RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13819
(323 letters)
>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal
domain {Penicillium sp. [TaxId: 5081]}
Length = 354
Score = 156 bits (395), Expect = 1e-45
Identities = 58/216 (26%), Positives = 88/216 (40%), Gaps = 13/216 (6%)
Query: 80 GDTFRLNEDPFQFVSGSFHYFRAP-PGRWCWIMRAMRAAGLNALSTYVEWRSHEVHPGHY 138
+ +N + SG H +R P + I ++A G N +S YV+W E +PGHY
Sbjct: 10 EHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGNPGHY 69
Query: 139 HYDGHRDIEHFLQLAVEEDLYILLRPGPFICGKRDFGGFPPWLLKVAPDILLRQNHPVYQ 198
+G D++ F A E +Y+L RPGP+I + GGFP WL + D +LR + Y
Sbjct: 70 SAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQR--VDGILRTSDEAYL 127
Query: 199 RYVTRWFQELFPRIQKYLYGNDRPIILVQVENEYGSDAECDP-----AHAVWLRDLLRTY 253
+ + + I K N PIIL Q ENEY ++ ++ D R
Sbjct: 128 KATDNYASNIAATIAKAQITNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIEDHARDA 187
Query: 254 VQDKAVLYSTDGAFDAYLRCT----VDGVYSTVDFT 285
S D + +Y +
Sbjct: 188 GIV-VPFISNDAWAAGHNAPGTGAGAVDIYGHDSYP 222
>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus
thermophilus [TaxId: 274]}
Length = 393
Score = 54.7 bits (130), Expect = 5e-09
Identities = 35/172 (20%), Positives = 50/172 (29%), Gaps = 20/172 (11%)
Query: 103 PPGRWCWIMRAMRAAGLNALSTYV-EWRSHEVHPGHYHYDGHRDIEHFLQLAVEEDLYIL 161
P RW R MR AGL+ + W E PG + ++ + E L ++
Sbjct: 12 PKERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWG---WLDEAIATLAAEGLKVV 68
Query: 162 LRPGPFICGKRDFGGFPPWLLKVAPDILLR--------QNHPVYQRYVTRWFQELFPRIQ 213
L K +P L R + PVY+ R L R
Sbjct: 69 LGTPTATPPKWLVDRYPEILPVDREGRRRRFGGRRHYCFSSPVYREEARRIVTLLAER-- 126
Query: 214 KYLYGNDRPIILVQVENE---YGSDAECDPAHAVWLRDLLRTYVQDKAVLYS 262
YG + Q +NE + + P R L L
Sbjct: 127 ---YGGLEAVAGFQTDNEYGCHDTVRCYCPRCQEAFRGWLEARYGTIEALNE 175
>d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon
esculentum) [TaxId: 4081]}
Length = 370
Score = 46.2 bits (108), Expect = 3e-06
Identities = 19/179 (10%), Positives = 55/179 (30%), Gaps = 16/179 (8%)
Query: 80 GDTFRLNEDPFQFVSGSFHYF------RAPPGRWCWIMRAMRAAGLNALSTY----VEWR 129
G F LN + ++ + + + +N T+ R
Sbjct: 8 GTHFALNGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTWAFSHGGSR 67
Query: 130 SHEVHPGHYHYDGHRDIEHFLQLAVEEDLYILLRPGPFICGKRDFGGFPPWLLK---VAP 186
+ PG Y+ + ++ + A + +++++ + W ++
Sbjct: 68 PLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLVNNWDAFGGKKQYVEWAVQRGQKLT 127
Query: 187 DILLRQNHPVYQRYVTRWFQELFPRIQKYL---YGNDRPIILVQVENEYGSDAECDPAH 242
+P+ + + + + R+ Y +D I+ ++ NE ++
Sbjct: 128 SDDDFFTNPMVKGFYKNNVKVVLTRVNTITKVAYKDDPTILSWELINEPRCPSDLSGKT 186
>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 339
Score = 43.4 bits (101), Expect = 2e-05
Identities = 15/174 (8%), Positives = 44/174 (25%), Gaps = 34/174 (19%)
Query: 79 AGDTFRLNEDPFQFVSGSFH---YFRAPPGRWCWIMRAMRAAGLNALSTYVEWRSHEVHP 135
G + +N P G + + R ++ + GLN +
