BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1382
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ICO|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
pdb|3ICO|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
pdb|3ICO|C Chain C, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
pdb|3ICO|D Chain D, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
Length = 268
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 93/197 (47%), Gaps = 12/197 (6%)
Query: 28 RTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTSLPVEEAAKD 87
+ ++SK +F+ DER VP D E ++ LL +P N P+ + D
Sbjct: 80 QIEWSKVHLFWGDERYVPEDDDERNLKQARRALLNHVD-------IPSNQVHPMAASDGD 132
Query: 88 YEQTI-RSHFPYE--FKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLKERSLWV 144
+ + + YE PG P FD LLG+GP+GH SLFP P + E + V
Sbjct: 133 FGGDLDAAALAYEQVLAASAAPGDPA-PNFDVHLLGMGPEGHINSLFPHSPAVLESTRMV 191
Query: 145 APIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVDCERLPGFYINATEP 204
+ DSPKPPP R+T+T P I ++R + L + G GKAD + + + + A
Sbjct: 192 VAVDDSPKPPPRRITLTLPAIQRSREVWLLVSGPGKADAVAAAIGGADPVSVPAAGAVG- 250
Query: 205 NCNVEWYLDAEAGKLIP 221
N W LD +A +P
Sbjct: 251 RQNTLWLLDRDAAAKLP 267
>pdb|3OC6|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Smegmatis, Apo Form
Length = 248
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 30 DFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKF--PGLTEESFVPVNTSL--PVEEAA 85
D+SK I++ DER VP D E ++ LL P + + + +E AA
Sbjct: 66 DWSKVHIYWGDERFVPQDDDERNDKQAREALLDHIGIPPVNVHAMAASDGEFGDDLEAAA 125
Query: 86 KDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLKERSLWVA 145
Y Q + ++F P FD LLG+G +GH SLFPD ++E V
Sbjct: 126 AGYAQLLSANFDSSV-----------PGFDVHLLGMGGEGHVNSLFPDTDAVRETERLVV 174
Query: 146 PIKDSPKPPPERVTITFPVIHKARNIILYLIGAGK 180
+ DSPKPPP R+T+T P + +R + L + G K
Sbjct: 175 GVSDSPKPPPRRITLTLPAVQNSREVWLVVSGEAK 209
>pdb|1Y89|A Chain A, Crystal Structure Of Devb Protein
pdb|1Y89|B Chain B, Crystal Structure Of Devb Protein
Length = 238
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 16/214 (7%)
Query: 11 SCGSLIKALAEDILPKVRTDFSKWK---IFFCDERMVPYDHPESTFGVYKKLLLGKFPGL 67
S GS K L + + + + +WK ++ DER V D ES +G LL K
Sbjct: 36 SGGSTPKXLFKLLASQPYANDIQWKNLHFWWGDERCVAPDDAESNYGEANALLFSKINXP 95
Query: 68 TEESFVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHT 127
+ + + P EA + + Q P E P+ FD +LLG+G DGHT
Sbjct: 96 AQNIHRILGENEPQAEAER-FAQAXAHVIPTENGTPV---------FDWILLGVGADGHT 145
Query: 128 CSLFPDHPLLKERSLWVAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRI 187
SLFP + +L V + P+ RV+ T V+ A+ I ++GAGKA+I+++I
Sbjct: 146 ASLFPGQTDYADANLSV--VASHPESGQLRVSKTAKVLQAAKRISYLVLGAGKAEIVEQI 203
Query: 188 LVD-CERLPGFYINATEPNCNVEWYLDAEAGKLI 220
E+LP + EWYLD++A I
Sbjct: 204 HTTPAEQLPYPAAKIHSTSGVTEWYLDSDAAAKI 237
>pdb|3TX2|A Chain A, Structure Of A Probable 6-Phosphogluconolactonase From
Mycobacterium Abscessus
Length = 251
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 15/156 (9%)
Query: 30 DFSKWKIFFCDERMVPYDHPE-STFGVYKKLLLG-KFPGLTEESFVPVNTS---LPVEEA 84
D++ +F+ D+R VP PE + + ++ LL FP L +P + S ++ A
Sbjct: 66 DWTNVHVFWGDDRYVPKTDPERNAWQAWEALLEHVNFP-LRNMHAMPNSESEYGTDLDAA 124
Query: 85 AKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLKERSLWV 144
A YEQ + ++ PGQ P FD LLG+G +GH SLFP +KE V
Sbjct: 125 ALAYEQLLAANAE--------PGQ-DCPAFDVHLLGMGGEGHINSLFPHTDAVKETQRLV 175
Query: 145 APIKDSPKPPPERVTITFPVIHKARNIILYLIGAGK 180
+ DSPKPPP+R+T+T P I ++R + L + G K
Sbjct: 176 VAVPDSPKPPPQRITLTLPAIQRSREVWLVVSGEAK 211
>pdb|2J0E|A Chain A, Three Dimensional Structure And Catalytic Mechanism Of 6-
Phosphogluconolactonase From Trypanosoma Brucei
