| .++.|. +.|||.+|+ +||+.|+. |||++|+++|||+||+.+++.+|+++
T Consensus 66 y~~~~~~~~~g~~~~~~~~i~ii-DtPGh~~f~-----~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~ 139 (410)
T 1kk1_A 66 YSTSPVCPYCGHETEFVRRVSFI-DAPGHEALM-----TTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKN 139 (410)
T ss_dssp EESSSBCTTTCCBCEEEEEEEEE-ECSSHHHHH-----HHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCC
T ss_pred ccccccccccCcccccccEEEEE-ECCChHHHH-----HHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCc
Confidence 55666665545 456776 999999999 89988875 99999977999999999999999999
Q ss_pred EEEEEecCCCCChhhHHHHHHHHHhhhC
Q psy13818 180 IIILQNKIDLVKEGQANEQHEQIVKFVQ 207 (207)
Q Consensus 180 iIV~vNK~DlV~~~~~~~~~~eI~~~l~ 207 (207)
+|||+||||++++++.++.+++++++++
T Consensus 140 iivviNK~Dl~~~~~~~~~~~~i~~~l~ 167 (410)
T 1kk1_A 140 IIIAQNKIELVDKEKALENYRQIKEFIE 167 (410)
T ss_dssp EEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred EEEEEECccCCCHHHHHHHHHHHHHHHH
Confidence 9999999999998877788889988763
No 5
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.47 E-value=3.2e-14 Score=127.47 Aligned_cols=88 Identities=45% Similarity=0.690 Sum_probs=73.0
Q ss_pred EeeCcccccCC------cEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCe
Q psy13818 114 SLTNPVCTEVN------EKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKH 179 (207)
Q Consensus 114 ~L~~Pvc~~~G------~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~ 179 (207)
|.....|.++| .++.|. +.|||.+|+ +||+.|+. +||++|+++|||+||+.+++.+|+++
T Consensus 64 y~~~~~~~~~g~~~~~~~~i~ii-DtPGh~~f~-----~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~ 137 (408)
T 1s0u_A 64 YTTKPRCPNCLAETEFLRRVSFV-DSPGHETLM-----ATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDK 137 (408)
T ss_dssp EESSSBCTTSCCBCEEEEEEEEE-ECSSHHHHH-----HHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCC
T ss_pred ccccccccccCcccccccEEEEE-ECCCHHHHH-----HHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCe
Confidence 55555555444 356666 999999999 99998875 89999977999999999999999999
Q ss_pred EEEEEecCCCCChhhHHHHHHHHHhhhC
Q psy13818 180 IIILQNKIDLVKEGQANEQHEQIVKFVQ 207 (207)
Q Consensus 180 iIV~vNK~DlV~~~~~~~~~~eI~~~l~ 207 (207)
+|||+||+|++++++.++.+++++++++
T Consensus 138 iivv~NK~Dl~~~~~~~~~~~~i~~~l~ 165 (408)
T 1s0u_A 138 IIIVQNKIDLVDEKQAEENYEQIKEFVK 165 (408)
T ss_dssp EEEEEECTTSSCTTTTTTHHHHHHHHHT
T ss_pred EEEEEEccCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999998766677888887753
No 6
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.28 E-value=3.9e-12 Score=113.79 Aligned_cols=76 Identities=38% Similarity=0.564 Sum_probs=68.3
Q ss_pred cEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHH
Q psy13818 125 EKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQAN 196 (207)
Q Consensus 125 ~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~ 196 (207)
.++.|. +.|||.+|+ +||++++. +||+++.+++||+||+.+++.+|++++|+|+||+|++++++.+
T Consensus 75 ~~~~ii-DtPGh~~~~-----~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 148 (403)
T 3sjy_A 75 RRISFI-DAPGHEVLM-----ATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEAL 148 (403)
T ss_dssp EEEEEE-ECCCCGGGH-----HHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHH
T ss_pred ceEEEE-ECCCcHHHH-----HHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHH
Confidence 466666 999999999 89887765 8999997799999999999999999999999999999998888
Q ss_pred HHHHHHHhhh
Q psy13818 197 EQHEQIVKFV 206 (207)
Q Consensus 197 ~~~~eI~~~l 206 (207)
+.++++++++
T Consensus 149 ~~~~~i~~~l 158 (403)
T 3sjy_A 149 SQYRQIKQFT 158 (403)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888875
No 7
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.28 E-value=4.9e-12 Score=115.22 Aligned_cols=83 Identities=19% Similarity=0.264 Sum_probs=65.7
Q ss_pred ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCC-------CchHHHHHHHH
Q psy13818 109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQ-------PQTSEHLAAIE 173 (207)
Q Consensus 109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~-------pQT~EHl~il~ 173 (207)
|.++.++..+ +.++.|. +.|||.+|+ +||++|+. |||++|. + |||+||+.++.
T Consensus 84 d~~~~~~~~~-----~~~~~ii-DTPGh~~f~-----~~~~~~~~~aD~~ilVVDa~~g~-~e~~~~~~~qt~e~l~~~~ 151 (439)
T 3j2k_7 84 EVGRAYFETE-----KKHFTIL-DAPGHKSFV-----PNMIGGASQADLAVLVISARKGE-FETGFEKGGQTREHAMLAK 151 (439)
T ss_pred EEeEEEEecC-----CeEEEEE-ECCChHHHH-----HHHHhhHhhCCEEEEEEECCCCc-cccccCCCchHHHHHHHHH
Confidence 4555555543 5577776 999999999 99998865 9999986 5 89999999999
Q ss_pred HcCCCeEEEEEecCCCCChhhHHHHHHHHH
Q psy13818 174 IMKLKHIIILQNKIDLVKEGQANEQHEQIV 203 (207)
Q Consensus 174 ~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~ 203 (207)
.+|++++|||+||||+++.++.+++++++.
T Consensus 152 ~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~ 181 (439)
T 3j2k_7 152 TAGVKHLIVLINKMDDPTVNWSNERYEECK 181 (439)
T ss_pred HcCCCeEEEEeecCCCcccchHHHHHHHHH
Confidence 999999999999999976544344444433
No 8
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.21 E-value=2.7e-12 Score=118.60 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=65.2
Q ss_pred CcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhH
Q psy13818 124 NEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQA 195 (207)
Q Consensus 124 G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~ 195 (207)
+.++.|. +.|||.+|+ +||+.++. |||++|. +|||+||+.+++.+|+++ |||+||||+++.++.
T Consensus 72 ~~~i~ii-DtPGh~~~~-----~~~~~~~~~aD~~ilVvda~~g~-~~qt~e~l~~~~~~~ip~-IvviNK~Dl~~~~~~ 143 (482)
T 1wb1_A 72 NYRITLV-DAPGHADLI-----RAVVSAADIIDLALIVVDAKEGP-KTQTGEHMLILDHFNIPI-IVVITKSDNAGTEEI 143 (482)
T ss_dssp TEEEEEC-CCSSHHHHH-----HHHHHHTTSCCEEEEEEETTTCS-CHHHHHHHHHHHHTTCCB-CEEEECTTSSCHHHH
T ss_pred CEEEEEE-ECCChHHHH-----HHHHHHHhhCCEEEEEEecCCCc-cHHHHHHHHHHHHcCCCE-EEEEECCCcccchhH
Confidence 5577776 999999999 88887755 8999996 999999999999999999 999999999987777
Q ss_pred HHHHHHHHhhh
Q psy13818 196 NEQHEQIVKFV 206 (207)
Q Consensus 196 ~~~~~eI~~~l 206 (207)
++..+++++++
T Consensus 144 ~~~~~~l~~~l 154 (482)
T 1wb1_A 144 KRTEMIMKSIL 154 (482)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777764
No 9
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.18 E-value=4.3e-11 Score=107.35 Aligned_cols=88 Identities=11% Similarity=0.162 Sum_probs=71.8
Q ss_pred EecceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCC
Q psy13818 106 TKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKL 177 (207)
Q Consensus 106 ~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI 177 (207)
++-|.++.++.. .+.++.|. +.|||.+|+ +||+.|+. || ++|. +|||+||+.+++.+|+
T Consensus 46 iTi~~~~~~~~~-----~~~~i~ii-DtPGh~~f~-----~~~~~~~~~aD~ailVvd-~~g~-~~qt~e~~~~~~~~~i 112 (370)
T 2elf_A 46 TSSDITMYNNDK-----EGRNMVFV-DAHSYPKTL-----KSLITALNISDIAVLCIP-PQGL-DAHTGECIIALDLLGF 112 (370)
T ss_dssp EESSSEEEEECS-----SSSEEEEE-ECTTTTTCH-----HHHHHHHHTCSEEEEEEC-TTCC-CHHHHHHHHHHHHTTC
T ss_pred EEEEeeEEEEec-----CCeEEEEE-ECCChHHHH-----HHHHHHHHHCCEEEEEEc-CCCC-cHHHHHHHHHHHHcCC
Confidence 344666666554 36678887 999999999 88887755 88 8886 9999999999999999
Q ss_pred CeEEEEEe-cCCCCChhhHHHHHHHHHhhhC
Q psy13818 178 KHIIILQN-KIDLVKEGQANEQHEQIVKFVQ 207 (207)
Q Consensus 178 ~~iIV~vN-K~DlV~~~~~~~~~~eI~~~l~ 207 (207)
+++||++| |||+ +.++.++..++++++++
T Consensus 113 ~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~ 142 (370)
T 2elf_A 113 KHGIIALTRSDST-HMHAIDELKAKLKVITS 142 (370)
T ss_dssp CEEEEEECCGGGS-CHHHHHHHHHHHHHHTT
T ss_pred CeEEEEEEeccCC-CHHHHHHHHHHHHHHHH
Confidence 99999999 9999 77766667788887763
No 10
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.17 E-value=3.5e-11 Score=107.58 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=63.2
Q ss_pred CCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCC-hh
Q psy13818 123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVK-EG 193 (207)
Q Consensus 123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~-~~ 193 (207)
.+.++.|. +.|||.+|+ +||.+|+. |||++|. ++||+||+.+++.+|++++||++||||+++ .+
T Consensus 64 ~~~~~~ii-DtpG~~~f~-----~~~~~~~~~aD~~ilVvda~~g~-~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 136 (397)
T 1d2e_A 64 AARHYAHT-DCPGHADYV-----KNMITGTAPLDGCILVVAANDGP-MPQTREHLLLARQIGVEHVVVYVNKADAVQDSE 136 (397)
T ss_dssp SSCEEEEE-ECSSHHHHH-----HHHHHTSSCCSEEEEEEETTTCS-CHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHH
T ss_pred CCeEEEEE-ECCChHHHH-----HHHHhhHhhCCEEEEEEECCCCC-CHHHHHHHHHHHHcCCCeEEEEEECcccCCCHH
Confidence 35678877 999999999 89977755 8999996 999999999999999999999999999995 33
Q ss_pred hHHHHHHHHHhhh
Q psy13818 194 QANEQHEQIVKFV 206 (207)
Q Consensus 194 ~~~~~~~eI~~~l 206 (207)
..+...+++++++
T Consensus 137 ~~~~~~~~~~~~l 149 (397)
T 1d2e_A 137 MVELVELEIRELL 149 (397)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344455666654
No 11
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.14 E-value=3.3e-11 Score=110.58 Aligned_cols=77 Identities=17% Similarity=0.256 Sum_probs=51.2
Q ss_pred CcEEEEEEeecCcceeecccccccccccee--------eecCCCC------CCCchHHHHHHHHHcCCCeEEEEEecCCC
Q psy13818 124 NEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESC------PQPQTSEHLAAIEIMKLKHIIILQNKIDL 189 (207)
Q Consensus 124 G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~------~~pQT~EHl~il~~lGI~~iIV~vNK~Dl 189 (207)
+.++.|. +.|||.+|+ +||+.|+. |||++|. .+|||+||+.++..+|++++|||+||||+
T Consensus 120 ~~~~~ii-DtPGh~~f~-----~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 120 HRRFSLL-DAPGHKGYV-----TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDE 193 (467)
T ss_dssp SEEEEEC-CCCC----------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTS
T ss_pred CeEEEEE-ECCCcHHHH-----HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccC
Confidence 5577776 999999999 99988865 8999985 13899999999999999999999999999
Q ss_pred CC--h--hhHHHHHHHHHhhh
Q psy13818 190 VK--E--GQANEQHEQIVKFV 206 (207)
Q Consensus 190 V~--~--~~~~~~~~eI~~~l 206 (207)
.+ + ++.++..+++++++
T Consensus 194 ~~~~~~~~~~~~i~~e~~~~l 214 (467)
T 1r5b_A 194 PSVQWSEERYKECVDKLSMFL 214 (467)
T ss_dssp TTCSSCHHHHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHHH
Confidence 54 2 33344455565554
No 12
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.11 E-value=1.1e-10 Score=105.54 Aligned_cols=86 Identities=20% Similarity=0.244 Sum_probs=66.8
Q ss_pred ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeE
Q psy13818 109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHI 180 (207)
Q Consensus 109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~i 180 (207)
|.++.++..+ +.++.|. +.|||.+|. +||+.++. +||++|. ++||+||+.+++.+|++++
T Consensus 93 ~~~~~~~~~~-----~~~~~ii-DtpGh~~f~-----~~~~~~~~~aD~~ilVvDa~~g~-~~qt~~~l~~~~~~~~~~i 160 (434)
T 1zun_B 93 DVAYRYFSTA-----KRKFIIA-DTPGHEQYT-----RNMATGASTCDLAIILVDARYGV-QTQTRRHSYIASLLGIKHI 160 (434)
T ss_dssp CCEEEEEECS-----SEEEEEE-ECCCSGGGH-----HHHHHHHTTCSEEEEEEETTTCS-CHHHHHHHHHHHHTTCCEE
T ss_pred EeeeeEeecC-----CceEEEE-ECCChHHHH-----HHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeE
Confidence 4455555443 5577776 999999999 88876654 8999997 9999999999999999999
Q ss_pred EEEEecCCCCCh--hhHHHHHHHHHhhh
Q psy13818 181 IILQNKIDLVKE--GQANEQHEQIVKFV 206 (207)
Q Consensus 181 IV~vNK~DlV~~--~~~~~~~~eI~~~l 206 (207)
|||+||+|++++ +..++..+++++++
T Consensus 161 IvviNK~Dl~~~~~~~~~~i~~~~~~~~ 188 (434)
T 1zun_B 161 VVAINKMDLNGFDERVFESIKADYLKFA 188 (434)
T ss_dssp EEEEECTTTTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEcCcCCcccHHHHHHHHHHHHHHH
Confidence 999999999974 33334455565543
No 13
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.07 E-value=1.9e-10 Score=102.73 Aligned_cols=76 Identities=16% Similarity=0.263 Sum_probs=62.0
Q ss_pred CcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCC-hhh
Q psy13818 124 NEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVK-EGQ 194 (207)
Q Consensus 124 G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~-~~~ 194 (207)
+.++.|. +.|||.+|+ +||..++. +|++++. ++||+||+.+++.+|++++|+++||||+++ .+.
T Consensus 74 ~~~~~ii-DtpG~~~f~-----~~~~~~~~~aD~~ilVvda~~g~-~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~ 146 (405)
T 2c78_A 74 KRHYSHV-DCPGHADYI-----KNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQVGVPYIVVFMNKVDMVDDPEL 146 (405)
T ss_dssp SCEEEEE-ECCCSGGGH-----HHHHHHHTTCSSEEEEEETTTCC-CHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHH
T ss_pred CeEEEEE-ECCChHHHH-----HHHHHHHHHCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCEEEEEEECccccCcHHH
Confidence 5678877 999999999 88876654 8999996 999999999999999999999999999995 333
Q ss_pred HHHHHHHHHhhh
Q psy13818 195 ANEQHEQIVKFV 206 (207)
Q Consensus 195 ~~~~~~eI~~~l 206 (207)
.+...+++++++
T Consensus 147 ~~~~~~~~~~~l 158 (405)
T 2c78_A 147 LDLVEMEVRDLL 158 (405)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344445565553
No 14
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.07 E-value=1e-10 Score=111.02 Aligned_cols=77 Identities=18% Similarity=0.312 Sum_probs=58.0
Q ss_pred CcEEEEEEeecCcceeecccccccccccee--------eecCCCC----C--CCchHHHHHHHHHcCCCeEEEEEecCCC
Q psy13818 124 NEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESC----P--QPQTSEHLAAIEIMKLKHIIILQNKIDL 189 (207)
Q Consensus 124 G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~----~--~pQT~EHl~il~~lGI~~iIV~vNK~Dl 189 (207)
+.++.|+ +.|||.+|+ +||+.|+. |||++|. . +|||+||+.++..+|++++|||+||||+
T Consensus 254 ~~~i~ii-DTPGh~~f~-----~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl 327 (592)
T 3mca_A 254 KKIYEIG-DAPGHRDFI-----SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL 327 (592)
T ss_dssp -----CC-EEESSSEEE-----EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGG
T ss_pred CeEEEEE-ECCChHHHH-----HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 5567776 999999999 99999876 8888762 3 8999999999999999999999999999
Q ss_pred CC--hhhHHHHHHHHHhhh
Q psy13818 190 VK--EGQANEQHEQIVKFV 206 (207)
Q Consensus 190 V~--~~~~~~~~~eI~~~l 206 (207)
++ .++.++..+++.+++
T Consensus 328 ~~~~~~~~~~i~~el~~~l 346 (592)
T 3mca_A 328 MSWSEDRFQEIKNIVSDFL 346 (592)
T ss_dssp GTTCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 87 344455556666654
No 15
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.05 E-value=1.1e-10 Score=105.81 Aligned_cols=77 Identities=21% Similarity=0.347 Sum_probs=63.2
Q ss_pred CCcEEEEEEeecCcceeecccccccccccee--------eecCCC-------CCCCchHHHHHHHHHcCCCeEEEEEecC
Q psy13818 123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNES-------CPQPQTSEHLAAIEIMKLKHIIILQNKI 187 (207)
Q Consensus 123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg-------~~~pQT~EHl~il~~lGI~~iIV~vNK~ 187 (207)
.+.++.|. +.|||.+|. +||..++. +||++| + ++||+||+.+++.+|++++||++|||
T Consensus 82 ~~~~~~ii-DtpG~~~f~-----~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~-~~qt~~~~~~~~~~~~~~iivviNK~ 154 (435)
T 1jny_A 82 KKYFFTII-DAPGHRDFV-----KNMITGASQADAAILVVSAKKGEYEAGMSV-EGQTREHIILAKTMGLDQLIVAVNKM 154 (435)
T ss_dssp SSCEEEEC-CCSSSTTHH-----HHHHHTSSCCSEEEEEEECSTTHHHHHHST-TCHHHHHHHHHHHTTCTTCEEEEECG
T ss_pred CCeEEEEE-ECCCcHHHH-----HHHHhhhhhcCEEEEEEECCCCcccccccc-chHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 35678887 999999999 88877755 899987 6 99999999999999999999999999
Q ss_pred CCCCh----hhHHHHHHHHHhhh
Q psy13818 188 DLVKE----GQANEQHEQIVKFV 206 (207)
Q Consensus 188 DlV~~----~~~~~~~~eI~~~l 206 (207)
|+++. ++.++..+++++++
T Consensus 155 Dl~~~~~~~~~~~~~~~~i~~~~ 177 (435)
T 1jny_A 155 DLTEPPYDEKRYKEIVDQVSKFM 177 (435)
T ss_dssp GGSSSTTCHHHHHHHHHHHHHHH
T ss_pred cCCCccccHHHHHHHHHHHHHHH
Confidence 99982 33344556666654
No 16
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.01 E-value=8.8e-11 Score=107.50 Aligned_cols=76 Identities=21% Similarity=0.310 Sum_probs=61.9
Q ss_pred CcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCC-------chHHHHHHHHHcCCCeEEEEEecCC
Q psy13818 124 NEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQP-------QTSEHLAAIEIMKLKHIIILQNKID 188 (207)
Q Consensus 124 G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~p-------QT~EHl~il~~lGI~~iIV~vNK~D 188 (207)
+.++.|. +.|||.+|+ +||++|+. |||++|. +| ||+||+.+++.+|++++|||+||||
T Consensus 84 ~~~~~ii-DtPGh~~f~-----~~~~~~~~~aD~~ilVvda~~g~-~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~D 156 (458)
T 1f60_A 84 KYQVTVI-DAPGHRDFI-----KNMITGTSQADCAILIIAGGVGE-FEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD 156 (458)
T ss_dssp SEEEEEE-ECCCCTTHH-----HHHHHSSSCCSEEEEEEECSHHH-HHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGG
T ss_pred CceEEEE-ECCCcHHHH-----HHHHhhhhhCCEEEEEEeCCcCc-cccccCcchhHHHHHHHHHHcCCCeEEEEEEccc
Confidence 4567776 999999999 99988766 8898885 56 9999999999999999999999999
Q ss_pred CCC--hhhHHHHHHHHHhhh
Q psy13818 189 LVK--EGQANEQHEQIVKFV 206 (207)
Q Consensus 189 lV~--~~~~~~~~~eI~~~l 206 (207)
+++ ++..++..+++++++
T Consensus 157 l~~~~~~~~~~i~~~~~~~l 176 (458)
T 1f60_A 157 SVKWDESRFQEIVKETSNFI 176 (458)
T ss_dssp GGTTCHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHH
Confidence 995 344445556666553
No 17
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.00 E-value=3.3e-10 Score=103.90 Aligned_cols=86 Identities=14% Similarity=0.249 Sum_probs=64.8
Q ss_pred ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCC------CCCchHHHHHHHHH
Q psy13818 109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESC------PQPQTSEHLAAIEI 174 (207)
Q Consensus 109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~------~~pQT~EHl~il~~ 174 (207)
|..+.++..+ +.++.|. +.|||.+|+ +||..++. |||++|. .++||+||+.+++.
T Consensus 100 ~~~~~~~~~~-----~~~~~ii-DTPG~~~f~-----~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~ 168 (483)
T 3p26_A 100 SICTSHFSTH-----RANFTIV-DAPGHRDFV-----PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS 168 (483)
T ss_dssp CCCEEEEECS-----SCEEEEE-CCCCCGGGH-----HHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH
T ss_pred EeeeEEEecC-----CceEEEE-ECCCcHHHH-----HHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH
Confidence 5556666553 5577777 999999999 88887755 8898872 37999999999999
Q ss_pred cCCCeEEEEEecCCCCChh--hHHHHHHHHHhh
Q psy13818 175 MKLKHIIILQNKIDLVKEG--QANEQHEQIVKF 205 (207)
Q Consensus 175 lGI~~iIV~vNK~DlV~~~--~~~~~~~eI~~~ 205 (207)
+|++++|||+||||+++++ ..++..+++.++
T Consensus 169 ~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~ 201 (483)
T 3p26_A 169 LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPY 201 (483)
T ss_dssp TTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEECcCcccchHHHHHHHHHHHHHH
Confidence 9999999999999999843 233334444443
No 18
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.87 E-value=1.8e-09 Score=111.18 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=63.6
Q ss_pred CCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh-h
Q psy13818 123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE-G 193 (207)
Q Consensus 123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~-~ 193 (207)
.+.++.|. +.|||.+|+ +||+.|+. |||++|. ++||+||+.+++.+|++++|||+||||+++. +
T Consensus 357 ~~~kI~II-DTPGHedF~-----~~mi~gas~AD~aILVVDAtdGv-~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e 429 (1289)
T 3avx_A 357 PTRHYAHV-DCPGHADYV-----KNMITGAAQMDGAILVVAATDGP-MPQTREHILLGRQVGVPYIIVFLNKCDMVDDEE 429 (1289)
T ss_dssp SSCEEEEE-ECCCHHHHH-----HHHHHTSCCCSEEEEEEETTTCS-CTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHH
T ss_pred CCEEEEEE-ECCChHHHH-----HHHHHHHhhCCEEEEEEcCCccC-cHHHHHHHHHHHHcCCCeEEEEEeecccccchh
Confidence 35678887 999999999 99987765 8999996 9999999999999999999999999999963 3
Q ss_pred hHHHHHHHHHhhh
Q psy13818 194 QANEQHEQIVKFV 206 (207)
Q Consensus 194 ~~~~~~~eI~~~l 206 (207)
..+...+++++++
T Consensus 430 ~le~i~eEi~elL 442 (1289)
T 3avx_A 430 LLELVEMEVRELL 442 (1289)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3344556666654
No 19
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.85 E-value=2.5e-09 Score=101.94 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=56.0
Q ss_pred CCcEEEEEEeecCcceeecccccccccccee--------eecCCCC------CCCchHHHHHHHHHcCCCeEEEEEecCC
Q psy13818 123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESC------PQPQTSEHLAAIEIMKLKHIIILQNKID 188 (207)
Q Consensus 123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~------~~pQT~EHl~il~~lGI~~iIV~vNK~D 188 (207)
.+.++.|. +.|||.+|+ +||+.++. |||++|. .++||+||+.++..+|++++|||+||||
T Consensus 243 ~~~~~~ii-DTPG~e~f~-----~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiD 316 (611)
T 3izq_1 243 HRANFTIV-DAPGHRDFV-----PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMD 316 (611)
T ss_dssp SSCEEEEE-ECCSSSCHH-----HHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTT
T ss_pred CCceEEEE-ECCCCcccH-----HHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccc
Confidence 35678777 999999999 88888765 8888761 3799999999999999999999999999
Q ss_pred CCChh
Q psy13818 189 LVKEG 193 (207)
Q Consensus 189 lV~~~ 193 (207)
+++++
T Consensus 317 l~~~~ 321 (611)
T 3izq_1 317 NVDWS 321 (611)
T ss_dssp TTTTC
T ss_pred ccchh
Confidence 99843
No 20
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.66 E-value=1.1e-08 Score=97.55 Aligned_cols=83 Identities=19% Similarity=0.175 Sum_probs=66.9
Q ss_pred cccCCcEEEEEEeecCcceeeccccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHH
Q psy13818 120 CTEVNEKIALSRRVEKHWSLIEGTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQAN 196 (207)
Q Consensus 120 c~~~G~kiaIsR~V~gh~rligg~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~ 196 (207)
|.|.+.++-|+ +.|||-+|.+=+.. -.+++||. |||.+|+ ||||+.|+..+...|++. |+++||||....+. .
T Consensus 62 ~~~~~~~iNlI-DTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV-~~qT~~v~~~a~~~~lp~-i~~INKmDr~~a~~-~ 137 (638)
T 3j25_A 62 FQWENTKVNII-DTPGHMDFLAEVYRSLSVLDGAILLISAKDGV-QAQTRILFHALRKMGIPT-IFFINKIDQNGIDL-S 137 (638)
T ss_dssp CBCSSCBCCCE-ECCCSSSTHHHHHHHHTTCSEEECCEESSCTT-CSHHHHHHHHHHHHTCSC-EECCEECCSSSCCS-H
T ss_pred EEECCEEEEEE-ECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCC-cHHHHHHHHHHHHcCCCe-EEEEeccccccCCH-H
Confidence 45678899998 99999999953333 46777877 9999997 999999999999999996 57799999977653 4
Q ss_pred HHHHHHHhhh
Q psy13818 197 EQHEQIVKFV 206 (207)
Q Consensus 197 ~~~~eI~~~l 206 (207)
...++|++.|
T Consensus 138 ~~~~~i~~~l 147 (638)
T 3j25_A 138 TVYQDIKEKL 147 (638)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 5667776654
No 21
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.53 E-value=7.6e-08 Score=90.45 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=53.7
Q ss_pred CCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818 123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~ 192 (207)
.+.++.|. +.|||.+|. .+|..|+. +|+++|. +|||+||+..++.++++ +||++||||+.+.
