Query psy1382
Match_columns 254
No_of_seqs 119 out of 1080
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 21:17:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1382.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1382hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01198 pgl 6-phosphoglucono 100.0 1E-59 2.2E-64 416.2 20.8 204 2-220 26-233 (233)
2 KOG3147|consensus 100.0 5.1E-57 1.1E-61 394.5 20.7 207 2-222 38-250 (252)
3 PLN02360 probable 6-phosphoglu 100.0 2.6E-56 5.7E-61 401.9 21.0 215 2-223 40-264 (268)
4 PTZ00285 glucosamine-6-phospha 100.0 1.4E-55 3E-60 394.0 18.9 201 2-224 31-251 (253)
5 cd01400 6PGL 6PGL: 6-Phosphogl 100.0 2.7E-55 6E-60 384.5 20.4 195 2-212 21-219 (219)
6 COG0363 NagB 6-phosphogluconol 100.0 3.1E-55 6.7E-60 388.5 17.0 197 3-221 31-237 (238)
7 TIGR00502 nagB glucosamine-6-p 100.0 4.8E-52 1E-56 372.2 18.4 198 3-222 32-249 (259)
8 PRK09762 galactosamine-6-phosp 100.0 4.1E-52 8.9E-57 367.5 16.4 192 2-214 26-232 (232)
9 PF01182 Glucosamine_iso: Gluc 100.0 3.1E-51 6.8E-56 354.0 12.7 176 2-189 19-199 (199)
10 PRK12358 putative 6-phosphoglu 100.0 2.6E-50 5.6E-55 357.4 16.4 192 2-221 26-238 (239)
11 PRK02122 glucosamine-6-phospha 100.0 1.1E-48 2.4E-53 388.3 19.5 202 2-225 57-280 (652)
12 cd01399 GlcN6P_deaminase GlcN6 100.0 1.4E-42 3.1E-47 303.8 17.8 197 3-220 18-232 (232)
13 PRK00443 nagB glucosamine-6-ph 100.0 4.4E-42 9.6E-47 306.6 16.8 198 4-222 33-249 (261)
14 KOG3148|consensus 100.0 1E-39 2.2E-44 276.0 8.4 199 4-223 33-250 (273)
15 cd00458 SugarP_isomerase Sugar 100.0 4.2E-36 9.1E-41 253.5 13.2 148 2-212 18-169 (169)
16 PF04198 Sugar-bind: Putative 96.9 0.0011 2.4E-08 59.6 4.0 178 4-220 52-253 (255)
17 COG2390 DeoR Transcriptional r 96.8 0.015 3.2E-07 54.2 11.2 183 6-220 116-316 (321)
18 PRK15418 transcriptional regul 93.0 0.24 5.3E-06 45.9 6.3 52 155-220 262-313 (318)
19 PF01171 ATP_bind_3: PP-loop f 69.6 8.9 0.00019 32.1 4.8 97 6-128 2-106 (182)
20 TIGR00730 conserved hypothetic 58.1 18 0.0004 30.7 4.6 40 3-43 96-138 (178)
21 COG0037 MesJ tRNA(Ile)-lysidin 57.2 35 0.00077 30.4 6.6 41 4-46 22-62 (298)
22 cd00293 USP_Like Usp: Universa 40.2 90 0.0019 22.8 5.5 36 6-42 2-38 (130)
23 KOG3363|consensus 36.8 21 0.00045 30.4 1.5 19 112-130 110-128 (196)
24 PF03641 Lysine_decarbox: Poss 30.1 47 0.001 26.6 2.5 46 5-57 55-104 (133)
25 PF00098 zf-CCHC: Zinc knuckle 25.8 39 0.00084 17.8 0.9 12 121-132 6-17 (18)
26 KOG0452|consensus 22.9 1.3E+02 0.0029 30.7 4.6 35 52-90 729-764 (892)
27 cd01713 PAPS_reductase This do 22.7 88 0.0019 24.6 2.9 38 5-43 1-38 (173)
28 cd01992 PP-ATPase N-terminal d 21.8 4.4E+02 0.0095 21.4 7.5 37 5-43 1-39 (185)
29 KOG1800|consensus 21.5 1.3E+02 0.0028 29.3 4.1 23 113-135 108-130 (468)
No 1
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=100.00 E-value=1e-59 Score=416.21 Aligned_cols=204 Identities=37% Similarity=0.583 Sum_probs=186.7
Q ss_pred CCCCeEEEEcCCchHHHHHHhhCcCCCCCCCCeEEEEcceeccCCCCchhHHHHHHHHhccCCCCCCCCcEEcCCCCC-C
Q psy1382 2 NLPGVLSCQSCGSLIKALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTSL-P 80 (254)
Q Consensus 2 ~~~~~~iaLsgGstp~~ly~~~L~~~~idws~v~vf~~DEr~Vp~d~~~Sn~~~~~~~ll~~~~~i~~~~v~~~~~~~-d 80 (254)
+++.++|||||||||+.+|+. |++.+++|+||+|||+|||+||++|++||+++++++||++++ ++++|+|++++.. +
T Consensus 26 ~~~~~~lalsGGstp~~~y~~-L~~~~i~w~~v~~f~~DER~Vp~~~~~SN~~~~~~~Ll~~~~-i~~~~i~~~~~~~~~ 103 (233)
T TIGR01198 26 ERGQFSLALSGGRSPIALLEA-LAAQPLDWSRIHLFLGDERYVPLDHADSNTGLAREALLDRVA-IPASNIHPMPTELSD 103 (233)
T ss_pred hcCcEEEEECCCccHHHHHHH-HhhCCCCcceEEEEEecccccCCCCccchHHHHHHHHhccCC-CChhheeeCCCccCC
Confidence 467899999999999999999 887799999999999999999999999999999999999999 9999999999876 7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCceeEEEecccCCcceeecCCCCCCCccCceeEeecCCCCCCCCceEEe
Q psy1382 81 VEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLKERSLWVAPIKDSPKPPPERVTI 160 (254)
Q Consensus 81 ~~~~a~~Ye~~I~~~~~~~~~~~~~~~~~~~p~fDl~lLGiG~DGHiAslfPg~~~l~~~~~~v~~~~~~~~~P~~riTl 160 (254)
++++|++|+++|++.++. . ..|.||+++||||+||||||||||++.+.+.+.++....++|++|++||||
T Consensus 104 ~~~~a~~y~~~i~~~~~~--------~--~~p~fDl~lLGmG~DGHtASlFPg~~~l~~~~~~~~~~~~~~~~p~~RITl 173 (233)
T TIGR01198 104 IEEAAELYEQELAAAFQP--------I--VFPVFDLLLLGMGPDGHTASLFPHTPALQETERLVTVLTKSPKPPHERITL 173 (233)
T ss_pred HHHHHHHHHHHHHHhhcc--------c--CCCcccEEEECCcCCccceeCCCCChhhccccceEEeecCCCCCCCCcEEe
Confidence 999999999999987531 0 346899999999999999999999998877777766666778999999999
Q ss_pred CHHHHHhcCcEEEEEcCccHHHHHHHHHh-C--CCCCcccccccccCCCeEEEEEehhhhCCC
Q psy1382 161 TFPVIHKARNIILYLIGAGKADIIKRILV-D--CERLPGFYINATEPNCNVEWYLDAEAGKLI 220 (254)
Q Consensus 161 t~~~i~~Ak~vill~~G~~Ka~al~~~l~-~--~~~~Pas~l~~~~~~~~v~~~lD~~Aa~~l 220 (254)
|++.|++||+|+|+++|++|+++++++++ + +.++|++.++.| ++++||+|++||+.|
T Consensus 174 t~~~i~~a~~i~~lv~G~~Ka~~~~~~l~~~~~~~~~Pas~l~~~---~~~~~~~D~~Aa~~l 233 (233)
T TIGR01198 174 TLPAINAARKVFLLIAGEEKRNALAEALAVEAEPYPLPAAGVLHS---GKTLWLLDYAAARKL 233 (233)
T ss_pred cHHHHhcCCeEEEEEEChHHHHHHHHHHhcCCCcccCCHhHcCCC---CcEEEEEChHhhhcC
Confidence 99999999999999999999999999998 5 458999999988 899999999999765
No 2
>KOG3147|consensus
Probab=100.00 E-value=5.1e-57 Score=394.50 Aligned_cols=207 Identities=45% Similarity=0.828 Sum_probs=192.4
Q ss_pred CCCCeEEEEcCCchHHHHHHhhCcC---CCCCCCCeEEEEcceeccCCCCchhHHHHHHHHhccCCCCCCCCcEEcCCCC
Q psy1382 2 NLPGVLSCQSCGSLIKALAEDILPK---VRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTS 78 (254)
Q Consensus 2 ~~~~~~iaLsgGstp~~ly~~~L~~---~~idws~v~vf~~DEr~Vp~d~~~Sn~~~~~~~ll~~~~~i~~~~v~~~~~~ 78 (254)
+++.|+|+|||||.+..+++. |.. ..++|++|+|||+|||+||.+|++|||+.++++||++++ ++..|||+++..
