RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13819
(323 letters)
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase,
glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo
sapiens} PDB: 3thc_A*
Length = 654
Score = 233 bits (594), Expect = 1e-71
Identities = 105/241 (43%), Positives = 149/241 (61%), Gaps = 2/241 (0%)
Query: 72 RTFAIDLAGDTFRLNEDPFQFVSGSFHYFRAPPGRWCWIMRAMRAAGLNALSTYVEWRSH 131
R F ID + D+F + PF+++SGS HY R P W + M+ AGLNA+ TYV W H
Sbjct: 7 RMFEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFH 66
Query: 132 EVHPGHYHYDGHRDIEHFLQLAVEEDLYILLRPGPFICGKRDFGGFPPWLLKVAPDILLR 191
E PG Y + D+E+FL+LA E L ++LRPGP+IC + + GG P WLL+ ILLR
Sbjct: 67 EPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEK-ESILLR 125
Query: 192 QNHPVYQRYVTRWFQELFPRIQKYLYGNDRPIILVQVENEYGSDAECDPAHAVWLRDLLR 251
+ P Y V +W L P+++ LY N P+I VQVENEYGS CD + +L+ R
Sbjct: 126 SSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQKRFR 185
Query: 252 TYVQDKAVLYSTDGAFDAYLRC-TVDGVYSTVDFTVFKDVNVSFQAQRTRAPQGPLVNAE 310
++ D VL++TDGA +L+C + G+Y+TVDF ++ +F +QR P+GPL+N+E
Sbjct: 186 HHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLINSE 245
Query: 311 F 311
F
Sbjct: 246 F 246
Score = 69.8 bits (170), Expect = 2e-13
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 1 MRRWSKGVLFANGRHWGRYWSEVGPQYSLFVPEEFL-KVGTNRITIFELTRA------PD 53
W+KG ++ NG + GRYW GPQ +LFVP+ L N IT+ EL A P+
Sbjct: 550 FPGWTKGQVWINGFNLGRYWPARGPQLTLFVPQHILMTSAPNTITVLELEWAPCSSDDPE 609
Query: 54 KYDVDFVDK 62
V FVD+
Sbjct: 610 LCAVTFVDR 618
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II,
NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides
thetaiotaomicron vpi-5482}
Length = 612
Score = 224 bits (571), Expect = 1e-68
Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 5/241 (2%)
Query: 71 SRTFAIDLAGDTFRLNEDPFQFVSGSFHYFRAPPGRWCWIMRAMRAAGLNALSTYVEWRS 130
TF + +TF LN +PF + HY R P W ++ +A G+N + YV W
Sbjct: 5 EGTFEVG--KNTFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKMCKALGMNTICLYVFWNF 62
Query: 131 HEVHPGHYHYDGHRDIEHFLQLAVEEDLYILLRPGPFICGKRDFGGFPPWLLKVAPDILL 190
HE G Y + G +DI F +LA E +Y+++RPGP++C + + GG P WLLK DI L
Sbjct: 63 HEPEEGRYDFAGQKDIAAFCRLAQENGMYVIVRPGPYVCAEWEMGGLPWWLLKK-KDIKL 121
Query: 191 RQNHPVYQRYVTRWFQELFPRIQKYLYGNDRPIILVQVENEYGSDAECDPAHAVWLRDLL 250
R+ P Y V + E+ ++ II+VQVENEYG+ D + +RD++
Sbjct: 122 REQDPYYMERVKLFLNEVGKQLADLQISKGGNIIMVQVENEYGAFG-IDKPYISEIRDMV 180
Query: 251 RTYVQDKAVLYSTDGAFDAYLRCTVDGVYSTVDFTVFKDVNVSFQAQRTRAPQGPLVNAE 310
+ L+ D + +D + T++F +++ F+ + P PL+ +E
Sbjct: 181 KQAGFTGVPLFQCDWN-SNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLMCSE 239
Query: 311 F 311
F
Sbjct: 240 F 240
Score = 72.0 bits (176), Expect = 4e-14
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 1 MRRWSKGVLFANGRHWGRYWSEVGPQYSLFVPEEFLKVGTNRITIFELTRAPDKYDVDFV 60