T Consensus 49 ~~~~i~~i-DTPGhe~f~-----~~~~~~~~~aD~aILVVda~~g~-~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~ 118 (501)
T 1zo1_I 49 ENGMITFL-DTPGHAAFT-----SMRARGAQATDIVVLVVAADDGV-MPQTIEAIQHAKAAQVP-VVVAVNKIDKPEA 118 (501)
T ss_dssp TSSCCCEE-CCCTTTCCT-----TSBCSSSBSCSSEEEEEETTTBS-CTTTHHHHHHHHHTTCC-EEEEEECSSSSTT
T ss_pred CCEEEEEE-ECCCcHHHH-----HHHHHHHhhCCEEEEEeecccCc-cHHHHHHHHHHHhcCce-EEEEEEecccccc
Confidence 45678887 999999999 66666654 8999997 99999999999999998 9999999999864
No 22
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.50 E-value=1.5e-07 Score=88.69 Aligned_cols=82 Identities=12% Similarity=0.097 Sum_probs=67.3
Q ss_pred ccCCcEEEEEEeecCcceeeccccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHH
Q psy13818 121 TEVNEKIALSRRVEKHWSLIEGTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANE 197 (207)
Q Consensus 121 ~~~G~kiaIsR~V~gh~rligg~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~ 197 (207)
.|.+.++-|+ +.|||-+|.|=+.- =.+++||. |||.+|+ ||||+..+..+...+++. |+++||||....+ ..+
T Consensus 96 ~~~~~~iNlI-DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV-~~qT~~v~~~a~~~~lp~-i~fINK~Dr~~ad-~~~ 171 (548)
T 3vqt_A 96 PYRDRVVNLL-DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGV-EAQTRKLMDVCRMRATPV-MTFVNKMDREALH-PLD 171 (548)
T ss_dssp EETTEEEEEE-CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBS-CHHHHHHHHHHHHTTCCE-EEEEECTTSCCCC-HHH
T ss_pred EECCEEEEEE-eCCCcHHHHHHHHHHHHhcCceEEEeecCCCc-ccccHHHHHHHHHhCCce-EEEEecccchhcc-hhH
Confidence 4578899998 99999999953333 47889988 9999998 999999999999999985 6789999997755 345
Q ss_pred HHHHHHhhh
Q psy13818 198 QHEQIVKFV 206 (207)
Q Consensus 198 ~~~eI~~~l 206 (207)
..++|++.|
T Consensus 172 ~~~~i~~~l 180 (548)
T 3vqt_A 172 VMADIEQHL 180 (548)
T ss_dssp HHHHHHHHH
T ss_pred hhhhhhhhc
Confidence 667777654
No 23
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.27 E-value=1.9e-06 Score=83.01 Aligned_cols=93 Identities=16% Similarity=0.087 Sum_probs=68.9
Q ss_pred eEEEEeeCcccccCCcEEEEEEeecCcceeeccccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEec
Q psy13818 110 LAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNK 186 (207)
Q Consensus 110 la~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK 186 (207)
.+.++++..-....+.++-|+ +.|||-+|.+=+.. =.+.+||. |||.||+ ++||+..+..+...|++ .|+++||
T Consensus 70 ~~s~~~~~~~~~~~~~~iNlI-DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV-~~qT~~v~~~a~~~~lp-~i~~iNK 146 (709)
T 4fn5_A 70 AVTTFWKGSRGQYDNYRVNVI-DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGV-EPQSETVWRQANKYGVP-RIVYVNK 146 (709)
T ss_dssp EEEEEECCTTSCSCCEEEEEE-CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCS-CHHHHHHHHHHHHHTCC-EEEEEEC
T ss_pred eEEEEeccCcCCCCCEEEEEE-eCCCCcccHHHHHHHHHHhCeEEEEEECCCCC-chhHHHHHHHHHHcCCC-eEEEEcc
Confidence 344555443222235588888 99999999953333 47889988 9999998 99999999999999998 5778999
Q ss_pred CCCCChhhHHHHHHHHHhhh
Q psy13818 187 IDLVKEGQANEQHEQIVKFV 206 (207)
Q Consensus 187 ~DlV~~~~~~~~~~eI~~~l 206 (207)
||....+ .....++|++.+
T Consensus 147 iDr~~a~-~~~~~~ei~~~l 165 (709)
T 4fn5_A 147 MDRQGAN-FLRVVEQIKKRL 165 (709)
T ss_dssp SSSTTCC-HHHHHHHHHHHH
T ss_pred ccccCcc-HHHHHHHhhhhc
Confidence 9997654 244566666543
No 24
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.21 E-value=4.7e-07 Score=85.72 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=52.6
Q ss_pred CCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818 123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~ 192 (207)
.|.++.|. +.|||.+|. ++|..++. +|+++|. +|||+||+..+...+++ +|||+||+|+.+.
T Consensus 50 ~g~~i~~i-DTPGhe~f~-----~~~~~~~~~aD~vILVVDa~dg~-~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~ 119 (537)
T 3izy_P 50 SGEKITFL-DTPGHAAFS-----AMRARGTQVTDIVILVVAADDGV-MKQTVESIQHAKDAHVP-IVLAINKCDKAEA 119 (537)
T ss_dssp CSSCCBCE-ECSSSCCTT-----TSBBSSSBSBSSCEEECBSSSCC-CHHHHHHHHHHHTTTCC-EEECCBSGGGTTT
T ss_pred CCCEEEEE-ECCChHHHH-----HHHHHHHccCCEEEEEEECCCCc-cHHHHHHHHHHHHcCCc-EEEEEeccccccc
Confidence 45577777 999999999 66655544 8899997 99999999999999997 8999999999764
No 25
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.08 E-value=3.7e-06 Score=78.91 Aligned_cols=80 Identities=13% Similarity=0.089 Sum_probs=60.3
Q ss_pred CCcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHH
Q psy13818 123 VNEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQH 199 (207)
Q Consensus 123 ~G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~ 199 (207)
.+.++.|. +.|||.+|.. ..-.-...+++. +|+.++. ++||++|+..+...+++ +|+++||+|+.+.+. .+..
T Consensus 80 ~~~~i~li-DTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~-~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~-~~~~ 155 (529)
T 2h5e_A 80 HDCLVNLL-DTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGV-EDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP-MELL 155 (529)
T ss_dssp TTEEEEEE-CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCS-CHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH-HHHH
T ss_pred CCeEEEEE-ECCCChhHHHHHHHHHHHCCEEEEEEeCCccc-hHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH-HHHH
Confidence 46678887 9999999984 111123345544 8999997 99999999999999998 899999999987653 3456
Q ss_pred HHHHhhh
Q psy13818 200 EQIVKFV 206 (207)
Q Consensus 200 ~eI~~~l 206 (207)
+++++.+
T Consensus 156 ~~i~~~l 162 (529)
T 2h5e_A 156 DEVENEL 162 (529)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666654
No 26
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.07 E-value=3e-06 Score=81.26 Aligned_cols=76 Identities=20% Similarity=0.139 Sum_probs=57.1
Q ss_pred EEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHH
Q psy13818 126 KIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQI 202 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI 202 (207)
++.|. +.|||.+|.+ +.-.-...+|+. |||++|. ++||.+|+..+...+++ +|+|+||||+.+.+ .++..+++
T Consensus 74 ~inli-DTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv-~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~-~~~v~~el 149 (600)
T 2ywe_A 74 KLHLI-DTPGHVDFSYEVSRALAACEGALLLIDASQGI-EAQTVANFWKAVEQDLV-IIPVINKIDLPSAD-VDRVKKQI 149 (600)
T ss_dssp EEEEE-CCCCSGGGHHHHHHHHHTCSEEEEEEETTTBC-CHHHHHHHHHHHHTTCE-EEEEEECTTSTTCC-HHHHHHHH
T ss_pred EEEEE-ECCCcHhHHHHHHHHHHhCCEEEEEEECCCCc-cHHHHHHHHHHHHCCCC-EEEEEeccCccccC-HHHHHHHH
Confidence 56676 9999999984 111123345555 9999997 99999999999999998 89999999998754 23445556
Q ss_pred Hhh
Q psy13818 203 VKF 205 (207)
Q Consensus 203 ~~~ 205 (207)
.+.
T Consensus 150 ~~~ 152 (600)
T 2ywe_A 150 EEV 152 (600)
T ss_dssp HHT
T ss_pred HHh
Confidence 554
No 27
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.04 E-value=5.3e-06 Score=79.35 Aligned_cols=77 Identities=16% Similarity=0.133 Sum_probs=57.2
Q ss_pred cEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHH
Q psy13818 125 EKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQ 201 (207)
Q Consensus 125 ~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~e 201 (207)
.++.|. +.|||.+|.+ +.-.-...+|+. +||++|. ++||.+|+..+...+++ +|+|+||+|+.+.+ .++..++
T Consensus 71 ~~l~li-DTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv-~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~-~~~v~~e 146 (599)
T 3cb4_D 71 YQLNFI-DTPGHVDFSYEVSRSLAACEGALLVVDAGQGV-EAQTLANCYTAMEMDLE-VVPVLNKIDLPAAD-PERVAEE 146 (599)
T ss_dssp EEEEEE-ECCCCGGGHHHHHHHHHHCSEEEEEEETTTCC-CTHHHHHHHHHHHTTCE-EEEEEECTTSTTCC-HHHHHHH
T ss_pred EEEEEE-ECCCchHHHHHHHHHHHHCCEEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEeeeccCccccc-HHHHHHH
Confidence 367776 9999999984 221223345555 9999997 99999999999999996 89999999998754 2334455
Q ss_pred HHhh
Q psy13818 202 IVKF 205 (207)
Q Consensus 202 I~~~ 205 (207)
+.+.
T Consensus 147 i~~~ 150 (599)
T 3cb4_D 147 IEDI 150 (599)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 28
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.04 E-value=9.1e-06 Score=77.52 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=49.5
Q ss_pred EEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCC
Q psy13818 126 KIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVK 191 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~ 191 (207)
.+.|. +.|||.+|.. +.-.-...+++. +|+++|+ +|||.||+..++..+++ +|||+||||+.+
T Consensus 71 ~i~li-DTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv-~~qT~e~l~~l~~~~vP-iIVViNKiDl~~ 136 (594)
T 1g7s_A 71 GLFFI-DTPGHEAFTTLRKRGGALADLAILIVDINEGF-KPQTQEALNILRMYRTP-FVVAANKIDRIH 136 (594)
T ss_dssp EEEEE-CCCTTSCCTTSBCSSSBSCSEEEEEEETTTCC-CHHHHHHHHHHHHTTCC-EEEEEECGGGST
T ss_pred CEEEE-ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc-cHhHHHHHHHHHHcCCe-EEEEeccccccc
Confidence 47776 9999999983 111112234444 9999997 99999999999999998 899999999974
No 29
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.76 E-value=7.3e-05 Score=72.28 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=59.2
Q ss_pred CcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHH
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHE 200 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~ 200 (207)
..++.|+ +.|||.+|.. ..-.-...+|+. ||+.+|. ++||.+++..+...+++ +++++||+|+...+ ..+..+
T Consensus 81 ~~~i~li-DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~qt~~~~~~~~~~~ip-~ilviNKiD~~~~~-~~~~~~ 156 (704)
T 2rdo_7 81 PHRINII-DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGV-QPQSETVWRQANKYKVP-RIAFVNKMDRMGAN-FLKVVN 156 (704)
T ss_pred ceeEEEE-eCCCccchHHHHHHHHHHCCEEEEEEeCCCCC-cHHHHHHHHHHHHcCCC-EEEEEeCCCccccc-HHHHHH
Confidence 3577777 9999999984 222223346655 9999997 99999999999999997 55679999998755 345667
Q ss_pred HHHhhh
Q psy13818 201 QIVKFV 206 (207)
Q Consensus 201 eI~~~l 206 (207)
++++.+
T Consensus 157 ~l~~~l 162 (704)
T 2rdo_7 157 QIKTRL 162 (704)
T ss_pred HHHHHh
Confidence 776654
No 30
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.70 E-value=7e-05 Score=70.30 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=59.7
Q ss_pred CCcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHH
Q psy13818 123 VNEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQH 199 (207)
Q Consensus 123 ~G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~ 199 (207)
.+.++.|. +.|||.+|.. ..-.-...+++. +|+.++. ++||.+++..+...+++ +|+|+||+|+...+. .+..
T Consensus 80 ~~~~i~li-DTPG~~df~~~~~~~l~~aD~allVvDa~~g~-~~~t~~~~~~~~~~~iP-iivviNK~Dl~~~~~-~~~l 155 (528)
T 3tr5_A 80 KDYLINLL-DTPGHADFTEDTYRTLTAVDSALMVIDAAKGV-EPRTIKLMEVCRLRHTP-IMTFINKMDRDTRPS-IELL 155 (528)
T ss_dssp TTEEEEEE-CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCS-CHHHHHHHHHHHTTTCC-EEEEEECTTSCCSCH-HHHH
T ss_pred CCEEEEEE-ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCC-CHHHHHHHHHHHHcCCC-EEEEEeCCCCccccH-HHHH
Confidence 36678887 9999999986 222223446655 9999997 99999999999999986 788899999976542 3445
Q ss_pred HHHHhhh
Q psy13818 200 EQIVKFV 206 (207)
Q Consensus 200 ~eI~~~l 206 (207)
+++++.+
T Consensus 156 ~ei~~~l 162 (528)
T 3tr5_A 156 DEIESIL 162 (528)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 5665543
No 31
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.63 E-value=8.6e-05 Score=66.43 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=73.7
Q ss_pred ccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCce
Q psy13818 10 CRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEV 89 (207)
Q Consensus 10 ~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~ 89 (207)
.+.|--.|.+++. +. ++..+++.++.+|.. ..+|+.|..
T Consensus 263 ~~~~i~~Gdvl~~-~~--~~~~~f~a~v~~l~~--------------------------------------~~~i~~g~~ 301 (370)
T 2elf_A 263 QAKDIERGFIISD-KE--IVTTDYTLECTVSKF--------------------------------------TKKIEPASV 301 (370)
T ss_dssp CGGGCCTTCEEES-CC--EEEEEEEEEEEECTT--------------------------------------SCCBCTTCE
T ss_pred CHHHcCCceEEEC-CC--ceeEEEEEEEEEECC--------------------------------------CCCCCCCCE
Confidence 3456677888888 54 788888888766511 367899999
Q ss_pred EEEEeeccccceEEEEEe--cc-----------eEEEEeeCcccccCCcEEEEEEeecCcceeec-ccc
Q psy13818 90 LLVNIGSLSTGGRVLATK--AD-----------LAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTV 144 (207)
Q Consensus 90 lmlniGs~~t~g~V~~~~--~D-----------la~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~ 144 (207)
.++.+||..+.|+|..++ .| .+.+.|..|+|.+.|+|..+. +-..+||.+| |.+
T Consensus 302 ~~~~~~t~~~~~~v~~l~~d~~~~~~~~~g~~~~v~l~~~~pi~~~~~~rfilr-~~~~~~~tig~G~~ 369 (370)
T 2elf_A 302 LHLFVGLQSEPVRVEKILVDGNEVEEAKPGSTCVLELSGNKKLAYSKQDRFLLA-NLDLTQRFAAYGFS 369 (370)
T ss_dssp EEEEETTEEEEEEEEEEEETTEEESCBCTTCEEEEEEEEEEEEEECTTSCEEEE-CTTSSSCEEEEEEE
T ss_pred EEEEEcCCEEEEEEEEEEeCCCcceeecCCCEEEEEEEECcEEEEeCCCEEEEE-ECCCCCEEEEEEEe
Confidence 999999999999999984 22 567788999999999988874 6666799998 543
No 32
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.47 E-value=0.00016 Score=64.38 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=76.1
Q ss_pred cccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCc
Q psy13818 9 LCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNE 88 (207)
Q Consensus 9 l~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E 88 (207)
+.+.|--.|.+++.++. |+...+++.++++|..-- ..+..+|..|.
T Consensus 275 i~~~~i~~G~~l~~~~~-~~~~~~f~a~v~~l~~~~---------------------------------~~~~~~~~~g~ 320 (397)
T 1d2e_A 275 LKREDLRRGLVMAKPGS-IQPHQKVEAQVYILTKEE---------------------------------GGRHKPFVSHF 320 (397)
T ss_dssp CCGGGCCTTCEEESTTS-CCCEEEEEEEEEECCGGG---------------------------------TSCSSCBCTTC
T ss_pred cchhccCceeEEeCCCC-CCcccEEEEEEEEecccc---------------------------------ccCccccCCCC
Confidence 35677888999999996 666899999988774322 11356899999
Q ss_pred eEEEEeeccccceEEEEEe--------cc--eEEEEeeCcccccCCcEEEEEEeecCcceeec-cccc
Q psy13818 89 VLLVNIGSLSTGGRVLATK--------AD--LAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTVT 145 (207)
Q Consensus 89 ~lmlniGs~~t~g~V~~~~--------~D--la~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~~ 145 (207)
..++.+||+...|+|. +. .| .+.+.|..|+|.+.|.|..| |+ .|+.+| |.|.
T Consensus 321 ~~~~~~~t~~~~~~i~-l~~~~~~l~~~~~~~v~~~~~~p~~~~~~~r~~l-r~---~~~ti~~G~i~ 383 (397)
T 1d2e_A 321 MPVMFSLTWDMACRII-LPPGKELAMPGEDLKLTLILRQPMILEKGQRFTL-RD---GNRTIGTGLVT 383 (397)
T ss_dssp CCEEEETTEEEEEEEE-CCSSCCCBCTTCEEEEEEEEEEEECCCTTCEEEE-EE---TTEEEEEEEEE
T ss_pred EEEEEEecCEEEEEEE-EcCCcccccCCCEEEEEEEECCeEEEccCCeEEE-Ee---CCeEEEEEEEe
Confidence 9999999999999997 42 34 45667789999999999987 55 468888 7765
No 33
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.39 E-value=0.00022 Score=68.78 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=60.0
Q ss_pred CCcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHH
Q psy13818 123 VNEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQH 199 (207)
Q Consensus 123 ~G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~ 199 (207)
.+.++.|. +.|||.+|.. +.-.-...+++. +|+.++. ++||.+++..+...+++ +++++||+|+...+ ..+..
T Consensus 75 ~~~~i~li-DTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~-~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~-~~~~~ 150 (691)
T 1dar_A 75 KDHRINII-DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV-EPQSETVWRQAEKYKVP-RIAFANKMDKTGAD-LWLVI 150 (691)
T ss_dssp TTEEEEEE-CCCSSTTCHHHHHHHHHHCSEEEEEEETTTCS-CHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC-HHHHH
T ss_pred CCeEEEEE-ECcCccchHHHHHHHHHHCCEEEEEEECCCCc-chhhHHHHHHHHHcCCC-EEEEEECCCcccCC-HHHHH
Confidence 46678887 9999999874 222223446655 9999997 99999999999999987 56779999998754 34566
Q ss_pred HHHHhhh
Q psy13818 200 EQIVKFV 206 (207)
Q Consensus 200 ~eI~~~l 206 (207)
+++++.+
T Consensus 151 ~~l~~~l 157 (691)
T 1dar_A 151 RTMQERL 157 (691)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 6776654
No 34
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.31 E-value=0.00027 Score=62.94 Aligned_cols=97 Identities=24% Similarity=0.243 Sum_probs=75.6
Q ss_pred ccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCce
Q psy13818 10 CRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEV 89 (207)
Q Consensus 10 ~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~ 89 (207)
.+.|--.|.+++.++. |+...+++.++++|..-- ..+..+|..|..
T Consensus 294 ~~~~i~~G~~l~~~~~-~~~~~~f~a~v~~l~~~~---------------------------------~~~~~~~~~g~~ 339 (405)
T 2c78_A 294 SREEVERGQVLAKPGS-ITPHTKFEASVYVLKKEE---------------------------------GGRHTGFFSGYR 339 (405)
T ss_dssp CTTTCCTTCEEESTTS-SEEEEEEEEEEEECCGGG---------------------------------TSCSSCBCTTCC
T ss_pred cHhhcCceEEEEcCCC-CceeEEEEEEEEEecccC---------------------------------CCccccccCCce
Confidence 4677788999999996 677899999988874321 113557899999
Q ss_pred EEEEeeccccceEEEEEe--------cc--eEEEEeeCcccccCCcEEEEEEeecCcceeec-cccc
Q psy13818 90 LLVNIGSLSTGGRVLATK--------AD--LAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTVT 145 (207)
Q Consensus 90 lmlniGs~~t~g~V~~~~--------~D--la~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~~ 145 (207)
.++.+||+.+.|+|. +. .| .+.+.|..|+|.+.|.|..| |+ .|+.|| |.|.
T Consensus 340 ~~~~~~t~~~~~~i~-~~~~~~~l~~~~~~~v~~~~~~p~~~~~~~rf~l-r~---~~~ti~~G~i~ 401 (405)
T 2c78_A 340 PQFYFRTTDVTGVVQ-LPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAI-RE---GGRTVGAGVVT 401 (405)
T ss_dssp CEEEETTEEEEEEEE-CCTTCCCBCTTCEEEEEEEEEEEEEECTTCEEEE-EE---TTEEEEEEEEE
T ss_pred EEEEEcccEEEEEEE-EccCccccCCCCEEEEEEEECceEEEccCCEEEE-Ec---CCeEEEEEEEE
Confidence 999999999999998 43 23 45677889999999999887 56 468888 7665
No 35
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.25 E-value=0.00055 Score=63.14 Aligned_cols=94 Identities=16% Similarity=0.206 Sum_probs=72.5
Q ss_pred cccceeec-cCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceEE
Q psy13818 13 DRLVGQVL-GAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLL 91 (207)
Q Consensus 13 d~lvG~v~-g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~lm 91 (207)
|--.|.|+ +.++.++ ...+++.++.+|+. . ..+|+.|..++
T Consensus 273 ~i~~Gdvl~~~~~~~~-~~~~~~a~v~~l~~-----------------------------------~--~~~l~~g~~~~ 314 (482)
T 1wb1_A 273 QIYRGXILTSKDTKLQ-TVDKIVAKIKISDI-----------------------------------F--KYNLTPKMKVH 314 (482)
T ss_dssp CCCSSCBCCCTTCCCC-CEEEEEECCCCCSS-----------------------------------C--CSCCCSSCEEE
T ss_pred hccccceEecCCCCCc-eeeEEEEEEEEecc-----------------------------------C--CcccCCCCEEE
Confidence 44568888 8887655 45788888866621 1 36899999999
Q ss_pred EEeeccccceEEEEEe------------c------c--eEEEEeeCcccccCCcEEEEEEeecCc---ceeec-cccc
Q psy13818 92 VNIGSLSTGGRVLATK------------A------D--LAKISLTNPVCTEVNEKIALSRRVEKH---WSLIE-GTVT 145 (207)
Q Consensus 92 lniGs~~t~g~V~~~~------------~------D--la~i~L~~Pvc~~~G~kiaIsR~V~gh---~rlig-g~~~ 145 (207)
+.+||..+.|+|..+. . | .+.+.|..|+|.+.|.|..+. +...+ ||.+| |.|.
T Consensus 315 l~~~t~~~~~~v~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr-~~~~~~~~~~tvg~G~v~ 391 (482)
T 1wb1_A 315 LNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLIT-RLDLPPTTLRIXGHGLIE 391 (482)
T ss_dssp EEETTEEEEEEEEEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEE-CTTSCTTSCCCCCBCCEE
T ss_pred EEEcccEEEEEEEEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEE-ECCCCccCceEeeEEEEE
Confidence 9999999999999887 1 2 567788899999999998875 54444 99998 7775
No 36
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.23 E-value=0.00029 Score=67.58 Aligned_cols=78 Identities=12% Similarity=0.086 Sum_probs=55.1
Q ss_pred CcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHH
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHE 200 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~ 200 (207)
+.++.|. +.+||.+|.. ..-.-....++. +|+.+|. ++||++|+..+...+++.+ +++||+|+. ....+..+
T Consensus 73 ~~~~nli-DTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~-~~qt~~~~~~~~~~~ip~i-lv~NKiD~~--~~~~~~~~ 147 (665)
T 2dy1_A 73 GHRVFLL-DAPGYGDFVGEIRGALEAADAALVAVSAEAGV-QVGTERAWTVAERLGLPRM-VVVTKLDKG--GDYYALLE 147 (665)
T ss_dssp TEEEEEE-ECCCSGGGHHHHHHHHHHCSEEEEEEETTTCS-CHHHHHHHHHHHHTTCCEE-EEEECGGGC--CCHHHHHH
T ss_pred CEEEEEE-eCCCccchHHHHHHHHhhcCcEEEEEcCCccc-chhHHHHHHHHHHccCCEE-EEecCCchh--hhHHHHHH
Confidence 4466665 8999999873 111112234443 8999996 9999999999999998755 679999998 33455566
Q ss_pred HHHhhh
Q psy13818 201 QIVKFV 206 (207)
Q Consensus 201 eI~~~l 206 (207)
++++.+
T Consensus 148 ~l~~~l 153 (665)
T 2dy1_A 148 DLRSTL 153 (665)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666543
No 37
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.20 E-value=0.0005 Score=66.32 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=58.7
Q ss_pred CCcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHH
Q psy13818 123 VNEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQH 199 (207)
Q Consensus 123 ~G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~ 199 (207)
.+.++.|. +.|||.+|.. ..-.-...+++. +|+.++. ++||.+++..+...+++ +|+++||+|+...+ ..+..
T Consensus 73 ~~~~i~li-DTPG~~df~~~~~~~l~~aD~~llVvDa~~g~-~~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~~-~~~~~ 148 (693)
T 2xex_A 73 EGHRVNII-DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGV-EPQTETVWRQATTYGVP-RIVFVNKMDKLGAN-FEYSV 148 (693)
T ss_dssp TTEEEEEE-CCCCCSSCCHHHHHHHHHCSEEEEEEETTTBS-CHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC-HHHHH
T ss_pred CCeeEEEE-ECcCCcchHHHHHHHHHHCCEEEEEECCCCCC-cHHHHHHHHHHHHcCCC-EEEEEECCCccccc-hHHHH
Confidence 46678887 9999999874 221122345555 8999997 99999999999999986 67789999998754 34455
Q ss_pred HHHHhhh
Q psy13818 200 EQIVKFV 206 (207)
Q Consensus 200 ~eI~~~l 206 (207)
+++++.+
T Consensus 149 ~~l~~~l 155 (693)
T 2xex_A 149 STLHDRL 155 (693)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666543
No 38
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.09 E-value=0.00026 Score=69.76 Aligned_cols=64 Identities=20% Similarity=0.093 Sum_probs=50.4
Q ss_pred CcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCC
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLV 190 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV 190 (207)
+.++.|. +.|||.+|.+ +.-.-...+|+. +|+.+|. ++||.+++..+...+++ +|+++||+|+.
T Consensus 97 ~~~i~li-DTPG~~df~~~~~~~l~~aD~ailVvDa~~g~-~~qt~~~~~~~~~~~~p-~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLI-DSPGHVDFSSEVTAALRVTDGALVVVDTIEGV-CVQTETVLRQALGERIK-PVVVINKVDRA 163 (842)
T ss_dssp EEEEEEE-CCCCCCSSCHHHHHHHHTCSEEEEEEETTTBS-CHHHHHHHHHHHHTTCE-EEEEEECHHHH
T ss_pred CceEEEE-ECcCchhhHHHHHHHHHhCCEEEEEEeCCCCC-CHHHHHHHHHHHHcCCC-eEEEEECCCcc
Confidence 4567776 9999999985 322223456666 9999997 99999998888888886 57899999987
No 39
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.80 E-value=0.0019 Score=58.22 Aligned_cols=91 Identities=11% Similarity=0.171 Sum_probs=69.6
Q ss_pred cccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceEEE
Q psy13818 13 DRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLV 92 (207)
Q Consensus 13 d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~lml 92 (207)
|--.|.|++.++..|++..+++.++.+|. ..+|+.|...++
T Consensus 315 ~i~~G~~l~~~~~~~~~~~~f~a~~~~l~---------------------------------------~~~l~~g~~~~~ 355 (434)
T 1zun_B 315 DISRGDLLVHADNVPQVSDAFDAMLVWMA---------------------------------------EEPMLPGKKYDI 355 (434)
T ss_dssp CCCTTCEEEETTSCCCEEEEEEEEEEECC---------------------------------------SSCBCTTCCEEE
T ss_pred ccCCccEEECCCCCCCcccEEEEEEEEec---------------------------------------cccCCCCCEEEE
Confidence 33469999999999999999999876551 137899999999
Q ss_pred EeeccccceEEEEEec------------------c--eEEEEeeCcccccCCc------EEEEEEeecCcceeec-ccc
Q psy13818 93 NIGSLSTGGRVLATKA------------------D--LAKISLTNPVCTEVNE------KIALSRRVEKHWSLIE-GTV 144 (207)
Q Consensus 93 niGs~~t~g~V~~~~~------------------D--la~i~L~~Pvc~~~G~------kiaIsR~V~gh~rlig-g~~ 144 (207)
.+||..+.|+|..+.. | .+.+.|..|+|.+.+. |..+ |+-.+. +-|| |.|
T Consensus 356 ~~~t~~~~~~v~~~~~~~d~~~~~~~~~~~l~~~d~~~v~~~~~~p~~~~~~~~~~~~grf~l-~d~~~~-~tv~~G~i 432 (434)
T 1zun_B 356 KRATSYVPGSIASITHRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIALDGYSSNRTTGAFIV-IDRLTN-GTVAAGMI 432 (434)
T ss_dssp ECSSCEEEEEEEEEEEEECTTTCCCCCCSCBCTTCEEEEEEEEEEEEECCCTTTCTTTTEEEE-ECTTTC-CEEEEEEE
T ss_pred EEcCCEEEEEEEEEeeeeccccccccCccEeCCCCEEEEEEEECCeEEEcccccCCccceEEE-EECCCC-cEEEEEEE
Confidence 9999999999998862 3 4566778999999998 6665 453332 4555 554
No 40
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.73 E-value=0.0044 Score=46.39 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=44.9
Q ss_pred CcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~ 192 (207)
+.++.+. +.+|+.+|-. +.-.-.-.+++. +|++++. .+|+.+++..+...+++ +++|.||+|+.+.
