RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13818
(207 letters)
>d1kk1a2 b.44.1.1 (A:322-410) Initiation factor eIF2 gamma subunit
{Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 89
Score = 110 bits (277), Expect = 2e-32
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 56 KLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISL 115
L + HLL+R++G ++ KV+ + R EVLL+N+G+ T G V D ++ L
Sbjct: 3 SLRLEVHLLERVVGT-----EQELKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKL 57
Query: 116 TNPVCTEVNEKIALSRRVEKHWSLI 140
PVC E +++A+SR++ W LI
Sbjct: 58 QIPVCAEPGDRVAISRQIGSRWRLI 82
>d1s0ua2 b.44.1.1 (A:348-437) Initiation factor eIF2 gamma subunit
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 90
Score = 110 bits (277), Expect = 2e-32
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 56 KLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISL 115
K+ I +LL R++G K+ K++ L EVL++NIG+ +T G + + + D+A I L
Sbjct: 4 KITIRANLLDRVVGT-----KEELKIEPLRTGEVLMLNIGTATTAGVITSARGDIADIKL 58
Query: 116 TNPVCTEVNEKIALSRRVEKHWSLI 140
P+C E+ +++A+SRRV W LI
Sbjct: 59 KLPICAEIGDRVAISRRVGSRWRLI 83
>d2qn6a2 b.44.1.1 (A:321-415) Initiation factor eIF2 gamma subunit
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 95
Score = 106 bits (266), Expect = 1e-30
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 56 KLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISL 115
+ I Y+LL+R++G K+ KV + E L++++GS +T G V + K D ++ L
Sbjct: 8 NIRIKYNLLERVVGA-----KEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVEL 62
Query: 116 TNPVCTEVNE-KIALSRRVEKHWSLI 140
PV N + +SR++ W +I
Sbjct: 63 RRPVAVWSNNIRTVISRQIAGRWRMI 88
>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 121
Score = 39.7 bits (92), Expect = 3e-05
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 1 VGTKIEPTLCRADRLVGQVLGAVGALPKI 29
VGTK++P L + D + G V+G G LP +
Sbjct: 93 VGTKLDPYLTKGDLMAGNVVGKPGKLPPV 121
>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Methanococcus jannaschii [TaxId:
2190]}
Length = 118
Score = 38.1 bits (88), Expect = 1e-04
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 VGTKIEPTLCRADRLVGQVLGAVGALP 27
VGT ++P L ++D L G V+G G LP
Sbjct: 91 VGTTLDPYLTKSDALTGSVVGLPGTLP 117
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 37.2 bits (86), Expect = 5e-04
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 160 CPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVK 204
P PQT EH+ + + +I++ NK+D+V + + + E V+
Sbjct: 103 GPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVR 147
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 35.4 bits (81), Expect = 0.002
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVK 204
P PQT EHL + ++H+++ NK D V++ + E E ++
Sbjct: 103 PMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIR 146
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 35.2 bits (80), Expect = 0.003
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 160 CPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFV 206
QT EH + H++++ NK+D + E++++ V +
Sbjct: 145 ERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKL 191
>d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit,
domain II {Sulfolobus solfataricus [TaxId: 2287]}
Length = 114
Score = 32.7 bits (74), Expect = 0.008
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 1 VGTKIEPTLCRADRLVGQVLGA 22
+GT ++P+L +AD L+G ++
Sbjct: 91 IGTYLDPSLTKADNLLGSIITL 112
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 33.8 bits (77), Expect = 0.010
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 160 CPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQA 195
QT EH + ++ +I+ NK+D VK ++
Sbjct: 127 SKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDES 162
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 33.3 bits (75), Expect = 0.011
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 160 CPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
+ QT EH+ + M L +I+ NK+DL + +++++IV V
Sbjct: 124 SVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVS 171
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 29.2 bits (64), Expect = 0.31
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 4/148 (2%)
Query: 63 LLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTE 122
L++ + G+ + K + NIG + + A + + S + +
Sbjct: 24 LVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK 83
Query: 123 VNEKIA---LSRRVEKHWSLIEGTVTTKVLSTRKRTGNESCPQPQTSEHLAAIEIMKLKH 179
+I+ +++ G NE PQPQT EH A+ I+ +K+
Sbjct: 84 FLRRISFIDAPGHEVLMATMLSGAALMDGAILV-VAANEPFPQPQTREHFVALGIIGVKN 142
Query: 180 IIILQNKIDLVKEGQANEQHEQIVKFVQ 207
+II+QNK+D+V + +A Q+ QI +F +
Sbjct: 143 LIIVQNKVDVVSKEEALSQYRQIKQFTK 170
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 29.0 bits (64), Expect = 0.40
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 163 PQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHE 200
P +S + +I+K K I+L NK D + E
Sbjct: 28 PMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKE 65
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 27.0 bits (59), Expect = 1.3
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 159 SCPQPQTSEH-----LAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQ 201
+ P+TS + L E +L+ ++++ NK+DL E + E
Sbjct: 19 TVKMPETSTYIIDKFLVLAEKNELETVMVI-NKMDLYDEDDLRKVREL 65
>d1n1ta1 b.29.1.15 (A:413-634) Trypanosoma sialidase, C-terminal
domain {Trypanosoma rangeli [TaxId: 5698]}
Length = 222
Score = 24.7 bits (54), Expect = 7.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 43 LLGVRMEGDKKGAKLEISY 61
LLG +EG L +SY
Sbjct: 92 LLGAGLEGPGDAKLLGLSY 110
>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 78
Score = 23.4 bits (50), Expect = 9.2
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 165 TSEHLAAIEIMKLKHIIILQNKIDLVKEGQAN 196
HL + I + L + + + G ++
Sbjct: 46 KESHLIELNIADPEDRARLLSAAESLLSGPSS 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.371
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 690,011
Number of extensions: 29176
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 18
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)