Sbjct: 10 GGRQYSVNGKPLLIRGGGYTPDLFLRWNETAAADKLKYVLNLGLNTVRLE---------- 59
Query: 136 GHYHYDGHRDIEHFLQLAVEEDLYILLRPGPFICGKRDFGGFPPWLLKVAPDILLRQNHP 195
+ + F +A + + + + W +V +
Sbjct: 60 -GHIEP-----DEFFDIADDLGVLTMP----------GWECCDKWEGQVNGEEKGEPWVE 103
Query: 196 VYQRYVTRWFQELFPRIQKYLYGNDRPIILVQVENEYGSDAECDPAHAVWLRDL 249
R++ + +I + +++ D + + ++
Sbjct: 104 SDYPIAKASMFSEAERLRDH-----PSVISFHIGSDFAPDRRIEQGYLDAMKAA 152
>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId:
51453]}
Length = 344
Score = 39.6 bits (91), Expect = 3e-04
Identities = 19/187 (10%), Positives = 51/187 (27%), Gaps = 25/187 (13%)
Query: 80 GDTFRLNEDPFQFVSGSFHYFRAPPGRWCW--IMRAMRAAGLNALSTYV----------- 126
G F ++ F + ++ + ++GL + +
Sbjct: 9 GTQFNIDGKVGYFAGTNCYWCSFLTNHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPG 68
Query: 127 --EWRSHEVHPGHYHYD--GHRDIEHFLQLAVEEDLYILLRPGPFICGKRDFGGFPPWLL 182
++ + G + +++ +Q A + +L +++ +
Sbjct: 69 QIWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLIIPFVNNWSDYGGINAYVNAFG 128
Query: 183 KVAPDILLRQNHPVYQRYVTRWFQELFPRIQKYLYGNDRPIILVQVENEYGSDAECDPAH 242
A + Q ++ Q + R Y N I ++ NE +
Sbjct: 129 GNATTWY---TNTAAQTQYRKYVQAVVSR-----YANSTAIFAWELGNEPRCNGCSTDVI 180
Query: 243 AVWLRDL 249
W +
Sbjct: 181 VQWATSV 187
>d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId:
39650]}
Length = 410
Score = 36.3 bits (82), Expect = 0.004
Identities = 23/193 (11%), Positives = 50/193 (25%), Gaps = 35/193 (18%)
Query: 80 GDTFRLNEDPFQFVSGSFHYFRAPPGRWCWI--------MRAMRAAGLNALSTYVEWRSH 131
G F L P+ + Y + ++A G+N L
Sbjct: 8 GGHFELQGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLKAIGVNNLRVLAVSEKS 67
Query: 132 EVHPGHYHYD----------GHRDIEHFLQLAVEEDLYILLRPGPFICGKRDFGGFPPWL 181
E++ + +++ L + D+ ++L F + W+
Sbjct: 68 EINSAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVLYFNNFWQWSGGMTQYMAWI 127
Query: 182 LKVAPDILLRQ--------------NHPVYQRYVTRWFQELFPRIQKYL---YGNDRPII 224
Q+ + +++ R+ Y +D I+
Sbjct: 128 EGEPVQDPNVTNEWEAFMAKSASFYRSEKAQQEYRKTLEKIITRVNSINGKAYVDDATIM 187
Query: 225 LVQVENEYGSDAE 237
Q+ NE
Sbjct: 188 SWQLANEPRPGNS 200
>d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel
(Mytilus edulis) [TaxId: 6550]}
Length = 350
Score = 31.6 bits (70), Expect = 0.11
Identities = 16/187 (8%), Positives = 44/187 (23%), Gaps = 33/187 (17%)
Query: 80 GDTFRLNEDPFQFVSGSFHYF----RAPPGRWCW-------IMRAMRAAGLNALSTYVEW 128
G N + + ++ + M++ G N++ ++
Sbjct: 6 GTNLNYNGHHIFLSGANQAWVNYARDFGHNQYSKGKSTFESTLSDMQSHGGNSVRVWLHI 65
Query: 129 RSH-------EVHPGHYHYDGHRDIEHFLQLAVEEDLYILLRPGPFICGKRDFGGFPPWL 181
+ D+ +L A ++ I
Sbjct: 66 EGESTPEFDNNGYVTGIDNTLISDMRAYLHAAQRHNILIFF----------TLWNGAVKQ 115
Query: 182 LKVAPDILLRQNHPVYQRYVTRWFQELFPRIQKYLYGNDRPIILVQVENEYGSDAECDPA 241
L + Q Y+ + + N++ + + NE + + +
Sbjct: 116 STHYRLNGLMVDTRKLQSYIDHALKPMANA-----LKNEKALGGWDIMNEPEGEIKPGES 170
Query: 242 HAVWLRD 248
+ D
