BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13819
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/246 (43%), Positives = 150/246 (60%), Gaps = 2/246 (0%)
Query: 67 RARMSRTFAIDLAGDTFRLNEDPFQFVSGSFHYFRAPPGRWCWIMRAMRAAGLNALSTYV 126
R R F ID + D+F + PF+++SGS HY R P W + M+ AGLNA+ TYV
Sbjct: 2 RNATQRMFEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYV 61
Query: 127 EWRSHEVHPGHYHYDGHRDIEHFLQLAVEEDLYILLRPGPFICGKRDFGGFPPWLLKVAP 186
W HE PG Y + D+E+FL+LA E L ++LRPGP+IC + + GG P WLL+
Sbjct: 62 PWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLE-KE 120
Query: 187 DILLRQNHPVYQRYVTRWFQELFPRIQKYLYGNDRPIILVQVENEYGSDAECDPAHAVWL 246
ILLR + P Y V +W L P+++ LY N P+I VQVENEYGS CD + +L
Sbjct: 121 SILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPVITVQVENEYGSYFACDFDYLRFL 180
Query: 247 RDLLRTYVQDKAVLYSTDGAFDAYLRC-TVDGVYSTVDFTVFKDVNVSFQAQRTRAPQGP 305
+ R ++ D VL++TDGA +L+C + G+Y+TVDF ++ +F +QR P+GP
Sbjct: 181 QKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGP 240
Query: 306 LVNAEF 311
L+N+EF
Sbjct: 241 LINSEF 246
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 4 WSKGVLFANGRHWGRYWSEVGPQYSLFVPEEFLKVGT-NRITIFELTRAPDKYD------ 56
W+KG ++ NG + GRYW GPQ +LFVP+ L N IT+ EL AP D
Sbjct: 553 WTKGQVWINGFNLGRYWPARGPQLTLFVPQHILMTSAPNTITVLELEWAPCSSDDPELCA 612
Query: 57 VDFVDK 62
V FVD+
Sbjct: 613 VTFVDR 618
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 134 bits (336), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 128/237 (54%), Gaps = 11/237 (4%)
Query: 81 DTFRLNEDPFQFVSGSFHYFRAPPGRWCWIMRAMRAAGLNALSTYVEWRSHEVHPGHYHY 140
D F L+ F+ +SG+ HYFR PP W + ++A G N + TYV W HE G +H+
Sbjct: 8 DDFYLDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHF 67
Query: 141 DGHRDIEHFLQLAVEEDLYILLRPGPFICGKRDFGGFPPWLLKVAPDILLRQNHPVYQRY 200
+G D+E FLQ+A + LY ++RP PFIC + +FGG P WLL ++ +R + P Y
Sbjct: 68 EGDLDLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWLL--TKNMRIRSSDPAYIEA 125
Query: 201 VTRWFQELFPRIQKYLYGNDRPIILVQVENEYGSDAECDPAHAVWLRDLLRTYVQDKAVL 260
V R++ +L PR+ L N I+++QVENEYGS E D A+ +R L+ L
Sbjct: 126 VGRYYDQLLPRLVPRLLDNGGNILMMQVENEYGSYGE-DKAYLRAIRQLMEE-CGVTCPL 183
Query: 261 YSTDGAFDAYLRCTV---DGVYSTVDFTVFKDVNVSFQAQRTRAPQG---PLVNAEF 311
+++DG + A L+ + ++ T +F N S Q Q G PL+ EF
Sbjct: 184 FTSDGPWRATLKAGTLIEEDLFVTGNFGSKAPYNFS-QMQEFFDEHGKKWPLMCMEF 239
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 11/62 (17%)
Query: 1 MRRWSKGVLFANGRHWGRYWSEVGPQYSLFVPEEFLKVGTNRITIFE----------LTR 50
+ + KGV F NG++ GR+W+ VGP SL++P +LK G NRI IFE LTR
Sbjct: 525 LSEFGKGVAFVNGQNLGRFWN-VGPTLSLYIPHSYLKEGANRIIIFETEGQYKEEIHLTR 583