T Consensus 38 ~~g~F~i~lSGGSLi~~L~~~-l~~~~~~~i~w~kW~if~~DER~Vp~~~~dSNyg~~~~~~l~~v~-~~~~~i~~id~~ 115 (252)
T KOG3147|consen 38 KRGRFTLALSGGSLIQVLSKL-LESPYQDDIDWSKWHIFFVDERVVPLDDPDSNYGLAKRHFLSKVP-IPHYNIYPIDES 115 (252)
T ss_pred cCCeEEEEEcCCcHHHHHHHH-hcccccCCCCccceEEEEEeccccCCCCCcccHHHHHHhhhhhCC-CCcCcEEECChh
Confidence 456899999999999999999 555 389999999999999999999999999999999999999 999999999987
Q ss_pred C--CHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCceeEEEecccCCcceeecCCCCCCCccCceeEeecCCCCCCCCc
Q psy1382 79 L--PVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLKERSLWVAPIKDSPKPPPE 156 (254)
Q Consensus 79 ~--d~~~~a~~Ye~~I~~~~~~~~~~~~~~~~~~~p~fDl~lLGiG~DGHiAslfPg~~~l~~~~~~v~~~~~~~~~P~~ 156 (254)
. +++++++.|++.+.+... .+ ..|.|||+|||||+||||||||||+..+.++..||+.+.+||++|++
T Consensus 116 L~~~~~~~a~~ye~~l~~~v~--------~~--s~p~FDL~LLG~GpDGHtaSLFP~~~~l~e~~~wV~~itdSPkpPp~ 185 (252)
T KOG3147|consen 116 LIADAEEAADLYEKELKALVA--------ND--SFPVFDLLLLGMGPDGHTASLFPGHPLLNEKLKWVVPITDSPKPPPK 185 (252)
T ss_pred hccCHHHHHHHHHHHHHHHhc--------cC--CCcceeEEEeccCCCCCeeecCCCchhhhcccCEEEEeCCCCCCCCc
Confidence 4 699999999999998763 11 36889999999999999999999998888999999999999999999
Q ss_pred eEEeCHHHHHhcCcEEEEEcCccHHHHHHHHHhC-CCCCcccccccccCCCeEEEEEehhhhCCCCC
Q psy1382 157 RVTITFPVIHKARNIILYLIGAGKADIIKRILVD-CERLPGFYINATEPNCNVEWYLDAEAGKLIPR 222 (254)
Q Consensus 157 riTlt~~~i~~Ak~vill~~G~~Ka~al~~~l~~-~~~~Pas~l~~~~~~~~v~~~lD~~Aa~~l~~ 222 (254)
|||+|+++|++|++++|+++|+.||++++.++.. ...+|+++++++ .++++||+|++|+++|+.
T Consensus 186 RITlTLPvIn~A~~v~fvv~G~~Ka~iv~~i~~~~~~~lPaa~V~~~--~~~l~WflD~~A~~~l~~ 250 (252)
T KOG3147|consen 186 RITLTLPVINHAKNVAFVVCGASKAEIVKAILEDKEKKLPAALVNPA--KGKLVWFLDDDAASKLPV 250 (252)
T ss_pred cEEEehHHhhhhhceEEEEeCcchhHhHHHHHhcccccCCchheecc--CCeEEEEEchHHhcCCCC
Confidence 9999999999999999999999999999999998 679999999986 699999999999999964
No 3
>PLN02360 probable 6-phosphogluconolactonase
Probab=100.00 E-value=2.6e-56 Score=401.92 Aligned_cols=215 Identities=37% Similarity=0.625 Sum_probs=183.0
Q ss_pred CCCCeEEEEcCCchHHHHHHhhCcCC----CCCCCCeEEEEcceeccCCCCchhHHHHHHHHhccCCCCCCCCcEEcCCC
Q psy1382 2 NLPGVLSCQSCGSLIKALAEDILPKV----RTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNT 77 (254)
Q Consensus 2 ~~~~~~iaLsgGstp~~ly~~~L~~~----~idws~v~vf~~DEr~Vp~d~~~Sn~~~~~~~ll~~~~~i~~~~v~~~~~ 77 (254)
+++.++|||||||++. +|.. |++. +++|+||+|||+|||+||++|++||++++|++||++++ +++.|||++++
T Consensus 40 ~~~~~~lalsGGS~~~-~~~~-L~~~~~~~~idW~~v~~f~~DER~Vp~~~~~SN~~~~r~~Ll~~~~-i~~~~i~~~~~ 116 (268)
T PLN02360 40 ERGVFAIALSGGSLIS-FMGK-LCEAPYNKTVDWAKWYIFWADERVVAKNHADSNYKLAKDGLLSKVP-VVPSHVYSIND 116 (268)
T ss_pred hCCcEEEEECCCCHHH-HHHH-HhccccccCCCCceEEEEeeecccCCCCCcchHHHHHHHHhhccCC-CChhhcccCCC
Confidence 3568999999999765 7777 6653 69999999999999999999999999999999999999 99999999998
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCceeEEEecccCCcceeecCCCCCCCccCceeEeecCCCCCCCCce
Q psy1382 78 SLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLKERSLWVAPIKDSPKPPPER 157 (254)
Q Consensus 78 ~~d~~~~a~~Ye~~I~~~~~~~~~~~~~~~~~~~p~fDl~lLGiG~DGHiAslfPg~~~l~~~~~~v~~~~~~~~~P~~r 157 (254)
..+++++|++|+++|++..+..... .......|+||++|||||+||||||||||++.+.+...+++.+.++|++|++|
T Consensus 117 ~~~~~~~a~~ye~~l~~~~~~~~~~--~~~~~~~p~fDlvlLGmG~DGHtASlFPg~~~l~~~~~~v~~~~~~~~~p~~R 194 (268)
T PLN02360 117 TVTAEEAATDYEFAIRQLVKTRTIG--VSDISDCPKFDLILLGMGSDGHVASLFPNHPALEEKDDWVTFITDSPKPPPER 194 (268)
T ss_pred CCCHHHHHHHHHHHHHHHhhccccc--cccccCCCcccEEEEccCCCCceeccCCCCchhhhccceEEeecCCCCCCCce
Confidence 7789999999999998753100000 00001346899999999999999999999987766656766666678899999
Q ss_pred EEeCHHHHHhcCcEEEEEcCccHHHHHHHHHh----C--CCCCcccccccccCCCeEEEEEehhhhCCCCCC
Q psy1382 158 VTITFPVIHKARNIILYLIGAGKADIIKRILV----D--CERLPGFYINATEPNCNVEWYLDAEAGKLIPRN 223 (254)
Q Consensus 158 iTlt~~~i~~Ak~vill~~G~~Ka~al~~~l~----~--~~~~Pas~l~~~~~~~~v~~~lD~~Aa~~l~~~ 223 (254)
||||+++|++||+|+|+++|++|+++|++++. + +.++|++.|+.| .++++||+|++||+.|...
T Consensus 195 ITlt~~~i~~A~~i~llv~G~~Ka~al~~~l~~~~~~~~~~~~Pas~l~~~--~~~~~w~~D~~Aa~~l~~~ 264 (268)
T PLN02360 195 ITFTLPVINSASNVAVVATGESKANAVHLAIDDVTEGPDAPSLPARMVQPT--KGKLVWFLDKPAASKLDGF 264 (268)
T ss_pred EEEcHHHHhcCCeEEEEEeCccHHHHHHHHHhhccCCCCcccCChhhhcCC--CCcEEEEECHHHHhhCccc
Confidence 99999999999999999999999999999995 4 468999999987 4599999999999998753
No 4
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=100.00 E-value=1.4e-55 Score=393.98 Aligned_cols=201 Identities=25% Similarity=0.291 Sum_probs=179.7
Q ss_pred CCCCeEEEEcCCchHHHHHHhhCcCC----CCCCCCeEEEEcceec-cCCCCchhHHHHHHHHhccCCCCCCCCcEEcCC
Q psy1382 2 NLPGVLSCQSCGSLIKALAEDILPKV----RTDFSKWKIFFCDERM-VPYDHPESTFGVYKKLLLGKFPGLTEESFVPVN 76 (254)
Q Consensus 2 ~~~~~~iaLsgGstp~~ly~~~L~~~----~idws~v~vf~~DEr~-Vp~d~~~Sn~~~~~~~ll~~~~~i~~~~v~~~~ 76 (254)
+++.++|+||||+||+.+|+. |++. +++|+||+||++|||+ ||.+|++||+++++++||++++ ||++|+|+++
T Consensus 31 ~~~~~~i~lsgG~tP~~~y~~-L~~~~~~~~i~w~~v~if~~DEr~~Vp~~~~~Sn~~~~~~~l~~~~~-ip~~~~~~~~ 108 (253)
T PTZ00285 31 SDRPFVLGLPTGSTPLPTYQE-LIRAYREGRVSFSNVVTFNMDEYVGLPRDHPQSYHYFMKENFFDHVD-IKEENRHILN 108 (253)
T ss_pred cCCCeEEEEcCCCCHHHHHHH-HHHHHhhcCCchhHeEEECCcEEecCCCCchHHHHHHHHHHHhccCC-CCHhhEEcCC
Confidence 367899999999999999999 7753 7999999999999999 9999999999999999999999 9999999999
Q ss_pred CC-CCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCceeEEEecccCCcceeecCCCCCCCccCceeEee---------
Q psy1382 77 TS-LPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLKERSLWVAP--------- 146 (254)
Q Consensus 77 ~~-~d~~~~a~~Ye~~I~~~~~~~~~~~~~~~~~~~p~fDl~lLGiG~DGHiAslfPg~~~l~~~~~~v~~--------- 146 (254)
+. .+++++|++|+++|++.+ +||+++||||+||||||||||+++.. .++++..