M WSKG+++ NG GRYW +GPQ +L+VP +LK G N I I ++ P K + + +
Sbjct: 527 MMNWSKGMVWVNGHAIGRYWE-IGPQQTLYVPGCWLKKGENEIIILDMA-GPSKAETEGL 584
Query: 61 DK 62
+
Sbjct: 585 RQ 586
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller,
glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB:
4e8c_A
Length = 595
Score = 211 bits (539), Expect = 4e-64
Identities = 84/244 (34%), Positives = 128/244 (52%), Gaps = 12/244 (4%)
Query: 73 TFAIDLAGDTFRLNEDPFQFVSGSFHYFRAPPGRWCWIMRAMRAAGLNALSTYVEWRSHE 132
F I D F L+ F+ +SG+ HYFR PP W + ++A G N + TYV W HE
Sbjct: 3 RFEI---RDDFYLDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHE 59
Query: 133 VHPGHYHYDGHRDIEHFLQLAVEEDLYILLRPGPFICGKRDFGGFPPWLLKVAPDILLRQ 192
G +H++G D+E FLQ+A + LY ++RP PFIC + +FGG P WLL ++ +R
Sbjct: 60 PCEGEFHFEGDLDLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWLLT--KNMRIRS 117
Query: 193 NHPVYQRYVTRWFQELFPRIQKYLYGNDRPIILVQVENEYGSDAECDPAHAVWLRDLLRT 252
+ P Y V R++ +L PR+ L N I+++QVENEYGS D A+ +R L+
Sbjct: 118 SDPAYIEAVGRYYDQLLPRLVPRLLDNGGNILMMQVENEYGSYG-EDKAYLRAIRQLME- 175
Query: 253 YVQDKAVLYSTDGAFDAYLRCTV---DGVYSTVDFTVFKDVNVS--FQAQRTRAPQGPLV 307
L+++DG + A L+ + ++ T +F N S + + PL+
Sbjct: 176 ECGVTCPLFTSDGPWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLM 235
Query: 308 NAEF 311
EF
Sbjct: 236 CMEF 239
Score = 70.1 bits (171), Expect = 2e-13
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 1 MRRWSKGVLFANGRHWGRYWSEVGPQYSLFVPEEFLKVGTNRITIFELTRAPDKYDVDFV 60
+ + KGV F NG++ GR+W+ VGP SL++P +LK G NRI IFE + ++
Sbjct: 525 LSEFGKGVAFVNGQNLGRFWN-VGPTLSLYIPHSYLKEGANRIIIFETEGQYKE-EIHLT 582
Query: 61 DK 62
K
Sbjct: 583 RK 584
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family
35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A
{Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A*
Length = 1003
Score = 205 bits (523), Expect = 6e-60
Identities = 67/280 (23%), Positives = 104/280 (37%), Gaps = 24/280 (8%)
Query: 63 ISQRRARMSRTFAIDLAGDTFRLNEDPFQFVSGSFHYFRAP-PGRWCWIMRAMRAAGLNA 121
I A+ + + ++ + SG H FR P P + + ++A G N
Sbjct: 13 IILDDAKGPLQNIVTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNT 72
Query: 122 LSTYVEWRSHEVHPGHYHYDGHRDIEHFLQLAVEEDLYILLRPGPFICGKRDFGGFPPWL 181
+S YV+W E PG + DG +E F + A + +Y+L RPGP+I + GGFP WL
Sbjct: 73 VSFYVDWALLEGKPGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWL 132
Query: 182 LKVAPDILLRQNHPVYQRYVTRWFQELFPRIQKYLYGNDRPIILVQVENEYGSDA----E 237
+V LR + P Y + + I K N P+IL Q ENEY A
Sbjct: 133 QRV--KGKLRTDAPDYLHATDNYVAHIASIIAKAQITNGGPVILYQPENEYSGAAEGVLF 190
Query: 238 CDPAHAVWLRDLLRTYVQDKAVLYSTDGAFDAYLRC-----TVDGVY--------STVDF 284
+ + ++ D R L + D +VD
Sbjct: 191 PNKPYMQYVIDQARNA-GIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHP 249
Query: 285 TVFKDVNV---SFQAQRTRAPQGPLVNAEFEFFPMLLWAG 321
+ + D + Q +P P EF+ + G
Sbjct: 250 SAWPDNGLPTTWRQDHLNISPSTPFSLVEFQGGAFDPFGG 289