Query: 51 AP 52
P
Sbjct: 584 KP 585
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 115/235 (48%), Gaps = 3/235 (1%)
Query: 77 DLAGDTFRLNEDPFQFVSGSFHYFRAPPGRWCWIMRAMRAAGLNALSTYVEWRSHEVHPG 136
++ +TF LN +PF + HY R P W ++ +A G N + YV W HE G
Sbjct: 9 EVGKNTFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEPEEG 68
Query: 137 HYHYDGHRDIEHFLQLAVEEDLYILLRPGPFICGKRDFGGFPPWLLKVAPDILLRQNHPV 196
Y + G +DI F +LA E Y+++RPGP++C + + GG P WLLK DI LR+ P
Sbjct: 69 RYDFAGQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLK-KKDIKLREQDPY 127
Query: 197 YQRYVTRWFQELFPRIQKYLYGNDRPIILVQVENEYGSDAECDPAHAVWLRDLLRTYVQD 256
Y V + E+ ++ II VQVENEYG+ D + +RD ++
Sbjct: 128 YXERVKLFLNEVGKQLADLQISKGGNIIXVQVENEYGAFG-IDKPYISEIRDXVKQAGFT 186
Query: 257 KAVLYSTDGAFDAYLRCTVDGVYSTVDFTVFKDVNVSFQAQRTRAPQGPLVNAEF 311
L+ D + + +D + T++F +++ F+ + P PL +EF
Sbjct: 187 GVPLFQCDWNSN-FENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEF 240
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 3 RWSKGVLFANGRHWGRYWSEVGPQYSLFVPEEFLKVGTNRITIFELTRAPDKYDVD 58
WSKG ++ NG GRYW E+GPQ +L+VP +LK G N I I + P K + +
Sbjct: 529 NWSKGXVWVNGHAIGRYW-EIGPQQTLYVPGCWLKKGENEIIILDXA-GPSKAETE 582
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 93.2 bits (230), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 79/155 (50%), Gaps = 4/155 (2%)
Query: 85 LNEDPFQFVSGSFHYFRAPPGR-WCWIMRAMRAAGLNALSTYVEWRSHEVHPGHYHYDGH 143
+N + SG H +R P + I ++A G N +S YV+W E +PGHY +G
Sbjct: 15 VNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGNPGHYSAEGI 74
Query: 144 RDIEHFLQLAVEEDLYILLRPGPFICGKRDFGGFPPWLLKVAPDILLRQNHPVYQRYVTR 203
D++ F A E +Y+L RPGP+I + GGFP WL +V D +LR + Y +
Sbjct: 75 FDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRV--DGILRTSDEAYLKATDN 132
Query: 204 WFQELFPRIQKYLYGNDRPIILVQVENEYGSDAEC 238
+ + I K N PIIL Q ENEY S A C
Sbjct: 133 YASNIAATIAKAQITNGGPIILYQPENEY-SGACC 166
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 9 LFANGRHWGRYWSEVGPQYSLFVPEEFLKV-GTNRITI 45
L+ NG +G+Y + +GPQ S VPE L GTN + +
Sbjct: 889 LYVNGYQYGKYVNNIGPQTSFPVPEGILNYHGTNWLAL 926
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 72/145 (49%), Gaps = 3/145 (2%)
Query: 94 SGSFHYFRAP-PGRWCWIMRAMRAAGLNALSTYVEWRSHEVHPGHYHYDGHRDIEHFLQL 152
SG H FR P P + + ++A G N +S YV+W E PG + DG +E F +
Sbjct: 44 SGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGKPGRFRADGIFSLEPFFEA 103
Query: 153 AVEEDLYILLRPGPFICGKRDFGGFPPWLLKVAPDILLRQNHPVYQRYVTRWFQELFPRI 212
A + +Y+L RPGP+I + GGFP WL +V LR + P Y + + I
Sbjct: 104 ATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKGK--LRTDAPDYLHATDNYVAHIASII 161