T Consensus 54 ~~~~~l~-Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 54 DKKITFL-DTPGHEAFTTMRARGAQVTDIVILVVAADDGV-MPQTVEAINHAKAANVP-IIVAINKMDKPEA 122 (178)
T ss_dssp TEEEEES-CCCSSSSSSCSCCSSCCCCCEEEEEEETTCCC-CHHHHHHHHHHGGGSCC-EEEEEETTTSSCS
T ss_pred CceEEEE-ECCCCHHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHhCCCC-EEEEEECccCCcC
Confidence 4456554 8888887763 211111123333 7888875 89999998877777776 8999999999874
No 41
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.61 E-value=0.0027 Score=49.92 Aligned_cols=49 Identities=10% Similarity=-0.015 Sum_probs=35.6
Q ss_pred eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHh
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVK 204 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~ 204 (207)
+|+.++. ..+..+.+..++..+++ +|+|+||+|+.+.++..+..+++.+
T Consensus 123 ~d~~~~~-~~~~~~~~~~l~~~~~p-~i~v~nK~Dl~~~~~~~~~~~~~~~ 171 (223)
T 4dhe_A 123 MDARRPL-TELDRRMIEWFAPTGKP-IHSLLTKCDKLTRQESINALRATQK 171 (223)
T ss_dssp EETTSCC-CHHHHHHHHHHGGGCCC-EEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred EeCCCCC-CHHHHHHHHHHHhcCCC-EEEEEeccccCChhhHHHHHHHHHH
Confidence 8888875 66777777777666664 8899999999987765555554444
No 42
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.37 E-value=0.0049 Score=55.57 Aligned_cols=93 Identities=18% Similarity=0.283 Sum_probs=73.0
Q ss_pred cccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceE
Q psy13818 11 RADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVL 90 (207)
Q Consensus 11 ~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~l 90 (207)
..|--.|.+++.++..|....+++.++.+|. .-.+|+.|...
T Consensus 304 ~~~i~~Gd~l~~~~~~~~~~~~f~a~v~~l~--------------------------------------~~~~l~~g~~~ 345 (435)
T 1jny_A 304 KKDIKRGDVVGHPNNPPTVADEFTARIIVVW--------------------------------------HPTALANGYTP 345 (435)
T ss_dssp GGGCCTTCEEECTTSCCCEESEEEEEEEECC--------------------------------------CSSCBCTTCCC
T ss_pred HHHcCCccEecCCCCCceEeEEEEEEEEEEC--------------------------------------CCCcCCCCCEE
Confidence 4566689999999988888999988887651 13578999999
Q ss_pred EEEeeccccceEEEEEe--------------------cce--EEEEeeCcccccCCc------EEEEEEeecCcceeec-
Q psy13818 91 LVNIGSLSTGGRVLATK--------------------ADL--AKISLTNPVCTEVNE------KIALSRRVEKHWSLIE- 141 (207)
Q Consensus 91 mlniGs~~t~g~V~~~~--------------------~Dl--a~i~L~~Pvc~~~G~------kiaIsR~V~gh~rlig- 141 (207)
++.+||+.+.|+|..+. .|. +.+.|..|+|.+.+. |..|. +- ++-+|
T Consensus 346 ~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr-~~---~~tv~~ 421 (435)
T 1jny_A 346 VLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMR-DM---GKTVGV 421 (435)
T ss_dssp EEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEECCCTTTSGGGTEEEEE-ET---TEEEEE
T ss_pred EEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEECceEEEecCCcCCcCccEEEE-EC---CeEEEE
Confidence 99999999999998873 343 566778999999999 88774 52 57887
Q ss_pred cccc
Q psy13818 142 GTVT 145 (207)
Q Consensus 142 g~~~ 145 (207)
|.|.
T Consensus 422 G~i~ 425 (435)
T 1jny_A 422 GIIV 425 (435)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7665
No 43
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.75 E-value=0.014 Score=50.21 Aligned_cols=50 Identities=22% Similarity=0.255 Sum_probs=36.6
Q ss_pred eecCCCCCCCchHHH-HHHHHHcCCCeEEEEEecCCCC-ChhhHHHHHHHHHhh
Q psy13818 154 RTGNESCPQPQTSEH-LAAIEIMKLKHIIILQNKIDLV-KEGQANEQHEQIVKF 205 (207)
Q Consensus 154 V~A~eg~~~pQT~EH-l~il~~lGI~~iIV~vNK~DlV-~~~~~~~~~~eI~~~ 205 (207)
+|++++. .+++.+. +..++..+++ +|+|+||+|++ +.+...+..+++.+.
T Consensus 100 vD~~~~~-~~~~~~~~~~~l~~~~~p-vilV~NK~Dl~~~~~~~~~~~~~l~~~ 151 (308)
T 3iev_A 100 IDATEGW-RPRDEEIYQNFIKPLNKP-VIVVINKIDKIGPAKNVLPLIDEIHKK 151 (308)
T ss_dssp EETTTBS-CHHHHHHHHHHTGGGCCC-EEEEEECGGGSSSGGGGHHHHHHHHHH
T ss_pred EeCCCCC-CchhHHHHHHHHHhcCCC-EEEEEECccCCCCHHHHHHHHHHHHHh
Confidence 8888886 7888777 7777776664 88999999999 555555555555543
No 44
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=95.72 E-value=0.012 Score=61.21 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=76.0
Q ss_pred cccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCc
Q psy13818 9 LCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNE 88 (207)
Q Consensus 9 l~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E 88 (207)
+.+.|--.|+|++.++. |+...+++.++++|.+-- | ....+|..|+
T Consensus 566 I~~~dI~RGdVL~~~~~-~~~~~~F~A~V~~L~~~e------------------------g---------g~~~pi~~G~ 611 (1289)
T 3avx_A 566 IKREEIERGQVLAKPGT-IKPHTKFESEVYILSKDE------------------------G---------GRHTPFFKGY 611 (1289)
T ss_dssp CCGGGCCTTCEEESTTS-CCEEEEEEEEEEECCGGG------------------------T---------SCSSCBCTTC
T ss_pred cchhcCCcccEEecCCC-CccceeEEEEEEEEcccc------------------------c---------cccccccCCC
Confidence 35677788999999997 566889999988774321 1 1245788999
Q ss_pred eEEEEeeccccceEEEEEe--------cc--eEEEEeeCcccccCCcEEEEEEeecCcceeec-cccc
Q psy13818 89 VLLVNIGSLSTGGRVLATK--------AD--LAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTVT 145 (207)
Q Consensus 89 ~lmlniGs~~t~g~V~~~~--------~D--la~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~~ 145 (207)
..++.+||....|+|. +. .| .+.+.|..|+|.+.|.|..| |+ .++.|| |.|.
T Consensus 612 ~p~l~igT~~vtg~I~-L~~~~~~L~~Gd~a~V~L~l~~Pi~ve~g~RFiL-Rd---~grTIG~G~V~ 674 (1289)
T 3avx_A 612 RPQFYFRTTDVTGTIE-LPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAI-RE---GGRTVGAGVVA 674 (1289)
T ss_dssp CCEEECSSCEEEEEEE-CCTTCCCBCTTCCCEEEEEEEEEEECCTTCEEEE-EE---TTEEEEEEEEE
T ss_pred ceEEEEeeeeEEEEEE-ECCCcccccCCCEEEEEEEECceEEEccCCEEEE-Ee---CCeEEEEEEEe
Confidence 9999999999999997 42 23 56778899999999999887 55 468998 8776
No 45
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.69 E-value=0.024 Score=42.78 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=37.1
Q ss_pred eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHhhh
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFV 206 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~l 206 (207)
+|+..+. ..+..+.+..+...+++ +|+|.||+|+.+.++.+...+++++++
T Consensus 112 ~d~~~~~-~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~~~~~~~~~~ 162 (195)
T 3pqc_A 112 VDGRIPP-QDSDLMMVEWMKSLNIP-FTIVLTKMDKVKMSERAKKLEEHRKVF 162 (195)
T ss_dssp EETTSCC-CHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGGHHHHHHHHHHHH
T ss_pred ecCCCCC-CHHHHHHHHHHHHcCCC-EEEEEEChhcCChHHHHHHHHHHHHHH
Confidence 7777664 56666666677777764 888999999998776666666666553
No 46
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.28 E-value=0.042 Score=41.83 Aligned_cols=50 Identities=8% Similarity=0.160 Sum_probs=34.4
Q ss_pred eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHhh
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKF 205 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~ 205 (207)
+|+..+. ..+..+.+..++..++ .+++|+||+|+.+.++.....+++++.
T Consensus 113 ~d~~~~~-~~~~~~~~~~~~~~~~-p~i~v~nK~Dl~~~~~~~~~~~~~~~~ 162 (195)
T 1svi_A 113 VDLRHAP-SNDDVQMYEFLKYYGI-PVIVIATKADKIPKGKWDKHAKVVRQT 162 (195)
T ss_dssp EETTSCC-CHHHHHHHHHHHHTTC-CEEEEEECGGGSCGGGHHHHHHHHHHH
T ss_pred EECCCCC-CHHHHHHHHHHHHcCC-CEEEEEECcccCChHHHHHHHHHHHHH
Confidence 7777764 5555554555555565 489999999999877666666666653
No 47
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.24 E-value=0.015 Score=52.50 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=33.3
Q ss_pred eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~ 193 (207)
+|+.++. ..|+.+++..+...|+ .+|+|+||+|+++.+
T Consensus 285 iD~~~~~-~~~~~~~~~~~~~~~~-~~ilv~NK~Dl~~~~ 322 (456)
T 4dcu_A 285 LDGEEGI-IEQDKRIAGYAHEAGK-AVVIVVNKWDAVDKD 322 (456)
T ss_dssp EETTTCC-CHHHHHHHHHHHHTTC-EEEEEEECGGGSCCC
T ss_pred EeCCCCc-CHHHHHHHHHHHHcCC-CEEEEEEChhcCCCc
Confidence 8999997 8999999999988885 588999999998753
No 48
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=94.98 E-value=0.039 Score=50.30 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=71.7
Q ss_pred cccccceeeccCCCC-CCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCce
Q psy13818 11 RADRLVGQVLGAVGA-LPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEV 89 (207)
Q Consensus 11 ~~d~lvG~v~g~~g~-lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~ 89 (207)
+.|--.|.|+|.+|. -|....+++.+..+|. .-.+|+.|..
T Consensus 315 ~~~i~rG~vl~~~~~~~~~~~~~f~a~v~~l~--------------------------------------~~~~i~~g~~ 356 (458)
T 1f60_A 315 VKEIRRGNVCGDAKNDPPKGCASFNATVIVLN--------------------------------------HPGQISAGYS 356 (458)
T ss_dssp TTTSCTTCEEEETTSSCCCCCSEEEEEEEECS--------------------------------------CSCCBCTTCC
T ss_pred ccccCceeEEecCCCCCCceeeEEEEEEEEeC--------------------------------------CCCCCCCCCE
Confidence 456678999999996 7778899998887652 1257888999
Q ss_pred EEEEeeccccceEEEEEe--------------------cc--eEEEEeeCcccccCCc------EEEEEEeecCcceeec
Q psy13818 90 LLVNIGSLSTGGRVLATK--------------------AD--LAKISLTNPVCTEVNE------KIALSRRVEKHWSLIE 141 (207)
Q Consensus 90 lmlniGs~~t~g~V~~~~--------------------~D--la~i~L~~Pvc~~~G~------kiaIsR~V~gh~rlig 141 (207)
.++.+||+...|+|..+. .| .+.+.|..|+|.+.+. |..| |+- .+-+|
T Consensus 357 ~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~l-r~~---~~tv~ 432 (458)
T 1f60_A 357 PVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAV-RDM---RQTVA 432 (458)
T ss_dssp CEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTCEEEEEEEESSCCCCCCTTTCGGGSEEEE-EET---TEEEE
T ss_pred EEEEeccceEEEEEEEEEeEecCccccccccCccccCCCCEEEEEEEECCeEEEecCccCCCCCcEEE-EEC---CeEEE
Confidence 999999999999998773 34 3456778999999998 7776 452 36777
Q ss_pred -cccc
Q psy13818 142 -GTVT 145 (207)
Q Consensus 142 -g~~~ 145 (207)
|.|.
T Consensus 433 ~G~v~ 437 (458)
T 1f60_A 433 VGVIK 437 (458)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 7766
No 49
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.79 E-value=0.035 Score=49.81 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=36.7
Q ss_pred eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhh--HHHHHHHHHh
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQ--ANEQHEQIVK 204 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~--~~~~~~eI~~ 204 (207)
+|+.++. ..|+.+++..+.-.|. .+|+|+||+|+++.++ .++..+++.+
T Consensus 265 ~D~~~~~-s~~~~~~~~~~~~~~~-~iiiv~NK~Dl~~~~~~~~~~~~~~~~~ 315 (436)
T 2hjg_A 265 LDGEEGI-IEQDKRIAGYAHEAGK-AVVIVVNKWDAVDKDESTMKEFEENIRD 315 (436)
T ss_dssp EETTTCC-CHHHHHHHHHHHHTTC-EEEEEEECGGGSCCCTTHHHHHHHHHHH
T ss_pred EcCCcCC-cHHHHHHHHHHHHcCC-cEEEEEECccCCCcchHHHHHHHHHHHH
Confidence 8999997 8999988887777775 6999999999987543 2334444443
No 50
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=94.38 E-value=0.027 Score=53.35 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=68.2
Q ss_pred cccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceE
Q psy13818 11 RADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVL 90 (207)
Q Consensus 11 ~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~l 90 (207)
..|--.|.|++.++..|+...+++.+..+|. ...||..|...
T Consensus 476 ~~~i~rG~vl~~~~~~~~~~~~f~a~v~~~~--------------------------------------~~~pi~~g~~~ 517 (592)
T 3mca_A 476 VNQLRPGDILSNYENPVRRVRSFVAEIQTFD--------------------------------------IHGPILSGSTL 517 (592)
T ss_dssp GGGCCTTCEEECSSSCCEEESEEEEEEEECS--------------------------------------CSSCEETTEEE
T ss_pred ccccceEEEeccCCCCccccCeEEEEEEEEC--------------------------------------CCccCCCCCEE
Confidence 3455579999999998888888887775541 13578999999
Q ss_pred EEEeeccccceEEEEEe------------cceEEEEee---Ccccc------cCCcEEEEEEeecCcceeec-cccc
Q psy13818 91 LVNIGSLSTGGRVLATK------------ADLAKISLT---NPVCT------EVNEKIALSRRVEKHWSLIE-GTVT 145 (207)
Q Consensus 91 mlniGs~~t~g~V~~~~------------~Dla~i~L~---~Pvc~------~~G~kiaIsR~V~gh~rlig-g~~~ 145 (207)
++.+||+.+.|+| .+. .|.+.+.|. .|+|. ..|.|..| |+ .+ +-|| |.|.
T Consensus 518 ~l~~~t~~~~~~i-~l~~~~~~~~~~l~~gd~~~v~l~fl~~p~~~e~~~~~~~~~rfil-r~-~~--~Tv~~G~i~ 589 (592)
T 3mca_A 518 VLHLGRTVTSVSL-KIVTVNNKRSRHIASRKRALVRISFLDGLFPLCLAEECPALGRFIL-RR-SG--DTVAAGIVK 589 (592)
T ss_dssp EEECSSCEEEEEE-EEEESSSSCCSEECSSCEEEEEEEESSSCEEECCTTTCHHHHEEEE-ES-SS--SEEEEEEEE
T ss_pred EEEEcCcEEEEEE-EEEeccccchhccCCCCEEEEEEEECCCcEEEEeccCCCCCCeEEE-EE-CC--cEEEEEEEE
Confidence 9999999999999 764 356666554 89999 78888877 54 23 3555 6553
No 51
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=93.48 E-value=0.13 Score=42.23 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=58.2
Q ss_pred ccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCce
Q psy13818 10 CRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEV 89 (207)
Q Consensus 10 ~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~ 89 (207)
.+.|--.|.|++.+++.|+...+++.+..+|.. -.+|+.|..
T Consensus 75 ~~~di~rG~vl~~~~~~~~~~~~f~a~v~~l~~--------------------------------------~~~i~~g~~ 116 (204)
T 3e1y_E 75 EEEEILPGFILCDPNNLCHSGRTFDAQIVIIEH--------------------------------------KSIICPGYN 116 (204)
T ss_dssp SSSCCCTTCEEBCSSSCCCCCSEEEEEEECCSC--------------------------------------CSCCCTTEE
T ss_pred CHHHCccceEEECCCCCCchhEEEEEEEEEeCC--------------------------------------CCccCCCce
Confidence 345666799999999999999999999876621 136778888
Q ss_pred EEEEeeccccceEEEEEe--------------------cce--EEEEeeCcccccCC
Q psy13818 90 LLVNIGSLSTGGRVLATK--------------------ADL--AKISLTNPVCTEVN 124 (207)
Q Consensus 90 lmlniGs~~t~g~V~~~~--------------------~Dl--a~i~L~~Pvc~~~G 124 (207)
.++.+||+.+.|+|..+. .|. +.+.+..|+|.+..
T Consensus 117 ~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~a~v~l~~~~pi~~e~~ 173 (204)
T 3e1y_E 117 AVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETF 173 (204)
T ss_dssp EEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCEEEEEEEESSCCCCCCT
T ss_pred EEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCEEEEEEEECCeEEEEEc
Confidence 888888888888887652 233 35677889999875
No 52
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.30 E-value=0.2 Score=42.83 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=30.8
Q ss_pred eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCC-hhhHHHHHHHH
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVK-EGQANEQHEQI 202 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~-~~~~~~~~~eI 202 (207)
+|+.+ . .+|+++-+..+...+.+ .|+++||+|+.+ .+...+..+++
T Consensus 96 vd~~~-~-~~~~~~i~~~l~~~~~P-~ilvlNK~D~~~~~~~~~~~l~~l 142 (301)
T 1ega_A 96 VEGTR-W-TPDDEMVLNKLREGKAP-VILAVNKVDNVQEKADLLPHLQFL 142 (301)
T ss_dssp EETTC-C-CHHHHHHHHHHHSSSSC-EEEEEESTTTCCCHHHHHHHHHHH
T ss_pred EeCCC-C-CHHHHHHHHHHHhcCCC-EEEEEECcccCccHHHHHHHHHHH
Confidence 77777 4 89998776666655665 667789999987 33333333333
No 53
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.10 E-value=0.12 Score=38.77 Aligned_cols=64 Identities=16% Similarity=0.070 Sum_probs=38.8
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHH----c----CCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEI----M----KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~----l----GI~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.+|-. +... ++. +++. +|++++. .++..+.+.-+.. + .-..+|+|.||+|+.+.
T Consensus 75 ~~~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~D~~~~~-~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 75 RFHLY-TVPGQVFYNASRKLILRGV-DGIVFVADSAPNR-LRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp EEEEE-ECCSCCSCSHHHHHHTTTC-CEEEEEEECCGGG-HHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred EEEEE-eCCChHHHHHHHHHHHhcC-CEEEEEEECCcch-hhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc
Confidence 45555 8899888764 3322 332 3433 7777654 5566655543322 1 33458899999999764
No 54
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.65 E-value=0.11 Score=40.36 Aligned_cols=77 Identities=18% Similarity=0.126 Sum_probs=41.7
Q ss_pred CcEEEEEEeecCcceeeccccccccccce---e--eecCCCCCCCchHHHHHHHHH------c-C-CCeEEEEEecCCCC
Q psy13818 124 NEKIALSRRVEKHWSLIEGTVTTKVLSTR---K--RTGNESCPQPQTSEHLAAIEI------M-K-LKHIIILQNKIDLV 190 (207)
Q Consensus 124 G~kiaIsR~V~gh~rligg~~~~nMiaGa---~--V~A~eg~~~pQT~EHl~il~~------l-G-I~~iIV~vNK~DlV 190 (207)
+.++.|. +.+|+.+|-.. +.+..+.++ . +|+... ..+..+....+.. + . -..+++|.||+|+.
T Consensus 53 ~~~~~i~-Dt~G~~~~~~~-~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (214)
T 2fh5_B 53 GNSLTLI-DLPGHESLRFQ-LLDRFKSSARAVVFVVDSAAF--QREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 128 (214)
T ss_dssp CCEEEEE-ECCCCHHHHHH-HHHHHGGGEEEEEEEEETTTH--HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST
T ss_pred ccEEEEE-ECCCChhHHHH-HHHHHHhhCCEEEEEEECCCc--CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCC
Confidence 3467776 99999887620 001112222 2 666541 2334444332221 1 1 24689999999998
Q ss_pred ChhhHHHHHHHHHh
Q psy13818 191 KEGQANEQHEQIVK 204 (207)
Q Consensus 191 ~~~~~~~~~~eI~~ 204 (207)
+....++..+++.+
T Consensus 129 ~~~~~~~~~~~l~~ 142 (214)
T 2fh5_B 129 MAKSAKLIQQQLEK 142 (214)
T ss_dssp TCCCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHH
Confidence 76544445555443
No 55
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.57 E-value=0.57 Score=34.30 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=36.4
Q ss_pred CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-HHHHH--cCCCeEEEEEecCCCCChh
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-AAIEI--MKLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-~il~~--lGI~~iIV~vNK~DlV~~~ 193 (207)
+.++.+. +.+|+.++-. +.-. ++ .+++. +|+++........+.+ .+++. ..-..++++.||+|+.+..
T Consensus 50 ~~~~~~~-Dt~G~~~~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 50 NLKFQVW-DLGGLTSIRPYWRCYYSN-TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp TEEEEEE-EECCCGGGGGGGGGGCTT-CSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred CEEEEEE-ECCCChhhhHHHHHHhcc-CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence 4466766 8898877653 2222 22 23333 7776653112222222 12221 1234689999999998753
No 56
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.36 E-value=0.35 Score=36.65 Aligned_cols=69 Identities=4% Similarity=-0.018 Sum_probs=37.3
Q ss_pred CCcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHH-HHHH--c-------CCCeEEEEEecCC
Q psy13818 123 VNEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLA-AIEI--M-------KLKHIIILQNKID 188 (207)
Q Consensus 123 ~G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~-il~~--l-------GI~~iIV~vNK~D 188 (207)
.+.++.|. +.+|+.++-. +... ++. +++. +|+++.....+..+.+. +++. + .-..+|||.||+|
T Consensus 61 ~~~~~~i~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~D 138 (199)
T 4bas_A 61 GRVAFTVF-DMGGAKKFRGLWETYYDNI-DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMD 138 (199)
T ss_dssp TTEEEEEE-EECCSGGGGGGGGGGCTTC-SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTT
T ss_pred CCEEEEEE-ECCCCHhHHHHHHHHHhcC-CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcC
Confidence 34567776 9999988764 3222 322 3333 77765421112222222 2221 1 1335899999999
Q ss_pred CCChh
Q psy13818 189 LVKEG 193 (207)
Q Consensus 189 lV~~~ 193 (207)
+.+..
T Consensus 139 l~~~~ 143 (199)
T 4bas_A 139 AAGAK 143 (199)
T ss_dssp STTCC
T ss_pred CCCCC
Confidence 98763
No 57
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=92.29 E-value=0.097 Score=47.77 Aligned_cols=94 Identities=19% Similarity=0.195 Sum_probs=62.7
Q ss_pred ccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCce
Q psy13818 10 CRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEV 89 (207)
Q Consensus 10 ~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~ 89 (207)
.+.|--.|.|++.++..|++..+++.+..+|.+ -.+|..|..
T Consensus 342 ~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~l~~--------------------------------------~~~~~~g~~ 383 (467)
T 1r5b_A 342 DDSDVQTGYVLTSTKNPVHATTRFIAQIAILEL--------------------------------------PSILTTGYS 383 (467)
T ss_dssp CCTTCCTTCEEECSSSCCCEEEEEEEEEEECSS--------------------------------------CCCBSSCCC
T ss_pred cHhhCCceEEEeCCCCCCccceEEEEEEEEeCC--------------------------------------CCccCCCCE
Confidence 355667899999999999999999999877632 123455555
Q ss_pred EEEEeeccccceEEEEEe-------------------cc--eEEEEeeCcccccCCc------EEEEEEeecCcceeec-
Q psy13818 90 LLVNIGSLSTGGRVLATK-------------------AD--LAKISLTNPVCTEVNE------KIALSRRVEKHWSLIE- 141 (207)
Q Consensus 90 lmlniGs~~t~g~V~~~~-------------------~D--la~i~L~~Pvc~~~G~------kiaIsR~V~gh~rlig- 141 (207)
.++.++|....++|..+. .| .+.+.|..|+|.+.+. |..| |+- + +-+|
T Consensus 384 ~~~~~~t~~~~~~~~~i~~~~d~~~~~~~~~~~~l~~g~~~~v~l~~~~p~~~~~~~~~~~~grf~l-rd~-~--~Tv~~ 459 (467)
T 1r5b_A 384 CVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTL-RDQ-G--TTVAV 459 (467)
T ss_dssp BEEESSSCCCCBEESSCCCCCCSSCCCCSSCCSBCCTTCBCCEEEEEEEEEECCCTTTCHHHHEEEE-ECS-S--SCEEE
T ss_pred EEEEEeCCEEEEEEEEEEEEecCCccccccCccccCCCCEEEEEEEECcEEEEEEcCcCCCCccEEE-EEC-C--eEEEE
Confidence 555555555555554321 12 3477889999999995 6655 553 2 5776
Q ss_pred cccc
Q psy13818 142 GTVT 145 (207)
Q Consensus 142 g~~~ 145 (207)
|.|.
T Consensus 460 G~i~ 463 (467)
T 1r5b_A 460 GKVV 463 (467)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 58
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=91.91 E-value=0.11 Score=48.69 Aligned_cols=49 Identities=18% Similarity=0.127 Sum_probs=36.2
Q ss_pred eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHH
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIV 203 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~ 203 (207)
+|++.....++..+++..++..+. .+++|+||+|+++.++..+.+.++.
T Consensus 196 vDa~~~~~~~~~~~~l~~l~~~~~-pvilVlNK~Dl~~~~el~~~~~~l~ 244 (550)
T 2qpt_A 196 FDAHKLEISDEFSEAIGALRGHED-KIRVVLNKADMVETQQLMRVYGALM 244 (550)
T ss_dssp EETTSCCCCHHHHHHHHHTTTCGG-GEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EeCCcCCCCHHHHHHHHHHHhcCC-CEEEEEECCCccCHHHHHHHHHHhh
Confidence 888773237788887777666555 4899999999999877766666554
No 59
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.86 E-value=0.074 Score=39.70 Aligned_cols=65 Identities=8% Similarity=0.033 Sum_probs=35.6
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcC--CCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMK--LKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lG--I~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.++-. +... ++. +++. +|+++.....+..+.+..+.... -..+++|.||+|+.+.
T Consensus 62 ~~~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 62 KFEIW-DTAGQERYHSLAPMYYRGA-AAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDA 132 (181)
T ss_dssp EEEEE-ECCCSGGGGGGTHHHHTTC-SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred EEEEE-eCCCChhhhhhhHHHhccC-CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 55555 8888887763 2222 222 3333 67665421123334444444333 2348999999999764
No 60
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.79 E-value=0.3 Score=36.59 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=23.5
Q ss_pred CCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818 162 QPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 162 ~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~ 193 (207)
.+|..+.+..+...+++ +++|.||+|+.+..
T Consensus 108 ~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 108 IPIDVEFYQFLRELDIP-TIVAVNKLDKIKNV 138 (190)
T ss_dssp CCHHHHHHHHHHHTTCC-EEEEEECGGGCSCH
T ss_pred cHHHHHHHHHHHhcCCc-eEEEeehHhccCcH
Confidence 56666666666666766 89999999998754
No 61
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.79 E-value=0.11 Score=44.43 Aligned_cols=37 Identities=27% Similarity=0.256 Sum_probs=28.9
Q ss_pred eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhh
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQ 194 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~ 194 (207)
+||.. |++.+|..+.++++-+..++++||+||++.+.
T Consensus 31 vDAr~----p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~ 67 (282)
T 1puj_A 31 VDARI----PMSSRNPMIEDILKNKPRIMLLNKADKADAAV 67 (282)
T ss_dssp EETTS----TTTTSCHHHHHHCSSSCEEEEEECGGGSCHHH
T ss_pred EeCCC----CCccCCHHHHHHHCCCCEEEEEECcccCCHHH
Confidence 77765 44555567778889999999999999998654
No 62
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=91.62 E-value=0.25 Score=45.08 Aligned_cols=64 Identities=17% Similarity=0.260 Sum_probs=46.3
Q ss_pred EEEEEEeecCcceeec-ccc----cccc---cccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhh
Q psy13818 126 KIALSRRVEKHWSLIE-GTV----TTKV---LSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQ 194 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~----~~nM---iaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~ 194 (207)
++.+. +.+||.++-. +.. ++.. .+++. +|+ +. ++|+.+.+..++..+++ +|+|+||+|+.+.+.