T Consensus 109 ~~~~~~~~~~~~y~~~i~~~~----------------~~Dl~lLG~G~DGH~AslfP~~~~~~-~~~~v~~~~~t~~~~~ 171 (253)
T PTZ00285 109 GTAPDLEEECRRYEEKIRAVG----------------GIDLFLAGIGTDGHIAFNEPGSSLDS-RTRVKSLNQETIDANA 171 (253)
T ss_pred CCCcCHHHHHHHHHHHHHHhC----------------CCcEEEeCCCCCCceeecCCCCccCC-ceEEEECCHHHHHHHh
Confidence 76 589999999999999764 79999999999999999999998643 3334321
Q ss_pred ---cCCCCCCCCceEEeCHHHHHhcCcEEEEEcCccHHHHHHHHHhC--CCCCcccccccccCCCeEEEEEehhhhCCCC
Q psy1382 147 ---IKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVD--CERLPGFYINATEPNCNVEWYLDAEAGKLIP 221 (254)
Q Consensus 147 ---~~~~~~~P~~riTlt~~~i~~Ak~vill~~G~~Ka~al~~~l~~--~~~~Pas~l~~~~~~~~v~~~lD~~Aa~~l~ 221 (254)
..++|++|++|||||++.|++||+|+|+++|++|+++|++++++ +..+|+++|+.| ++++||+|++||+.|.
T Consensus 172 ~~~~~~~~~~p~~riTlt~~~i~~a~~i~l~~~G~~K~~~l~~~l~~~~~~~~Pas~l~~~---~~~~~~~D~~Aa~~l~ 248 (253)
T PTZ00285 172 RFFGNDISKVPTMALTVGIRTIMEAREVLLLATGASKAIAVARCVEGGVTHMCPASALQMH---PAAVLCLDEDATLELK 248 (253)
T ss_pred hhccCCcCCCCCccEEcCHHHHHhCCEEEEEecCHHHHHHHHHHhcCCCCCccchHHhccC---CCEEEEEcHHHHhhhh
Confidence 12357889999999999999999999999999999999999988 458999999998 9999999999999986
Q ss_pred CCc
Q psy1382 222 RNE 224 (254)
Q Consensus 222 ~~~ 224 (254)
.+.
T Consensus 249 ~~~ 251 (253)
T PTZ00285 249 VKT 251 (253)
T ss_pred hcc
Confidence 553
No 5
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=100.00 E-value=2.7e-55 Score=384.47 Aligned_cols=195 Identities=41% Similarity=0.679 Sum_probs=177.6
Q ss_pred CCCCeEEEEcCCchHHHHHHhhCcCCC-CCCCCeEEEEcceeccCCCCchhHHHHHHHHhccCCCCCCCCcEEcCCCCCC
Q psy1382 2 NLPGVLSCQSCGSLIKALAEDILPKVR-TDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTSLP 80 (254)
Q Consensus 2 ~~~~~~iaLsgGstp~~ly~~~L~~~~-idws~v~vf~~DEr~Vp~d~~~Sn~~~~~~~ll~~~~~i~~~~v~~~~~~~d 80 (254)
+++.++|+||||+||+.+|+. |++.. ++|+||+||++|||+||++|++||+++++++||++++ ++++++|++++..+
T Consensus 21 ~~~~~~l~lsGGstp~~~y~~-L~~~~~i~w~~v~~f~~DEr~Vp~~~~~Sn~~~~~~~ll~~~~-~~~~~v~~~~~~~~ 98 (219)
T cd01400 21 KRGRFSLALSGGSTPKPLYEL-LAAAPALDWSKVHVFLGDERCVPPDDPDSNYRLAREALLSHVA-IPAANIHPIPTELG 98 (219)
T ss_pred hcCeEEEEECCCccHHHHHHH-hccccCCCCceEEEEEeeccccCCCCcccHHHHHHHHhhccCC-CCHhhEEeCCCCCC
Confidence 467899999999999999999 88874 9999999999999999999999999999999999999 99999999999878
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCceeEEEecccCCcceeecCCCCCCC-ccCceeEeecCCCCCCCCceEE
Q psy1382 81 VEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLL-KERSLWVAPIKDSPKPPPERVT 159 (254)
Q Consensus 81 ~~~~a~~Ye~~I~~~~~~~~~~~~~~~~~~~p~fDl~lLGiG~DGHiAslfPg~~~l-~~~~~~v~~~~~~~~~P~~riT 159 (254)
++++|++|+++|++..+ +.|+||+++||||+||||||||||++.+ .+.+.+++.+..++++|++|||
T Consensus 99 ~~~~a~~y~~~i~~~~~------------~~~~~Dl~lLGmG~DGH~ASlfP~~~~~~~~~~~~v~~~~~~~~~p~~RiT 166 (219)
T cd01400 99 PEDAAAAYEKELRALFG------------GVPPFDLVLLGMGPDGHTASLFPGHPALLEETDRLVVAVTDSPKPPPERIT 166 (219)
T ss_pred HHHHHHHHHHHHHHHhc------------CCCCCCEEEECCcCCCceeecCCCCcccccccCceEEEEeCCCCCCCccEE
Confidence 99999999999987531 2358999999999999999999999886 5556677777667788999999
Q ss_pred eCHHHHHhcCcEEEEEcCccHHHHHHHHHhC--CCCCcccccccccCCCeEEEEE
Q psy1382 160 ITFPVIHKARNIILYLIGAGKADIIKRILVD--CERLPGFYINATEPNCNVEWYL 212 (254)
Q Consensus 160 lt~~~i~~Ak~vill~~G~~Ka~al~~~l~~--~~~~Pas~l~~~~~~~~v~~~l 212 (254)
||++.|++||+|+|+++|++|+++|++++++ +.++|++.|+.| ..+++|++
T Consensus 167 lt~~~i~~a~~i~ll~~G~~K~~~l~~~l~~~~~~~~Pas~l~~~--~~~~~w~~ 219 (219)
T cd01400 167 LTLPVLNNARRVVFLVTGAEKAEALKRALAGPDPEELPAARVLPR--PGEVLWFL 219 (219)
T ss_pred ecHHHHhcCCeEEEEEeChhHHHHHHHHHcCCCCCCCChhhhcCC--CCcEEEeC
Confidence 9999999999999999999999999999998 579999999988 57888974
No 6
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-55 Score=388.54 Aligned_cols=197 Identities=38% Similarity=0.560 Sum_probs=175.3
Q ss_pred CCCeEEEEcCCchHHHHHHhhCcCCC---CCCCCeEEEEcceeccCCCCchhHHHHHHHHhccCCCCCCCCcEEcCCCCC
Q psy1382 3 LPGVLSCQSCGSLIKALAEDILPKVR---TDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTSL 79 (254)
Q Consensus 3 ~~~~~iaLsgGstp~~ly~~~L~~~~---idws~v~vf~~DEr~Vp~d~~~Sn~~~~~~~ll~~~~~i~~~~v~~~~~~~ 79 (254)
+++++|+||||+||+.+|+. |++.. +||++|++||+|||+||++|++||+++|+++||+++. ++++++|.++.+
T Consensus 31 ~~~~~l~LsgGsTP~~~ye~-L~~~~~~~~~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~l~~~~~-~~~~~i~~~~~~- 107 (238)
T COG0363 31 RGRAVLALSGGSTPLALYEA-LVKLPQGQLDWSKVTIFNLDERVVPPDDPESNYGLMRRNLFDHID-IPAEFIHNGDAS- 107 (238)
T ss_pred cCcEEEEECCCCCHHHHHHH-HHhhhccCCCchheEEEeccccccCCCCchhHHHHHHHHHhcccc-CcHhhcCCCCcc-
Confidence 45899999999999999999 88764 9999999999999999999999999999999999999 999998888875
Q ss_pred CHHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCceeEEEecccCCcceeecCCCCCCCc----cCceeEeecCCCCCCC
Q psy1382 80 PVEEAAK-DYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLK----ERSLWVAPIKDSPKPP 154 (254)
Q Consensus 80 d~~~~a~-~Ye~~I~~~~~~~~~~~~~~~~~~~p~fDl~lLGiG~DGHiAslfPg~~~l~----~~~~~v~~~~~~~~~P 154 (254)
+.+++|+ +|+++|.+.+ +||++|||||+||||||||||++.+. +....+....++|++|
T Consensus 108 ~~~~e~~~~ye~~i~~~~----------------~~Dl~lLG~G~DGHias~fP~~~~l~~~~~~~~~~~~~~~~~~~~P 171 (238)
T COG0363 108 DPDAECAARYEAKLPSAG----------------GFDLILLGMGEDGHIASLFPGTPALDSATTEEANSRVFVGDSPKVP 171 (238)
T ss_pred ChhHHHHHHHHhhccccC----------------CCCEEEEcccCCCcccccCCCCcccccccchhhceeeecCCCCCCC
Confidence 4444667 9999998654 79999999999999999999999543 2333444455678999
Q ss_pred CceEEeCHHHHHhcCcEEEEEcCccHHHHHHHHHhC--CCCCcccccccccCCCeEEEEEehhhhCCCC
Q psy1382 155 PERVTITFPVIHKARNIILYLIGAGKADIIKRILVD--CERLPGFYINATEPNCNVEWYLDAEAGKLIP 221 (254)
Q Consensus 155 ~~riTlt~~~i~~Ak~vill~~G~~Ka~al~~~l~~--~~~~Pas~l~~~~~~~~v~~~lD~~Aa~~l~ 221 (254)
.+|||||++.|++||+|+|+++|+.|++++++++++ +..+|+|+|+.| ++++||+|++|++.|.