Score = 43.6 bits (102), Expect = 7e-05
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 1 MRRWSKGVLFANGRHWGRYWSEVGPQYSLFVPEEFLKV-GTNRITI 45
+ +L+ NG +G+Y S +GPQ VPE L G N I +
Sbjct: 913 AAAPYRALLYVNGFQYGKYVSNIGPQTEFPVPEGILDYNGDNWIGV 958
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family
GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN;
1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27
b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A*
Length = 971
Score = 200 bits (508), Expect = 6e-58
Identities = 65/268 (24%), Positives = 105/268 (39%), Gaps = 25/268 (9%)
Query: 76 IDLAGDTFRLNEDPFQFVSGSFHYFRAP-PGRWCWIMRAMRAAGLNALSTYVEWRSHEVH 134
+ + +N + SG H +R P + I ++A G N +S YV+W E +
Sbjct: 6 VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65
Query: 135 PGHYHYDGHRDIEHFLQLAVEEDLYILLRPGPFICGKRDFGGFPPWLLKVAPDILLRQNH 194
PGHY +G D++ F A E +Y+L RPGP+I + GGFP WL + D +LR +
Sbjct: 66 PGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQR--VDGILRTSD 123
Query: 195 PVYQRYVTRWFQELFPRIQKYLYGNDRPIILVQVENEYGS-----DAECDPAHAVWLRDL 249
Y + + + I K N PIIL Q ENEY + D ++ ++ D
Sbjct: 124 EAYLKATDNYASNIAATIAKAQITNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIEDH 183
Query: 250 LRTYVQDKAVLYSTDGAFDAYLRC-------------TVDGVYSTVDFTVFKDVNV---S 293
R S D + + + + + + N+
Sbjct: 184 ARDAGIV-VPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYF 242
Query: 294 FQAQRTRAPQGPLVNAEFEFFPMLLWAG 321
+ ++P P EF+ W G
Sbjct: 243 HTSHEQQSPSTPYSLVEFQGGAFDPWGG 270
Score = 45.6 bits (107), Expect = 2e-05
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 4 WSKGVLFANGRHWGRYWSEVGPQYSLFVPEEFLKV-GTNRITI 45
+ L+ NG +G+Y + +GPQ S VPE L GTN + +
Sbjct: 884 AYRVQLYVNGYQYGKYVNNIGPQTSFPVPEGILNYHGTNWLAL 926
>3u7v_A Beta-galactosidase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, TIM barrel,
glyco_hydro_42; HET: MSE; 1.80A {Caulobacter crescentus}
Length = 552
Score = 144 bits (363), Expect = 4e-39
Identities = 31/200 (15%), Positives = 63/200 (31%), Gaps = 20/200 (10%)
Query: 81 DTFRLNEDPFQFVSGSFHYFRAPPGRWCWIMRAMRAAGLNALSTYVEWRSHEVHPGHYHY 140
++ PF ++ + A P + + A+ G N + + W E G + +
Sbjct: 49 HALMVDGAPFLMLAAQVNNSSAWPSQMAKVWPAIEKVGANTVQVPIAWEQIEPVEGQFDF 108
Query: 141 DGHRDIEHFLQLAVEEDLY-ILLRPGPFICG---------KRDFGGFPPWLLKVAPDILL 190
++ L+ A E + +LL G + K D FP +
Sbjct: 109 SY---LDLLLEQARERKVRLVLLWFGTWKNSSPSYAPEWVKLDDKRFPRLIKD--DGERS 163
Query: 191 RQNHPVYQRYVTRWFQELFPRIQK--YLYGNDRPIILVQVENEYGSDAECDPAHAVWLRD 248
P+ + + + + + +I+VQVENE G+ +
Sbjct: 164 YSMSPLAKSTLDADRKAFVALMTHLKAKDAAQKTVIMVQVENETGT-YGSVRDFGPAAQK 222
Query: 249 LLRTYVQDKAV--LYSTDGA 266
+ V + + G
Sbjct: 223 VFNGPAPATLVKAVGAKPGT 242
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase,
hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp}
PDB: 3tts_A*
Length = 675