pdb|2J0E|B Chain B, Three Dimensional Structure And Catalytic Mechanism Of 6-
Phosphogluconolactonase From Trypanosoma Brucei
pdb|3EB9|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With Citrate
pdb|3EB9|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With Citrate
Length = 266
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 93/194 (47%), Gaps = 18/194 (9%)
Query: 35 KIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTS--LPVEEAAKDYEQTI 92
+ F DERMVP D +S + + +++LL P ++ P +TS P EA +
Sbjct: 70 RFFMGDERMVPADSTDSNYNMAREVLLHDIP---DDLVFPFDTSAVTPSAEATSADAMRV 126
Query: 93 RSHFPYEFKDPLP---PGQA--HWPRFDSLLLGLGPDGHTCSLFPDHPLLKERS----LW 143
+ + LP G+A P FD +LLGLG DGHT S+FP KE +
Sbjct: 127 AEAYGKQLASLLPLKSVGEAGPKVPVFDVVLLGLGSDGHTASIFPGSQAEKETDGKVVVS 186
Query: 144 VAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVD-CERLP-GFYINA 201
V ++ KP RVT++ I +ARN+I+ GA K ++ IL D + P ++
Sbjct: 187 VGFPSETMKPKVWRVTLSPATIMQARNVIVLATGAEKKWVVDGILADTAHKAPVARFLRG 246
Query: 202 TEPNCNVEWYLDAE 215
E NV + LD E
Sbjct: 247 CE--GNVSFLLDKE 258
>pdb|3E7F|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With 6-Phosphogluconic Acid
pdb|3E7F|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With 6-Phosphogluconic Acid
Length = 265
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 93/194 (47%), Gaps = 18/194 (9%)
Query: 35 KIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTS--LPVEEAAKDYEQTI 92
+ F DERMVP D +S + + +++LL P ++ P +TS P EA +
Sbjct: 69 RFFMGDERMVPADSTDSNYNMAREVLLHDIP---DDLVFPFDTSAVTPSAEATSADAMRV 125
Query: 93 RSHFPYEFKDPLP---PGQA--HWPRFDSLLLGLGPDGHTCSLFPDHPLLKERS----LW 143
+ + LP G+A P FD +LLGLG DGHT S+FP KE +
Sbjct: 126 AEAYGKQLASLLPLKSVGEAGPKVPVFDVVLLGLGSDGHTASIFPGSQAEKETDGKVVVS 185
Query: 144 VAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVD-CERLP-GFYINA 201
V ++ KP RVT++ I +ARN+I+ GA K ++ IL D + P ++
Sbjct: 186 VGFPSETMKPKVWRVTLSPATIMQARNVIVLATGAEKKWVVDGILADTAHKAPVARFLRG 245
Query: 202 TEPNCNVEWYLDAE 215
E NV + LD E
Sbjct: 246 CE--GNVSFLLDKE 257
>pdb|1VL1|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase (Tm1154)
From Thermotoga Maritima At 1.70a Resolution
Length = 232
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 27/194 (13%)
Query: 19 LAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTS 78
LAE P R F F DER VP D +S F ++L + + + V+TS
Sbjct: 64 LAEQKFPWNRIHF-----FLSDERYVPLDSDQSNFRNINEVLFSR-AKIPSGNVHYVDTS 117
Query: 79 LPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLK 138
LP+E+A + YE+ IRS +FD +LG+GPDGH S+F K
Sbjct: 118 LPIEKACEKYEREIRSA---------------TDQFDLAILGMGPDGHVASIFDLETGNK 162
Query: 139 ERSLWVAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVDCERLPGFY 198
+ + PK P RVT+TF ++ + ++ + G K + + IL D LP ++
Sbjct: 163 DNLVTFTDPSGDPKVP--RVTLTFRALNTSLYVLFLIRGKEKINRLTEILKDTP-LPAYF 219
Query: 199 INATEPNCNVEWYL 212
+ E W++
Sbjct: 220 VRGKEKTV---WFV 230
>pdb|1PBT|A Chain A, The Crystal Structure Of Tm1154, Oxidoreductase, SolDEVB
Family From Thermotoga Maritima
Length = 244
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 27/194 (13%)
Query: 19 LAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTS 78
LAE P R F F DER VP D +S F ++L + + + V+TS
Sbjct: 74 LAEQKFPWNRIHF-----FLSDERYVPLDSDQSNFRNINEVLFSR-AKIPSGNVHYVDTS 127
Query: 79 LPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLK 138
LP+E+A + YE+ IRS +FD +LG GPDGH S+F K
Sbjct: 128 LPIEKACEKYEREIRSA---------------TDQFDLAILGXGPDGHVASIFDLETGNK 172
Query: 139 ERSLWVAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVDCERLPGFY 198
+ + PK P RVT+TF ++ + ++ + G K + + IL D LP ++
Sbjct: 173 DNLVTFTDPSGDPKVP--RVTLTFRALNTSLYVLFLIRGKEKINRLTEILKDTP-LPAYF 229