T Consensus 172 ~~riTlt~~~I~~Ak~v~llv~G~~Ka~al~~~l~~~~~~~~Pas~l~~~---~~~~~~~d~~A~~~l~ 237 (238)
T COG0363 172 KERITLTLPTILDAKEVLLLVTGEEKADALKQALEGPVTELYPASILQLH---PNVTWFLDEEAASLLK 237 (238)
T ss_pred cceEEeCHHHHhcCCeEEEEEcCchHHHHHHHHhcCCCcccccHHHHhcC---CCeEEEEchHHhhhcc
Confidence 999999999999999999999999999999999998 556999999999 8899999999999874
No 7
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=100.00 E-value=4.8e-52 Score=372.20 Aligned_cols=198 Identities=18% Similarity=0.217 Sum_probs=176.2
Q ss_pred CCCeEEEEcCCchHHHHHHhhCcCC----CCCCCCeEEEEcceec-cCCCCchhHHHHHHHHhccCCCCCCCCcEEcCCC
Q psy1382 3 LPGVLSCQSCGSLIKALAEDILPKV----RTDFSKWKIFFCDERM-VPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNT 77 (254)
Q Consensus 3 ~~~~~iaLsgGstp~~ly~~~L~~~----~idws~v~vf~~DEr~-Vp~d~~~Sn~~~~~~~ll~~~~~i~~~~v~~~~~ 77 (254)
++.++|+||||+||+.+|+. |++. +++|+||+|||+|||+ ||++|++||+++++++||++++ +|++|+|++++
T Consensus 32 ~~~~~i~lsgGstP~~~y~~-L~~~~~~~~i~w~~v~~f~~DEr~~vp~~~~~Sn~~~~~~~l~~~~~-i~~~~i~~~~~ 109 (259)
T TIGR00502 32 ARPFVLGLPTGGTPIGTYKQ-LIELHQAGKISFQNVTTFNMDEYAGLSEEHPESYHSFMHNNFFQHID-IKPENINILNG 109 (259)
T ss_pred cCceEEEEcCCCChHHHHHH-HHHHhhccCCchhHeEEEeCeecCCCCCCchHHHHHHHHHHhcccCC-CCHHHEecCCC
Confidence 56899999999999999999 8753 7999999999999997 9999999999999999999999 99999999997
Q ss_pred C-CCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCceeEEEecccCCcceeecCCCCCCCccCceeEee----------
Q psy1382 78 S-LPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLKERSLWVAP---------- 146 (254)
Q Consensus 78 ~-~d~~~~a~~Ye~~I~~~~~~~~~~~~~~~~~~~p~fDl~lLGiG~DGHiAslfPg~~~l~~~~~~v~~---------- 146 (254)
. .+++++|++|++.|++.. +||+++||||+|||||||||++++... +.++..
T Consensus 110 ~~~~~~~~a~~y~~~i~~~~----------------~~Dl~llG~G~DGH~As~fP~~~~~~~-~~~~~l~~~~~~~~~~ 172 (259)
T TIGR00502 110 NAPDLEAECRRYEEKIRSYG----------------GIDLFMGGIGPDGHIAFNEPGSSLTSR-TRIKTLTEDTIQANSR 172 (259)
T ss_pred CccCHHHHHHHHHHHHHHcC----------------CCCEEEEccCCCCceecCCCCCCCCCc-eEEEEcchhhHHHHhh
Confidence 5 589999999999998653 799999999999999999999875433 223221
Q ss_pred cC--CCCCCCCceEEeCHHHHHhcCcEEEEEcCccHHHHHHHHHhC--CCCCcccccccccCCCeEEEEEehhhhCCCCC
Q psy1382 147 IK--DSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVD--CERLPGFYINATEPNCNVEWYLDAEAGKLIPR 222 (254)
Q Consensus 147 ~~--~~~~~P~~riTlt~~~i~~Ak~vill~~G~~Ka~al~~~l~~--~~~~Pas~l~~~~~~~~v~~~lD~~Aa~~l~~ 222 (254)
++ +.+.+|++|||||++.|++|++|+++++|++|++++++++.+ +..+|+++|+.| ++++||+|++||++|+.
T Consensus 173 ~~~~~~~~~p~~riTlt~~~i~~a~~vi~~~~G~~Ka~al~~al~~~~~~~~Pas~l~~~---~~~~~~~d~~Aa~~l~~ 249 (259)
T TIGR00502 173 FFEGDVNQVPKYALTVGIGTILDSKEVLILVSGHQKALALQKAVEGGVNHMWTISALQLH---KHAIVVCDENATQELKV 249 (259)
T ss_pred hhcCCCCCCCCceEecCHHHHhhCCEEEEEEcCHHHHHHHHHHHcCCCCCccchHHhccC---CCEEEEEcHHHHhhhhH
Confidence 11 335678899999999999999999999999999999999998 569999999998 89999999999999854
No 8
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=100.00 E-value=4.1e-52 Score=367.55 Aligned_cols=192 Identities=21% Similarity=0.304 Sum_probs=170.0
Q ss_pred CCCCeEEEEcCCchHHHHHHhhCcC----CCCCCCCeEEEEccee-ccCCCCchhHHHHHHHHhccCCCCCCCCcEEcCC
Q psy1382 2 NLPGVLSCQSCGSLIKALAEDILPK----VRTDFSKWKIFFCDER-MVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVN 76 (254)
Q Consensus 2 ~~~~~~iaLsgGstp~~ly~~~L~~----~~idws~v~vf~~DEr-~Vp~d~~~Sn~~~~~~~ll~~~~~i~~~~v~~~~ 76 (254)
.++.++|+||||+||+.+|+. |++ .+++|+||+||++||| +||++|++||+++++++||++++ ++++|+|+++
T Consensus 26 ~~~~~~l~lsgGstP~~~y~~-L~~~~~~~~l~w~~v~~f~~DE~v~vp~~~~~Sn~~~~~~~ll~~~~-i~~~~~~~~~ 103 (232)
T PRK09762 26 SKPDAVICLATGATPLLTYHY-LVEKIHQQQVDVSQLTFVKLDEWVDLPLTMPGTCETFLQQHIVQPLG-LREDQLISFR 103 (232)
T ss_pred HCCCeEEEECCCCCHHHHHHH-HHHHHhhcCCCHHHeEEEcCcEEecCCCCccHHHHHHHHHHhcCCCC-CCHHHEECCC
Confidence 357899999999999999999 884 3799999999999999 59999999999999999999999 9999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCceeEEEecccCCcceeecCCCCCCCc--------cCceeEeecC
Q psy1382 77 TSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLK--------ERSLWVAPIK 148 (254)
Q Consensus 77 ~~~d~~~~a~~Ye~~I~~~~~~~~~~~~~~~~~~~p~fDl~lLGiG~DGHiAslfPg~~~l~--------~~~~~v~~~~ 148 (254)
+..+++++|++|++.|++.+ +||+++||||+||||||||||+++.. +.+.++....