Score = 60.3 bits (145), Expect = 3e-10
Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 17/166 (10%)
Query: 103 PPGRWCWIMRAMRAAGLNALSTYVE-WRSHEVHPGHYHYDGHRDIEHFLQLAVEEDLYIL 161
MR AG++ + V W + Y + ++ ++ +E++Y+
Sbjct: 21 DKATMEEDMRMFNLAGIDVATVNVFSWAKIQRDEVSYDFT---WLDDIIERLTKENIYLC 77
Query: 162 LRPGPFICGKRDFGGFPPWLLKVAPDILL--------RQNHPVYQRYVTRWFQELFPRIQ 213
L +P L N P Y++Y +L R
Sbjct: 78 LATSTGAHPAWMAKKYPDVLRVDYEGRKRKFGGRHNSCPNSPTYRKYAKILAGKLAER-- 135
Query: 214 KYLYGNDRPIILVQVENEYGSDAECDPAHAVWLRDLLRTYVQDKAV 259
Y + I++ V NEYG CD + L Y +A+
Sbjct: 136 ---YKDHPQIVMWHVSNEYGGYCYCDNCEKQFRVWLKERYGTLEAL 178
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42,
trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP:
b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*
Length = 645
Score = 58.4 bits (140), Expect = 1e-09
Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 34/172 (19%)
Query: 103 PPGRWCWIMRAMRAAGLNALSTYVE-WRSHEVHPGHYHYDGHRDIEHFLQLAVEEDLYIL 161
P RW R MR AGL+ + W E PG + ++ + E L ++
Sbjct: 12 PKERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWG---WLDEAIATLAAEGLKVV 68
Query: 162 LRPGPFICGKRDFGGFPPWLLKVAPDILLRQ----------------NHPVYQRYVTRWF 205
L P WL+ P+IL + PVY+ R
Sbjct: 69 LGTPTATP--------PKWLVDRYPEILPVDREGRRRRFGGRRHYCFSSPVYREEARRIV 120
Query: 206 QELFPRIQKYLYGNDRPIILVQVENEYGSDAECDPAHAVWLRDLLRTYVQDK 257
L R YG + Q +NEYG + + ++ R +++ +
Sbjct: 121 TLLAER-----YGGLEAVAGFQTDNEYGCH-DTVRCYCPRCQEAFRGWLEAR 166
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 6e-06
Identities = 46/342 (13%), Positives = 88/342 (25%), Gaps = 123/342 (35%)
Query: 19 YWSEVGPQYSLFVP--EEFLKVGTNRITIFELTRAPDKYD------VDFVDKISQRRARM 70
Y+ E+ Y + + +K T+ EL R + ++ ++ +
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAE--TLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 71 SRTFAIDLAGDTFRLNEDPF----QFVSGSFHYFRA------PPGRWCWIMRAM--RAAG 118
+ + L P Q HY PG ++ + G
Sbjct: 227 DKDY---LLSIPISC---PLIGVIQLA----HYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 119 L----------------NALSTYVEW------RSHEVHPGHY-----------HYDG--- 142
L ++ + R +E +P + +G
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 143 -------------HRDIEHF-LQLAVEEDLYILLRPGP--F-ICGK-RDFGGFPPWLLKV 184
+ L + + I L G + G + G L K
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 185 APDILLRQNH-PVYQRYVTRWFQELFPRIQ-KYLYGNDRPIILVQVENEYGSDAECDPAH 242
L Q+ P +R + ++L P+ P H
Sbjct: 397 KAPSGLDQSRIPFSERK---------LKFSNRFL-----PVAS--------------PFH 428
Query: 243 AVWLRDLLRTYVQDKAVLYSTDGAFDA-YLRCTVDGVYSTVD 283
+ L +D L + +F+A ++ VY T D
Sbjct: 429 SHLLVPASDLINKD---LVKNNVSFNAKDIQIP---VYDTFD 464
Score = 33.9 bits (77), Expect = 0.092
Identities = 59/382 (15%), Positives = 108/382 (28%), Gaps = 137/382 (35%)
Query: 26 QYSLFVP-----------EEFLKVGTNRITIFELTRAPDKYDVDFVDKISQRRARMSRTF 74
++ L VP E+F K+ L + + D D+ +