Query: 199 INATEPNCNVEWYL 212
+ E W++
Sbjct: 230 VRGKEKTV---WFV 240
>pdb|3CH7|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Leishmania Braziliensis
Length = 266
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 14/199 (7%)
Query: 2 NLPGVLSCQSCGSLIKALAEDILPKVRTDFSKWKIFFC--DERMVPYDHPESTFGVYKKL 59
++P VL+ S GS K L E++ K + + F DER++ D +S F + K
Sbjct: 35 SVPVVLAL-SGGSTPKRLYEELHEKDLALLQQHAVQFILGDERLLSEDDEQSNFSMATKA 93
Query: 60 LLGKFPG---LTEESFVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHW----- 111
LL P ++ + + TS E+ D + + + + LP Q +
Sbjct: 94 LLRDVPSSDVISIDRRAALATSKD-EKGGLDGAWAVAQDYEVKLLNCLPCKQINGTAKSV 152
Query: 112 PRFDSLLLGLGPDGHTCSLFPDHPLLKERSLWVAPIKDSPKPPPE--RVTITFPVIHKAR 169
P D +LLG G DGHT S+FPD + V+ SP P+ RVT++ VI A+
Sbjct: 153 PVVDIVLLGFGSDGHTASIFPDSVAATDEEHVVSVSFPSPTMSPKVWRVTLSKTVIQYAK 212
Query: 170 NIILYLIGAGKADIIKRIL 188
++++ G K +++ +L
Sbjct: 213 HVVVLAAGKDKNWVVRGVL 231
>pdb|3CSS|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Leishmania Guyanensis
Length = 267
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 14/199 (7%)
Query: 2 NLPGVLSCQSCGSLIKALAEDILPKVRTDFSKWKIFFC--DERMVPYDHPESTFGVYKKL 59
++P VL+ S GS K L E++ K + + F DER++ D +S F + K
Sbjct: 36 SVPVVLAL-SGGSTPKRLYEELHEKDLALLQQHAVQFILGDERLLSEDDEQSNFSMATKA 94
Query: 60 LLGKFPG---LTEESFVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHW----- 111
LL P ++ + + TS E+ D + + + + LP Q +
Sbjct: 95 LLRDVPSSDVISIDRRAALATSKD-EKGGLDGAWAVAQDYEVKLLNCLPCKQINGTAKSV 153
Query: 112 PRFDSLLLGLGPDGHTCSLFPDHPLLKERSLWVAPIKDSPKPPPE--RVTITFPVIHKAR 169
P D +LLG G DGHT S+FPD + V+ SP P+ RVT++ VI A+
Sbjct: 154 PVVDIVLLGFGSDGHTASIFPDSVAATDEEHVVSVSFPSPTMSPKVWRVTLSKTVIQYAK 213
Query: 170 NIILYLIGAGKADIIKRIL 188
++++ G K +++ +L
Sbjct: 214 HVVVLAAGKDKNWVVRGVL 232
>pdb|3LHI|A Chain A, Crystal Structure Of Putative 6-
Phosphogluconolactonase(Yp_207848.1) From Neisseria
Gonorrhoeae Fa 1090 At 1.33 A Resolution
Length = 232
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 21/193 (10%)
Query: 22 DILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTSLPV 81
+ L + D+ I DER+VP +H +S G+ ++ LL ++P V
Sbjct: 51 NALSQKDLDWKNVGITLADERIVPTNHADSNTGLVREYLLKNKAAAA--VWIP-----XV 103
Query: 82 EEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLK--- 138
E+ + E + Y K H+ + D L+LG G DGHT S+FP P +
Sbjct: 104 EDGKTETELHPDAVVDYALK--------HYKQPDVLILGXGNDGHTASIFPKAPQFQTAI 155
Query: 139 ERSLWVAPIKDSP-KPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVDCERL--P 195
+ S VA + +P P ER++ T I ++ L + G K + + R
Sbjct: 156 DGSAGVALVHTTPVTAPHERISXTLDAIAHTGHVFLAIQGEEKKAVFDQAAQGENREYPI 215
Query: 196 GFYINATEPNCNV 208
+N NC+V
Sbjct: 216 SLVLNHQGVNCHV 228
>pdb|3LWD|A Chain A, Crystal Structure Of Putative 6-Phosphogluconolactonase
(Yp_574786.1) From Chromohalobacter Salexigens Dsm 3043
At 1.88 A Resolution
Length = 226
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 78/182 (42%), Gaps = 25/182 (13%)
Query: 18 ALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNT 77
+LA LP R D + DER V D +S + ++ LL E F P+ T
Sbjct: 51 SLAAKALPWARVD-----VTLADERWVTADDADSNARLVRETLL--VGPAAEACFHPLTT 103
Query: 78 SLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLL 137
EA +T+ E + LP WP +++LG G DGHT SLFPD L
Sbjct: 104 DDDTPEAGV---ETV-----AERLESLP-----WP-ASAVILGXGGDGHTASLFPDSEQL 149
Query: 138 KE--RSLWVAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILV--DCER 193
+ A + +P P R+T++ + A +L++ G K ++ L D +
Sbjct: 150 ATALETTSAAVVVHAPSVPQARITLSASRLADAGLHVLHITGNDKRRVLAEALAGDDVRQ 209
Query: 194 LP 195
LP
Sbjct: 210 LP 211
>pdb|3NWP|A Chain A, Crystal Structure Of A 6-Phosphogluconolactonase