T Consensus 84 ~l~li-DTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~-~~~~~~~l~~l~~~~~p-iIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 84 PVTLV-DTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--AP-TPYEDDVVNLFKEMEIP-FVVVVNKIDVLGEKA 157 (423)
T ss_dssp EEEEE-ECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SC-CHHHHHHHHHHHHTTCC-EEEECCCCTTTTCCC
T ss_pred eEEEE-ECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CC-hHHHHHHHHHHHhcCCC-EEEEEeCcCCCCccH
Confidence 67776 9999988743 222 0112 34444 666 54 89999999999999876 889999999987653
No 63
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=91.62 E-value=0.27 Score=42.24 Aligned_cols=68 Identities=13% Similarity=0.094 Sum_probs=40.1
Q ss_pred CCcEEEEEEeecCccee--------ec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc--CCCeEEEEEecCC
Q psy13818 123 VNEKIALSRRVEKHWSL--------IE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM--KLKHIIILQNKID 188 (207)
Q Consensus 123 ~G~kiaIsR~V~gh~rl--------ig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l--GI~~iIV~vNK~D 188 (207)
.+.++.+. +.||..+. .. ..-+ ++ .+++. +|++++. .+++.+-+..++.. ++ .+|+|+||+|
T Consensus 53 ~~~~l~l~-DTpG~~~~~~~l~~~~~~~~~~~l~~-ad~il~VvD~~~~~-~~~~~~i~~~l~~~~~~~-p~ilV~NK~D 128 (301)
T 1wf3_A 53 GRRQIVFV-DTPGLHKPMDALGEFMDQEVYEALAD-VNAVVWVVDLRHPP-TPEDELVARALKPLVGKV-PILLVGNKLD 128 (301)
T ss_dssp TTEEEEEE-ECCCCCCCCSHHHHHHHHHHHHHTSS-CSEEEEEEETTSCC-CHHHHHHHHHHGGGTTTS-CEEEEEECGG
T ss_pred CCcEEEEe-cCccccchhhHHHHHHHHHHHHHHhc-CCEEEEEEECCCCC-ChHHHHHHHHHHhhcCCC-CEEEEEECcc
Confidence 34566666 88886652 21 0000 21 23333 8888875 66765554455544 44 4889999999
Q ss_pred CCChhh
Q psy13818 189 LVKEGQ 194 (207)
Q Consensus 189 lV~~~~ 194 (207)
+.+.+.
T Consensus 129 l~~~~~ 134 (301)
T 1wf3_A 129 AAKYPE 134 (301)
T ss_dssp GCSSHH
T ss_pred cCCchH
Confidence 987654
No 64
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.50 E-value=0.68 Score=34.99 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=36.6
Q ss_pred CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-HHHHH--cCCCeEEEEEecCCCCCh
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-AAIEI--MKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-~il~~--lGI~~iIV~vNK~DlV~~ 192 (207)
+.++.+. +.+|+.++-. +.-. ++. +++. +|+++.....+..+.+ .+++. ..-..+|+|.||+|+.+.
T Consensus 64 ~~~~~i~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 64 NTRFLMW-DIGGQESLRSSWNTYYTNT-EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp TEEEEEE-EESSSGGGTCGGGGGGTTC-CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CEEEEEE-ECCCCHhHHHHHHHHhccC-CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 4566665 8888877653 2222 222 3333 7776653122223322 22222 233568999999999874
No 65
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.45 E-value=1.2 Score=38.92 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=22.7
Q ss_pred eecCCCCCCCc-hHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818 154 RTGNESCPQPQ-TSEHLAAIEIMKLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 154 V~A~eg~~~pQ-T~EHl~il~~lGI~~iIV~vNK~DlV~~~ 193 (207)
+|+.++.+.+. --+.+.++...|++ .|+|+||+||++++
T Consensus 94 ~~~~~p~~~~~~i~r~L~~~~~~~~~-~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 94 FSAVQPSFSTALLDRFLVLVEANDIQ-PIICITKMDLIEDQ 133 (307)
T ss_dssp EESTTTTCCHHHHHHHHHHHHTTTCE-EEEEEECGGGCCCH
T ss_pred EeCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEECCccCchh
Confidence 56665542221 12222333445665 68899999999874
No 66
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.34 E-value=0.058 Score=40.19 Aligned_cols=65 Identities=8% Similarity=-0.060 Sum_probs=35.4
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc-----CCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM-----KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l-----GI~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++.. +... ++. +++. +|+++.....+..+.+..+... +.+.+++|.||+|+.+.
T Consensus 57 ~~~~~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~ 130 (178)
T 2hxs_A 57 TLQIW-DIGGQTIGGKMLDKYIYGA-QGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHM 130 (178)
T ss_dssp EEEEE-ECTTCCTTCTTHHHHHTTC-SEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGG
T ss_pred EEEEE-ECCCCccccchhhHHHhhC-CEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccc
Confidence 45554 8888877653 2222 332 3333 6666532111222333333332 67779999999999753
No 67
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.18 E-value=0.53 Score=35.10 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=32.7
Q ss_pred CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHH-H--cCCCeEEEEEecCCCCCh
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIE-I--MKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~-~--lGI~~iIV~vNK~DlV~~ 192 (207)
+.++.+. +.+|+.++-. +.-. ++. +++. +|+++.....+..+++.-+. . ..-..++++.||+|+.+.
T Consensus 61 ~~~~~i~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 61 NLKLNVW-DLGGQTSIRPYWRCYYADT-AAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp TEEEEEE-EEC----CCTTGGGTTTTE-EEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred CEEEEEE-ECCCCHhHHHHHHHHhccC-CEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 4566665 8898887653 2222 221 2322 77665431233333332221 1 133468999999999864
No 68
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.05 E-value=0.46 Score=34.48 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=39.7
Q ss_pred CcEEEEEEeecCcceee---c-----ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818 124 NEKIALSRRVEKHWSLI---E-----GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 124 G~kiaIsR~V~gh~rli---g-----g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~ 192 (207)
+.++.+. +.+|+.++- . +.-.-.-.+++. +|+.++. ..+..+....++..+++ ++++.||+|+.+.
T Consensus 48 ~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 48 RGRFLLV-DTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAEL-TQADYEVAEYLRRKGKP-VILVATKVDDPKH 123 (161)
T ss_dssp TEEEEEE-ECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCC-CHHHHHHHHHHHHHTCC-EEEEEECCCSGGG
T ss_pred CceEEEE-ECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcc-cHhHHHHHHHHHhcCCC-EEEEEECcccccc
Confidence 4456665 888877631 0 000001112333 7787764 55556666667666765 8999999999765
No 69
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.01 E-value=0.66 Score=35.14 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=33.9
Q ss_pred CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-HHHHH--cCCCeEEEEEecCCCCCh
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-AAIEI--MKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-~il~~--lGI~~iIV~vNK~DlV~~ 192 (207)
+.++.+. +.+|+.++-. +... ++ .+++. +|+++.....+..+.+ .+++. ..-..+|+|.||+|+.+.
T Consensus 59 ~~~~~i~-Dt~G~~~~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 59 NTRFLMW-DIGGQESLRSSWNTYYTN-TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp TEEEEEE-ECCC----CGGGHHHHTT-CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred CEEEEEE-ECCCCHhHHHHHHHHhcC-CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 4566665 8888877763 2222 33 23333 7776653122223322 22222 133568999999999864
No 70
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.73 E-value=1.9 Score=38.75 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=18.0
Q ss_pred HHHHHcCCCeEEEEEecCCCCChhh
Q psy13818 170 AAIEIMKLKHIIILQNKIDLVKEGQ 194 (207)
Q Consensus 170 ~il~~lGI~~iIV~vNK~DlV~~~~ 194 (207)
.++...|++- |+|+||+||++++.
T Consensus 154 ~~a~~~~~~~-iivlNK~DL~~~~~ 177 (358)
T 2rcn_A 154 VGCETLQVEP-LIVLNKIDLLDDEG 177 (358)
T ss_dssp HHHHHHTCEE-EEEEECGGGCCHHH
T ss_pred HHHHhcCCCE-EEEEECccCCCchh
Confidence 3445568764 89999999998753
No 71
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.67 E-value=0.54 Score=35.40 Aligned_cols=68 Identities=15% Similarity=0.026 Sum_probs=36.6
Q ss_pred CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-HHHHH--cCCCeEEEEEecCCCCChh
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-AAIEI--MKLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-~il~~--lGI~~iIV~vNK~DlV~~~ 193 (207)
+.++.+. +.+|+.++-. +.-. ++ .+++. +|+++.....+..+.+ .+++. ..-..+|+|.||+|+.+..
T Consensus 61 ~~~~~~~-Dt~G~~~~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (186)
T 1ksh_A 61 GFKLNIW-DVGGQKSLRSYWRNYFES-TDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135 (186)
T ss_dssp TEEEEEE-EECCSHHHHTTGGGGCTT-CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred CEEEEEE-ECCCCHhHHHHHHHHhcC-CCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence 4567776 9999887653 2222 22 23333 6766542112222222 22222 1235689999999998753
No 72
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.67 E-value=0.55 Score=35.69 Aligned_cols=67 Identities=9% Similarity=-0.005 Sum_probs=36.3
Q ss_pred CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHH-HHHHHHc----CCCeEEEEEecCCCCCh
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEH-LAAIEIM----KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EH-l~il~~l----GI~~iIV~vNK~DlV~~ 192 (207)
+.++.|. +.+|+.++-. +... ++. +++. +|+++.....+..+. ..+++.. .-..+|+|.||+|+.+.
T Consensus 66 ~~~~~l~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 66 SLSFTVF-DMSGQGRYRNLWEHYYKEG-QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp SCEEEEE-EECCSTTTGGGGGGGGGGC-SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred CEEEEEE-ECCCCHHHHHHHHHHHhcC-CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 4567776 8998877653 2222 222 3333 676653201222222 2333332 22468999999999865
No 73
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.59 E-value=0.41 Score=36.52 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=33.9
Q ss_pred EEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-----HHH-HHcCCCeEEEEEecCCCCCh
Q psy13818 127 IALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-----AAI-EIMKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 127 iaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-----~il-~~lGI~~iIV~vNK~DlV~~ 192 (207)
+.|. +.+|+.++-. +... ++. +++. +|+++. ++.+++ ..+ +...-..+|+|.||+|+.++
T Consensus 73 ~~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 73 LHLW-DTAGQEEYDRLRPLSYADS-DVVLLCFAVNNR----TSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp EEEE-EECCSGGGTTTGGGGCTTC-SEEEEEEETTCH----HHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCT
T ss_pred EEEE-ECCCcHHHHHHhHhhccCC-cEEEEEEECCCH----HHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 4555 8888888764 3222 332 3333 565543 444432 222 23333568999999999763
No 74
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.57 E-value=0.4 Score=37.26 Aligned_cols=70 Identities=17% Similarity=0.100 Sum_probs=38.1
Q ss_pred CcEEEEEEeecCcceeec-cccc-ccc---cccee--eecC-CCCCCCchHHHHH-HHHHc-----CCCeEEEEEecCCC
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVT-TKV---LSTRK--RTGN-ESCPQPQTSEHLA-AIEIM-----KLKHIIILQNKIDL 189 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~-~nM---iaGa~--V~A~-eg~~~pQT~EHl~-il~~l-----GI~~iIV~vNK~Dl 189 (207)
+.++.+. +.+|+.++-. +.-. ++. ..++. +|+. ......+..+++. +++.. .-..++++.||+|+
T Consensus 54 ~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 54 GSGVTLV-DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp GSSCEEE-ECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred CceEEEE-ECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 3456776 9999888753 2222 332 23333 7776 2222344444432 22221 12348999999999
Q ss_pred CChhh
Q psy13818 190 VKEGQ 194 (207)
Q Consensus 190 V~~~~ 194 (207)
.+...
T Consensus 133 ~~~~~ 137 (218)
T 1nrj_B 133 FTARP 137 (218)
T ss_dssp TTCCC
T ss_pred cccCC
Confidence 88653
No 75
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=90.47 E-value=0.26 Score=40.99 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=32.1
Q ss_pred eecC-CCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHhh
Q psy13818 154 RTGN-ESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKF 205 (207)
Q Consensus 154 V~A~-eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~ 205 (207)
|+.. .+. .++..+.+..+.. -..+|+|+||+|+.+.++.....++|.+.
T Consensus 123 i~~~~~~~-~~~d~~~l~~l~~--~~pvi~V~nK~D~~~~~e~~~~~~~i~~~ 172 (274)
T 3t5d_A 123 IAPSGHGL-KPLDIEFMKRLHE--KVNIIPLIAKADTLTPEECQQFKKQIMKE 172 (274)
T ss_dssp ECSCCSSC-CHHHHHHHHHHTT--TSCEEEEESSGGGSCHHHHHHHHHHHHHH
T ss_pred ecCCCCCC-CHHHHHHHHHHhc--cCCEEEEEeccCCCCHHHHHHHHHHHHHH
Confidence 4333 453 6666665555444 45699999999999877666555556554
No 76
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.43 E-value=0.96 Score=34.77 Aligned_cols=65 Identities=5% Similarity=0.030 Sum_probs=38.4
Q ss_pred cEEEEEEeecCcceeec--c--ccc-ccccccee--eecCCCCCCCchHHHH-HHHHH----cCCCeEEEEEecCCCCCh
Q psy13818 125 EKIALSRRVEKHWSLIE--G--TVT-TKVLSTRK--RTGNESCPQPQTSEHL-AAIEI----MKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 125 ~kiaIsR~V~gh~rlig--g--~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-~il~~----lGI~~iIV~vNK~DlV~~ 192 (207)
.++.|. +.+|+++|.. | ... ++ ..++. +|+++.. .++.+++ ..+.. ..=..+++|.||+|++++
T Consensus 69 ~~l~i~-Dt~G~~~~~~~~~~~~~~~~~-~~~~i~v~d~~~~~--~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 69 VNFQIW-DFPGQMDFFDPTFDYEMIFRG-TGALIYVIDAQDDY--MEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp CCEEEE-ECCSSCCTTCTTCCHHHHHHT-CSEEEEEEETTSCC--HHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred eEEEEE-ECCCCHHHHhhhhhccccccc-CCEEEEEEECCCch--HHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 356665 8899988763 2 122 33 24433 7777652 3454443 22232 233468899999999986
Q ss_pred h
Q psy13818 193 G 193 (207)
Q Consensus 193 ~ 193 (207)
+
T Consensus 145 ~ 145 (196)
T 3llu_A 145 D 145 (196)
T ss_dssp H
T ss_pred h
Confidence 5
No 77
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.42 E-value=0.93 Score=34.24 Aligned_cols=68 Identities=10% Similarity=0.044 Sum_probs=35.9
Q ss_pred CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHH-HHHHc--CCCeEEEEEecCCCCChh
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLA-AIEIM--KLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~-il~~l--GI~~iIV~vNK~DlV~~~ 193 (207)
+.++.+. +.+|+.++-. +.-. ++. +++. +|+++........+.+. +++.. .-..+++|.||+|+.+..
T Consensus 65 ~~~~~~~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 139 (189)
T 2x77_A 65 NISFEVW-DLGGQTGVRPYWRCYFSDT-DAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA 139 (189)
T ss_dssp TEEEEEE-EECCSSSSCCCCSSSSTTC-CEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC
T ss_pred CEEEEEE-ECCCCHhHHHHHHHHhhcC-CEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC
Confidence 4466665 8898877653 2222 222 3333 77765431122222221 22211 124589999999998753
No 78
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.37 E-value=0.12 Score=39.78 Aligned_cols=65 Identities=9% Similarity=-0.051 Sum_probs=35.7
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcC--CCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMK--LKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lG--I~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.++-. +... ++. +++. +|+++.....+..+.+..+.... -..+++|.||+|+.+.
T Consensus 73 ~~~i~-Dt~G~~~~~~~~~~~~~~~-d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 73 KFLIW-DTAGQERFHSLAPMYYRGS-AAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143 (192)
T ss_dssp EEEEE-EECCSGGGGGGTHHHHTTC-SEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred EEEEE-cCCCchhhHhhhHHhhccC-CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 56665 8899887763 2222 322 3333 66655321122233344444432 3468999999999753
No 79
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.95 E-value=0.19 Score=38.31 Aligned_cols=65 Identities=14% Similarity=0.052 Sum_probs=35.5
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc--CCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM--KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l--GI~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.++-. +... ++. +++. +|+++.....+..+.+..+... .-..+++|.||+|+.+.
T Consensus 72 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 72 KLQIW-DTAGQERYRTITTAYYRGA-MGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp EEEEE-ECCSCCSSCCSGGGGGTTC-SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred EEEEE-eCCCcHHHhhhHHHhccCC-CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 45554 8888877753 2222 222 3333 6665532122333444444443 23468999999999764
No 80
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=89.34 E-value=0.27 Score=47.31 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=36.1
Q ss_pred EEEEEEeecCcceeec-cccccccccce---e--eecCCCCCCCchHHHHH-HHHHcCCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVTTKVLSTR---K--RTGNESCPQPQTSEHLA-AIEIMKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~~nMiaGa---~--V~A~eg~~~pQT~EHl~-il~~lGI~~iIV~vNK~DlV~~ 192 (207)
.+.|+ +.||.-+.-. ...+.+.+..+ . +|++.+. .++..+.+. .+.-.+.+ +++|+||+|+.+.
T Consensus 175 ~l~Li-DTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~-s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 175 GIEIV-DSPGLNDTEARNELSLGYVNNCHAILFVMRASQPC-TLGERRYLENYIKGRGLT-VFFLVNAWDQVRE 245 (695)
T ss_dssp TEEEE-ECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTT-CHHHHHHHHHHTTTSCCC-EEEEEECGGGGGG
T ss_pred CeEEE-ECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCcc-chhHHHHHHHHHHhhCCC-EEEEEECcccccc
Confidence 47776 8888543211 01113333332 2 7777765 455554432 33334665 9999999999764
No 81
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.84 E-value=0.16 Score=37.13 Aligned_cols=65 Identities=9% Similarity=-0.032 Sum_probs=34.6
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCC--eEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLK--HIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~--~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +... ++. +++. +|+++.....+..+.+..+...+.+ -++++.||+|+.+.
T Consensus 56 ~~~~~-Dt~G~~~~~~~~~~~~~~~-~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 56 KFLIW-DTAGLERFRALAPMYYRGS-AAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp EEEEE-EECCSGGGGGGTHHHHTTC-SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred EEEEE-cCCCchhhhcccHhhCcCC-CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccc
Confidence 45554 8888877653 2111 222 3333 6666542112223334444444433 47788899999764
No 82
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.70 E-value=1.1 Score=36.30 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=39.4
Q ss_pred cCCcEEEEEEeecCcceeec--ccc----cc------cccccee--eecCCCCCCCchHHHHHHHH-HcC---CCeEEEE
Q psy13818 122 EVNEKIALSRRVEKHWSLIE--GTV----TT------KVLSTRK--RTGNESCPQPQTSEHLAAIE-IMK---LKHIIIL 183 (207)
Q Consensus 122 ~~G~kiaIsR~V~gh~rlig--g~~----~~------nMiaGa~--V~A~eg~~~pQT~EHl~il~-~lG---I~~iIV~ 183 (207)
+.|.++.|. +.||++++-+ ... .+ .-..++. +|+.. . .+|..+.+..+. .++ -...|++
T Consensus 68 ~~~~~i~ii-DTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~-~~~~~~~~~~l~~~~~~~~~~~~i~v 144 (260)
T 2xtp_A 68 WGNREIVII-DTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-Y-TSQDQQAAQRVKEIFGEDAMGHTIVL 144 (260)
T ss_dssp ETTEEEEEE-ECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-C-CHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred eCCCEEEEE-ECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-C-CHHHHHHHHHHHHHhCchhhccEEEE
Confidence 456678877 9999988653 000 00 1123333 77764 3 677766655444 333 2356666
Q ss_pred Ee-cCCCCCh
Q psy13818 184 QN-KIDLVKE 192 (207)
Q Consensus 184 vN-K~DlV~~ 192 (207)
+| |+|+.+.
T Consensus 145 v~nK~Dl~~~ 154 (260)
T 2xtp_A 145 FTHKEDLNGG 154 (260)
T ss_dssp EECGGGGTTC
T ss_pred EEcccccCCc
Confidence 76 9999864
No 83
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=88.31 E-value=1.3 Score=36.52 Aligned_cols=69 Identities=4% Similarity=-0.091 Sum_probs=36.4
Q ss_pred CCcEEEEEEeecCcceeec-cccc----cccc-----ccee--eecCCCCCCCchHHHH-HHHHHcC---CCeEEEEEec
Q psy13818 123 VNEKIALSRRVEKHWSLIE-GTVT----TKVL-----STRK--RTGNESCPQPQTSEHL-AAIEIMK---LKHIIILQNK 186 (207)
Q Consensus 123 ~G~kiaIsR~V~gh~rlig-g~~~----~nMi-----aGa~--V~A~eg~~~pQT~EHl-~il~~lG---I~~iIV~vNK 186 (207)
.|.++.|. +.||+.++-. ..-+ ++++ .++. ++.+......+..+-+ .+.+.++ .+++|+++||
T Consensus 82 ~~~~l~li-DTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK 160 (262)
T 3def_A 82 GGFTINII-DTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTH 160 (262)
T ss_dssp TTEEEEEE-ECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CCeeEEEE-ECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeC
Confidence 45577777 9999987642 1111 2222 2222 3344332122222333 3334445 3589999999
Q ss_pred CCCCCh
Q psy13818 187 IDLVKE 192 (207)
Q Consensus 187 ~DlV~~ 192 (207)
+|+.++
T Consensus 161 ~Dl~~~ 166 (262)
T 3def_A 161 AQFSPP 166 (262)
T ss_dssp TTCCCS
T ss_pred cccCCC
Confidence 999743
No 84
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.08 E-value=0.15 Score=38.19 Aligned_cols=61 Identities=13% Similarity=-0.025 Sum_probs=34.0
Q ss_pred cEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCch-HHHH-HHHHHcCCCeEEEEEecCCC
Q psy13818 125 EKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQT-SEHL-AAIEIMKLKHIIILQNKIDL 189 (207)
Q Consensus 125 ~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT-~EHl-~il~~lGI~~iIV~vNK~Dl 189 (207)
.++.|. +.+|+.++-. +.-. ++ .+++. +|++++. .-+. .+.+ .+.+..+ ..+++|+||+|+
T Consensus 93 ~~~~i~-Dt~G~~~~~~~~~~~~~~-~d~~i~v~D~~~~~-s~~~~~~~~~~i~~~~~-~piilv~NK~D~ 159 (208)
T 3clv_A 93 IKFDIW-DTAGQERYASIVPLYYRG-ATCAIVVFDISNSN-TLDRAKTWVNQLKISSN-YIIILVANKIDK 159 (208)
T ss_dssp EEEEEE-ECTTGGGCTTTHHHHHTT-CSEEEEEEETTCHH-HHHHHHHHHHHHHHHSC-CEEEEEEECTTC
T ss_pred eEEEEE-ECCCcHHHHHHHHHHhcC-CCEEEEEEECCCHH-HHHHHHHHHHHHHhhCC-CcEEEEEECCCc
Confidence 456665 8899887763 1111 22 23333 7776543 1122 2222 3344455 789999999994
No 85
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=87.88 E-value=0.15 Score=37.74 Aligned_cols=64 Identities=14% Similarity=0.062 Sum_probs=33.1
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCch-HHHHHHHHHcC--CCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQT-SEHLAAIEIMK--LKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT-~EHl~il~~lG--I~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +... ++. +++. +|+++.. ..+. .+.+..+.... -..++++.||+|+.+.
T Consensus 65 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 135 (179)
T 1z0f_A 65 KLQIW-DTAGQERFRAVTRSYYRGA-AGALMVYDITRRS-TYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135 (179)
T ss_dssp EEEEE-ECTTGGGTCHHHHHHHHTC-SEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred EEEEE-ECCCChHhhhhHHHHhccC-CEEEEEEeCcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 45554 8888877653 2222 222 3333 6766542 1122 22222233321 2358999999999754
No 86
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.80 E-value=0.37 Score=35.76 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=30.1
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHH-c-CCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEI-M-KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~-l-GI~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +.-. ++. +++. +|+++........+.+..+.. . .-..++++.||+|+.+.
T Consensus 61 ~~~~~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 61 KLQMW-DTAGQERFRSVTHAYYRDA-HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp EEEEE-ECCCC--------CCGGGC-SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred EEEEE-eCCCcHHHHHHHHHHccCC-CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 44444 7788777653 2222 332 3333 666654211112233333333 2 23468999999999864
No 87
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=87.69 E-value=0.28 Score=36.74 Aligned_cols=65 Identities=14% Similarity=0.007 Sum_probs=26.6
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc--CCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM--KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l--GI~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.++-. +... ++. +++. +|+++.....+..+.+..+... .-..+++|.||+|+.+.
T Consensus 58 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 58 KLQIW-DTAGQERFRTITTAYYRGA-MGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128 (183)
T ss_dssp EEEEE-EC---------CCTTTTTC-SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred EEEEE-cCCCChhhhhhHHHHHhcC-CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence 45554 8888877653 2222 332 3333 6665532112223333333332 12468999999999763
No 88
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=87.67 E-value=0.61 Score=35.57 Aligned_cols=67 Identities=16% Similarity=0.095 Sum_probs=35.4
Q ss_pred CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-HHHHH--cCCCeEEEEEecCCCCCh
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-AAIEI--MKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-~il~~--lGI~~iIV~vNK~DlV~~ 192 (207)
+.++.|. +.+|+.++-. +... ++. +++. +|+++.....+..+.+ .+++. ..-..+|+|.||+|+.+.
T Consensus 66 ~~~~~l~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 66 NVTIKLW-DIGGQPRFRSMWERYCRGV-SAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp TEEEEEE-EECCSHHHHTTHHHHHTTC-SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred CEEEEEE-ECCCCHhHHHHHHHHHccC-CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 4567766 8999887763 2211 222 3333 6765432112222222 22222 122358999999999865
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=87.63 E-value=0.83 Score=35.50 Aligned_cols=65 Identities=15% Similarity=0.072 Sum_probs=30.9
Q ss_pred CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHH-HHHH---cCCCeEEEEEecCCCCC
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLA-AIEI---MKLKHIIILQNKIDLVK 191 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~-il~~---lGI~~iIV~vNK~DlV~ 191 (207)
|.++.+. +.+|+.++-. |... ++. .++. +|+.+.....+..+.+. +++. -++ .+|+|.||+|+.+
T Consensus 68 ~~~l~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~NK~Dl~~ 140 (198)
T 1f6b_A 68 GMTFTTF-DLGGHIQARRVWKNYLPAI-NGIVFLVDCADHERLLESKEELDSLMTDETIANV-PILILGNKIDRPE 140 (198)
T ss_dssp TEEEEEE-EECC----CCGGGGGGGGC-SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTS-CEEEEEECTTSTT
T ss_pred CEEEEEE-ECCCcHhhHHHHHHHHhcC-CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCC-cEEEEEECCCccc
Confidence 3456665 8888877653 2222 332 3333 67665421122222222 2221 233 4899999999975
No 90
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=87.62 E-value=0.12 Score=39.83 Aligned_cols=65 Identities=6% Similarity=0.039 Sum_probs=35.8
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcC--CCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMK--LKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lG--I~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +.-. ++. +++. +|+++.....+..+.+..++... -..++||.||+|+.+.
T Consensus 76 ~l~l~-Dt~G~~~~~~~~~~~~~~~-d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 76 RLQIW-DTAGQERFNSITSAYYRSA-KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 146 (192)
T ss_dssp EEEEE-EECCSGGGHHHHHHHHHHC-SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred EEEEE-eCCCcHHHHHHHHHHhcCC-CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 45555 8888877653 2222 222 3333 67765431122233334555543 2458999999999764
No 91
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=87.43 E-value=0.91 Score=35.98 Aligned_cols=39 Identities=26% Similarity=0.235 Sum_probs=22.5
Q ss_pred eecCCCCCCCchHHHHHHHHHc----CCCeEEEEEecCCCCChh
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIM----KLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~l----GI~~iIV~vNK~DlV~~~ 193 (207)
+|+++.. .-+..+...++..+ .-..+|+|.||+|+.+.+
T Consensus 116 ~d~~~~~-s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 158 (228)
T 2qu8_A 116 IDISEQC-GLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD 158 (228)
T ss_dssp EETTCTT-SSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--
T ss_pred Eeccccc-CcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch
Confidence 7777654 33333334444433 124589999999998754
No 92
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.16 E-value=0.48 Score=35.89 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=40.8
Q ss_pred CcEEEEEEeecCcceeec-cccc-ccc---cccee--eecCCCCCCCchH----HHH-HHHHHc-----CCCeEEEEEec
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVT-TKV---LSTRK--RTGNESCPQPQTS----EHL-AAIEIM-----KLKHIIILQNK 186 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~-~nM---iaGa~--V~A~eg~~~pQT~----EHl-~il~~l-----GI~~iIV~vNK 186 (207)
+.++.+. +.+|+.++-. +.-. ++. .+++. +|+... +++. +++ .++... .-..+++|.||
T Consensus 90 ~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 165 (193)
T 2ged_A 90 GSGVTLV-DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD---PKKLTTTAEFLVDILSITESSCENGIDILIACNK 165 (193)
T ss_dssp CTTCSEE-EETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCC---HHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEC
T ss_pred CCeEEEE-ECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCC---chhHHHHHHHHHHHHhhhhhccccCCCEEEEEEc
Confidence 4456665 8888887754 2222 333 23333 676621 2332 222 222221 12348999999
Q ss_pred CCCCChhhHHHHHHHHH
Q psy13818 187 IDLVKEGQANEQHEQIV 203 (207)
Q Consensus 187 ~DlV~~~~~~~~~~eI~ 203 (207)
+|+.+....++..+++.