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKI---------LPEPTEGFAAD--DEPTT--------- 56
Query: 75 AIDLAGDTFRLNEDPF-QFVSGSFHYFRAPPGRWCWIMRAMRAAGLNAL-STYVEWRSHE 132
+L G F +VS + G++ ++ L + Y+ ++
Sbjct: 57 PAELVGK--------FLGYVSSLVE--PSKVGQFDQVLNLC----LTEFENCYL--EGND 100
Query: 133 VHPGHYHYDGHRDIEHFLQLAVEEDL--YILLRPGPFICGKRDFGGFPP-WLLKVAPDIL 189
+H D + +E + YI R I KR F L + +
Sbjct: 101 IHALAAKLLQENDTT---LVKTKELIKNYITAR----IMAKRPFDKKSNSALFRAVGE-- 151
Query: 190 LRQNHPVY-----QRYVTRWFQELFPRIQKYLYGNDRPII--LVQV-----ENEYGSDAE 237
N + Q +F+EL + LY ++ L++ + +
Sbjct: 152 --GNAQLVAIFGGQGNTDDYFEEL----RD-LYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 238 CDPAHA------VWLR--------DLLRT---------------YVQDKAVLYSTDGAFD 268
+ WL D L + YV +L T G
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 269 AYLRCT---VDGVYSTV---------DFT--VFKDVNVSF----QAQRTRAPQG---PLV 307
+YL+ G+ + V F V K + V F + P P +
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA-YPNTSLPPSI 323
Query: 308 NAEFEFF------PMLLWAGMS 323
+ PML + ++
Sbjct: 324 LEDSLENNEGVPSPMLSISNLT 345
Score = 30.4 bits (68), Expect = 0.95
Identities = 30/197 (15%), Positives = 59/197 (29%), Gaps = 65/197 (32%)
Query: 119 LNALSTYVEWRSHEVHPGHYHYDGHRDIEHFLQLAVEEDLYIL---LRPGPFICGKRDFG 175
++A ST R + H +EH L V + + L+ F
Sbjct: 1 MDAYST----RPLTLS--------HGSLEH--VLLVPTASFFIASQLQ--------EQFN 38
Query: 176 GFPPWLLKVAPDILLRQNHPV--------YQRYVTRWFQE----LFPRI---------QK 214
+L + + P + YV+ + F ++
Sbjct: 39 K----ILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 215 YLYGNDRPI--ILVQVENEYGSDAECDPAHAVWLRDLLRTYVQDKAVLYS--TDGAFDAY 270
YL GND I + ++ E + V ++L++ Y+ + + + A
Sbjct: 95 YLEGND--IHALAAKLLQE-------NDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 271 LRCTVDGVYSTVDFTVF 287
R +G +F
Sbjct: 146 FRAVGEGNAQL--VAIF 160
Score = 28.5 bits (63), Expect = 3.5
Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 21/113 (18%)
Query: 43 ITIFELTR-APDKYDVDFVDKISQR-RAR-MSRTFAIDLAGDTFRLNEDPFQFV--SGSF 97
+I ++ P + F + +R R + F + D E F+ + +
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF--ETIVDGKLKTEKIFKEINEHSTS 1716
Query: 98 HYFRAPPGRWCWIMR-------AMRAAGLNALSTYVEWRSHEVHPGHYHYDGH 143
+ FR+ G ++ A+ + + + +S + P + GH
Sbjct: 1717 YTFRSEKG----LLSATQFTQPALTLMEK---AAFEDLKSKGLIPADATFAGH 1762
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.006
Identities = 37/243 (15%), Positives = 82/243 (33%), Gaps = 53/243 (21%)
Query: 21 SEVGPQY-SLFV-PEEFLKVGTNRITIFELTRAPDKYDV-DFVDKISQRRARMSRTFAID 77
+E + L V P + T +++ + K DV V+K+ +
Sbjct: 369 AEYRKMFDRLSVFPPS-AHIPTILLSL--IWFDVIKSDVMVVVNKLHKYSL--------- 416
Query: 78 LAGDTFRLNEDPFQFVSGSFH--YFRAPPGRWCWIMRAMRAAGLNALSTYVEWRSHEVHP 135
+ + P + S Y A+ + ++ + + S ++ P
Sbjct: 417 -------VEKQPKESTI-SIPSIYLELKVK--LENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 136 GH-----YHYDGH--RDIEHFLQLAVEEDLYILLRPGPFICGKRDFGGFPPWLLKVAPDI 188