(Sbal_2240) From Shewanella Baltica Os155 At 1.40 A
Resolution
pdb|3NWP|B Chain B, Crystal Structure Of A 6-Phosphogluconolactonase
(Sbal_2240) From Shewanella Baltica Os155 At 1.40 A
Resolution
Length = 233
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 109 AHWPR-FDSLLLGLGPDGHTCSLFPDHPLLKERSLWVAPIKDSPKP---PPERVTITFPV 164
+++PR FD ++LG G DGHTCS FP L E +L + + P P R+T++
Sbjct: 124 SNFPRPFDVVVLGXGNDGHTCSWFPCSAEL-ENALTTQALCVATNPTTAPHGRITLSKSA 182
Query: 165 IHKARNIILYLIGAGKADIIKRIL 188
I +R I L+L+G K + ++ L
Sbjct: 183 ILNSRQIYLHLVGEQKLSVYRQAL 206
>pdb|3E15|A Chain A, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|B Chain B, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|C Chain C, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|D Chain D, 6-Phosphogluconolactonase From Plasmodium Vivax
Length = 312
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 75/203 (36%), Gaps = 48/203 (23%)
Query: 18 ALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNT 77
AL +DI + D SK F DER DH S + K L E+ + P +T
Sbjct: 80 ALVKDI----KIDTSKLIFFIIDERYKRDDHKFSNYNNIKFLFESLKINEKEQLYRP-DT 134
Query: 78 SLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFP----- 132
S + E +DY + I++ + + D +LG G D H SLFP
Sbjct: 135 SKNIVECVRDYNEKIKNXVK------------KYTKVDIAILGXGSDFHIASLFPNIFFN 182
Query: 133 -------DHPLLKERSLWVAPIKDSPKPPP-------------------ERVTITFPVIH 166
+ + E S+ VA D+ +R+T++ ++
Sbjct: 183 IYXNNYQNSYIYDESSIKVANSNDTSDNDNLDLLKEYVYFTTTNNFDVRKRITVSLDLLG 242
Query: 167 KARNIILYLIGAGKADIIKRILV 189
A + I L K D+ K L+
Sbjct: 243 NASSKIFLLNSTDKLDLWKNXLL 265
>pdb|3ZWM|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|C Chain C, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|D Chain D, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|E Chain E, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|F Chain F, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|G Chain G, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|H Chain H, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWN|A Chain A, Crystal Structure Of Aplysia Cyclase Complexed With
Substrate Ngd And Product Cgdpr
pdb|3ZWN|B Chain B, Crystal Structure Of Aplysia Cyclase Complexed With
Substrate Ngd And Product Cgdpr
pdb|3ZWP|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|C Chain C, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|D Chain D, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|E Chain E, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|F Chain F, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|G Chain G, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|H Chain H, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWV|A Chain A, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|B Chain B, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|C Chain C, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|D Chain D, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|E Chain E, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|F Chain F, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|G Chain G, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|H Chain H, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|A Chain A, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|B Chain B, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|C Chain C, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|D Chain D, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|E Chain E, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|F Chain F, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|G Chain G, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|H