T Consensus 104 ~~~~~~~~~~~y~~~i~~~~----------------~~Dl~lLGmG~DGH~A~n~P~~slfp~~~~~~l~~~~~~~~~~~ 167 (232)
T PRK09762 104 SEEINETECERVTNLIARKG----------------GLDLCVLGLGKNGHLGLNEPGESLQPACHISQLDARTQQHEMLK 167 (232)
T ss_pred CCcccHHHHHHHHHHHHhcC----------------CCCEEEEccCCCCceecCCCCCCCCCCceeeeccHhhhhhhccC
Confidence 87555889999999998653 79999999999999998888865432 2233443344
Q ss_pred CCCCCCCceEEeCHHHHHhcCcEEEEEcCccHHHHHHHHHhC--CCCCcccccccccCCCeEEEEEeh
Q psy1382 149 DSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVD--CERLPGFYINATEPNCNVEWYLDA 214 (254)
Q Consensus 149 ~~~~~P~~riTlt~~~i~~Ak~vill~~G~~Ka~al~~~l~~--~~~~Pas~l~~~~~~~~v~~~lD~ 214 (254)
+++++|++|||||++.|++||+|+|+++|++|+++|++++++ +..+|+++||.| +++++++|+
T Consensus 168 ~~~~~p~~riTlt~~~i~~A~~i~llv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h---~~~~~~~d~ 232 (232)
T PRK09762 168 TAGRPVTRGITLGLKDILNAREVLLLVTGEGKQDATERFLTAKVSTAIPASFLWLH---SNFICLIDR 232 (232)
T ss_pred CCCCCCCccEEeCHHHHHhcCEEEEEEeCHHHHHHHHHHHcCCCCCcccHHHHhhC---CCEEEEecC
Confidence 567889999999999999999999999999999999999988 568999999999 999999995
No 9
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=100.00 E-value=3.1e-51 Score=354.02 Aligned_cols=176 Identities=42% Similarity=0.694 Sum_probs=151.6
Q ss_pred CCCCeEEEEcCCchHHHHHHhhCcCC---CCCCCCeEEEEcceeccCCCCchhHHHHHHHHhccCCCCCCCCcEEcCCC-
Q psy1382 2 NLPGVLSCQSCGSLIKALAEDILPKV---RTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNT- 77 (254)
Q Consensus 2 ~~~~~~iaLsgGstp~~ly~~~L~~~---~idws~v~vf~~DEr~Vp~d~~~Sn~~~~~~~ll~~~~~i~~~~v~~~~~- 77 (254)
++++++||||||+||+.+|+. |++. +++|+||+||++|||+||++|++||+++++++||++++ ||++|||++++
T Consensus 19 ~~~~~~i~LsgGstp~~~y~~-L~~~~~~~i~w~~v~~~~~DEr~v~~~~~~Sn~~~~~~~l~~~~~-i~~~~i~~~~~~ 96 (199)
T PF01182_consen 19 ERGRAVIALSGGSTPKPLYQE-LAKLHKERIDWSRVHFFNVDERVVPPDDPDSNYRMLREHLLDPLP-IPPENIHPIDGE 96 (199)
T ss_dssp HCSSEEEEE--SCTHHHHHHH-HHHHHHTCSCGGGEEEEESEEESSTTTSTTSHHHHHHHHTGGGSG-GGGGGEETSSTT
T ss_pred HCCCEEEEEcCCHHHHHHHHH-HhhhccccCChhHeEEEeCcccccCCCCCccHHHHHHHHhhccCC-CCcceEEeCCCC
Confidence 467899999999999999999 7764 59999999999999999999999999999999999999 99999999997
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCceeEEEecccCCcceeecCCCCCCCc-cCceeEeecCCCCCCCCc
Q psy1382 78 SLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLK-ERSLWVAPIKDSPKPPPE 156 (254)
Q Consensus 78 ~~d~~~~a~~Ye~~I~~~~~~~~~~~~~~~~~~~p~fDl~lLGiG~DGHiAslfPg~~~l~-~~~~~v~~~~~~~~~P~~ 156 (254)
..+++++|++|++.|++.++. . ..|.||+++||||+||||||||||++.+. +++.++..+.++|++|++
T Consensus 97 ~~~~~~~~~~y~~~l~~~~~~--------~--~~p~~Dl~lLG~G~DGH~aslfPg~~~~~~~~~~~~~~~~~~~~~p~~ 166 (199)
T PF01182_consen 97 ADDPEEAAERYEQELASLGGE--------A--GFPGFDLVLLGMGEDGHTASLFPGSPALLEESERWVVAVTDSPKPPPQ 166 (199)
T ss_dssp TSSHHHHHHHHHHHHHHHSSS--------E--ECESBSEEEEE--TTS-BTTB-TTCHTTHHHHSSSSEEEECCTTSSSE
T ss_pred CCCHHHHHHHHHHHHHHhccc--------c--CCCceeEEEeccccCCCeeccCCCCccccccccceEEEecCCCCCCcc
Confidence 479999999999999998731 0 13569999999999999999999998854 334466667778999999
Q ss_pred eEEeCHHHHHhcCcEEEEEcCccHHHHHHHHHh
Q psy1382 157 RVTITFPVIHKARNIILYLIGAGKADIIKRILV 189 (254)
Q Consensus 157 riTlt~~~i~~Ak~vill~~G~~Ka~al~~~l~ 189 (254)
|||||+++|++||+|+|+++|++|+++|+++|+
T Consensus 167 riTlt~~~i~~a~~i~~l~~G~~Ka~~v~~~l~ 199 (199)
T PF01182_consen 167 RITLTLPTIMSARKIVLLATGEEKAEAVKRALQ 199 (199)
T ss_dssp EEEE-HHHHHTSSEEEEEEESGGGHHHHHHHH-
T ss_pred eEEeCHHHHHhcCEEEEEEeCHHHHHHHHHHhC
Confidence 999999999999999999999999999999985
No 10
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=100.00 E-value=2.6e-50 Score=357.35 Aligned_cols=192 Identities=24% Similarity=0.360 Sum_probs=167.8
Q ss_pred CCCCeEEEEcCCchHHHHHHhhCcCC---CCCCCCeEEEEcceeccCC---CCchhHHHHHHHHhccCCCCCCCCcEEcC
Q psy1382 2 NLPGVLSCQSCGSLIKALAEDILPKV---RTDFSKWKIFFCDERMVPY---DHPESTFGVYKKLLLGKFPGLTEESFVPV 75 (254)
Q Consensus 2 ~~~~~~iaLsgGstp~~ly~~~L~~~---~idws~v~vf~~DEr~Vp~---d~~~Sn~~~~~~~ll~~~~~i~~~~v~~~ 75 (254)
+++.++|+||||+||+.+|+. |++. .++|+||+||++|| ||. ++++||++++|++||++++ |+++|+|++
T Consensus 26 ~~~~~~l~lsgG~tp~~~y~~-L~~~~~~~~~w~~v~~f~~DE--v~~~~~~~~~s~~~~~~~~l~~~~~-i~~~~~~~~ 101 (239)
T PRK12358 26 KTKRVNLAITAGSTPKGMYEY-LITLVKGKAWYDNVHYYNFDE--IPFRGKEGEGVTITNLRNLFFTPAG-IKEENIHKL 101 (239)
T ss_pred hCCCeEEEECCCCCHHHHHHH-HHHHHhcCCCHHHcEEEeccc--cCCCCccccccHHHHHHHHhcCcCC-CCHHHeeCC
Confidence 357899999999999999999 8763 56799999999999 455 4566899999999999999 999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCceeEEEecccCCcceeecCCCCCCCccCceeEeec--------
Q psy1382 76 NTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLKERSLWVAPI-------- 147 (254)
Q Consensus 76 ~~~~d~~~~a~~Ye~~I~~~~~~~~~~~~~~~~~~~p~fDl~lLGiG~DGHiAslfPg~~~l~~~~~~v~~~-------- 147 (254)
++ ++|++|+++|++.+ +||+++||||+||||||||||++.+....+++...