+ Y + GH ++IEH ++ + +++ R F+ K +
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---FLEQKIRHDSTAWNASGSILNT 523
Query: 189 LLR---------QNHPVYQRYVTRWFQELFPRIQKYLYGNDRPIILVQV--ENEYGS--- 234
L + N P Y+R V + P+I++ L + L+++ E +
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNA-ILDFLPKIEENLI-CSKYTDLLRIALMAEDEAIFE 581
Query: 235 DAE 237
+A
Sbjct: 582 EAH 584
Score = 33.3 bits (75), Expect = 0.12
Identities = 22/156 (14%), Positives = 49/156 (31%), Gaps = 46/156 (29%)
Query: 134 HPGHYHYD--------GHRDI-EHFLQLAVEEDL---YI--LLRPGPFICGKRDFG---G 176
H H+H D ++DI F A ++ + + + I K +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFED-AFVDNFDCKDVQDMPKS---ILSKEEIDHIIM 56
Query: 177 FPPWLLKVAP--DILLRQNHPVYQRYVTRWFQELFPRIQKYLYGNDRPIILVQVENEYGS 234
+ LL + + Q++V + + ++ ++ E
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI------------NYKFLMSPIKTEQR- 103
Query: 235 DAECDPAHAVWLRDLLRTYVQDKAVLYSTDGAFDAY 270
P+ + R Y++ + LY+ + F Y
Sbjct: 104 ----QPS------MMTRMYIEQRDRLYNDNQVFAKY 129
>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET:
SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A*
2osw_A* 2oyl_A* 2oym_A* 2osy_A*
Length = 481
Score = 36.5 bits (83), Expect = 0.011
Identities = 30/200 (15%), Positives = 56/200 (28%), Gaps = 39/200 (19%)
Query: 93 VSGSFHYFRAPPGRWCW----IMRAMRAAGLNALSTYVEWRSHEVHPGHYHYDGHRDIEH 148
+ S P G + + R G N + + WRS E PG Y +E
Sbjct: 52 TASSAKSA--PDGMPQFTEADLAREYADMGTNFVRFLISWRSVEPAPGVYDQQYLDRVED 109
Query: 149 FLQLAVEEDLYILL-------------RPGPFICGKRDFGGFPPWL-----LKVAPDILL 190
+ E ++L G P W L V P
Sbjct: 110 RVGWYAERGYKVMLDMHQDVYSGAITPEGNSGNGAGAIGNGAPAWATYMDGLPVEPQPRW 169
Query: 191 RQNH---PVYQRYVTRW--------FQELFPRIQKYL---YGNDRPIILVQVENE-YGSD 235
+ V + + W E + + + + + ++ ++ + NE +G
Sbjct: 170 ELYYIQPGVMRAFDNFWNTTGKHPELVEHYAKAWRAVADRFADNDAVVAYDLMNEPFGGS 229
Query: 236 AECDPAHAVWLRDLLRTYVQ 255
+ A L + +
Sbjct: 230 LQGPAFEAGPLAAMYQRTTD 249
>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom
cerevisiae, structural genomics, PSI-2, protein
structure initiative; 1.60A {Saccharomyces cerevisiae}
Length = 275
Score = 30.1 bits (68), Expect = 0.86
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 7 GVLFANGRHWGRYWSEVGPQYSLFVPEEFLK--VGTNRITIFELTRAPDKYDVDFVDKIS 64
G + + +W + G F E + G APD D ++V+K+
Sbjct: 44 GTIIISQPAIAAFWRDFGKDKPYFDAEHVIHISHGWRTYDAIA-KFAPDFADEEYVNKLE 102
Query: 65 QRRARMSRTFAIDLAG 80
+I++ G
Sbjct: 103 GEIPEKYGEHSIEVPG 118
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel,
metallo-enzyme, STRU function project, S2F, unknown
function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB:
1m68_A 1pb0_A
Length = 245
Score = 28.9 bits (65), Expect = 1.7
Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 8/98 (8%)
Query: 88 DPFQFVSGSFHYFRAPPGRWCWIMRAMRAAGLNALSTYVEWRSHEVHPGHYHYDGHRDIE 147