T Consensus 166 ~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 166 SELFTARPPSKIKDALE 182 (193)
T ss_dssp TTSTTCCCHHHHHHHHH
T ss_pred hHhcCCCCHHHHHHHHH
Confidence 99988665555555444
No 93
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=86.97 E-value=0.41 Score=37.22 Aligned_cols=64 Identities=14% Similarity=0.051 Sum_probs=32.9
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchH-HHHHHHH-HcCC-CeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTS-EHLAAIE-IMKL-KHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~-EHl~il~-~lGI-~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +... ++ .+++. +|++++. ..+.. +.+..+. ...- ..+|+|.||+|+.+.
T Consensus 62 ~~~l~-Dt~G~~~~~~~~~~~~~~-~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (218)
T 4djt_A 62 KFNVW-DTAGQEKKAVLKDVYYIG-ASGAILFFDVTSRI-TCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNR 132 (218)
T ss_dssp EEEEE-EECSGGGTSCCCHHHHTT-CSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC--
T ss_pred EEEEE-ecCCchhhchHHHHHhhc-CCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 45555 8888877653 2222 22 23333 7776543 22222 2223332 2222 468999999999875
No 94
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.55 E-value=0.24 Score=36.38 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=29.2
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc--CCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM--KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l--GI~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +... ++. +++. +|+++.....+..+.+..+... .-..++++.||+|+.+.
T Consensus 56 ~l~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 56 NLAIW-DTAGQERFHALGPIYYRDS-NGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp EEEEE-ECCCC-------CCSSTTC-SEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred EEEEE-ECCCcHhhhhhHHHHhccC-CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 34443 7788776653 2222 222 3333 6665532112222233233221 22458999999999764
No 95
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=86.46 E-value=0.99 Score=34.72 Aligned_cols=66 Identities=21% Similarity=0.123 Sum_probs=34.1
Q ss_pred CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-HHHHH--cCCCeEEEEEecCCCCC
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-AAIEI--MKLKHIIILQNKIDLVK 191 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-~il~~--lGI~~iIV~vNK~DlV~ 191 (207)
|.++.+. +.+|+.++-. +... ++. +++. +|+++.....+..+.+ .+++. ..-..+++|.||+|+.+
T Consensus 66 ~~~~~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 66 NIKFTTF-DLGGHIQARRLWKDYFPEV-NGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp TEEEEEE-ECCCSGGGTTSGGGGCTTC-CEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred CEEEEEE-ECCCCHHHHHHHHHHHhcC-CEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 3456665 8888877653 2222 322 3333 6766542111222222 22221 12345899999999976
No 96
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.11 E-value=0.86 Score=33.17 Aligned_cols=64 Identities=8% Similarity=0.029 Sum_probs=32.5
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcC--CCeEEEEEecCCCCC
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMK--LKHIIILQNKIDLVK 191 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lG--I~~iIV~vNK~DlV~ 191 (207)
++.+. +.+|+.++-. +.-. ++. +++. +|+++.....+..+.+..+.... -..++++.||+|+.+
T Consensus 53 ~~~l~-D~~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 53 KLQIW-DTAGQERFRTITTAYYRGA-MGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp EEEEE-CCTTGGGTSCCCHHHHTTE-EEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred EEEEE-eCCCChhhhhhHHHHhccC-CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCc
Confidence 44554 8888877653 2211 222 3333 66654321112223333333321 346899999999954
No 97
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=85.93 E-value=0.37 Score=36.91 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=34.7
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc--CCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM--KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l--GI~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.++-. +... ++. +++. +|+.+........+.+..+... .-..+++|.||+|+.+.
T Consensus 58 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 58 KLQIW-DTAGLERYRTITTAYYRGA-MGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp EEEEE-EECCSGGGHHHHHTTGGGC-SEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred EEEEE-ECCCchhhcchHHHhhcCC-CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 55665 8888887753 2222 222 3333 6665532111222333333332 23468999999999764
No 98
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.85 E-value=0.51 Score=33.92 Aligned_cols=64 Identities=8% Similarity=-0.051 Sum_probs=31.4
Q ss_pred EEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHH-HHHcC--CCeEEEEEecCCCCCh
Q psy13818 127 IALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAA-IEIMK--LKHIIILQNKIDLVKE 192 (207)
Q Consensus 127 iaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~i-l~~lG--I~~iIV~vNK~DlV~~ 192 (207)
+.+. +.+|+.++-. +... ++ .+++. +|+++.....+..+.+.. .+... -..++++.||+|+.+.
T Consensus 53 ~~~~-D~~G~~~~~~~~~~~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 53 LDIL-DTAGQEEYSAMRDQYMRT-GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR 123 (166)
T ss_dssp EEEE-ECCCCSSCCHHHHHHHHH-CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred EEEE-ECCCchhhhHHHHHhhcc-CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc
Confidence 4444 8888776542 1111 22 13333 665543211122232332 23222 2458999999999873
No 99
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=85.81 E-value=0.95 Score=38.52 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=35.9
Q ss_pred CcEEEEEEeecCcceee-----c-cccc-ccccccee--eecCCCCCCCchHHHHH-----HHHH---cCCCeEEEEEec
Q psy13818 124 NEKIALSRRVEKHWSLI-----E-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLA-----AIEI---MKLKHIIILQNK 186 (207)
Q Consensus 124 G~kiaIsR~V~gh~rli-----g-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~-----il~~---lGI~~iIV~vNK 186 (207)
+.++.|. +.+|+.+|. . +... ++ .+++. +|++.. ++.+++. +..+ ..=..++++.||
T Consensus 51 ~~~l~i~-Dt~G~~~~~~~~~~~~~~~~~~~-ad~vi~V~D~t~~----~s~~~l~~~~~~l~~l~~~~~~~piilv~NK 124 (307)
T 3r7w_A 51 NMTLNLW-DCGGQDVFMENYFTKQKDHIFQM-VQVLIHVFDVEST----EVLKDIEIFAKALKQLRKYSPDAKIFVLLHK 124 (307)
T ss_dssp TEEEEEE-EECCSHHHHHHHHTTTHHHHHTT-CSEEEEEEETTCS----CHHHHHHHHHHHHHHHHHHCTTCEEEEEEEC
T ss_pred ceEEEEE-ECCCcHHHhhhhhhhHHHHHhcc-CCEEEEEEECCCh----hhHHHHHHHHHHHHHHHHhCCCCeEEEEEec
Confidence 3466666 999998883 1 1111 22 13333 666554 3333331 2222 112468999999
Q ss_pred CCCCChhhH
Q psy13818 187 IDLVKEGQA 195 (207)
Q Consensus 187 ~DlV~~~~~ 195 (207)
+|+.+.+..
T Consensus 125 ~Dl~~~~~r 133 (307)
T 3r7w_A 125 MDLVQLDKR 133 (307)
T ss_dssp GGGSCHHHH
T ss_pred ccccchhhh
Confidence 999985433
No 100
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.47 E-value=0.99 Score=34.56 Aligned_cols=64 Identities=9% Similarity=0.047 Sum_probs=33.2
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc-C-CCeEEEEEecCCCCC
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM-K-LKHIIILQNKIDLVK 191 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l-G-I~~iIV~vNK~DlV~ 191 (207)
++.|. +.+|+.++-. +... ++. +++. +|+.+........+.+..+... . -..+++|.||+|+.+
T Consensus 70 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 139 (213)
T 3cph_A 70 KLQLW-DTAGQERFRTITTAYYRGA-MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139 (213)
T ss_dssp EEEEE-CCTTGGGGTCCCHHHHTTC-SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred EEEEE-eCCCcHHHHHHHHHHhccC-CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 45555 8888877653 2222 222 3333 6666532111223333333332 2 246899999999954
No 101
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=85.46 E-value=1.3 Score=36.62 Aligned_cols=70 Identities=3% Similarity=-0.120 Sum_probs=37.7
Q ss_pred CCcEEEEEEeecCcceeec-ccc----ccc-----ccccee--eecCCCCCCCchHHHH-HHHHHcCC---CeEEEEEec
Q psy13818 123 VNEKIALSRRVEKHWSLIE-GTV----TTK-----VLSTRK--RTGNESCPQPQTSEHL-AAIEIMKL---KHIIILQNK 186 (207)
Q Consensus 123 ~G~kiaIsR~V~gh~rlig-g~~----~~n-----MiaGa~--V~A~eg~~~pQT~EHl-~il~~lGI---~~iIV~vNK 186 (207)
.+.++.|. +.||+.++-. ..- .+. -..++. ++.+.....++..+-+ .+.+.+|. .++|+|+||
T Consensus 85 ~~~~l~ii-DTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK 163 (270)
T 1h65_A 85 AGFTLNII-DTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTH 163 (270)
T ss_dssp TTEEEEEE-ECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CCeEEEEE-ECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEEC
Confidence 35567776 9999876531 000 000 122322 4454432233333333 33345565 489999999
Q ss_pred CCCCChh
Q psy13818 187 IDLVKEG 193 (207)
Q Consensus 187 ~DlV~~~ 193 (207)
+|+.+++
T Consensus 164 ~Dl~~~~ 170 (270)
T 1h65_A 164 AQFSPPD 170 (270)
T ss_dssp CSCCCGG
T ss_pred cccCCcC
Confidence 9998654
No 102
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=85.44 E-value=0.26 Score=40.82 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=37.8
Q ss_pred CCcEEEEEEeecCcceeeccc----cccc-----ccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCC
Q psy13818 123 VNEKIALSRRVEKHWSLIEGT----VTTK-----VLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVK 191 (207)
Q Consensus 123 ~G~kiaIsR~V~gh~rligg~----~~~n-----MiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~ 191 (207)
.+.++.+. +.||+.+|-... +.++ -.+++. +|+..+ .+......-+.-++...+++|+||+|+.+
T Consensus 48 ~~~~~~l~-DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 48 REKEFLVV-DLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEMEVKNIILVLNKFDLLK 123 (271)
T ss_dssp TTEEEEEE-ECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHTTCCSEEEEEECHHHHH
T ss_pred CCceEEEE-eCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhcCCCCEEEEEEChhcCc
Confidence 34566665 999988876311 1111 123333 666654 23333333444456356899999999865
Q ss_pred h
Q psy13818 192 E 192 (207)
Q Consensus 192 ~ 192 (207)
.
T Consensus 124 ~ 124 (271)
T 3k53_A 124 K 124 (271)
T ss_dssp H
T ss_pred c
Confidence 3
No 103
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=84.97 E-value=0.63 Score=38.15 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=23.9
Q ss_pred eecCCCCCCCchHHHHHHHHHcC--CCeEEEEEecCCCCChh
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMK--LKHIIILQNKIDLVKEG 193 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lG--I~~iIV~vNK~DlV~~~ 193 (207)
+|++.+. ..|.. +.+++.+. =..+|+|+||+|+.+.+
T Consensus 170 ~d~~~~~-~~~~~--~~~~~~~~~~~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 170 SPANSDL-ANSDA--LKIAKEVDPQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp EESSSCG-GGCHH--HHHHHHHCTTCSSEEEEEECGGGSCTT
T ss_pred ecCCcch-hhhHH--HHHHHHhCCCCCeEEEEEEccccCCCC
Confidence 6787775 55543 23444432 13689999999998754
No 104
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=84.63 E-value=1.4 Score=33.61 Aligned_cols=64 Identities=13% Similarity=0.010 Sum_probs=33.8
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchH-H-HHHHHHHcC-----CCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTS-E-HLAAIEIMK-----LKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~-E-Hl~il~~lG-----I~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.++-. +... ++. +++. +|+++.. .-+.. + ...+..... -..++++.||+|+.+.
T Consensus 58 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (207)
T 1vg8_A 58 TMQIW-DTAGQERFQSLGVAFYRGA-DCCVLVFDVTAPN-TFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR 132 (207)
T ss_dssp EEEEE-EECSSGGGSCSCCGGGTTC-SEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred EEEEE-eCCCcHHHHHhHHHHHhCC-cEEEEEEECCCHH-HHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc
Confidence 45555 8888887764 2222 332 3333 6666542 11111 1 122333331 2358999999999853
No 105
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=84.62 E-value=0.87 Score=37.80 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=42.1
Q ss_pred EecceEEEEeeCcccccCCcEEEEEEeecCcceee--------c---cccccccc---ccee--eec-CCCCCCCchH-H
Q psy13818 106 TKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLI--------E---GTVTTKVL---STRK--RTG-NESCPQPQTS-E 167 (207)
Q Consensus 106 ~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rli--------g---g~~~~nMi---aGa~--V~A-~eg~~~pQT~-E 167 (207)
+..+...+.+..| .+.++.|. +.||..+.- . ...+...+ .++. +++ +.+. ..+.. +
T Consensus 116 ~~~~~~~~~i~~~----~~~~~~lv-DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~-~~~~~~~ 189 (315)
T 1jwy_B 116 ISAQPINLKIYSP----HVVNLTLV-DLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL-ANSDALQ 189 (315)
T ss_dssp CCCCCEEEEEEET----TSCSEEEE-ECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS-TTCSHHH
T ss_pred ccCccEEEEEecC----CCCCcEEE-ECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch-hhhHHHH
Confidence 3455556666555 45677777 888865410 0 00001111 2222 665 5564 44443 3
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818 168 HLAAIEIMKLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 168 Hl~il~~lGI~~iIV~vNK~DlV~~~ 193 (207)
-+..+...+. .+|+|+||+|+++.+
T Consensus 190 i~~~~~~~~~-~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 190 LAKEVDPEGK-RTIGVITKLDLMDKG 214 (315)
T ss_dssp HHHHHCSSCS-SEEEEEECTTSSCSS
T ss_pred HHHHhCCCCC-cEEEEEcCcccCCcc
Confidence 3333333344 588999999998754
No 106
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=84.61 E-value=0.29 Score=41.06 Aligned_cols=64 Identities=9% Similarity=0.115 Sum_probs=37.4
Q ss_pred CcEEEEEEeecCcceeec----c----cccc-----cccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCC
Q psy13818 124 NEKIALSRRVEKHWSLIE----G----TVTT-----KVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKID 188 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig----g----~~~~-----nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~D 188 (207)
+.++.+. +.||+.++-. + .+.+ +..+++. +|+... .+..+...-+.-++++ +|+|+||+|
T Consensus 49 ~~~~~li-DtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~---~~~~~~~~~l~~~~~p-~ivv~NK~D 123 (274)
T 3i8s_A 49 DHQVTLV-DLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL---ERNLYLTLQLLELGIP-CIVALNMLD 123 (274)
T ss_dssp SCEEEEE-ECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH---HHHHHHHHHHHHHTCC-EEEEEECHH
T ss_pred CCceEEE-ECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh---HHHHHHHHHHHhcCCC-EEEEEECcc
Confidence 4567665 8899888762 1 1111 2233333 776652 2334444444556775 889999999
Q ss_pred CCCh
Q psy13818 189 LVKE 192 (207)
Q Consensus 189 lV~~ 192 (207)
+.+.
T Consensus 124 l~~~ 127 (274)
T 3i8s_A 124 IAEK 127 (274)
T ss_dssp HHHH
T ss_pred chhh
Confidence 8754
No 107
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=84.53 E-value=0.46 Score=35.39 Aligned_cols=65 Identities=11% Similarity=0.005 Sum_probs=34.6
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHH-Hc--CCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIE-IM--KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~-~l--GI~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +.-. ++. +++. +|+.........++.+..+. .. .-..+++|.||+|+.+.
T Consensus 71 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (195)
T 3bc1_A 71 HLQLW-DTAGLERFRSLTTAFFRDA-MGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ 142 (195)
T ss_dssp EEEEE-EECCSGGGHHHHHHTTTTC-SEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGG
T ss_pred EEEEE-eCCCcHHHHHHHHHHHcCC-CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 56665 8899887753 2222 332 3333 67665431112233333232 22 23458999999999763
No 108
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=84.48 E-value=2.1 Score=32.77 Aligned_cols=56 Identities=11% Similarity=0.072 Sum_probs=33.4
Q ss_pred ccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHhh
Q psy13818 148 VLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKF 205 (207)
Q Consensus 148 MiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~ 205 (207)
...++. +++..+. ..+..+-...+...+++ ++++.||+|+.+..+.+...++++++
T Consensus 108 ~~~~~~~v~d~~~~~-~~~~~~~~~~~~~~~~~-~~~v~nK~D~~s~~~~~~~~~~~~~~ 165 (210)
T 1pui_A 108 SLQGLVVLMDIRHPL-KDLDQQMIEWAVDSNIA-VLVLLTKADKLASGARKAQLNMVREA 165 (210)
T ss_dssp TEEEEEEEEETTSCC-CHHHHHHHHHHHHTTCC-EEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred cccEEEEEEECCCCC-chhHHHHHHHHHHcCCC-eEEEEecccCCCchhHHHHHHHHHHH
Confidence 334444 6666654 33444444556677876 56679999999876543334555544
No 109
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=84.29 E-value=3.2 Score=30.37 Aligned_cols=61 Identities=8% Similarity=-0.091 Sum_probs=34.4
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHH-----HHHHHHcCCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEH-----LAAIEIMKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EH-----l~il~~lGI~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +... ++ .+++. +|+++. ++.++ ..+.+...-..+|+|.||+|+.+.
T Consensus 59 ~~~i~-Dt~G~~~~~~~~~~~~~~-~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 59 KLQIW-DTAGQERFRTITSTYYRG-THGVIVVYDVTSA----ESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp EEEEE-EETTGGGCSSCCGGGGTT-CSEEEEEEETTCH----HHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred EEEEE-cCCCchhhhhhHHHHhcc-CCEEEEEEECCCH----HHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 45554 8888887764 2222 22 23333 666653 33333 223333334568999999998764
No 110
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=84.18 E-value=1 Score=33.33 Aligned_cols=64 Identities=9% Similarity=0.068 Sum_probs=32.9
Q ss_pred EEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchH--HHHHHHH-HcCCCeEEEEEecCCCCChh
Q psy13818 127 IALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTS--EHLAAIE-IMKLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 127 iaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~--EHl~il~-~lGI~~iIV~vNK~DlV~~~ 193 (207)
+.+. +.+|+.++-. +... ++. +++. +|++... ..+.. +.+..++ ...-..+++|.||+|+.+..
T Consensus 55 ~~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 55 LGLW-DTAGQEDYDRLRPLSYPQT-DVSLICFSLVSPA-SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125 (186)
T ss_dssp EEEE-CCCCSGGGTTTGGGGCTTC-SEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH
T ss_pred EEEE-ECCCCHhHHHHHHHhccCC-cEEEEEEECCChh-hHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc
Confidence 4454 8888877653 2222 222 3333 6665432 11221 1222232 22234589999999997653
No 111
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.17 E-value=0.97 Score=35.05 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=33.2
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHH-----HHHHHHc-CCCeEEEEEecCCCCChh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEH-----LAAIEIM-KLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EH-----l~il~~l-GI~~iIV~vNK~DlV~~~ 193 (207)
++.|. +.+|+.++-. +... ++. +++. +|++.. ++.+. +..++.. .-..+|+|.||+|+.+.+
T Consensus 74 ~~~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 145 (207)
T 2fv8_A 74 ELALW-DTAGQEDYDRLRPLSYPDT-DVILMCFSVDSP----DSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145 (207)
T ss_dssp EEEEE-ECTTCTTCTTTGGGGCTTC-CEEEEEEETTCH----HHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCH
T ss_pred EEEEE-ECCCcHHHHHHHHhhcCCC-CEEEEEEECCCH----HHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccc
Confidence 45554 8888877653 2222 222 3333 555542 33222 2233322 234589999999998754
No 112
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=84.13 E-value=1.2 Score=33.62 Aligned_cols=14 Identities=29% Similarity=0.461 Sum_probs=12.0
Q ss_pred CeEEEEEecCCCCC
Q psy13818 178 KHIIILQNKIDLVK 191 (207)
Q Consensus 178 ~~iIV~vNK~DlV~ 191 (207)
..++++.||+|+.+
T Consensus 127 ~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 127 VPMVLVGNKCDLPT 140 (190)
T ss_dssp CCEEEEEECTTCSC
T ss_pred CeEEEEEECCcCCc
Confidence 45899999999976
No 113
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=83.94 E-value=0.37 Score=36.79 Aligned_cols=65 Identities=12% Similarity=0.001 Sum_probs=34.0
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc--CCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM--KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l--GI~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.++-. +... ++ .+++. +|+++.....+..+.+..+... .-..+++|.||+|+.+.
T Consensus 71 ~~~i~-Dt~G~~~~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 141 (191)
T 2a5j_A 71 KLQIW-DTAGQESFRSITRSYYRG-AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141 (191)
T ss_dssp EEEEE-CCTTGGGTSCCCHHHHTT-CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred EEEEE-ECCCchhhhhhHHHHhcc-CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCc
Confidence 45554 8888877653 2222 33 23333 6666532112223333333332 12358999999999753
No 114
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=83.78 E-value=1.3 Score=34.01 Aligned_cols=66 Identities=9% Similarity=0.036 Sum_probs=31.3
Q ss_pred CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcC-----CCeEEEEEecCCCCChh
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMK-----LKHIIILQNKIDLVKEG 193 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lG-----I~~iIV~vNK~DlV~~~ 193 (207)
+.++.+. +.+|+.++-. +... ++. +++. +|+++.....+..+. +.+++. -..+|+|.||+|+.+..
T Consensus 72 ~~~~~i~-Dt~G~~~~~~~~~~~~~~~-d~iilv~D~~~~~s~~~~~~~--l~~~~~~~~~~~~piilv~NK~Dl~~~~ 146 (192)
T 2b6h_A 72 NICFTVW-DVGGQDKIRPLWRHYFQNT-QGLIFVVDSNDRERVQESADE--LQKMLQEDELRDAVLLVFANKQDMPNAM 146 (192)
T ss_dssp TEEEEEE-ECC-----CTTHHHHHHTC-CEEEEEEETTCGGGHHHHHHH--HHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred CEEEEEE-ECCCCHhHHHHHHHHhccC-CEEEEEEECCCHHHHHHHHHH--HHHHhcccccCCCeEEEEEECCCCCCCC
Confidence 4467765 8899887753 2111 222 3333 676654211222222 222221 34689999999998753
No 115
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=83.76 E-value=1 Score=34.71 Aligned_cols=62 Identities=16% Similarity=0.166 Sum_probs=33.5
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHH-----HHHHHHc-CCCeEEEEEecCCCCChh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEH-----LAAIEIM-KLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EH-----l~il~~l-GI~~iIV~vNK~DlV~~~ 193 (207)
++.|. +.+|+.++-. +... ++. +++. +|++. +++.+. +..++.. .-..+++|.||+|+.+..
T Consensus 74 ~l~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 145 (201)
T 2gco_A 74 ELALW-DTAGQEDYDRLRPLSYPDT-DVILMCFSIDS----PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 145 (201)
T ss_dssp EEEEE-CCCCSGGGTTTGGGGCTTC-SEEEEEEETTC----HHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCH
T ss_pred EEEEE-ECCCchhHHHHHHHhcCCC-CEEEEEEECCC----HHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCc
Confidence 44554 8888877653 2222 222 3333 55553 233332 2333332 234589999999998754
No 116
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=83.71 E-value=2.2 Score=39.35 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=31.1
Q ss_pred eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhH
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQA 195 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~ 195 (207)
+|++++....|..+...+++.+.-..+|+|+||+|+.+....
T Consensus 320 vD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~ 361 (476)
T 3gee_A 320 LDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADA 361 (476)
T ss_dssp EETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHH
T ss_pred EECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccch
Confidence 788877523345567777887776789999999999876543
No 117
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=83.59 E-value=0.71 Score=34.80 Aligned_cols=66 Identities=11% Similarity=0.034 Sum_probs=34.4
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcC--CCeEEEEEecCCCCChh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMK--LKHIIILQNKIDLVKEG 193 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lG--I~~iIV~vNK~DlV~~~ 193 (207)
++.|. +.+|+.++-. +... ++ .+++. +|+++.....+..+.+..+.... -..+|++.||+|+.+..
T Consensus 66 ~~~i~-Dt~G~~~~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~ 137 (196)
T 3tkl_A 66 KLQIW-DTAGQERFRTITSSYYRG-AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137 (196)
T ss_dssp EEEEE-EECCSGGGCTTHHHHHTT-CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred EEEEE-ECCCcHhhhhhHHHHHhh-CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence 45554 8888877653 2211 22 23333 66665321122233333333332 23578999999998653
No 118
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=83.52 E-value=4.1 Score=34.74 Aligned_cols=39 Identities=28% Similarity=0.265 Sum_probs=24.2
Q ss_pred eecCCCCCCCch-HHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818 154 RTGNESCPQPQT-SEHLAAIEIMKLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 154 V~A~eg~~~pQT-~EHl~il~~lGI~~iIV~vNK~DlV~~~ 193 (207)
+|+++.-+.++. .+.+..++..+++ .|+|+||+||++++
T Consensus 87 ~d~~~p~~s~~~l~~~l~~~~~~~~~-~ilV~NK~DL~~~~ 126 (302)
T 2yv5_A 87 ETLKMPEFNNYLLDNMLVVYEYFKVE-PVIVFNKIDLLNEE 126 (302)
T ss_dssp ECSTTTTCCHHHHHHHHHHHHHTTCE-EEEEECCGGGCCHH
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCC-EEEEEEcccCCCcc
Confidence 666654223332 2334455556665 78999999999765
No 119
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=83.28 E-value=1.1 Score=42.67 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=48.6
Q ss_pred cccccceeeccCCCC-CCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCce
Q psy13818 11 RADRLVGQVLGAVGA-LPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEV 89 (207)
Q Consensus 11 ~~d~lvG~v~g~~g~-lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~ 89 (207)
+.|--.|.|++.+++ .|.+..+++.+..+|. .-.||+.|..
T Consensus 483 ~~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~--------------------------------------~~~~l~~g~~ 524 (611)
T 3izq_1 483 PEDIQNGDLAASVDYSSIHSAQCFVLELTTFD--------------------------------------MNRPLLPGTP 524 (611)
T ss_dssp TTSCCTTCEEBCSTTCSCCCBSCEEEEEEECS--------------------------------------CSSCBCTTEE
T ss_pred HhhCcceEEccCCCCCCCceeeEEEEEEEEEC--------------------------------------CCCCCCCCCE
Confidence 355667999999998 8888888888886651 1357899999
Q ss_pred EEEEeeccccceEEEEEe
Q psy13818 90 LLVNIGSLSTGGRVLATK 107 (207)
Q Consensus 90 lmlniGs~~t~g~V~~~~ 107 (207)
.++.+||..+.|+|..++
T Consensus 525 ~~l~~~t~~~~~~v~~l~ 542 (611)
T 3izq_1 525 FILFIGVKEQPARIKRLI 542 (611)
T ss_dssp EEEESSSCEEEEEEEEEE
T ss_pred EEEEECCeEeeEEeeeee
Confidence 999999999999999873
No 120
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=83.12 E-value=0.35 Score=35.21 Aligned_cols=65 Identities=9% Similarity=0.017 Sum_probs=33.1
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCC--eEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLK--HIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~--~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +... ++ .+++. +|+++.....+..+.+.-+.....+ .++++.||+|+.+.
T Consensus 56 ~~~~~-D~~G~~~~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 56 KFEIW-DTAGQERYHSLAPMYYRG-AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp EEEEE-EECCSGGGGGGHHHHHTT-CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred EEEEE-eCCCcHHhhhhhHHhccC-CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 55665 8888887753 2111 22 13333 6666542112233333333333222 36677799999754
No 121
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=82.92 E-value=1.3 Score=40.34 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=48.5
Q ss_pred cccccceeeccCCCC-CCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCce
Q psy13818 11 RADRLVGQVLGAVGA-LPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEV 89 (207)
Q Consensus 11 ~~d~lvG~v~g~~g~-lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~ 89 (207)
..|--.|.|+..++. .|+...+++.+..+|. .-.+|+.|..