Chain H, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWX|A Chain A, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|B Chain B, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|C Chain C, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|D Chain D, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|E Chain E, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|F Chain F, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|G Chain G, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|H Chain H, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWY|A Chain A, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|B Chain B, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|C Chain C, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|D Chain D, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|E Chain E, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|F Chain F, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|G Chain G, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|H Chain H, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
Length = 260
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 34/136 (25%)
Query: 22 DILPKVRTDFSK-WKIFFCDERMVPYDHP-ESTFGVYKKLLLGKFPGLTEESFVPVNTSL 79
DILP+VR+D S WK FF + + +P + G YK + + +P N +
Sbjct: 27 DILPRVRSDCSALWKDFF---KAFSFKNPCDLDLGSYKDFF------TSAQQQLPKNKVM 77
Query: 80 ---PVEEAAKDYEQTIRSHFPYEFKDPLPP---------GQAHWPRFDSLLLGLGPDGHT 127
V + A DY T R + E D LP GQ P F+ + PD T
Sbjct: 78 FWSGVYDEAHDYANTGRKYITLE--DTLPGYMLNSLVWCGQRANPGFNEKVC---PDFKT 132
Query: 128 CSLFPDHPLLKERSLW 143
C P+ S W
Sbjct: 133 C------PVQARESFW 142
>pdb|1R0S|A Chain A, Crystal Structure Of Adp-Ribosyl Cyclase Glu179ala Mutant
pdb|1R0S|B Chain B, Crystal Structure Of Adp-Ribosyl Cyclase Glu179ala Mutant
Length = 258
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 34/136 (25%)
Query: 22 DILPKVRTDFSK-WKIFFCDERMVPYDHP-ESTFGVYKKLLLGKFPGLTEESFVPVNTSL 79
DILP+VR+D S WK FF + + +P + G YK + + +P N +
Sbjct: 25 DILPRVRSDCSALWKDFF---KAFSFKNPCDLDLGSYKDFF------TSAQQQLPKNKVM 75
Query: 80 ---PVEEAAKDYEQTIRSHFPYEFKDPLPP---------GQAHWPRFDSLLLGLGPDGHT 127
V + A DY T R + E D LP GQ P F+ + PD T
Sbjct: 76 FWSGVYDEAHDYANTGRKYITLE--DTLPGYMLNSLVWCGQRANPGFNEKVC---PDFKT 130
Query: 128 CSLFPDHPLLKERSLW 143
C P+ S W
Sbjct: 131 C------PVQARESFW 140
>pdb|3ZWO|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|C Chain C, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|D Chain D, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|E Chain E, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|F Chain F, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|G Chain G, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|H Chain H, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
Length = 259
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 34/136 (25%)
Query: 22 DILPKVRTDFSK-WKIFFCDERMVPYDHP-ESTFGVYKKLLLGKFPGLTEESFVPVNTSL 79
DILP+VR+D S WK FF + + +P + G YK + + +P N +
Sbjct: 26 DILPRVRSDCSALWKDFF---KAFSFKNPCDLDLGSYKDFF------TSAQQQLPKNKVM 76
Query: 80 ---PVEEAAKDYEQTIRSHFPYEFKDPLPP---------GQAHWPRFDSLLLGLGPDGHT 127
V + A DY T R + E D LP GQ P F+ + PD T
Sbjct: 77 FWSGVYDEAHDYANTGRKYITLE--DTLPGYMLNSLVWCGQRANPGFNEKVC---PDFKT 131
Query: 128 CSLFPDHPLLKERSLW 143
C P+ S W
Sbjct: 132 C------PVQARESFW 141
>pdb|3I9K|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad
pdb|3I9K|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad
pdb|3I9L|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
N1-Cidpr
pdb|3I9L|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
N1-Cidpr
Length = 258