T Consensus 102 ~~-----~~~~~y~~~i~~~~----------------~~Dl~lLG~G~DGH~As~fPg~~~~~~~~~~v~~~~~~~~~~~ 160 (239)
T PRK12358 102 TI-----DNYREHDQKLARDG----------------GLDLVVLGLGADGHFCGNLPGTTHFHDETVEVPIQGEMVDIVA 160 (239)
T ss_pred CH-----HHHHHHHHHHHhcC----------------CCCEEEEccCCCCceeecCCCCCcCCCceEEEECcHHHHHHhh
Confidence 95 36899999998653 89999999999999999999987655544443221
Q ss_pred -----CCCCCCCCceEEeCHHHHHhcCcEEEEEcCccHHHHHHHHHhC--CCCCcccccccccCCCeEEEEEehhhhCCC
Q psy1382 148 -----KDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVD--CERLPGFYINATEPNCNVEWYLDAEAGKLI 220 (254)
Q Consensus 148 -----~~~~~~P~~riTlt~~~i~~Ak~vill~~G~~Ka~al~~~l~~--~~~~Pas~l~~~~~~~~v~~~lD~~Aa~~l 220 (254)
.++|++|++|||||++.|++||+|+|+++|++|+++|++++++ +.++|+|+||.| ++++||+|++||++|
T Consensus 161 ~~~~~~~~~~~P~~riTlt~~~i~~A~~i~ll~~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h---~~~~~~~D~~aa~~l 237 (239)
T PRK12358 161 HGELGGDFSLVPDSYVTMGPKSIMAAKNLLLIVNGKGKAQILKKVLQGPVTEDVPASILQLH---PNLTVILDEAAAAEL 237 (239)
T ss_pred hhhccCCcccCCCeeEEcchHHHHhCCEEEEEEeCHHHHHHHHHHHcCCCCCCcCcHHhccC---CCEEEEECHHHHhhc
Confidence 1357889999999999999999999999999999999999998 569999999998 999999999999887
Q ss_pred C
Q psy1382 221 P 221 (254)
Q Consensus 221 ~ 221 (254)
+
T Consensus 238 ~ 238 (239)
T PRK12358 238 A 238 (239)
T ss_pred c
Confidence 4
No 11
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=100.00 E-value=1.1e-48 Score=388.30 Aligned_cols=202 Identities=24% Similarity=0.296 Sum_probs=180.4
Q ss_pred CCCCeEEEEcCCchHHHHHHhhCcCC----CCCCCCeEEEEcceec-cCCCCchhHHHHHHHHhccCCCCCCCCcEEcCC
Q psy1382 2 NLPGVLSCQSCGSLIKALAEDILPKV----RTDFSKWKIFFCDERM-VPYDHPESTFGVYKKLLLGKFPGLTEESFVPVN 76 (254)
Q Consensus 2 ~~~~~~iaLsgGstp~~ly~~~L~~~----~idws~v~vf~~DEr~-Vp~d~~~Sn~~~~~~~ll~~~~~i~~~~v~~~~ 76 (254)
+++.++|+||||+||+.+|+. |++. .++|++|+||++|||+ ||++|++||+++|+++||++++ ||++|+|.++
T Consensus 57 ~~~~~~laLsGGsTP~~~Y~~-L~~~~~~~~l~w~~V~~F~~DEr~~vp~d~~~Sn~~~~re~L~~~i~-Ip~~ni~~~d 134 (652)
T PRK02122 57 EGKPCVLGLATGSSPIGVYAE-LIRMHREEGLSFKNVITFNLDEYYPMQPDSLQSYHRFMKENLFDHVD-IPPENIHIPD 134 (652)
T ss_pred hCCCEEEEEcCCcCHHHHHHH-HHhhhhccCCCchheEEEeCeeccCCCCCcHHHHHHHHHHHhhccCC-CCHHHeecCC
Confidence 467899999999999999999 8764 7999999999999999 9999999999999999999999 9999999998
Q ss_pred CC---CCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCceeEEEecccCCcceeecCCCCCCCccCceeEe--------
Q psy1382 77 TS---LPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLKERSLWVA-------- 145 (254)
Q Consensus 77 ~~---~d~~~~a~~Ye~~I~~~~~~~~~~~~~~~~~~~p~fDl~lLGiG~DGHiAslfPg~~~l~~~~~~v~-------- 145 (254)
+. .+++++|++|++.|++.+ +||++|||||+||||||||||++..+. ++.+.
T Consensus 135 g~~~~~~~~~~~~~Ye~~I~~~g----------------g~DlvLLGiG~DGHiAsnfPgs~~~s~-tr~v~l~~~tr~~ 197 (652)
T PRK02122 135 GTIPKEEIDEYCRDYEEKIEAAG----------------GIDFQLLGIGRTGHIGFNEPGSGRNSR-TRLVTLDHITRRD 197 (652)
T ss_pred CccCcCCHHHHHHHHHHHHHhhC----------------CCcEEEeCCCCCCceeccCCCCccccc-ceEEEccchhhhh
Confidence 75 478999999999999764 799999999999999999999986432 22221
Q ss_pred ---ecCCCCCCCCceEEeCHHHHHhcCcEEEEEcCccHHHHHHHHHhC--CCCCcccccccccCCCeEEEEEehhhhCCC
Q psy1382 146 ---PIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVD--CERLPGFYINATEPNCNVEWYLDAEAGKLI 220 (254)
Q Consensus 146 ---~~~~~~~~P~~riTlt~~~i~~Ak~vill~~G~~Ka~al~~~l~~--~~~~Pas~l~~~~~~~~v~~~lD~~Aa~~l 220 (254)
.+.+.+.+|++|||||+++|++||+|+|+++|++|+++|++++++ +..+|||+||.| ++++||+|++||+.|
T Consensus 198 aa~~f~~~~~~P~~rITmgi~~I~~Ar~Iilla~G~~Ka~iv~~~l~g~~~~~~PAs~Lq~h---~~~~~~lD~~AA~~L 274 (652)
T PRK02122 198 AASDFFGEENVPRKAITMGVGTILKARRIVLLAWGEHKAPIIKRAVEGEISDEVPASYLQEH---PNATFVLDLAAASEL 274 (652)
T ss_pred hccccCCCCCCCCceEEeCHHHHHhhCeEEEEEeCHHHHHHHHHHHhCCCCCccchHHhccC---CCEEEEEcHHHhhhc
Confidence 123457889999999999999999999999999999999999998 579999999988 899999999999999
Q ss_pred CC-Cch
Q psy1382 221 PR-NEP 225 (254)
Q Consensus 221 ~~-~~~ 225 (254)
+. +.|
T Consensus 275 tr~~~p 280 (652)
T PRK02122 275 TRIKTP 280 (652)
T ss_pred ccCCCC
Confidence 76 444
No 12
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=100.00 E-value=1.4e-42 Score=303.79 Aligned_cols=197 Identities=25% Similarity=0.330 Sum_probs=172.3
Q ss_pred CCCeEEEEcCCchHHHHHHhhCcCC----CCCCCCeEEEEcceec-cCCCCchhHHHHHHHHhccCCCCCCCCcEEcCCC
Q psy1382 3 LPGVLSCQSCGSLIKALAEDILPKV----RTDFSKWKIFFCDERM-VPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNT 77 (254)
Q Consensus 3 ~~~~~iaLsgGstp~~ly~~~L~~~----~idws~v~vf~~DEr~-Vp~d~~~Sn~~~~~~~ll~~~~~i~~~~v~~~~~ 77 (254)
++.++|+||||+||..+|+. |... +++|++|+||++|||+ |+.+|++||++++++.|+++++ ++..++|++++
T Consensus 18 ~~~~~i~lsgG~T~~~~~~~-l~~~~~~~~~~~~~v~v~~~der~~v~~~~~~sn~~~~~~~l~~~~~-~~~~~i~~p~~ 95 (232)
T cd01399 18 KPPAVLGLATGSTPLGVYEE-LIELHKEGGLSFSNVTTFNLDEYVGLPPDHPQSYHYFMRENLFDHID-IKPENIHIPDG 95 (232)
T ss_pred CCCcEEEEcCCCCHHHHHHH-HHHHHHhcCCcHHHeEEEeCceecCCCCCcchhHHHHHHHHhhccCC-CCHHHEecCCC
Confidence 46889999999999999999 7653 6899999999999999 9999999999999999999999 89999999987
Q ss_pred C-CCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCceeEEEecccCCcceeecCCCCCCCccCceeEe---------ec
Q psy1382 78 S-LPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLKERSLWVA---------PI 147 (254)
Q Consensus 78 ~-~d~~~~a~~Ye~~I~~~~~~~~~~~~~~~~~~~p~fDl~lLGiG~DGHiAslfPg~~~l~~~~~~v~---------~~ 147 (254)
. .++..+++.|++.|++.. .||+++||||+|||+|||||++....+...... .+
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~----------------~~Dl~llGiG~dgh~as~~p~~~~~~~~~~~~l~~~~~~~~~~~ 159 (232)
T cd01399 96 NAADLEAECRRYEALIAEAG----------------GIDLQLLGIGENGHIGFNEPGSSLDSRTRVVTLDESTRQANARF 159 (232)
T ss_pred CccCHHHHHHHHHHHHHHcC----------------CCCEEEECCCCCceeeecCCCCCCCCceEEEECCHHhHHHHhhh
Confidence 5 478889999999998643 799999999999999999999876543321111 11
Q ss_pred C-CCCCCCCceEEeCHHHHHhcCcEEEEEcCccHHHHHHHHHhC--CCCCcccccccccCCCeEEEEEehhhhCCC
Q psy1382 148 K-DSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVD--CERLPGFYINATEPNCNVEWYLDAEAGKLI 220 (254)
Q Consensus 148 ~-~~~~~P~~riTlt~~~i~~Ak~vill~~G~~Ka~al~~~l~~--~~~~Pas~l~~~~~~~~v~~~lD~~Aa~~l 220 (254)
+ ..+..|.+|||||++.|+++++++++++|++|+++++.+|.+ +.++|+++|+.| ++++||+|++||+.|
T Consensus 160 ~~~~~~~~~~~itltl~~l~~a~~vi~~a~G~~K~~ai~~al~~~~~~~~P~~~l~~~---~~~~~~~d~~aa~~~ 232 (232)
T cd01399 160 FDGDEDVPTQAITMGIGTIMKAKEILLLATGEGKAEAVKKALEGPVTEECPASILQLH---PNVTVILDEAAASEL 232 (232)
T ss_pred cCCcCCCCCceEecCHHHHhhCCEEEEEeCChHHHHHHHHHHhCCCCCCcchHHHhhC---CCeEEEEcHHHhccC
Confidence 2 225778899999999999999999999999999999999998 568999999998 899999999999764
No 13
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=100.00 E-value=4.4e-42 Score=306.59 Aligned_cols=198 Identities=22% Similarity=0.265 Sum_probs=172.7
Q ss_pred CCeEEEEcCCchHHHHHHhhCc----CCCCCCCCeEEEEcceec-cCCCCchhHHHHHHHHhccCCCCCCCCcEEcCCCC
Q psy1382 4 PGVLSCQSCGSLIKALAEDILP----KVRTDFSKWKIFFCDERM-VPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTS 78 (254)
Q Consensus 4 ~~~~iaLsgGstp~~ly~~~L~----~~~idws~v~vf~~DEr~-Vp~d~~~Sn~~~~~~~ll~~~~~i~~~~v~~~~~~ 78 (254)
+..+||||||+||..+|+. |. +..++|++|+||++|||+ ||.+|++||+.++++.|+++++ ++..++|++++.