T Consensus 349 ~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~--------------------------------------~~~~l~~g~~ 390 (483)
T 3p26_A 349 PEDIQNGDLAASVDYSSIHSAQCFVLELTTFD--------------------------------------MNRPLLPGTP 390 (483)
T ss_dssp GGGCCTTCEEECTTCCCCEECSEEEEEEEECS--------------------------------------CSSCBCTTCE
T ss_pred cccCCceEEEEcCCCCCCceeeEEEEEEEEEC--------------------------------------CCCCCCCCCE
Confidence 356667999999998 8889999998887651 1357899999
Q ss_pred EEEEeeccccceEEEEEe
Q psy13818 90 LLVNIGSLSTGGRVLATK 107 (207)
Q Consensus 90 lmlniGs~~t~g~V~~~~ 107 (207)
.++.+||..+.|+|..++
T Consensus 391 ~~l~~~t~~~~~~v~~i~ 408 (483)
T 3p26_A 391 FILFIGVKEQPARIKRLI 408 (483)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEEEeCceEEEEEEEEEE
Confidence 999999999999999873
No 122
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=82.67 E-value=0.94 Score=34.80 Aligned_cols=65 Identities=11% Similarity=0.003 Sum_probs=33.2
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc--CCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM--KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l--GI~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.++-. +... ++. +++. +|+++........+.+..+... .-..++||.||+|+.+.
T Consensus 58 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 58 KLQIW-DTAGQERFRTITSSYYRGS-HGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp EEEEE-CCTTTTTTTCCCGGGGTTC-SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred EEEEE-eCCChHHHHHHHHHhccCC-CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 45554 8888877653 2222 222 3333 6665532011112222223322 22458999999999864
No 123
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=82.44 E-value=1.6 Score=38.32 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=22.2
Q ss_pred CeEEEEEecCCCCChhhHHHHHHHHHhhh
Q psy13818 178 KHIIILQNKIDLVKEGQANEQHEQIVKFV 206 (207)
Q Consensus 178 ~~iIV~vNK~DlV~~~~~~~~~~eI~~~l 206 (207)
..+|+|+||+|+.+.++.....+++.+++
T Consensus 175 ~piIlV~NK~Dl~~~~ev~~~k~~i~~~~ 203 (361)
T 2qag_A 175 VNIVPVIAKADTLTLKERERLKKRILDEI 203 (361)
T ss_dssp SCEEEEEECCSSSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35999999999998776655556776654
No 124
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=82.04 E-value=0.32 Score=41.15 Aligned_cols=19 Identities=42% Similarity=0.571 Sum_probs=15.4
Q ss_pred CCeEEEEEecCCCCChhhH
Q psy13818 177 LKHIIILQNKIDLVKEGQA 195 (207)
Q Consensus 177 I~~iIV~vNK~DlV~~~~~ 195 (207)
-+..|+++||+||++.+..
T Consensus 46 ~k~~iivlNK~DL~~~~~~ 64 (262)
T 3cnl_A 46 RKETIILLNKVDIADEKTT 64 (262)
T ss_dssp TSEEEEEEECGGGSCHHHH
T ss_pred CCCcEEEEECccCCCHHHH
Confidence 5678899999999987543
No 125
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=81.56 E-value=0.45 Score=34.70 Aligned_cols=65 Identities=9% Similarity=0.023 Sum_probs=33.6
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc----CCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM----KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l----GI~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +... ++ .+++. +|++......+..+.+..+..+ .-..++++.||+|+.+.
T Consensus 52 ~~~~~-Dt~G~~~~~~~~~~~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~ 124 (172)
T 2erx_A 52 TLQIT-DTTGSHQFPAMQRLSISK-GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 124 (172)
T ss_dssp EEEEE-ECCSCSSCHHHHHHHHHH-CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred EEEEE-ECCCchhhHHHHHHhccc-CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc
Confidence 45555 8888877653 2222 22 23333 6665432122333333333322 12358999999999764
No 126
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=81.33 E-value=0.44 Score=37.58 Aligned_cols=65 Identities=11% Similarity=-0.014 Sum_probs=32.1
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcC--CCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMK--LKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lG--I~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.+|-. +... ++. +++. +|+++........+.+..+.... -..+|||.||+|+.+.
T Consensus 63 ~~~i~-Dt~G~~~~~~~~~~~~~~~-d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 63 KAQIW-DTAGQERYRAITSAYYRGA-VGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133 (223)
T ss_dssp EEEEE-CCTTTTTTTCCCGGGTTTC-CEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGG
T ss_pred EEEEE-ECCCccchhhhHHHHhccC-CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 45554 8888887753 2222 222 3333 55554320111222233333321 2358899999999753
No 127
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=81.27 E-value=1.9 Score=32.60 Aligned_cols=66 Identities=9% Similarity=0.029 Sum_probs=33.7
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchH-HHHH-HHHHcCCCeEEEEEecCCCCChh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTS-EHLA-AIEIMKLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~-EHl~-il~~lGI~~iIV~vNK~DlV~~~ 193 (207)
++.|. +.+|+.++-. +... ++. +++. +|++......+.. +.+. +.+...-..+++|.||+|+.+..
T Consensus 67 ~~~i~-D~~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (194)
T 2atx_A 67 LLGLY-DTAGQEDYDRLRPLSYPMT-DVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 138 (194)
T ss_dssp EEEEE-CCCCSSSSTTTGGGGCTTC-SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCH
T ss_pred EEEEE-ECCCCcchhHHHHHhcCCC-CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccc
Confidence 45554 8888877653 2222 322 3333 6665432011111 1222 22333334689999999998743
No 128
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=81.20 E-value=1.7 Score=33.83 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=34.5
Q ss_pred EEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-----HHHHHc-CCCeEEEEEecCCCCChhh
Q psy13818 127 IALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-----AAIEIM-KLKHIIILQNKIDLVKEGQ 194 (207)
Q Consensus 127 iaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-----~il~~l-GI~~iIV~vNK~DlV~~~~ 194 (207)
+.|. +.+|+.++-. +... ++. +++. +|+++. ++.+++ ..++.. .-..+|+|.||+|+.+...
T Consensus 80 l~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 151 (204)
T 4gzl_A 80 LGLW-DTAGLEDYDRLRPLSYPQT-DVFLICFSLVSP----ASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151 (204)
T ss_dssp EEEE-EECCSGGGTTTGGGGCTTC-SEEEEEEETTCH----HHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH
T ss_pred EEEE-ECCCchhhHHHHHHHhccC-CEEEEEEECCCH----HHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh
Confidence 3355 8899888763 2222 222 3333 666543 444443 233322 2345889999999987553
No 129
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=81.01 E-value=2.7 Score=37.49 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=25.5
Q ss_pred eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~ 193 (207)
+|+.++. ..|..+-...+...|. .+|+|+||+|+.+.+
T Consensus 271 ~d~~~~~-~~~~~~i~~~l~~~~~-~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 271 LDATQGI-TRQDQRMAGLMERRGR-ASVVVFNKWDLVVHR 308 (439)
T ss_dssp EETTTCC-CHHHHHHHHHHHHTTC-EEEEEEECGGGSTTG
T ss_pred EeCCCCC-CHHHHHHHHHHHHcCC-CEEEEEECccCCCch
Confidence 6787775 5554433344455564 589999999998754
No 130
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=80.98 E-value=0.57 Score=34.47 Aligned_cols=65 Identities=14% Similarity=0.062 Sum_probs=32.8
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc-C-CCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM-K-LKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l-G-I~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +.-. ++. +++. +|++......+..+.+..+... + -..+++|+||+|+.+.
T Consensus 64 ~~~~~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 64 RLQLW-DTAGQERFRSLIPSYIRDS-TVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp EEEEE-EECCSGGGGGGSHHHHHTC-SEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred EEEEE-ECCCcHHHHHHHHHHhcCC-CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 45554 8888877653 2111 221 3333 6665432112222333222222 1 2358999999999764
No 131
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=80.95 E-value=3.6 Score=35.39 Aligned_cols=70 Identities=11% Similarity=-0.002 Sum_probs=32.3
Q ss_pred CCcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchH-HHHHHHHHcC--CCeEEEEEecCCCCChhh
Q psy13818 123 VNEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTS-EHLAAIEIMK--LKHIIILQNKIDLVKEGQ 194 (207)
Q Consensus 123 ~G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~-EHl~il~~lG--I~~iIV~vNK~DlV~~~~ 194 (207)
.+.++.|. +.+|+.+|-. +... ++ .+++. +|+++........ +...+++... =..+|||.||+|+.+...
T Consensus 207 ~~~~l~i~-Dt~G~~~~~~~~~~~~~~-ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~ 283 (329)
T 3o47_A 207 KNISFTVW-DVGGQDKIRPLWRHYFQN-TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 283 (329)
T ss_dssp TTEEEEEE-ECC-----CCSHHHHHTT-EEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred CcEEEEEE-ECCCCHhHHHHHHHHhcc-CCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC
Confidence 34567776 9999888763 2111 22 23333 7776432111222 2222222221 224899999999987643
No 132
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=80.92 E-value=1.5 Score=33.25 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=35.5
Q ss_pred CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHH-HHHH--cCCCeEEEEEecCCCCChh
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLA-AIEI--MKLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~-il~~--lGI~~iIV~vNK~DlV~~~ 193 (207)
+.++.+. +.+|+.++-. |... ++ .+++. +|+++.....+..+++. +++. ..-..++++.||+|+.+..
T Consensus 59 ~~~l~i~-Dt~G~~~~~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 59 GFKLNVW-DIGGQRKIRPYWRSYFEN-TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp TEEEEEE-ECSSCGGGHHHHHHHHTT-CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred CEEEEEE-ECCCCHHHHHHHHHHhCC-CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 4466665 8888877653 2222 32 23333 66654321122222222 2222 1223589999999998754
No 133
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=80.91 E-value=1.5 Score=33.12 Aligned_cols=64 Identities=11% Similarity=-0.033 Sum_probs=30.7
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc-----CCCeEEEEEecCCCCC
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM-----KLKHIIILQNKIDLVK 191 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l-----GI~~iIV~vNK~DlV~ 191 (207)
++.|. +.+|+.++-. +... ++. +++. +|+++.....+..+.+..+... .-..+|||.||+|+.+
T Consensus 74 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 74 ELFLL-DTAGSDLYKEQISQYWNGV-YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp EEEEE-ETTTTHHHHHHHSTTCCCC-CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred EEEEE-ECCCcHHHHHHHHHHHhhC-cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 45555 8888877653 2222 332 3333 6665542112223333333321 2346899999999987
No 134
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=80.36 E-value=0.41 Score=37.28 Aligned_cols=65 Identities=8% Similarity=-0.009 Sum_probs=34.0
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc--CCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM--KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l--GI~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.++-. +... ++. +++. +|+++.....+..+.+..+... .-..+|||.||+|+.+.
T Consensus 79 ~l~i~-Dt~G~~~~~~~~~~~~~~~-d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 149 (201)
T 2hup_A 79 KLQIW-DTAGQERFRTITQSYYRSA-NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149 (201)
T ss_dssp EEEEE-CCTTCGGGHHHHHHHHTTC-SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred EEEEE-ECCCcHhHHHHHHHHHhhC-CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccc
Confidence 55555 8888887764 3222 332 4433 6665432111222233223222 22458899999999753
No 135
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=80.32 E-value=0.92 Score=34.23 Aligned_cols=65 Identities=8% Similarity=0.044 Sum_probs=33.2
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHH-HHHHcC---CCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLA-AIEIMK---LKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~-il~~lG---I~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +... ++ .+++. +|++......+..+.+. +.+..+ -..+|+|.||+|+.+.
T Consensus 57 ~~~l~-Dt~G~~~~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~ 129 (199)
T 2gf0_A 57 TLQIT-DTTGSHQFPAMQRLSISK-GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR 129 (199)
T ss_dssp EEEEE-ECCGGGSCHHHHHHHHHH-CSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC
T ss_pred EEEEE-eCCChHHhHHHHHHhhcc-CCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc
Confidence 45555 8888877653 2222 22 23333 66654210112222222 333321 2358999999999763
No 136
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=80.09 E-value=1.8 Score=31.82 Aligned_cols=65 Identities=11% Similarity=0.025 Sum_probs=27.2
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-HHHHHc-----CCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-AAIEIM-----KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-~il~~l-----GI~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +... ++. +++. +|+++.....+..+.+ .+.... .-..++++.||+|+.+.
T Consensus 59 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 133 (182)
T 1ky3_A 59 TMQVW-DTAGQERFQSLGVAFYRGA-DCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES 133 (182)
T ss_dssp EEEEE-CCC----------CCSTTC-CEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred EEEEE-ECCCChHhhhhhHHHhhcC-CEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence 44554 7777776653 2222 332 3333 6665542111112222 233332 22358899999999654
No 137
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=79.58 E-value=0.62 Score=34.83 Aligned_cols=64 Identities=13% Similarity=0.038 Sum_probs=33.2
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCch-HHHHHHHHHc--CCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQT-SEHLAAIEIM--KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT-~EHl~il~~l--GI~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +.-. ++ .+++. +|+++.. ..+. .+.+..+... .-..++++.||+|+.+.
T Consensus 60 ~~~l~-Dt~G~~~~~~~~~~~~~~-~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 60 KLQIW-DTAGQERFRSVTRSYYRG-AAGALLVYDITSRE-TYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130 (186)
T ss_dssp EEEEE-EECCSGGGHHHHHTTSTT-CSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred EEEEE-eCCCcHHHHHHHHHHHhc-CCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 45555 8888887753 2222 22 23333 6666532 1122 2222222322 12358999999999653
No 138
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=79.57 E-value=0.67 Score=35.16 Aligned_cols=65 Identities=9% Similarity=-0.054 Sum_probs=33.2
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcC--CCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMK--LKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lG--I~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.++-. +... ++. +++. +|+.......+..+.+..+.... -..+++|.||+|+.+.
T Consensus 75 ~~~i~-Dt~G~~~~~~~~~~~~~~~-d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 75 KAQIW-DTAGLERYRAITSAYYRGA-VGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp EEEEE-EESCCCTTCTTHHHHHTTC-CEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred EEEEE-eCCCchhhhhhhHHHhccC-CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 45555 8888877653 2111 222 3333 66655321112233333333221 2358999999999764
No 139
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=78.87 E-value=2.8 Score=30.82 Aligned_cols=14 Identities=43% Similarity=0.605 Sum_probs=11.7
Q ss_pred CeEEEEEecCCCCC
Q psy13818 178 KHIIILQNKIDLVK 191 (207)
Q Consensus 178 ~~iIV~vNK~DlV~ 191 (207)
..++++.||+|+.+
T Consensus 117 ~p~i~v~nK~Dl~~ 130 (177)
T 1wms_A 117 FPFVILGNKIDISE 130 (177)
T ss_dssp SCEEEEEECTTCSS
T ss_pred CcEEEEEECCcccc
Confidence 35899999999974
No 140
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=78.78 E-value=1 Score=40.51 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=25.0
Q ss_pred eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~ 192 (207)
+|+.++. .++..+-+..++-.+. .+|+|+||+|+.+.
T Consensus 110 vD~~~~~-~~~d~~l~~~l~~~~~-pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 110 VNGREGV-TAADEEVAKILYRTKK-PVVLAVNKLDNTEM 146 (456)
T ss_dssp EESSSCS-CHHHHHHHHHHTTCCS-CEEEEEECC-----
T ss_pred EeCCCCC-ChHHHHHHHHHHHcCC-CEEEEEECccchhh
Confidence 8888886 7777777777766665 48899999998754
No 141
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=78.66 E-value=2 Score=32.12 Aligned_cols=63 Identities=11% Similarity=-0.031 Sum_probs=32.1
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCch-HHHHHHH-HHc--CCCeEEEEEecCCCCC
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQT-SEHLAAI-EIM--KLKHIIILQNKIDLVK 191 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT-~EHl~il-~~l--GI~~iIV~vNK~DlV~ 191 (207)
++.|. +.+|+.++-. +... ++. +++. +|+.+.. ..+. .+.+.-+ +.. .-..+++|.||+|+.+
T Consensus 65 ~~~i~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 65 KLAIW-DTAGQERFRTLTPSYYRGA-QGVILVYDVTRRD-TFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp EEEEE-EECSSGGGCCSHHHHHTTC-CEEEEEEETTCHH-HHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred EEEEE-eCCCchhhhhhhHHHhccC-CEEEEEEECcCHH-HHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 45555 8888887763 2222 322 3333 6665542 1111 2222222 221 2346789999999954
No 142
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=78.15 E-value=6.4 Score=29.81 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=33.7
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHH------HHHHcCCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLA------AIEIMKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~------il~~lGI~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +... ++. +++. +|+++ +++.+++. +.+...-..+|+|.||+|+.+.
T Consensus 69 ~~~i~-Dt~G~~~~~~~~~~~~~~~-~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 69 RLQLC-DTAGQDEFDKLRPLCYTNT-DIFLLCFSVVS----PSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRED 139 (201)
T ss_dssp EEEEE-ECCCSTTCSSSGGGGGTTC-SEEEEEEETTC----HHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGC
T ss_pred EEEEE-ECCCCHHHHHHhHhhcCCC-cEEEEEEECCC----HHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhc
Confidence 34454 8888877653 2222 332 3333 66654 34444432 3333333458999999999753
No 143
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=77.85 E-value=5.8 Score=30.89 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=26.7
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHH--HHH----HcCCCeEEEEEecCCCCChh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLA--AIE----IMKLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~--il~----~lGI~~iIV~vNK~DlV~~~ 193 (207)
++.|. +.+|+.+|-. +... ++. +++. +|+++ +++.+++. .+. ...-..+|+|.||+|+.+..
T Consensus 83 ~l~l~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 83 HLHIW-DTAGQDDYDRLRPLFYPDA-SVLLLCFDVTS----PNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp EEEEE-EC---------------CE-EEEEEEEETTC----HHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCH
T ss_pred EEEEE-ECCCchhhhHHHHHHhccC-CEEEEEEECcC----HHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccc
Confidence 45554 7888777653 2211 221 2222 56554 34444432 222 22234589999999998754
No 144
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=77.72 E-value=1.7 Score=33.43 Aligned_cols=62 Identities=10% Similarity=0.073 Sum_probs=33.6
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHH-----HHHHc-CCCeEEEEEecCCCCChh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLA-----AIEIM-KLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~-----il~~l-GI~~iIV~vNK~DlV~~~ 193 (207)
++.|. +.+|+.+|-. +... ++. +++. +|+++ +++.+++. .++.. .=..+|||.||+|+.+..
T Consensus 58 ~~~i~-Dt~G~~~~~~~~~~~~~~~-d~~ilv~d~~~----~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 129 (212)
T 2j0v_A 58 NLGLW-DTAGQEDYSRLRPLSYRGA-DIFVLAFSLIS----KASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDK 129 (212)
T ss_dssp EEEEE-CCCCCCCCCC--CGGGTTC-SEEEEEEETTC----HHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCH
T ss_pred EEEEE-ECCCcHHHHHHHHhhccCC-CEEEEEEECCC----HHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCc
Confidence 45555 7888877653 2222 332 3333 55543 34444432 22222 223589999999997643
No 145
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=76.71 E-value=1.1 Score=37.47 Aligned_cols=61 Identities=11% Similarity=0.210 Sum_probs=33.6
Q ss_pred CcEEEEEEeecCcceeecc--------cccccc-----cccee--eecCCCCCCCchHHHHHHHH---HcCCCeEEEEEe
Q psy13818 124 NEKIALSRRVEKHWSLIEG--------TVTTKV-----LSTRK--RTGNESCPQPQTSEHLAAIE---IMKLKHIIILQN 185 (207)
Q Consensus 124 G~kiaIsR~V~gh~rligg--------~~~~nM-----iaGa~--V~A~eg~~~pQT~EHl~il~---~lGI~~iIV~vN 185 (207)
|.++.|. +.||+.++-.. .+.++. .+++. +|+.. ..+++.+.. -+++ .+|+|+|
T Consensus 47 ~~~~~lv-DtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~------~~~~~~l~~~l~~~~~-pvilv~N 118 (256)
T 3iby_A 47 EHLIEIT-DLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH------LERHLYLTSQLFELGK-PVVVALN 118 (256)
T ss_dssp TEEEEEE-ECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG------HHHHHHHHHHHTTSCS-CEEEEEE
T ss_pred CeEEEEE-eCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC------chhHHHHHHHHHHcCC-CEEEEEE
Confidence 4466666 89998887621 011222 23333 66654 122333333 3455 5899999
Q ss_pred cCCCCCh
Q psy13818 186 KIDLVKE 192 (207)
Q Consensus 186 K~DlV~~ 192 (207)
|+|+.+.
T Consensus 119 K~Dl~~~ 125 (256)
T 3iby_A 119 MMDIAEH 125 (256)
T ss_dssp CHHHHHH
T ss_pred ChhcCCc
Confidence 9998754
No 146
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=76.46 E-value=1.7 Score=33.27 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=29.2
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHH----HHHHHHcC--CCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEH----LAAIEIMK--LKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EH----l~il~~lG--I~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.++-. +... ++. +++. +|+++ +++.++ +..+.... -..+|+|.||+|+.+.
T Consensus 83 ~~~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 83 KLQIW-DTAGQERFRTITSSYYRGA-HGIIVVYDVTD----QESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp EEEEE-CCTTCTTCCCCSCC--CCC-SEEEECC-CCC----SHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred EEEEE-ECCCcHhHHHHHHHHhhcC-CEEEEEEECCC----HHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 34554 8888777653 2222 222 3333 55554 334333 22233322 2468899999999754
No 147
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=76.19 E-value=1.9 Score=38.51 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=26.3
Q ss_pred eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~ 192 (207)
+|+.++. .++..+...+++..+. .+|+|+||+|+.+.
T Consensus 90 vD~~~~~-~~~d~~~~~~l~~~~~-pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 90 VNGREGV-TAADEEVAKILYRTKK-PVVLAVNKLDNTEM 126 (436)
T ss_dssp EETTTCS-CHHHHHHHHHHTTCCS-CEEEEEECCCC---
T ss_pred EeCCCCC-CHHHHHHHHHHHHcCC-CEEEEEECccCccc
Confidence 8888886 6776666666665565 58999999999753
No 148
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=76.03 E-value=2.8 Score=32.62 Aligned_cols=64 Identities=9% Similarity=0.019 Sum_probs=36.2
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCch--HHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQT--SEHLAAIEIMKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT--~EHl~il~~lGI~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.++-. +... ++. +++. +|+++.. ..+. ..+..+.+...-..+|+|.||+|+.+.
T Consensus 65 ~~~i~-Dt~G~~~~~~~~~~~~~~~-~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 65 KFNVW-DTAGQEKFGGLRDGYYIQA-QCAIIMFDVTSRV-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134 (221)
T ss_dssp EEEEE-EECSGGGTSCCCHHHHTTC-CEEEEEEETTCHH-HHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC
T ss_pred EEEEE-eCCChHHHhHHHHHHHhcC-CEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCEEEEEECCccccc
Confidence 55555 8888887764 2222 322 3333 6666542 1121 233344444434468999999999764
No 149
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=75.98 E-value=1.5 Score=31.79 Aligned_cols=65 Identities=14% Similarity=0.068 Sum_probs=32.8
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-HHHHHc-CCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-AAIEIM-KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-~il~~l-GI~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +.-. ++. +++. +|+++.....+..+.+ .+.+.. .-..++++.||+|+.+.
T Consensus 53 ~~~~~-D~~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 53 KFEIW-DTAGQERFASLAPXYYRNA-QAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp EEEEE-EECCSGGGGGGHHHHHTTC-SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred EEEEE-ECCCChhhhhhhhhhhccC-cEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 45555 8888877653 1111 222 3333 6666532111222222 222322 12348899999999754
No 150
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=75.36 E-value=2.7 Score=33.58 Aligned_cols=38 Identities=5% Similarity=0.086 Sum_probs=21.1
Q ss_pred eecCCCCCCCchHHHHH-HHHHcCC---CeEEEEEecCCCCChh
Q psy13818 154 RTGNESCPQPQTSEHLA-AIEIMKL---KHIIILQNKIDLVKEG 193 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~-il~~lGI---~~iIV~vNK~DlV~~~ 193 (207)
++++.. .++..+.+. +.+.+|- +.+||++||+|+.+.+
T Consensus 120 ~d~~~~--~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 120 VPLGRY--TEEEHKATEKILKMFGERARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp EETTCC--SSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---
T ss_pred eeCCCC--CHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcc
Confidence 666532 344444443 3333332 4799999999998754
No 151
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=74.09 E-value=3.2 Score=35.11 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=36.5
Q ss_pred eec-CCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHhhh
Q psy13818 154 RTG-NESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFV 206 (207)
Q Consensus 154 V~A-~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~l 206 (207)
+|. .+|. .|+..+-+.-++-. ..+|+++||+|....++.....++|++.+
T Consensus 119 ldep~~gL-~~lD~~~l~~L~~~--~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l 169 (270)
T 3sop_A 119 ISPTGHSL-RPLDLEFMKHLSKV--VNIIPVIAKADTMTLEEKSEFKQRVRKEL 169 (270)
T ss_dssp ECCCSSSC-CHHHHHHHHHHHTT--SEEEEEETTGGGSCHHHHHHHHHHHHHHH
T ss_pred EecCCCcC-CHHHHHHHHHHHhc--CcEEEEEeccccCCHHHHHHHHHHHHHHH
Confidence 553 3564 77776666655554 78999999999999888777777777543
No 152
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=74.07 E-value=2.3 Score=31.48 Aligned_cols=65 Identities=8% Similarity=-0.073 Sum_probs=29.9
Q ss_pred EEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCc-hHHHHHHHHHcC--CCeEEEEEecCCCCChh
Q psy13818 127 IALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQ-TSEHLAAIEIMK--LKHIIILQNKIDLVKEG 193 (207)
Q Consensus 127 iaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQ-T~EHl~il~~lG--I~~iIV~vNK~DlV~~~ 193 (207)
+.+. +.+|+.++-. +... ++ .+++. +|+++...... ......+.+... -..++++.||+|+.+..
T Consensus 54 ~~i~-Dt~G~~~~~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 125 (189)
T 4dsu_A 54 LDIL-DTAGQEEYSAMRDQYMRT-GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRT 125 (189)
T ss_dssp EEEE-ECCCC---CTTHHHHHHH-CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCS
T ss_pred EEEE-ECCCcHHHHHHHHHHHhc-CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccc
Confidence 3344 8888877663 2221 22 23333 55554310011 122223334332 23589999999998643
No 153
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=73.42 E-value=2.1 Score=37.27 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=17.8
Q ss_pred eEEEEEecCCCCChhhHHHHHHHHHh
Q psy13818 179 HIIILQNKIDLVKEGQANEQHEQIVK 204 (207)
Q Consensus 179 ~iIV~vNK~DlV~~~~~~~~~~eI~~ 204 (207)
..|+|+||+|+.+...+....+++.+
T Consensus 219 p~ivVlNK~Dl~~~~~~~~~~~~l~~ 244 (355)
T 3p32_A 219 ADIVVVNKADGEHHKEARLAARELSA 244 (355)
T ss_dssp CSEEEEECCCGGGHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCcChhHHHHHHHHHHH
Confidence 46889999999876555444455544
No 154
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=72.75 E-value=1.8 Score=33.95 Aligned_cols=65 Identities=15% Similarity=0.046 Sum_probs=33.4
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcC--CCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMK--LKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lG--I~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.+|-. +... ++. +++. +|+++........+.+..+.... -..+|+|.||+|+.+.
T Consensus 76 ~l~l~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 76 KLQIW-DTAGQERFRSITQSYYRSA-NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp EEEEE-EECCSGGGHHHHGGGSTTC-SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred EEEEE-ECCCcHHHHHHHHHHHhcC-CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 45554 8888877753 2222 322 3333 66654320111233333333332 2357899999999753
No 155
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=72.39 E-value=1.5 Score=31.63 Aligned_cols=65 Identities=11% Similarity=0.005 Sum_probs=30.6
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHH-HHHHHHcC--CCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEH-LAAIEIMK--LKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EH-l~il~~lG--I~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +.-. ++ .+++. +|+++........+. ..+.+... -..++++.||+|+.+.
T Consensus 53 ~~~l~-D~~G~~~~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 53 QIDIL-DTAGQEDYAAIRDNYFRS-GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp EEEEE-ECCC---CHHHHHHHHHH-CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred EEEEE-ECCCcchhHHHHHHHhhc-CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccccc
Confidence 45554 8888877653 2111 22 13333 666543201111121 23344433 3468999999999764
No 156
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=71.74 E-value=0.88 Score=35.21 Aligned_cols=64 Identities=13% Similarity=0.008 Sum_probs=32.6
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCch-HHHHHHHHHc--CCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQT-SEHLAAIEIM--KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT-~EHl~il~~l--GI~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.++-. +... ++ .+++. +|+++.. ..+. .+.+.-+... .-..+++|.||+|+.+.