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 34/136 (25%)
Query: 22 DILPKVRTDFSK-WKIFFCDERMVPYDHP-ESTFGVYKKLLLGKFPGLTEESFVPVNTSL 79
DILP+VR+D S WK FF + + +P + G YK + + +P N +
Sbjct: 25 DILPRVRSDCSALWKDFF---KAFSFKNPCDLDLGSYKDFF------TSAQQQLPKNKVM 75
Query: 80 ---PVEEAAKDYEQTIRSHFPYEFKDPLPP---------GQAHWPRFDSLLLGLGPDGHT 127
V + A DY T R + E D LP GQ P F+ + PD T
Sbjct: 76 FWSGVYDEAHDYANTGRKYITLE--DTLPGYMLNSLVWCGQRANPGFNEKVC---PDFKT 130
Query: 128 CSLFPDHPLLKERSLW 143
C P+ S W
Sbjct: 131 C------PVQARESFW 140
>pdb|1LBE|A Chain A, Aplysia Adp Ribosyl Cyclase
pdb|1LBE|B Chain B, Aplysia Adp Ribosyl Cyclase
pdb|1R12|A Chain A, Native Aplysia Adp Ribosyl Cyclase
pdb|1R12|B Chain B, Native Aplysia Adp Ribosyl Cyclase
pdb|1R15|A Chain A, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|B Chain B, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|C Chain C, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|D Chain D, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|E Chain E, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|F Chain F, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|G Chain G, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|H Chain H, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R16|A Chain A, Aplysia Adp Ribosyl Cyclase With Bound Pyridylcarbinol And
R5p
pdb|1R16|B Chain B, Aplysia Adp Ribosyl Cyclase With Bound Pyridylcarbinol And
R5p
pdb|3I9J|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With A
Substrate Analog And A Product Nicotinamide
pdb|3I9J|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With A
Substrate Analog And A Product Nicotinamide
pdb|3I9O|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ribo-2'f-Adp Ribose
pdb|3I9O|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ribo-2'f-Adp Ribose
Length = 258
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 34/136 (25%)
Query: 22 DILPKVRTDFSK-WKIFFCDERMVPYDHP-ESTFGVYKKLLLGKFPGLTEESFVPVNTSL 79
DILP+VR+D S WK FF + + +P + G YK + + +P N +
Sbjct: 25 DILPRVRSDCSALWKDFF---KAFSFKNPCDLDLGSYKDFF------TSAQQQLPKNKVM 75
Query: 80 ---PVEEAAKDYEQTIRSHFPYEFKDPLPP---------GQAHWPRFDSLLLGLGPDGHT 127
V + A DY T R + E D LP GQ P F+ + PD T
Sbjct: 76 FWSGVYDEAHDYANTGRKYITLE--DTLPGYMLNSLVWCGQRANPGFNEKVC---PDFKT 130
Query: 128 CSLFPDHPLLKERSLW 143
C P+ S W
Sbjct: 131 C------PVQARESFW 140
>pdb|2HPS|A Chain A, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri
Length = 186
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 61 LGKFPGL---TEESFVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSL 117
LG PG+ EE+ V SL + + I+S Y+ D G P F +
Sbjct: 68 LGLAPGVRISVEEAAVNATDSLLKXKGEEKAXAVIQSLIXYDCIDTDKDGYVSLPEFKAF 127
Query: 118 LLGLGPD 124
L +GPD
Sbjct: 128 LQAVGPD 134
>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed
With Nicotinamide Adenine Dinucleotide (Nad), And Zinc
pdb|1CDO|B Chain B, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed
With Nicotinamide Adenine Dinucleotide (Nad), And Zinc
Length = 374
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 1 MNLPGVLSCQSCGSLIKALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLL 60
+ L V+ C S G+ + +A D+ P F K K+F + + P DH E V K+
Sbjct: 204 VGLAAVMGCHSAGAK-RIIAVDLNPD---KFEKAKVFGATDFVNPNDHSEPISQVLSKMT 259
Query: 61 LG 62
G
Sbjct: 260 NG 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.141 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,011,050
Number of Sequences: 62578
Number of extensions: 413596
Number of successful extensions: 772
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 741
Number of HSP's gapped (non-prelim): 22
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)