T Consensus 33 ~~~~iglsgG~T~~~~~~~-L~~~~~~~~~~~~~v~v~~~DEr~gv~~~~~~s~~~~~~~~l~~~~~-~~~~~~~~p~~~ 110 (261)
T PRK00443 33 RPFVLGLATGSSPLETYKA-LIELHKAGKVDFSRVTTFNLDEYVGLPADHPESYRYFMRENFFDHVD-IPPENINLLNGN 110 (261)
T ss_pred CceEEEecCCCCHHHHHHH-HHHHhhhcCCchHHeEEEeCceecCCCCCChHHHHHHHHHHHhccCC-CCHHHeecCCCC
Confidence 4577899999999999999 87 347999999999999997 9999999999999999999999 899999999875
Q ss_pred -CCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCceeEEEecccCCcceeecCCCCCCCccCcee---------EeecC
Q psy1382 79 -LPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLKERSLW---------VAPIK 148 (254)
Q Consensus 79 -~d~~~~a~~Ye~~I~~~~~~~~~~~~~~~~~~~p~fDl~lLGiG~DGHiAslfPg~~~l~~~~~~---------v~~~~ 148 (254)
.++..+++.|++.|+... +||++|||||+|||+|||||++.+..+.... +..++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~----------------~~Dl~llGiG~dgh~aslfp~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (261)
T PRK00443 111 APDPEAECRRYEEKIKSAG----------------GIDLQILGIGENGHIAFNEPGSSFASRTRIKTLTEDTRIANSRFF 174 (261)
T ss_pred CcCHHHHHHHHHHHHHHcC----------------CCCEEEEccCCCCcccccCCCCCCCCCeEEEEccHhhHHHHHhhc
Confidence 588889999999998643 7999999999999999999998754322110 01122
Q ss_pred C--CCCCCCceEEeCHHHHHhcCcEEEEEcCccHHHHHHHHHhC--CCCCcccccccccCCCeEEEEEehhhhCCCCC
Q psy1382 149 D--SPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVD--CERLPGFYINATEPNCNVEWYLDAEAGKLIPR 222 (254)
Q Consensus 149 ~--~~~~P~~riTlt~~~i~~Ak~vill~~G~~Ka~al~~~l~~--~~~~Pas~l~~~~~~~~v~~~lD~~Aa~~l~~ 222 (254)
+ .+..|.+|||||++.|++|++++++++|++|+++++.+|.+ +.++|+++|+.| ++++||+|++||+.|+.
T Consensus 175 d~~g~~~~~~~itl~l~~L~~a~~vi~~a~G~~K~~ai~~al~~~~~~~~Pa~~l~~~---~~~~~~~d~~aa~~l~~ 249 (261)
T PRK00443 175 DGDIEQVPKYALTVGVGTILDAKEIMLLAPGHNKAEAVKAAVEGPVNHMWPASILQLH---PKATLVLDEAAASELKV 249 (261)
T ss_pred CCCccCCCCeeEEcCHHHHHhcCeEEEEecChHHHHHHHHHHhCCCCCCcchHHHhhC---CCEEEEEcHHHHhHHHH
Confidence 2 25678899999999999999999999999999999999998 678999999988 89999999999999964
No 14
>KOG3148|consensus
Probab=100.00 E-value=1e-39 Score=276.04 Aligned_cols=199 Identities=19% Similarity=0.252 Sum_probs=180.9
Q ss_pred CCeEEEEcCCchHHHHHHhhCcCC----CCCCCCeEEEEcceec-cCCCCchhHHHHHHHHhccCCCCCCCCcEEcCCCC
Q psy1382 4 PGVLSCQSCGSLIKALAEDILPKV----RTDFSKWKIFFCDERM-VPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTS 78 (254)
Q Consensus 4 ~~~~iaLsgGstp~~ly~~~L~~~----~idws~v~vf~~DEr~-Vp~d~~~Sn~~~~~~~ll~~~~~i~~~~v~~~~~~ 78 (254)
+.|+++|++||||.++|+. |.+- .++|+.|..|++|||+ +|.||++|+.++|..+||+|++ |.++|+|.+++.
T Consensus 33 kyf~lglptgstplg~ykk-lie~~k~g~~sf~yvktfnmdeyvglprdh~esyhsfmwnnffkhid-i~p~n~hildgn 110 (273)
T KOG3148|consen 33 KYFVLGLPTGSTPLGMYKK-LIEFYKNGVLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHID-INPANIHILDGN 110 (273)
T ss_pred eEEEEecCCCCCchhHHHH-HHHHHhcCceEEEEEeeecchhhcCCCCCChhHHHHHHHHhhhhhcc-cCcccceeecCc
Confidence 5789999999999999999 7762 7999999999999999 9999999999999999999999 999999999997
Q ss_pred -CCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCceeEEEecccCCcceeecCCCCCCCccCc--------e-eEeecC
Q psy1382 79 -LPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLKERS--------L-WVAPIK 148 (254)
Q Consensus 79 -~d~~~~a~~Ye~~I~~~~~~~~~~~~~~~~~~~p~fDl~lLGiG~DGHiAslfPg~~~l~~~~--------~-~v~~~~ 148 (254)
.|.+++|+.||.+|++.+ ++||-+-|||+|||||+|+||+++.+++. . ..++++
T Consensus 111 a~dl~aec~~fe~kikeag----------------gidlfvggigpdghiafnepgsslvsrtrvktla~dti~anarff 174 (273)
T KOG3148|consen 111 AADLQAECDAFERKIKEAG----------------GIDLFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFF 174 (273)
T ss_pred hHHHHHHHHHHHHHHHhcC----------------CeEEEeeccCCCCceeeCCCcchhhhhhhHHHHhHHHHHhhceec
Confidence 699999999999999876 79999999999999999999999876531 1 124455
Q ss_pred CC--CCCCCceEEeCHHHHHhcCcEEEEEcCccHHHHHHHHHhC--CCCCcccccccccCCCeEEEEEehhhhCCCCCC
Q psy1382 149 DS--PKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVD--CERLPGFYINATEPNCNVEWYLDAEAGKLIPRN 223 (254)
Q Consensus 149 ~~--~~~P~~riTlt~~~i~~Ak~vill~~G~~Ka~al~~~l~~--~~~~Pas~l~~~~~~~~v~~~lD~~Aa~~l~~~ 223 (254)
+. .++|.+.+|+|.++.|.||.|.++++|+.||-+|.++++. +-.+-+|..|.| +++++++|++|--.|..+
T Consensus 175 dgd~tkvpt~altvgvgtvmdarevmilitgahkafalykaieegvnhmwtvsafqqh---~~t~ficdedatlelkvk 250 (273)
T KOG3148|consen 175 DGDLTKVPTQALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQH---PRTTFICDEDATLELKVK 250 (273)
T ss_pred CCccccCccceeEeeeeeeeecceEEEEEeccHHHHHHHHHHHhcccceeehhhHhhC---CceEEEecCCceeEEEee
Confidence 43 5899999999999999999999999999999999999996 779999999999 999999999999888664
No 15
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=100.00 E-value=4.2e-36 Score=253.46 Aligned_cols=148 Identities=24% Similarity=0.198 Sum_probs=132.0
Q ss_pred CCCCeEEEEcCCchHHHHHHhhCcCCCC--CCCCeEEEEcceeccCCCCchhHHHHHHHHhccCCCCCCCCcEEcCCCCC
Q psy1382 2 NLPGVLSCQSCGSLIKALAEDILPKVRT--DFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTSL 79 (254)
Q Consensus 2 ~~~~~~iaLsgGstp~~ly~~~L~~~~i--dws~v~vf~~DEr~Vp~d~~~Sn~~~~~~~ll~~~~~i~~~~v~~~~~~~ 79 (254)
+++.++|+||||+||+.+|+. |++... +|++|+||++|||+||.+|++||+++++++||++++ ++++++|++++..