Query: 213 QKYLYGNDRPIILVQVENEYGSDAE 237
K N P+IL Q ENEY AE
Sbjct: 162 AKAQITNGGPVILYQPENEYSGAAE 186
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 6 KGVLFANGRHWGRYWSEVGPQYSLFVPEEFL 36
+ +L+ NG +G+Y S +GPQ VPE L
Sbjct: 918 RALLYVNGFQYGKYVSNIGPQTEFPVPEGIL 948
>pdb|3TTS|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTY|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
Length = 675
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 24/107 (22%)
Query: 161 LLRPGPFICGKRDFGGFPPWLLKVAPDILLRQ----------------NHPVYQRYVTRW 204
L + ++C G P W+ K PD+L N P Y++Y
Sbjct: 69 LTKENIYLCLATSTGAHPAWMAKKYPDVLRVDYEGRKRKFGGRHNSCPNSPTYRKYAKIL 128
Query: 205 FQELFPRIQKYLYGNDRPIILVQVENEYGSDAECDPAHA---VWLRD 248
+L R Y + I++ V NEYG CD VWL++
Sbjct: 129 AGKLAER-----YKDHPQIVMWHVSNEYGGYCYCDNCEKQFRVWLKE 170
>pdb|2AOZ|A Chain A, Crystal Structure Of The Myotoxin-Ii From Atropoides
Nummifer Venom
Length = 121
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 203 RWFQELFPRIQKYLYG-NDRPIILVQVENEYGSDAECDPAHAVWLRDLLRTYVQD 256
+ + P+ Y Y D+ I+ + + ECD A A+ LRD L TY ++
Sbjct: 52 KALTDCSPKTDSYSYSWKDKTIVCGKNNPCLKQECECDKAVAICLRDNLDTYNKN 106
>pdb|3F8T|A Chain A, Crystal Structure Analysis Of A Full-Length Mcm Homolog
From Methanopyrus Kandleri
Length = 506
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 91 QFVSGSFHYFRAPPGRWCWIMRAMRAAGLNALSTYVEWRSHEVHPGHYHYDGHRDIEHFL 150
+ V+ H R PG I+ +R+A L+AL + + EVHP ++E F
Sbjct: 144 ELVAVRLHGHRLGPGLRVEILGIVRSATLDALEVHKKDPIPEVHPDPA------ELEEFR 197
Query: 151 QLAVEEDLYILLRPGPFICGKRDFGGF 177
+LA ++ L R + G + G
Sbjct: 198 ELADKDPLTTFARAIAPLPGAEEVGKM 224
>pdb|3FRK|A Chain A, X-Ray Structure Of Qdtb From T. Thermosaccharolyticum In
Complex With A Plp:tdp-3-Aminoquinovose Aldimine
pdb|3FRK|B Chain B, X-Ray Structure Of Qdtb From T. Thermosaccharolyticum In
Complex With A Plp:tdp-3-Aminoquinovose Aldimine
Length = 373
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 196 VYQRYVTRWFQELFPRIQKYLYGNDRPIILVQVENEYGSDAECDPAHAVWLRDLLRTYVQ 255
V +Y+ +W +E QKY+ G + P +++ VE +Y A VW ++R+ +
Sbjct: 241 VKLKYLDKWNEERRKIAQKYIAGINNPNVIIPVEADY--------AKHVWYTFVIRSEKR 292
Query: 256 DKAVLYSTDGAF 267
D+ Y +
Sbjct: 293 DELQKYLNNNGI 304
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.471
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,032,992
Number of Sequences: 62578
Number of extensions: 482670
Number of successful extensions: 1298
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1278
Number of HSP's gapped (non-prelim): 15
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)