T Consensus 75 ~l~l~-Dt~G~~~~~~~~~~~~~~-~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 75 KLQIW-DTAGQERFRSVTRSYYRG-AAGALLVYDITSRE-TYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145 (200)
T ss_dssp EEEEE-CCTTHHHHSCCCHHHHTT-CSEEEEEEETTCHH-HHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGG
T ss_pred EEEEE-cCCCcHhHHHHHHHHhcc-CCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 45554 8888877653 2222 32 23433 6666532 1122 2222222222 12358999999999653
No 157
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=71.71 E-value=23 Score=26.37 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=32.9
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH------HHHHHcCCCeEEEEEecCCCCC
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL------AAIEIMKLKHIIILQNKIDLVK 191 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl------~il~~lGI~~iIV~vNK~DlV~ 191 (207)
++.|. +.+|+.+|-. +... ++. +++. +|++. +++.+++ .+.+...-..+|++.||+|+.+
T Consensus 56 ~~~i~-Dt~G~~~~~~~~~~~~~~~-~~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 56 ELSLW-DTSGSPYYDNVRPLSYPDS-DAVLICFDISR----PETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp EEEEE-EECCSGGGTTTGGGGCTTC-SEEEEEEETTC----HHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred EEEEE-ECCCChhhhhhHHhhcCCC-cEEEEEEECCC----HHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 45555 8888877653 2222 222 3322 56543 3444443 1223333456899999999974
No 158
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=71.42 E-value=2.3 Score=31.63 Aligned_cols=60 Identities=10% Similarity=0.041 Sum_probs=30.3
Q ss_pred eecCcceeec-cccc-ccccccee--eecCCCCC-CCchHHHHHHHHHcCC--CeEEEEEecCCCCCh
Q psy13818 132 RVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCP-QPQTSEHLAAIEIMKL--KHIIILQNKIDLVKE 192 (207)
Q Consensus 132 ~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~-~pQT~EHl~il~~lGI--~~iIV~vNK~DlV~~ 192 (207)
+.+|+.++-. +... ++ .+++. +|+++... ..-...+..+.+.... ..+|+|.||+|+.+.
T Consensus 72 Dt~G~~~~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 138 (183)
T 3kkq_A 72 DTAGQEEFSAMREQYMRT-GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 138 (183)
T ss_dssp ECCSCGGGCSSHHHHHHH-CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT
T ss_pred ECCCchhhHHHHHHHHhc-CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhc
Confidence 7788777653 2211 22 23333 66655310 1112223334443322 248999999999763
No 159
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=71.19 E-value=4.5 Score=34.87 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=44.1
Q ss_pred EecceEEEEeeCcccccCCcEEEEEEeecCcceeec-----------ccccccccccee-----eec-CCCCCCCchHHH
Q psy13818 106 TKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-----------GTVTTKVLSTRK-----RTG-NESCPQPQTSEH 168 (207)
Q Consensus 106 ~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-----------g~~~~nMiaGa~-----V~A-~eg~~~pQT~EH 168 (207)
+..+...+....| .+..+.+. +.||-.++-. ..+++..+..+- +++ +... .+.+-
T Consensus 121 ~s~~~i~l~i~~~----~~~~l~lv-DtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~---~~~~~ 192 (360)
T 3t34_A 121 ISSVPIHLSIYSP----NVVNLTLI-DLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL---ATSDA 192 (360)
T ss_dssp CCCSCEEEEEEET----TSCSEEEE-ECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCG---GGCHH
T ss_pred cccceEEEEEeCC----CCCCeEEE-ECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCc---CCHHH
Confidence 4445556665555 34467776 8888666521 001111222211 443 3332 34455
Q ss_pred HHHHHHcCC--CeEEEEEecCCCCChh
Q psy13818 169 LAAIEIMKL--KHIIILQNKIDLVKEG 193 (207)
Q Consensus 169 l~il~~lGI--~~iIV~vNK~DlV~~~ 193 (207)
+.+++.+.- ..+|+|+||+|+++.+
T Consensus 193 ~~l~~~~~~~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 193 IKISREVDPSGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp HHHHHHSCTTCTTEEEEEECGGGCCTT
T ss_pred HHHHHHhcccCCCEEEEEeCCccCCCc
Confidence 667776643 3589999999998754
No 160
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=70.97 E-value=1.6 Score=32.21 Aligned_cols=65 Identities=11% Similarity=0.014 Sum_probs=32.8
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHH-HHHHHHHcC--CCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSE-HLAAIEIMK--LKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~E-Hl~il~~lG--I~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.++-. +... ++. +++. +|+++.....+..+ ...+.+... -..+++|.||+|+.+.
T Consensus 67 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 67 QIDIL-DTAGQEDYAAIRDNYFRSG-EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp EEEEE-ECCCTTCCHHHHHHHHHHC-SEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred EEEEE-ECCCCcccHHHHHHHhccC-CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 45555 8888877653 2111 221 3333 56554310111111 123444433 3458999999999764
No 161
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=70.81 E-value=2.7 Score=31.05 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=32.2
Q ss_pred EEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHH-----HHHH-cCCCeEEEEEecCCCCChh
Q psy13818 127 IALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLA-----AIEI-MKLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 127 iaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~-----il~~-lGI~~iIV~vNK~DlV~~~ 193 (207)
+.+. +.+|+.++-. +... ++. +++. +|+++ +++.+++. .++. ..-..++++.||+|+.+..
T Consensus 58 ~~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 128 (182)
T 3bwd_D 58 LGLW-DTAGQEDYNRLRPLSYRGA-DVFILAFSLIS----KASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDK 128 (182)
T ss_dssp CEEE-CCCC-CTTTTTGGGGGTTC-SEEEEEEETTC----HHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCH
T ss_pred EEEE-ECCCChhhhhhHHhhccCC-CEEEEEEECCC----HHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCc
Confidence 4454 8888877653 2222 222 3333 66554 34443332 2222 2234589999999997654
No 162
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=70.09 E-value=4.1 Score=37.40 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=25.8
Q ss_pred eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~ 193 (207)
+|+.++. +.++..+++.+.-+.+|+|+||+|+.+..
T Consensus 311 vD~s~~~----~~~~~~i~~~l~~~piivV~NK~Dl~~~~ 346 (462)
T 3geh_A 311 IDAATGW----TTGDQEIYEQVKHRPLILVMNKIDLVEKQ 346 (462)
T ss_dssp EETTTCS----CHHHHHHHHHHTTSCEEEEEECTTSSCGG
T ss_pred eccCCCC----CHHHHHHHHhccCCcEEEEEECCCCCcch
Confidence 7776653 44445566666667899999999998754
No 163
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=69.99 E-value=3.4 Score=29.87 Aligned_cols=64 Identities=11% Similarity=0.061 Sum_probs=34.7
Q ss_pred CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH--HHHHHcC-----CCeEEEEEecCCCCCh
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL--AAIEIMK-----LKHIIILQNKIDLVKE 192 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl--~il~~lG-----I~~iIV~vNK~DlV~~ 192 (207)
+.++.+. +.+|+.++-. +... ++. +++. +|+++. ++-+++ .+..++. -..++++.||+|+.+.
T Consensus 43 ~~~~~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 43 NISFTVW-DVGGQDKIRPLWRHYFQNT-QGLIFVVDSNDR----ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp SCEEEEE-ECCCCGGGHHHHHHHTTTC-SEEEEEEETTCG----GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CEEEEEE-EcCCChhhHHHHHHHhccC-CEEEEEEECCCH----HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 4467776 8888877642 2111 222 3333 666543 222222 1222222 3468999999999875
Q ss_pred h
Q psy13818 193 G 193 (207)
Q Consensus 193 ~ 193 (207)
.
T Consensus 117 ~ 117 (164)
T 1r8s_A 117 M 117 (164)
T ss_dssp C
T ss_pred C
Confidence 3
No 164
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=68.80 E-value=2.3 Score=35.33 Aligned_cols=64 Identities=22% Similarity=0.150 Sum_probs=35.2
Q ss_pred CcEEEEEEeecCcceeec-c---ccccccc-----ccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818 124 NEKIALSRRVEKHWSLIE-G---TVTTKVL-----STRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g---~~~~nMi-----aGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~ 192 (207)
+.++.|. +.||+.+|-. + .+.++.+ +++. +|++... +...-..-+.-++++ +|+|+||+|+.+.
T Consensus 51 ~~~~~l~-DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~---~~~~~~~~l~~~~~p-vilv~NK~Dl~~~ 125 (258)
T 3a1s_A 51 GYTINLI-DLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE---QSLYLLLEILEMEKK-VILAMTAIDEAKK 125 (258)
T ss_dssp TEEEEEE-ECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH---HHHHHHHHHHTTTCC-EEEEEECHHHHHH
T ss_pred CeEEEEE-ECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh---hHHHHHHHHHhcCCC-EEEEEECcCCCCc
Confidence 4567776 9999888764 1 1223332 3333 6666431 111122222334665 8999999998653
No 165
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=68.57 E-value=1.1 Score=32.43 Aligned_cols=65 Identities=9% Similarity=0.018 Sum_probs=33.0
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCC-CCchHHHHHHHHHcC--CCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCP-QPQTSEHLAAIEIMK--LKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~-~pQT~EHl~il~~lG--I~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +... ++ .+++. +|++.... .........+.+... -..++++.||+|+.+.
T Consensus 52 ~~~l~-D~~G~~~~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 52 MLEIL-DTAGTEQFTAMRDLYMKN-GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp EEEEE-EECSSCSSTTHHHHHHHH-CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred EEEEE-ECCChHHHHHHHHHHhcc-CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccc
Confidence 45555 8888887763 2222 22 13333 55554210 111112223444332 2358999999999764
No 166
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=67.94 E-value=4.2 Score=37.60 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=24.7
Q ss_pred eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~ 192 (207)
+|++++. +.++..+++.+.-+.+|+|+||+|+.+.
T Consensus 331 vD~s~~~----s~~~~~il~~l~~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 331 LDASSPL----DEEDRKILERIKNKRYLVVINKVDVVEK 365 (482)
T ss_dssp EETTSCC----CHHHHHHHHHHTTSSEEEEEEECSSCCC
T ss_pred ecCCCCC----CHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 7776653 3445556666655679999999999754
No 167
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=67.64 E-value=2.4 Score=30.46 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=33.0
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCch-HHHHHHHHHcC--CCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQT-SEHLAAIEIMK--LKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT-~EHl~il~~lG--I~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +... ++. +++. +|+.+....... .....+.+... -..++++.||+|+.+.
T Consensus 52 ~~~l~-D~~G~~~~~~~~~~~~~~~-~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 52 VLEIL-DTAGTEQFASMRDLYIKNG-QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp EEEEE-ECCCTTCCHHHHHHHHHHC-SEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred EEEEE-ECCCchhhHHHHHHHhccC-CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc
Confidence 35555 8888777653 2212 222 3333 565543201111 12223445442 3458999999999764
No 168
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=67.42 E-value=8.2 Score=34.37 Aligned_cols=36 Identities=11% Similarity=0.198 Sum_probs=23.9
Q ss_pred eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCC
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVK 191 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~ 191 (207)
+|+.++. .++..+-...++-.+++ +|+|+||+|+.+
T Consensus 89 ~D~~~~~-~~~d~~i~~~l~~~~~p-~ilv~NK~D~~~ 124 (439)
T 1mky_A 89 VDGKRGI-TKEDESLADFLRKSTVD-TILVANKAENLR 124 (439)
T ss_dssp EETTTCC-CHHHHHHHHHHHHHTCC-EEEEEESCCSHH
T ss_pred EECCCCC-CHHHHHHHHHHHHcCCC-EEEEEeCCCCcc
Confidence 8888775 44444444445545654 889999999854
No 169
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=66.87 E-value=6.5 Score=31.34 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=15.3
Q ss_pred HHcCCCeEEEEEecCCCCChhh
Q psy13818 173 EIMKLKHIIILQNKIDLVKEGQ 194 (207)
Q Consensus 173 ~~lGI~~iIV~vNK~DlV~~~~ 194 (207)
...+++ +++++||+|+.+..+
T Consensus 168 ~~~~~p-~~iv~NK~D~~~~~~ 188 (262)
T 1yrb_A 168 LRLGAT-TIPALNKVDLLSEEE 188 (262)
T ss_dssp HHHTSC-EEEEECCGGGCCHHH
T ss_pred cccCCC-eEEEEeccccccccc
Confidence 345665 569999999987653
No 170
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=66.61 E-value=2.3 Score=30.75 Aligned_cols=65 Identities=12% Similarity=0.044 Sum_probs=32.1
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-HHHHHcCCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-AAIEIMKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-~il~~lGI~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +.-. ++ .+++. +|+++.....+..+.+ .+.+...-..++++.||+|+.+.
T Consensus 55 ~~~l~-Dt~G~~~~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 55 RLMLW-DTAGQEEFDAITKAYYRG-AQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 124 (168)
T ss_dssp EEEEE-CCTTGGGTTCCCHHHHTT-CCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGG
T ss_pred EEEEE-cCCCcHhHHHHHHHHhcC-CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcc
Confidence 45554 7788776542 1111 22 23333 6665432011222222 22233334468999999999764
No 171
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=65.93 E-value=7.4 Score=38.55 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=25.9
Q ss_pred eecCCCCCCCchHHHHHHHHHcCC--CeEEEEEecCCCCChh
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMKL--KHIIILQNKIDLVKEG 193 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lGI--~~iIV~vNK~DlV~~~ 193 (207)
+||+.+. .+|.. +.+++.+.- ..+|+|+||+|+++.+
T Consensus 195 VDAs~~~-~~~d~--l~ll~~L~~~g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 195 SPANSDL-ANSDA--LKIAKEVDPQGQRTIGVITKLDLMDEG 233 (772)
T ss_dssp EETTSCS-SSCHH--HHHHHHHCTTCSSEEEEEECTTSSCTT
T ss_pred EcCCCCc-chhHH--HHHHHHHHhcCCCEEEEEeCcccCCcc
Confidence 8888875 55543 345555543 4689999999999765
No 172
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=65.86 E-value=5.4 Score=32.67 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=32.3
Q ss_pred EEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-----H-HHHHcCCCeEEEEEecCCCCCh
Q psy13818 129 LSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-----A-AIEIMKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 129 IsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-----~-il~~lGI~~iIV~vNK~DlV~~ 192 (207)
+. +.+|+.++-. +... ++. +++. +|+++. ++.+++ . +.....-..+|+|.||+|+.+.
T Consensus 207 l~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 207 LW-DTAGLEDYDRLRPLSYPQT-DVFLICFSLVSP----ASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp EE-EECCCGGGTTTGGGGCTTC-SEEEEEEETTCH----HHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred EE-eCCCchhhhHHHHHhccCC-CEEEEEEeCCCH----HHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence 54 8888877753 2222 222 3333 666543 343332 2 2233334468999999999764
No 173
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=65.59 E-value=1.8 Score=32.22 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=32.3
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-----HHHHHcCC--CeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-----AAIEIMKL--KHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-----~il~~lGI--~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +... ++ .+++. +|+++ +++.+++ .+.+.+.- ..+|+|.||+|+.+.
T Consensus 55 ~~~l~-Dt~G~~~~~~~~~~~~~~-~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 126 (181)
T 3t5g_A 55 HLQLV-DTAGQDEYSIFPQTYSID-INGYILVYSVTS----IKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126 (181)
T ss_dssp EEEEE-ECCCCCTTCCCCGGGTTT-CSEEEEEEETTC----HHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTT
T ss_pred EEEEE-eCCCchhhhHHHHHHHhc-CCEEEEEEECCC----HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 34554 8888777643 2222 22 23333 55553 3333332 34454432 348999999999654
No 174
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=65.32 E-value=5.3 Score=34.46 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=23.4
Q ss_pred eecCCCCCCCchHHHHHHHHHcC--CCeEEEEEecCCCCChh
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMK--LKHIIILQNKIDLVKEG 193 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lG--I~~iIV~vNK~DlV~~~ 193 (207)
++++.+. ..|. -+.+++.+. =..+|+|+||+|+++.+
T Consensus 175 ~~a~~~~-~~~~--~~~i~~~~~~~~~~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 175 SPANSDL-ANSD--ALKVAKEVDPQGQRTIGVITKLDLMDEG 213 (353)
T ss_dssp EETTSCG-GGCH--HHHHHHHHCTTCTTEEEEEECGGGSCTT
T ss_pred ecCCCcc-chhH--HHHHHHHhCcCCCceEEEeccccccCcc
Confidence 6676664 4443 233555543 23589999999998754
No 175
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=64.73 E-value=19 Score=28.05 Aligned_cols=60 Identities=10% Similarity=0.099 Sum_probs=32.9
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHH-----HH-HHHHcCCCeEEEEEecCCCCC
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEH-----LA-AIEIMKLKHIIILQNKIDLVK 191 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EH-----l~-il~~lGI~~iIV~vNK~DlV~ 191 (207)
++.|. +.+|+.+|-. +... ++. +++. +|+++ +++.++ +. +.+...=..+|+|.||+|+.+
T Consensus 76 ~l~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 76 ELSLW-DTSGSPYYDNVRPLCYSDS-DAVLLCFDISR----PETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp EEEEE-EECCSGGGTTTGGGGCTTC-SEEEEEEETTC----THHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred EEEEE-ECCCCHhHHHHHHHHcCCC-eEEEEEEECcC----HHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 45554 8888877654 2222 332 3333 66654 344444 22 222222345889999999965
No 176
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=64.38 E-value=36 Score=26.37 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=33.1
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH------HHHHHcCCCeEEEEEecCCCCC
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL------AAIEIMKLKHIIILQNKIDLVK 191 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl------~il~~lGI~~iIV~vNK~DlV~ 191 (207)
++.|. +.+|+.+|-. +... ++. +++. +|++. +++.+++ .+.+...-..+|+|.||+|+.+
T Consensus 77 ~l~i~-Dt~G~~~~~~~~~~~~~~~-d~~ilv~D~~~----~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 77 ELSLW-DTSGSPYYDNVRPLSYPDS-DAVLICFDISR----PETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp EEEEE-EECCSGGGTTTGGGGCTTC-SEEEEEEETTC----HHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred EEEEE-eCCCcHhhhHHHHhhccCC-CEEEEEEECCC----HHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 45555 8888877653 2222 222 3333 56553 3444443 1223333456899999999975
No 177
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=64.26 E-value=2.6 Score=32.29 Aligned_cols=63 Identities=14% Similarity=0.014 Sum_probs=33.5
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCch-HHHHHHHHHcC--CCeEEEEEecCCCCC
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQT-SEHLAAIEIMK--LKHIIILQNKIDLVK 191 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT-~EHl~il~~lG--I~~iIV~vNK~DlV~ 191 (207)
++.|. +.+|+.++-. +... ++. +++. +|+++.. ..+. .+.+..++... -..+|||.||+|+.+
T Consensus 78 ~l~i~-Dt~G~~~~~~~~~~~~~~~-d~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 78 VLQLW-DTAGQERFRSIAKSYFRKA-DGVLLLYDVTCEK-SFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp EEEEE-ECTTCTTCHHHHHHHHHHC-SEEEEEEETTCHH-HHHTHHHHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred EEEEE-ECCCCcchhhhHHHHHhhC-CEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 45555 8888887653 2111 222 3333 6766543 2222 33333343331 235899999999963
No 178
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=63.15 E-value=4.9 Score=35.40 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=16.8
Q ss_pred HHHcCCCeEEEEEecCCCCCh
Q psy13818 172 IEIMKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 172 l~~lGI~~iIV~vNK~DlV~~ 192 (207)
.+.++-+.+|+|+||+||.+.
T Consensus 93 ~~~l~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 93 PRFAADNPILLVGNKADLLPR 113 (369)
T ss_dssp HHHCTTSCEEEEEECGGGSCT
T ss_pred HHHhCCCCEEEEEEChhcCCC
Confidence 344667789999999999875
No 179
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=63.12 E-value=5.5 Score=34.40 Aligned_cols=73 Identities=8% Similarity=-0.018 Sum_probs=35.9
Q ss_pred cCCcEEEEEEeecCcceeecccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHH
Q psy13818 122 EVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQH 199 (207)
Q Consensus 122 ~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~ 199 (207)
+.|..+.|+ +.+|.-.... ..-...+++. +++..+. ..|+... ..++++ .++|+||+|+.+...+....
T Consensus 146 ~~~~~i~li-DTpG~~~~~~--~~~~~aD~vl~Vvd~~~~~-~~~~l~~----~~~~~p-~ivv~NK~Dl~~~~~~~~~~ 216 (341)
T 2p67_A 146 AAGYDVVIV-ETVGVGQSET--EVARMVDCFISLQIAGGGD-DLQGIKK----GLMEVA-DLIVINKDDGDNHTNVAIAR 216 (341)
T ss_dssp HTTCSEEEE-EEECCTTHHH--HHHTTCSEEEEEECC-------CCCCH----HHHHHC-SEEEECCCCTTCHHHHHHHH
T ss_pred ccCCCEEEE-eCCCccchHH--HHHHhCCEEEEEEeCCccH-HHHHHHH----hhhccc-CEEEEECCCCCChHHHHHHH
Confidence 456677776 7887544321 0123334443 6665443 3343322 122444 57899999998764444333
Q ss_pred HHHH
Q psy13818 200 EQIV 203 (207)
Q Consensus 200 ~eI~ 203 (207)
++++
T Consensus 217 ~~l~ 220 (341)
T 2p67_A 217 HMYE 220 (341)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 180
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=62.49 E-value=6.8 Score=35.59 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCCChhhHHHHHHHHHhhh
Q psy13818 178 KHIIILQNKIDLVKEGQANEQHEQIVKFV 206 (207)
Q Consensus 178 ~~iIV~vNK~DlV~~~~~~~~~~eI~~~l 206 (207)
..+|+|+||+|+.+.++.....+++++++
T Consensus 168 v~iIlVinK~Dll~~~ev~~~k~~i~~~~ 196 (418)
T 2qag_C 168 VNIIPLIAKADTLTPEECQQFKKQIMKEI 196 (418)
T ss_dssp SEEEEEEESTTSSCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEcccCccHHHHHHHHHHHHHHH
Confidence 46999999999998776665556666553
No 181
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=61.83 E-value=5.2 Score=30.17 Aligned_cols=65 Identities=11% Similarity=0.005 Sum_probs=32.9
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHH-HHHHHHcC--CCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEH-LAAIEIMK--LKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EH-l~il~~lG--I~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.++-. +... ++ .+++. +|++.........+. ..+.+... -..++++.||+|+.+.
T Consensus 63 ~~~l~-Dt~G~~~~~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 63 QIDIL-DTAGQEDYAAIRDNYFRS-GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp EEEEE-ECCCTTCCHHHHHHHHHH-CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGG
T ss_pred EEEEE-cCCChhhhHHHHHHHHhh-CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccc
Confidence 45555 8888877653 2111 22 13333 555542101111121 23444442 3458999999999764
No 182
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=61.03 E-value=3.5 Score=29.90 Aligned_cols=14 Identities=50% Similarity=0.731 Sum_probs=11.8
Q ss_pred eEEEEEecCCCCCh
Q psy13818 179 HIIILQNKIDLVKE 192 (207)
Q Consensus 179 ~iIV~vNK~DlV~~ 192 (207)
.+++|.||+|+.+.
T Consensus 108 p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 108 PIILVGNKSDLVRS 121 (166)
T ss_dssp CEEEEEECTTCCSS
T ss_pred CEEEEEeccccccc
Confidence 48899999999764
No 183
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=60.68 E-value=1.8 Score=33.15 Aligned_cols=12 Identities=0% Similarity=0.218 Sum_probs=10.3
Q ss_pred eEEEEEecCCCC
Q psy13818 179 HIIILQNKIDLV 190 (207)
Q Consensus 179 ~iIV~vNK~DlV 190 (207)
-+|++.||+|+.
T Consensus 121 piilv~nK~Dl~ 132 (184)
T 3ihw_A 121 PMVLVGTQDAIS 132 (184)
T ss_dssp CEEEEEECTTCB
T ss_pred CEEEEEECcccc
Confidence 478999999995
No 184
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=59.68 E-value=6.6 Score=36.13 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=30.8
Q ss_pred HHHHHHHHcC-CCeEEEEEecCCCCChhhHHHHHHHHHhh
Q psy13818 167 EHLAAIEIMK-LKHIIILQNKIDLVKEGQANEQHEQIVKF 205 (207)
Q Consensus 167 EHl~il~~lG-I~~iIV~vNK~DlV~~~~~~~~~~eI~~~ 205 (207)
..+.+++.|. -..+|+++||+|...+++....++.|++.
T Consensus 165 ~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~ 204 (427)
T 2qag_B 165 LDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSE 204 (427)
T ss_dssp HHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHH
Confidence 3467777775 45799999999999988888888888763
No 185
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=58.87 E-value=2.4 Score=32.74 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=33.8
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHH-HHHHc------CCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLA-AIEIM------KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~-il~~l------GI~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.+|-. +... ++. +++. +|+++. ++.+.+. .+..+ .-..+|||+||+|+.+.
T Consensus 85 ~l~l~-Dt~G~~~~~~~~~~~~~~~-d~iilV~D~~~~----~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 156 (217)
T 2f7s_A 85 HLQLW-DTAGQERFRSLTTAFFRDA-MGFLLMFDLTSQ----QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ 156 (217)
T ss_dssp EEEEE-EEESHHHHHHHHHHHHTTC-CEEEEEEETTCH----HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred EEEEE-ECCCcHhHHhHHHHHhcCC-CEEEEEEECcCH----HHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence 56665 8888877653 2222 322 3333 666543 3333322 22222 23458999999999763
No 186
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=58.86 E-value=4.9 Score=29.29 Aligned_cols=14 Identities=43% Similarity=0.600 Sum_probs=12.0
Q ss_pred eEEEEEecCCCCCh
Q psy13818 179 HIIILQNKIDLVKE 192 (207)
Q Consensus 179 ~iIV~vNK~DlV~~ 192 (207)
.+|+|.||+|+.+.
T Consensus 113 piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 113 PIILVGNKADLARC 126 (175)
T ss_dssp CEEEEEECTTCTTT
T ss_pred CEEEEEEChhhccc
Confidence 48999999999764
No 187
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=58.60 E-value=7.5 Score=35.47 Aligned_cols=65 Identities=15% Similarity=0.025 Sum_probs=37.4
Q ss_pred CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcC-CCeEEEEEecCCCCChh
Q psy13818 124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMK-LKHIIILQNKIDLVKEG 193 (207)
Q Consensus 124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lG-I~~iIV~vNK~DlV~~~ 193 (207)
+.++.+. +.+|+.++-. +... ++ .+++. +|+... .+....+..+...+ -..+|||.||+|+.+..
T Consensus 97 ~~~~~i~-Dt~G~e~~~~~~~~~l~~-~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~ 166 (535)
T 3dpu_A 97 ECLFHFW-DFGGQEIMHASHQFFMTR-SSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSY 166 (535)
T ss_dssp TCEEEEE-CCCSCCTTTTTCHHHHHS-SEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTC
T ss_pred eEEEEEE-ECCcHHHHHHHHHHHccC-CcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCccccc
Confidence 4466665 8999877664 2222 22 12222 666543 23444444444444 24588999999998643
No 188
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=58.18 E-value=9.4 Score=28.06 Aligned_cols=12 Identities=0% Similarity=0.127 Sum_probs=10.5
Q ss_pred eEEEEEecCCCC
Q psy13818 179 HIIILQNKIDLV 190 (207)
Q Consensus 179 ~iIV~vNK~DlV 190 (207)
.+|+|.||+|+.
T Consensus 110 piilv~nK~Dl~ 121 (178)
T 2iwr_A 110 ALALVGTQDRIS 121 (178)
T ss_dssp EEEEEEECTTCB
T ss_pred CEEEEEECcccc
Confidence 588999999994
No 189
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=57.81 E-value=7.2 Score=33.07 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=16.3
Q ss_pred HHHHcCCCeEEEEEecCCCCChhh
Q psy13818 171 AIEIMKLKHIIILQNKIDLVKEGQ 194 (207)
Q Consensus 171 il~~lGI~~iIV~vNK~DlV~~~~ 194 (207)
.++.-++ .+|+|.||+||.+...
T Consensus 110 ~~~~~~~-piilv~NK~DL~~~~~ 132 (301)
T 1u0l_A 110 LAEKNEL-ETVMVINKMDLYDEDD 132 (301)
T ss_dssp HHHHTTC-EEEEEECCGGGCCHHH
T ss_pred HHHHCCC-CEEEEEeHHHcCCchh
Confidence 3444455 4788999999987653
No 190
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=57.70 E-value=5.5 Score=28.92 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=11.9
Q ss_pred CeEEEEEecCCCCCh
Q psy13818 178 KHIIILQNKIDLVKE 192 (207)
Q Consensus 178 ~~iIV~vNK~DlV~~ 192 (207)
..++++.||+|+.+.
T Consensus 110 ~p~ilv~nK~Dl~~~ 124 (169)
T 3q85_A 110 LPVILVGNKSDLARS 124 (169)
T ss_dssp CCEEEEEECTTCGGG
T ss_pred CCEEEEeeCcchhhc
Confidence 358899999999753
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=57.07 E-value=3.8 Score=31.78 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=19.8
Q ss_pred eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~ 192 (207)
+|+.++. . +...+. ..++++ .++++||+|+.+.