D + FH P +AM A + + HPG+ Y+ D++
Sbjct: 91 DSLDLIIAGFHEPVFAPHDKATNTQAMIATIASGNVHII------SHPGNPKYE--IDVK 142
Query: 148 HFLQLAVEEDLYILLRPGPFICGKRDFGGFPPWLLKVA 185
+ A + + + + F+ ++ +
Sbjct: 143 AVAEAAAKHQVALEINNSSFLHSRKGSEDNCREVAAAV 180
>2e58_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5-
methylaminomethyl-2-thiouridine, methyltransferase; HET:
SAM; 2.50A {Aquifex aeolicus}
Length = 308
Score = 29.1 bits (64), Expect = 2.0
Identities = 16/119 (13%), Positives = 24/119 (20%), Gaps = 4/119 (3%)
Query: 92 FVSGSFHYFRAPPGRWCWIMRAMRAAGLNALSTYVEWRSHEVHPGHYHYDGHRDIEHFLQ 151
FV S +A + I+ G N E L
Sbjct: 82 FVRPSRILEKAKERKVIRILDVGFGLGYNLAVALKHLWEVN-PKLRVEIIS---FEKELL 137
Query: 152 LAVEEDLYILLRPGPFICGKRDFGGFPPWLLKVAPDILLRQNHPVYQRYVTRWFQELFP 210
F+ + LKV ++ V F + F
Sbjct: 138 KEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARKRIKEVENFKADAVFHDAFS 196
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate
assisted catalysis, subst channeling, adenylation; HET:
TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A
3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A*
3vez_A*
Length = 576
Score = 28.7 bits (64), Expect = 3.1
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 2/90 (2%)
Query: 76 IDLAGDTFRLN--EDPFQFVSGSFHYFRAPPGRWCWIMRAMRAAGLNALSTYVEWRSHEV 133
D +RLN + + Y + + R R + Y + V
Sbjct: 211 FAFDSDGYRLNLIDPQARDPEDWDEYSVTERAWFAHLERIYRLPPNEFVRRYDPAKGRVV 270
Query: 134 HPGHYHYDGHRDIEHFLQLAVEEDLYILLR 163
+RD+ Q A+E ++ L
Sbjct: 271 RDTRRDPYEYRDLAATAQAALERAVFGLAD 300
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC;
1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB:
1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A*
1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A
Length = 516
Score = 28.5 bits (63), Expect = 3.8
Identities = 10/91 (10%), Positives = 24/91 (26%), Gaps = 4/91 (4%)
Query: 103 PPGRWCWIMRAMRAAGLNALSTYVEWRSHEVH-PGHYHYDGHRD-IEHFLQLAVEEDLYI 160
+ +R + G A++ W E + + + + + ++ I
Sbjct: 27 NWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPII 86
Query: 161 LLRPGPFICGKRDFGGFPPWLL--KVAPDIL 189
G P W+ K +
Sbjct: 87 STHQCGGNVGDDCNVPIPSWVWNQKSDDSLY 117
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A
{Clostridium thermocellum}
Length = 156
Score = 27.6 bits (61), Expect = 4.2
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 5 SKGVLFANGRHWGRYWSEVGPQYSLFVPEEFLKVGTNRITIFELTRAPDKYDVDFVDKIS 64
KG F N R W Y + + V L G N I + T Y + +DKI+
Sbjct: 97 EKGHYFFNTRGWNTYRT-----DIIDVY---LNAGNNTIRFYNGT--SGSYAPN-IDKIA 145
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET:
P3S ADP; 3.50A {Bacteroides fragilis}
Length = 729
Score = 28.0 bits (62), Expect = 5.0
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 98 HYFRAPPGRWCWIMRAMRAAGLNALSTYVEWRSHEVHPGHY 138
HYF + P R M+ + L V+ R +EV P +