Sbjct: 171 SSEPCFD 177
>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus
[TaxId: 1396]}
Length = 417
Score = 29.8 bits (67), Expect = 0.44
Identities = 10/86 (11%), Positives = 23/86 (26%), Gaps = 10/86 (11%)
Query: 111 MRAMRAAGLNALSTYVEWRSHEVH-PGHYHYDGHRDIEHFLQLAVEEDLYILLRPGPFIC 169
+R + G A++ W E + + + + Q + ++ C
Sbjct: 35 LRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQRF---AQSVKNAGMKMIPIISTHQC 91
Query: 170 GKRDFGGF----PPWLLKVA--PDIL 189
G P W+ +
Sbjct: 92 GGNVGDDCNVPIPSWVWNQKSDDSLY 117
>d1tg7a3 b.18.1.27 (A:849-1011) Beta-galactosidase LacA, domains 4
and 5 {Penicillium sp. [TaxId: 5081]}
Length = 163
Score = 29.0 bits (65), Expect = 0.53
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 9 LFANGRHWGRYWSEVGPQYSLFVPEEFLKV-GTNRITI 45
L+ NG +G+Y + +GPQ S VPE L GTN + +
Sbjct: 81 LYVNGYQYGKYVNNIGPQTSFPVPEGILNYHGTNWLAL 118
>d1xcra1 d.290.1.2 (A:3-315) Hypothetical protein PTD012 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 313
Score = 27.4 bits (61), Expect = 2.6
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 130 SHEVHPGHYHYDGHRD-IEHFLQLAVEEDLYILLRP 164
S GHYHYD D +E+ E LY + +P
Sbjct: 269 SRHGEGGHYHYDTTPDIVEYLGYFLPAEFLYRIDQP 304
>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), N-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 122
Score = 26.0 bits (57), Expect = 3.4
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 145 DIEHFLQLAVEEDLYILLRPG 165
DI + A+ EDL + G
Sbjct: 14 DIPAAVAQALREDLGGEVDAG 34
>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 137
Score = 26.2 bits (57), Expect = 3.8
Identities = 9/45 (20%), Positives = 13/45 (28%), Gaps = 2/45 (4%)
Query: 162 LRPGPFICGKRDFGGFPPWLLKVAPDILLRQNHPVYQRYVTRWFQ 206
G + GK GF W V + + +WF
Sbjct: 9 FGIGDLVWGK--IKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFG 51
>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 78
Score = 24.6 bits (53), Expect = 5.2
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 172 RDFGGFPPWLLK 183
R FG FPPWLL+
Sbjct: 4 RTFGAFPPWLLE 15
>d2tbva_ b.121.4.7 (A:) Tombusvirus coat protein {TBSV (Tomato bushy
stunt virus) [TaxId: 12145]}
Length = 287
Score = 25.7 bits (56), Expect = 9.4
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 254 VQDKAVLYSTDGAFDAYLRCTVDGVYSTVDFTVFKDVNVSFQAQRTRA 301
+ D + + A D +L CTV + +TV FTV R RA
Sbjct: 234 INDILAIDNVGTASDYFLNCTVSSLPATVTFTVSGVAAGILLVGRARA 281
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.142 0.471
Gapped
Lambda K H
0.267 0.0451 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,372,440
Number of extensions: 68210
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 22
Length of query: 323
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,240,546
Effective search space: 295249948
Effective search space used: 295249948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.9 bits)