T Consensus 137 vd~~~~~-~-~~~~~~---~~~~~~-~iiv~NK~Dl~~~ 169 (221)
T 2wsm_A 137 VSVTEGD-D-VVEKHP---EIFRVA-DLIVINKVALAEA 169 (221)
T ss_dssp EEGGGCT-T-HHHHCH---HHHHTC-SEEEEECGGGHHH
T ss_pred EeCCCcc-h-hhhhhh---hhhhcC-CEEEEecccCCcc
Confidence 7777764 2 222222 334554 5678999999653
No 192
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=56.93 E-value=24 Score=31.45 Aligned_cols=68 Identities=18% Similarity=-0.005 Sum_probs=35.3
Q ss_pred CCcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCC-CchHHHHHHHHHc--CCCeEEEEEecCCCCCh
Q psy13818 123 VNEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQ-PQTSEHLAAIEIM--KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 123 ~G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~-pQT~EHl~il~~l--GI~~iIV~vNK~DlV~~ 192 (207)
.+.++.|. +.+|+.+|-. +... ++. +++. +|+.+.... ....+-..+++.. .=.-+|||.||+|+.+.
T Consensus 364 ~~~~~~l~-Dt~G~~~~~~~~~~~~~~a-d~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 364 KNVKFNVW-DVGGQDKIRPLWRHYYTGT-QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp SSCEEEEE-EECCCGGGSGGGGGGGTTC-CEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred CCEEEEEE-ECCCcHHHHHHHHHHhccC-CEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 35567776 8888877653 2222 221 3333 776654201 1111222222221 12358999999999764
No 193
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=56.61 E-value=2.6 Score=30.89 Aligned_cols=61 Identities=10% Similarity=0.048 Sum_probs=31.9
Q ss_pred EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-----HHHHHcC--CCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-----AAIEIMK--LKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-----~il~~lG--I~~iIV~vNK~DlV~~ 192 (207)
++.+. +.+|+.++-. +... ++. +++. +|+++. ++.+++ .+++... -..++++.||+|+.+.
T Consensus 58 ~~~~~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 58 RLDIL-DTAGQEEFGAMREQYMRAG-HGFLLVFAINDR----QSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 129 (181)
T ss_dssp EEEEE-ECCCTTTTSCCHHHHHHHC-SEEEEEEETTCH----HHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred EEEEE-ECCCchhhHHHHHHHHhhC-CEEEEEEeCCCH----HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 44454 8888877653 2111 221 3333 555542 232222 3334432 2358999999999764
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=56.18 E-value=9.5 Score=32.44 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=26.1
Q ss_pred CCchHHHHHHHHHcCC-CeEEEEEecCCCCChhhHHHHHHHHHhh
Q psy13818 162 QPQTSEHLAAIEIMKL-KHIIILQNKIDLVKEGQANEQHEQIVKF 205 (207)
Q Consensus 162 ~pQT~EHl~il~~lGI-~~iIV~vNK~DlV~~~~~~~~~~eI~~~ 205 (207)
.|... .+++.+.- ..+++++||.|+.+.++.....+++.++
T Consensus 142 d~~~~---~~l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~ 183 (301)
T 2qnr_A 142 KPLDV---AFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDE 183 (301)
T ss_dssp CHHHH---HHHHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHH
T ss_pred CHHHH---HHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 55553 34444432 3699999999999876554444566554
No 195
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=56.05 E-value=9.3 Score=33.63 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=22.6
Q ss_pred eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818 154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~ 193 (207)
+|+.+. .....-.+.+.++-+.+|+|+||+||.+.+
T Consensus 77 vD~~d~----~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 77 VDIFDF----NGSWLPGLHRFVGNNKVLLVGNKADLIPKS 112 (368)
T ss_dssp EETTSH----HHHCCTTHHHHSSSSCEEEEEECGGGSCTT
T ss_pred EECCCC----cccHHHHHHHHhCCCcEEEEEEChhcCCcc
Confidence 777642 222222334445667799999999998654
No 196
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=56.03 E-value=3.2 Score=31.27 Aligned_cols=65 Identities=14% Similarity=-0.046 Sum_probs=32.4
Q ss_pred EEEEEEeecCcceee-c-cccc-ccccccee--eecCCCCCCCchH-HHHHHHHHc--CCCeEEEEEecCCCCCh
Q psy13818 126 KIALSRRVEKHWSLI-E-GTVT-TKVLSTRK--RTGNESCPQPQTS-EHLAAIEIM--KLKHIIILQNKIDLVKE 192 (207)
Q Consensus 126 kiaIsR~V~gh~rli-g-g~~~-~nMiaGa~--V~A~eg~~~pQT~-EHl~il~~l--GI~~iIV~vNK~DlV~~ 192 (207)
++.|. +.+|+.++- . +... ++. +++. +|+++.....+.. ....+.+.+ .-..+|+|.||+|+.+.
T Consensus 70 ~~~l~-Dt~G~~~~~~~~~~~~~~~~-d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 70 KIQLW-DTAGQERFRKSMVQHYYRNV-HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp EEEEE-ECCCSHHHHTTTHHHHHTTC-CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred EEEEE-ECCCchhhhhhhhHHHhcCC-CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 45555 888887765 1 1111 222 3333 6665431001111 122334443 22358999999999754
No 197
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=55.65 E-value=26 Score=26.25 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=13.2
Q ss_pred CeEEEEEecCCCCChhh
Q psy13818 178 KHIIILQNKIDLVKEGQ 194 (207)
Q Consensus 178 ~~iIV~vNK~DlV~~~~ 194 (207)
..+|+|.||+|+.+...
T Consensus 113 ~piilv~nK~Dl~~~~~ 129 (184)
T 2zej_A 113 SPVILVGTHLDVSDEKQ 129 (184)
T ss_dssp CEEEEEEECGGGCCHHH
T ss_pred CcEEEEEECCCcccchh
Confidence 35788889999987654
No 198
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=55.43 E-value=19 Score=30.98 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=18.0
Q ss_pred HHHHHcCCCeEEEEEecCCCCChhhH
Q psy13818 170 AAIEIMKLKHIIILQNKIDLVKEGQA 195 (207)
Q Consensus 170 ~il~~lGI~~iIV~vNK~DlV~~~~~ 195 (207)
.+....+-..+|+|.||+|+.+....
T Consensus 273 ~i~~~~~~~piilV~NK~Dl~~~~~~ 298 (357)
T 2e87_A 273 EVHGEFKDLPFLVVINKIDVADEENI 298 (357)
T ss_dssp HHHHHTTTSCEEEEECCTTTCCHHHH
T ss_pred HHHHhcCCCCEEEEEECcccCChHHH
Confidence 34444533568999999999886543
No 199
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=55.31 E-value=8.8 Score=33.70 Aligned_cols=16 Identities=31% Similarity=0.547 Sum_probs=13.0
Q ss_pred CeEEEEEecCCCCChh
Q psy13818 178 KHIIILQNKIDLVKEG 193 (207)
Q Consensus 178 ~~iIV~vNK~DlV~~~ 193 (207)
+.+|||+||+|+.+.+
T Consensus 275 ~p~ilV~NK~Dl~~~~ 290 (342)
T 1lnz_A 275 RPQIIVANKMDMPEAA 290 (342)
T ss_dssp SCBCBEEECTTSTTHH
T ss_pred CCEEEEEECccCCCCH
Confidence 4578999999998754
No 200
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=54.51 E-value=2.9 Score=31.73 Aligned_cols=66 Identities=12% Similarity=0.035 Sum_probs=33.8
Q ss_pred cEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcC--CCeEEEEEecCCCCCh
Q psy13818 125 EKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMK--LKHIIILQNKIDLVKE 192 (207)
Q Consensus 125 ~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lG--I~~iIV~vNK~DlV~~ 192 (207)
.++.|. +.+|+.++-. +... ++. +++. +|+++.....+..+.+..+.... -..+|+|.||+|+.+.
T Consensus 72 ~~~~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 72 VKLQIW-DTAGQERYRTITTAYYRGA-MGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp EEEEEE-CHHHHHHCHHHHHHHHTTC-CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred EEEEEE-eCCChHHHHHHHHHHHccC-CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 356665 8888776653 2222 222 3333 66654321122233333333322 3358999999999654
No 201
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=50.47 E-value=5.3 Score=30.54 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=11.8
Q ss_pred eEEEEEecCCCCCh
Q psy13818 179 HIIILQNKIDLVKE 192 (207)
Q Consensus 179 ~iIV~vNK~DlV~~ 192 (207)
.+|+|.||+|+.+.
T Consensus 131 piilv~nK~Dl~~~ 144 (201)
T 3oes_A 131 PVVLVGNKADLSPE 144 (201)
T ss_dssp CEEEEEECTTCGGG
T ss_pred CEEEEEECccCccc
Confidence 48999999999754
No 202
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=50.41 E-value=9.4 Score=33.25 Aligned_cols=20 Identities=15% Similarity=0.011 Sum_probs=13.5
Q ss_pred HcCCCeEEEEEecCCCCChhh
Q psy13818 174 IMKLKHIIILQNKIDLVKEGQ 194 (207)
Q Consensus 174 ~lGI~~iIV~vNK~DlV~~~~ 194 (207)
++..+ .++++||+|+.+.+.
T Consensus 210 il~~~-~ivVlNK~Dl~~~~~ 229 (349)
T 2www_A 210 IIEMA-DLVAVTKSDGDLIVP 229 (349)
T ss_dssp -CCSC-SEEEECCCSGGGHHH
T ss_pred HHhcC-CEEEEeeecCCCchh
Confidence 45555 477789999986543
No 203
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=49.78 E-value=31 Score=30.92 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=24.7
Q ss_pred ccccceeeccCCCCCCcceEEEEEeHhhHH
Q psy13818 12 ADRLVGQVLGAVGALPKIFIELEISYHLLK 41 (207)
Q Consensus 12 ~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~ 41 (207)
.|---|.|++.++..|+...+++.+...|.
T Consensus 315 ~~i~rG~vl~~~~~~~~~~~~f~a~v~~l~ 344 (439)
T 3j2k_7 315 EEILPGFILCDPSNLCHSGRTFDVQIVIIE 344 (439)
T ss_pred hhcCCcEEecCCCCCCceeeEEEEEEEEeC
Confidence 343459999999999999999999988773
No 204
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=47.85 E-value=3.5 Score=31.37 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=11.8
Q ss_pred eEEEEEecCCCCCh
Q psy13818 179 HIIILQNKIDLVKE 192 (207)
Q Consensus 179 ~iIV~vNK~DlV~~ 192 (207)
.+|+|.||+|+.+.
T Consensus 134 piilv~NK~Dl~~~ 147 (196)
T 2atv_A 134 TLILVGNKADLDHS 147 (196)
T ss_dssp CEEEEEECGGGGGG
T ss_pred cEEEEEECcccccc
Confidence 48999999999763
No 205
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=46.74 E-value=15 Score=32.34 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=18.4
Q ss_pred HHHHHHcCC--CeEEEEEecCCCCChh
Q psy13818 169 LAAIEIMKL--KHIIILQNKIDLVKEG 193 (207)
Q Consensus 169 l~il~~lGI--~~iIV~vNK~DlV~~~ 193 (207)
..+++.++. ..+|+|.||+|+.+..
T Consensus 282 ~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 282 FEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp HHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred HHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 456666654 3589999999998754
No 206
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=46.36 E-value=15 Score=27.75 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=12.0
Q ss_pred CeEEEEEecCCCCCh
Q psy13818 178 KHIIILQNKIDLVKE 192 (207)
Q Consensus 178 ~~iIV~vNK~DlV~~ 192 (207)
..+|+|.||+|+.+.
T Consensus 128 ~piilv~nK~Dl~~~ 142 (187)
T 3c5c_A 128 IPALLLGNKLDMAQY 142 (187)
T ss_dssp CCEEEEEECGGGGGG
T ss_pred CCEEEEEECcchhhc
Confidence 348999999999653
No 207
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=46.00 E-value=7.2 Score=30.05 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=12.1
Q ss_pred CeEEEEEecCCCCCh
Q psy13818 178 KHIIILQNKIDLVKE 192 (207)
Q Consensus 178 ~~iIV~vNK~DlV~~ 192 (207)
.-+|+|.||+|+.+.
T Consensus 131 ~piilv~nK~Dl~~~ 145 (195)
T 3cbq_A 131 LPVILVGNKSDLARS 145 (195)
T ss_dssp CCEEEEEECTTCTTT
T ss_pred CCEEEEeechhcccc
Confidence 348899999999764
No 208
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=45.82 E-value=14 Score=30.09 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=13.3
Q ss_pred CeEEEEEecCCCCChhh
Q psy13818 178 KHIIILQNKIDLVKEGQ 194 (207)
Q Consensus 178 ~~iIV~vNK~DlV~~~~ 194 (207)
..+|||.||+|+.+...
T Consensus 199 ~piilV~NK~Dl~~~~~ 215 (255)
T 3c5h_A 199 KPIVVVLTKCDEGVERY 215 (255)
T ss_dssp CCEEEEEECGGGBCHHH
T ss_pred CCEEEEEEcccccccHH
Confidence 35899999999976543
No 209
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=44.29 E-value=4.1 Score=30.34 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=33.0
Q ss_pred CcEEEEEEeecCcceeecc----cccccc-----cccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818 124 NEKIALSRRVEKHWSLIEG----TVTTKV-----LSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 124 G~kiaIsR~V~gh~rligg----~~~~nM-----iaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~ 192 (207)
+.++.+. +.+|+.++-.. .+.+.. ..++. +|+... .+..+.+.-+...+++ +|++.||+|+.+.
T Consensus 53 ~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 127 (188)
T 2wjg_A 53 GEKFKVV-DLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---ERNLYLTLQLMEMGAN-LLLALNKMDLAKS 127 (188)
T ss_dssp TEEEEEE-ECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH---HHHHHHHHHHHTTTCC-EEEEEECHHHHHH
T ss_pred CcEEEEE-ECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH---HHHHHHHHHHHhcCCC-EEEEEEhhhcccc
Confidence 4456665 88888776421 111111 22222 554431 2333333334445554 7888999998643
No 210
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=43.82 E-value=4 Score=26.30 Aligned_cols=16 Identities=38% Similarity=0.945 Sum_probs=13.3
Q ss_pred CcceEEEEEeHhhHHHHH
Q psy13818 27 PKIFIELEISYHLLKRLL 44 (207)
Q Consensus 27 p~v~~~l~i~~~Ll~r~~ 44 (207)
||+ +|.+.|||||.++
T Consensus 1 PPi--SlDLTFhlLR~m~ 16 (38)
T 2l27_B 1 PPI--SLDLTFNLLREVL 16 (38)
T ss_dssp CCC--CSHHHHHHHHHHH
T ss_pred CCc--chhHHHHHHHHHH
Confidence 555 6778899999998
No 211
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=43.80 E-value=14 Score=32.84 Aligned_cols=65 Identities=18% Similarity=0.165 Sum_probs=35.8
Q ss_pred EEEEEEeecCcceeec--c--ccc-ccccccee--eecCCCCCCCchHHHHH-HHH----HcCCCeEEEEEecCCCCChh
Q psy13818 126 KIALSRRVEKHWSLIE--G--TVT-TKVLSTRK--RTGNESCPQPQTSEHLA-AIE----IMKLKHIIILQNKIDLVKEG 193 (207)
Q Consensus 126 kiaIsR~V~gh~rlig--g--~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~-il~----~lGI~~iIV~vNK~DlV~~~ 193 (207)
++.|- +.+|.+||.. | ..+ ++- .|+. +|.++. ...+.+.+. ++. ...=-.++++.||+||.+++
T Consensus 47 ~LqIW-DTAGQErf~~~~l~~~~yyr~a-~~~IlV~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~ 122 (331)
T 3r7w_B 47 DLAVM-ELPGQLNYFEPSYDSERLFKSV-GALVYVIDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSED 122 (331)
T ss_dssp CEEEE-ECCSCSSSCCCSHHHHHHHTTC-SEEEEECCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSH
T ss_pred EEEEE-ECCCchhccchhhhhhhhccCC-CEEEEEEECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchh
Confidence 57776 9999999852 2 111 332 3333 565544 234444331 121 12222478889999999865
Q ss_pred h
Q psy13818 194 Q 194 (207)
Q Consensus 194 ~ 194 (207)
+
T Consensus 123 ~ 123 (331)
T 3r7w_B 123 F 123 (331)
T ss_dssp H
T ss_pred h
Confidence 3
No 212
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=49.75 E-value=4.9 Score=30.74 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=12.4
Q ss_pred CeEEEEEecCCCCCh
Q psy13818 178 KHIIILQNKIDLVKE 192 (207)
Q Consensus 178 ~~iIV~vNK~DlV~~ 192 (207)
..+|+|.||+|+.+.
T Consensus 135 ~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 135 TPIILVGTKLDLRDD 149 (204)
Confidence 358999999999864
No 213
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=41.10 E-value=9.6 Score=29.54 Aligned_cols=17 Identities=47% Similarity=0.561 Sum_probs=12.4
Q ss_pred cCCCeEEEEEecCCCCCh
Q psy13818 175 MKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 175 lGI~~iIV~vNK~DlV~~ 192 (207)
++. ..++++||+|+.+.
T Consensus 163 ~~~-~~iiv~NK~Dl~~~ 179 (226)
T 2hf9_A 163 MKT-ADLIVINKIDLADA 179 (226)
T ss_dssp HTT-CSEEEEECGGGHHH
T ss_pred hhc-CCEEEEeccccCch
Confidence 444 46788999999753
No 214
>3p3g_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; lipid A biosynthesis, lipid A synthesis, LPXC, BAAB sandwich hydrolase; HET: 3P3 UKW; 1.65A {Escherichia coli} PDB: 3ps1_A* 3ps2_A* 3ps3_A* 3nzk_A*
Probab=37.51 E-value=38 Score=30.15 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=32.0
Q ss_pred eecCcceeeccccccccccceeeecCCCCCCCchHHHHHH-HHHcCCCeEEEEEec
Q psy13818 132 RVEKHWSLIEGTVTTKVLSTRKRTGNESCPQPQTSEHLAA-IEIMKLKHIIILQNK 186 (207)
Q Consensus 132 ~V~gh~rligg~~~~nMiaGa~V~A~eg~~~pQT~EHl~i-l~~lGI~~iIV~vNK 186 (207)
.++.+|.++ .+---+..+..+.|. .=+|.||++. +.-|||++++|-++=
T Consensus 49 ~I~A~~~~V-----~~T~l~T~L~~~~g~-~V~TVEHllAAL~g~gIDN~~Ievdg 98 (300)
T 3p3g_A 49 DFPADAKSV-----RDTMLCTCLVNEHDV-RISTVEHLNAALAGLGIDNIVIEVNA 98 (300)
T ss_dssp EEECCGGGE-----ECCSSSCEEECTTCC-EEECCHHHHHHHHHHTCCSEEEEESS
T ss_pred eEeeeHHHc-----ccccceeEeecCCCc-EEEEHHHHHHHHHhCCCceEEEEEcC
Confidence 466777777 221111113333354 7799999875 678999999998864
No 215
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=34.38 E-value=5 Score=26.10 Aligned_cols=16 Identities=38% Similarity=1.043 Sum_probs=13.4
Q ss_pred CcceEEEEEeHhhHHHHH
Q psy13818 27 PKIFIELEISYHLLKRLL 44 (207)
Q Consensus 27 p~v~~~l~i~~~Ll~r~~ 44 (207)
||+ +|.+.|||||.++
T Consensus 3 Ppi--SiDLTFHlLR~mi 18 (40)
T 2rmf_A 3 PSL--SIDLTFHLLRTLL 18 (40)
T ss_dssp CCH--HHHHHHHHHHHHH
T ss_pred CCc--chhhHHHHHHHHH
Confidence 666 6778899999998
No 216
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=33.52 E-value=4 Score=30.29 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=12.6
Q ss_pred cCCCeEEEEEecCCCCC
Q psy13818 175 MKLKHIIILQNKIDLVK 191 (207)
Q Consensus 175 lGI~~iIV~vNK~DlV~ 191 (207)
.+++ +|+|.||+|+.+
T Consensus 107 ~~~p-~ilv~nK~Dl~~ 122 (165)
T 2wji_A 107 MGAN-LLLALNKMDLAK 122 (165)
T ss_dssp TTCC-EEEEEECHHHHH
T ss_pred cCCC-EEEEEEchHhcc
Confidence 4654 899999999854
No 217
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=33.06 E-value=9.8 Score=28.58 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=20.2
Q ss_pred eecCCCCCCCchHH-HHHHHHHc--CCCeEEEEEecCCCCC
Q psy13818 154 RTGNESCPQPQTSE-HLAAIEIM--KLKHIIILQNKIDLVK 191 (207)
Q Consensus 154 V~A~eg~~~pQT~E-Hl~il~~l--GI~~iIV~vNK~DlV~ 191 (207)
+|++... ..+..+ +-.+.+.. ++ .+|+|.||+|+.+
T Consensus 91 ~D~~~~~-s~~~~~~~~~~~~~~~~~~-p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 91 VDGTTTD-AVDPAEIWPEFIARLPAKL-PITVVRNKADITG 129 (172)
T ss_dssp EETTTCC-CCSHHHHCHHHHHHSCTTC-CEEEEEECHHHHC
T ss_pred EECCCCC-CHHHHHHHHHHHHhcccCC-CEEEEEECccCCc
Confidence 7776654 233222 22233332 33 4899999999854
No 218
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=32.80 E-value=17 Score=29.11 Aligned_cols=13 Identities=54% Similarity=0.782 Sum_probs=11.2
Q ss_pred eEEEEEecCCCCC
Q psy13818 179 HIIILQNKIDLVK 191 (207)
Q Consensus 179 ~iIV~vNK~DlV~ 191 (207)
-+|+|.||+||.+
T Consensus 147 piilVgNK~DL~~ 159 (211)
T 2g3y_A 147 PIILVGNKSDLVR 159 (211)
T ss_dssp CEEEEEECTTCGG
T ss_pred cEEEEEEChHHhc
Confidence 4899999999965
No 219
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=29.87 E-value=28 Score=28.25 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=22.3
Q ss_pred eecCCCCCCCchHHHHHHH-HHcCC----CeEEEEEecCCCCCh
Q psy13818 154 RTGNESCPQPQTSEHLAAI-EIMKL----KHIIILQNKIDLVKE 192 (207)
Q Consensus 154 V~A~eg~~~pQT~EHl~il-~~lGI----~~iIV~vNK~DlV~~ 192 (207)
+|++. . ..+..+-+..+ +.+|- .-+||+.||+|+.+.
T Consensus 113 ~d~~~-~-~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 113 TQLGR-F-TAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp EETTB-C-CHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred EeCCC-C-CHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCC
Confidence 66653 3 45555544333 34432 358899999999764
No 220
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=27.13 E-value=53 Score=26.32 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=11.2
Q ss_pred eEEEEEecCCCCCh
Q psy13818 179 HIIILQNKIDLVKE 192 (207)
Q Consensus 179 ~iIV~vNK~DlV~~ 192 (207)
-+|+|-||+|+.+.
T Consensus 120 piilVgNK~Dl~~~ 133 (216)
T 4dkx_A 120 IIMLVGNKTDLADK 133 (216)
T ss_dssp EEEEEEECTTCGGG
T ss_pred eEEEEeeccchHhc
Confidence 47888999999654
No 221
>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}
Probab=25.00 E-value=80 Score=23.66 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=15.4
Q ss_pred ccCCcEEEEEEe-ecCcceee
Q psy13818 121 TEVNEKIALSRR-VEKHWSLI 140 (207)
Q Consensus 121 ~~~G~kiaIsR~-V~gh~rli 140 (207)
...|..+.+.|+ ..|+|+++
T Consensus 110 ~~~g~~~~v~rK~~dG~W~i~ 130 (139)
T 3rob_A 110 ELAGHAMSIFRRSMFGEWQLA 130 (139)
T ss_dssp EEEEEEEEEEEECTTSCEEEE
T ss_pred EeeccEEEEEEECCCCcEEEE
Confidence 345556778888 89999998
No 222
>3uhm_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; amidohydrolases, anti-bacterial agents, bacteria, catalytic drug design; HET: RFN; 1.26A {Pseudomonas aeruginosa} PDB: 2ves_A* 3u1y_A* 3p3e_A*
Probab=24.55 E-value=75 Score=28.22 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=31.3
Q ss_pred eecCcceeeccccccccccceeeecCCCCCCCchHHHHHH-HHHcCCCeEEEEEec
Q psy13818 132 RVEKHWSLIEGTVTTKVLSTRKRTGNESCPQPQTSEHLAA-IEIMKLKHIIILQNK 186 (207)
Q Consensus 132 ~V~gh~rligg~~~~nMiaGa~V~A~eg~~~pQT~EHl~i-l~~lGI~~iIV~vNK 186 (207)
.++.+|.++.- ++++- .+. ..|. .=+|.||++. +.-|||++++|-++=
T Consensus 49 ~I~A~~~~V~~----T~l~T-~L~-~~g~-~V~TVEHllAAL~g~gIDN~~Ievdg 97 (299)
T 3uhm_A 49 EIPARAENVGE----TTMST-TLV-KGDV-KVDTVEHLLSAMAGLGIDNAYVELSA 97 (299)
T ss_dssp EEECCGGGEEE----CSSSC-EEE-ETTE-EEBCCHHHHHHHHHTTCCCEEEEESS
T ss_pred eEeeeHHHccc----cccee-EEc-cCCE-EEEEHHHHHHHHHhCCCceEEEEEcC
Confidence 46777777721 11111 132 3354 6799999875 678999999998854
No 223
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=24.40 E-value=7.9 Score=32.60 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=33.6
Q ss_pred CcEEEEEEeecCcceeecc----ccccccc-----ccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCC
Q psy13818 124 NEKIALSRRVEKHWSLIEG----TVTTKVL-----STRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVK 191 (207)
Q Consensus 124 G~kiaIsR~V~gh~rligg----~~~~nMi-----aGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~ 191 (207)
+.++.+. +.||..+|-.. .+.++.+ +++. +|+... .+......-+.-++++ +|+|+||+|+.+
T Consensus 48 ~~~l~l~-DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~---e~~~~~~~~l~~~~~p-~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 48 NKDLEIQ-DLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL---ERNLYLTTQLIETGIP-VTIALNMIDVLD 121 (272)
T ss_dssp CTTEEEE-ECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHTCSC-EEEEEECHHHHH
T ss_pred CCeEEEE-ECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch---HhHHHHHHHHHhcCCC-EEEEEEChhhCC
Confidence 4467776 88998887531 1222222 2222 665432 1111121222335775 889999999864
No 224
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=22.62 E-value=76 Score=27.31 Aligned_cols=12 Identities=33% Similarity=0.199 Sum_probs=8.9
Q ss_pred EEEEecCCCCCh
Q psy13818 181 IILQNKIDLVKE 192 (207)
Q Consensus 181 IV~vNK~DlV~~ 192 (207)
++++||+|+.+.
T Consensus 197 ivvlNK~Dl~~~ 208 (337)
T 2qm8_A 197 MIAVNKADDGDG 208 (337)
T ss_dssp EEEEECCSTTCC
T ss_pred EEEEEchhccCc
Confidence 556699998753
No 225
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=22.48 E-value=32 Score=26.19 Aligned_cols=13 Identities=54% Similarity=0.782 Sum_probs=11.2
Q ss_pred eEEEEEecCCCCC
Q psy13818 179 HIIILQNKIDLVK 191 (207)
Q Consensus 179 ~iIV~vNK~DlV~ 191 (207)
.+|+|.||+|+.+
T Consensus 116 piilV~NK~Dl~~ 128 (192)
T 2cjw_A 116 PIILVGNKSDLVR 128 (192)
T ss_dssp CEEEEEECTTCGG
T ss_pred eEEEEEechhhhc
Confidence 4899999999965
No 226
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=22.13 E-value=62 Score=29.23 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=12.3
Q ss_pred HcCCCeEEEEEecCCCCCh
Q psy13818 174 IMKLKHIIILQNKIDLVKE 192 (207)
Q Consensus 174 ~lGI~~iIV~vNK~DlV~~ 192 (207)
++..+. |+++||+|+.+.
T Consensus 267 L~~~P~-ILVlNKlDl~~~ 284 (416)
T 1udx_A 267 LLRRPS-LVALNKVDLLEE 284 (416)
T ss_dssp HHHSCE-EEEEECCTTSCH
T ss_pred hhcCCE-EEEEECCChhhH
Confidence 345554 555699999875
No 227
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=20.03 E-value=79 Score=28.10 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=13.0
Q ss_pred CeEEEEEecCCCCChh
Q psy13818 178 KHIIILQNKIDLVKEG 193 (207)
Q Consensus 178 ~~iIV~vNK~DlV~~~ 193 (207)
+-+|+++||+|+...+
T Consensus 215 kP~i~v~NK~D~~~~~ 230 (397)
T 1wxq_A 215 KPMVIAANKADAASDE 230 (397)
T ss_dssp SCEEEEEECGGGSCHH
T ss_pred CCEEEEEeCccccchH
Confidence 6689999999998543
Done!