Sbjct: 253 HYFGSIPPRVTAFMKELEIECH-KLGIPVKTRHNEVAPNQF 292
>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus
pyogenes, dehydroshikimate, PSI-2, protein ST
initiative; HET: MSE; 1.85A {Streptococcus pyogenes
serotype M1}
Length = 231
Score = 27.6 bits (61), Expect = 5.4
Identities = 9/81 (11%), Positives = 20/81 (24%), Gaps = 15/81 (18%)
Query: 39 GTNRITIFELTRAPDKYDVDFVDKISQRRARMSRTFAIDLAGDTFRLNEDPFQF-VSGSF 97
+++ + + Y+ D++D + E + S+
Sbjct: 75 LSSQEYVDIIKEINAIYNPDYID--------------FEYFTHKSVFQEMLDFPNLILSY 120
Query: 98 HYFRAPPGRWCWIMRAMRAAG 118
H F P M
Sbjct: 121 HNFEETPENLMEAFSEMTKLA 141
>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis,
aromatic amino acid biosynthe schiff base, lyase; 1.60A
{Streptococcus mutans}
Length = 259
Score = 26.9 bits (59), Expect = 8.2
Identities = 11/74 (14%), Positives = 19/74 (25%), Gaps = 13/74 (17%)
Query: 45 IFELTRAPDKYDVDFVDKISQRRARMSRTFAIDLAGDTFRLNEDPFQFVSGSFHYFRAPP 104
+ + Y D++D F D D + S+H F P
Sbjct: 112 LAIIRDIAALYQPDYID------------FEYFSYRDVLEEMYDFSN-LILSYHNFEETP 158
Query: 105 GRWCWIMRAMRAAG 118
+ + A
Sbjct: 159 ENLMEVFSELTALA 172
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S;
oxidoreductase, selenium, selenocysteine, seCys,
molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli}
SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Length = 1015
Score = 27.2 bits (60), Expect = 8.8
Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 9/92 (9%)
Query: 162 LRPGPFICGKRDFGGFPPWL---LKVAPDILLRQNHPVYQRYVTRWFQELFPRIQKYLYG 218
LR I G D G L L + + Q Y+ + Q +
Sbjct: 445 LRGHSNIQGLTDLGLLSTSLPGYLTLPSE-----KQVDLQSYLEANTPKATLADQVNYWS 499
Query: 219 NDRPIILVQVENEYGSDAECDPAHAV-WLRDL 249
N + +++ YG A+ + WL
Sbjct: 500 NYPKFFVSLMKSFYGDAAQKENNWGYDWLPKW 531
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM
glucanase, carbohydrate metabolism, cellulose
degradation, glycosidase; HET: BTB; 2.10A {Clostridium
cellulovorans}
Length = 515
Score = 27.2 bits (59), Expect = 9.0
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 100 FRAPPGRWCW--------IMRAMRAAGLNALSTYVEWRSHEVHPGHYHYDGHR--DIEHF 149
A G W ++ ++ AG N L V W H Y D +E
Sbjct: 32 MDAIGGETNWGNPMTTHAMINKIKEAGFNTLRLPVTWDGHMGAAPEYTIDQTWMKRVEEI 91
Query: 150 LQLAVEEDLYILL 162
A + D+Y+++
Sbjct: 92 ANYAFDNDMYVII 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.142 0.471
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,502,552
Number of extensions: 342431
Number of successful extensions: 898
Number of sequences better than 10.0: 1
Number of HSP's gapped: 869
Number of HSP's successfully gapped: 43
Length of query: 323
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 229
Effective length of database: 4,077,219
Effective search space: 933683151
Effective search space used: 933683151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.2 bits)