T Consensus 18 ~~~~~~i~lsgGsTp~~~y~~-L~~~~~~~~w~~v~~f~~DEr~v~~~~~~Sn~~~~~~~ll~~~~-i~~~~v~~~~~~~ 95 (169)
T cd00458 18 EKDDMVIGLGTGSTPAYFYKL-LGEKLKRGEISDIVGFPTDERYVPLDSDQSNFRQAKLLAFEHDI-IPASNVHYVDTSL 95 (169)
T ss_pred hCCCEEEEECCCccHHHHHHH-HHhhhhhCCccceEEEECccccCCCCCchHHHHHHHHHhhccCC-CCHHHeecCCCCC
Confidence 467899999999999999999 876422 799999999999999999999999999999999999 9999999999886
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCceeEEEecccCCcceeecCCCCCCCccCceeEeecCCCCCCCCceEE
Q psy1382 80 PVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLKERSLWVAPIKDSPKPPPERVT 159 (254)
Q Consensus 80 d~~~~a~~Ye~~I~~~~~~~~~~~~~~~~~~~p~fDl~lLGiG~DGHiAslfPg~~~l~~~~~~v~~~~~~~~~P~~riT 159 (254)
++++++.+|++.+.+.. ++||++|||||
T Consensus 96 ~~~~~a~~y~~~~~~~~---------------~~~Dl~lLG~G------------------------------------- 123 (169)
T cd00458 96 PIEKACEKYEREILDQV---------------DAIDLAVDGAG------------------------------------- 123 (169)
T ss_pred CcHHHHHHHHHHHHhhC---------------CCCCEEEECcC-------------------------------------
Confidence 66667777777665433 37999999999
Q ss_pred eCHHHHHhcCcEEEEEcCccHHHHHHHHHhC--CCCCcccccccccCCCeEEEEE
Q psy1382 160 ITFPVIHKARNIILYLIGAGKADIIKRILVD--CERLPGFYINATEPNCNVEWYL 212 (254)
Q Consensus 160 lt~~~i~~Ak~vill~~G~~Ka~al~~~l~~--~~~~Pas~l~~~~~~~~v~~~l 212 (254)
++||+++|+++|++|+++|++++++ +.++|++.|+.| ++++||+
T Consensus 124 ------~~a~~i~~~~~G~~Ka~~l~~~~~~~~~~~~Pas~l~~~---~~~~~~~ 169 (169)
T cd00458 124 ------YRAGTVIVLVDGRKKVDYLCQNTEPGVIENGIFADIRGK---EKDIVIV 169 (169)
T ss_pred ------ccccEEEEEecChhHHHHHHHHhcCCCCCcCCHHHhccC---CCeEEeC
Confidence 7899999999999999999999987 569999999998 8999985
No 16
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=96.85 E-value=0.0011 Score=59.56 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=97.8
Q ss_pred CCeEEEEcCCchHHHHHHhhCcCCCCCCCCeEEEEcceeccCCCCchhHHHHHHHHhccCCCCCCCCcEEcCCCC---CC
Q psy1382 4 PGVLSCQSCGSLIKALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTS---LP 80 (254)
Q Consensus 4 ~~~~iaLsgGstp~~ly~~~L~~~~idws~v~vf~~DEr~Vp~d~~~Sn~~~~~~~ll~~~~~i~~~~v~~~~~~---~d 80 (254)
+.-+|+++.|+|-..+-+. +.. ....+++|+.+===. ..+.. .+...+-..|=.+++ .+.+.++.. .+
T Consensus 52 ~~~~iGv~wG~Tl~~~~~~-l~~--~~~~~~~vV~l~Gg~-~~~~~-~~~~~i~~~lA~~~g----~~~~~l~aP~~~~s 122 (255)
T PF04198_consen 52 DGDVIGVGWGRTLYAVANH-LPP--KSLPNVTVVPLIGGV-GNSNS-YQANEIARRLAEKLG----GKYYFLPAPAFVDS 122 (255)
T ss_dssp TTEEEEE-TSHHHHHHHHT-S----SSSSCEEEEESBSBT-TTSSG-GSHHHHHHHHHHHHT----SEEE---SBSB-SS
T ss_pred CCCEEEEcchHHHHHHHHh-cCc--cCCCCcEEEECCCCC-CCCCC-cCHHHHHHHHHHHhC----CcEEEEeCCccCCC
Confidence 4558999999999999888 665 566788888853222 11111 222222222333334 233444332 23
Q ss_pred HHHHH-----HHHHHHHHhcCCCCCCCCCCCCCCCCCceeEEEecccCCcceeecCCCCCCCc-------cCc---eeEe
Q psy1382 81 VEEAA-----KDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLK-------ERS---LWVA 145 (254)
Q Consensus 81 ~~~~a-----~~Ye~~I~~~~~~~~~~~~~~~~~~~p~fDl~lLGiG~DGHiAslfPg~~~l~-------~~~---~~v~ 145 (254)
++... ..+.+.++.. ...|++++|||.=...+.++...-+.. +.. ..+.
T Consensus 123 ~~~~~~l~~~~~i~~~l~~~----------------~~~dial~giG~~~~~~~~~~~~~~~~~~~~~l~~~gAVGdi~~ 186 (255)
T PF04198_consen 123 PELRDALLAEPSIREVLDLA----------------RKADIALVGIGSPSSDSTLYRSGYLSEEEIEELREKGAVGDICG 186 (255)
T ss_dssp HHHHHHHHTSHHHHHHHHHH----------------CT-SEEEEEEEEHHHHHHHCHHTTSCHHHHHHHHHTTEEEEETT
T ss_pred HHHHHHHHhChHHHHHHHHH----------------HhCCEEEEecCCCCCcchHHHhCCCCHHHHHHHHHCCcEEEhhc
Confidence 33211 1223333322 278999999998777555443221111 110 0111
Q ss_pred ecCCCC------CCCCceEEeCHHHHHhcCcEEEEEcCccHHHHHHHHHhCCCCCcccccccccCCCeEEEEEehhhhCC
Q psy1382 146 PIKDSP------KPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVDCERLPGFYINATEPNCNVEWYLDAEAGKL 219 (254)
Q Consensus 146 ~~~~~~------~~P~~riTlt~~~i~~Ak~vill~~G~~Ka~al~~~l~~~~~~Pas~l~~~~~~~~v~~~lD~~Aa~~ 219 (254)
.++|.. ....+.|.+++..|.+.++++.++.|.+|++++..+|.+ .- -+ +++.|++.|..
T Consensus 187 ~f~d~~G~~v~~~~~~r~igi~l~~L~~i~~~I~va~G~~K~~aI~aALr~---------g~----i~-~LItDe~tA~~ 252 (255)
T PF04198_consen 187 RFFDADGNIVDTPLNDRTIGISLEDLRKIPRVIAVAGGEEKAEAILAALRG---------GY----IN-VLITDESTARA 252 (255)
T ss_dssp EEEETTS-EEEHGGGGGBSB--HHHHHTSSEEEEEE-SGGGHHHHHHHHHT---------TS----TS-EEEEEHHHHHH
T ss_pred hhhcCCCCCccCcCcCceeecCHHHHhCCCcEEEEcCchhhHHHHHHHHhc---------CC----CC-EEEECHHHHHH
Confidence 122211 123578999999999999999999999999999999997 11 12 67899988865
Q ss_pred C
Q psy1382 220 I 220 (254)
Q Consensus 220 l 220 (254)
|
T Consensus 253 l 253 (255)
T PF04198_consen 253 L 253 (255)
T ss_dssp H
T ss_pred H
Confidence 4
No 17
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=96.82 E-value=0.015 Score=54.23 Aligned_cols=183 Identities=15% Similarity=0.118 Sum_probs=100.4
Q ss_pred eEEEEcCCchHHHHHHhhCcCCCCCCCCeEEEEcceeccCCCCchhHHHHHHHHhccCCCCCCCCcEEcCCCC-CCHHHH
Q psy1382 6 VLSCQSCGSLIKALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTS-LPVEEA 84 (254)
Q Consensus 6 ~~iaLsgGstp~~ly~~~L~~~~idws~v~vf~~DEr~Vp~d~~~Sn~~~~~~~ll~~~~~i~~~~v~~~~~~-~d~~~~ 84 (254)
-+|++++|+|-..+-+. +... +-.+++|+.+===. ...+..-+...+-..+=+.++ - .....+.+.- .+++..
T Consensus 116 dvigV~wGrTv~a~~~~-l~~~--~~~~~~vV~l~GG~-~~~~~~~~~~~~~~~~A~k~~-~-~~~~l~aP~~~~s~e~r 189 (321)
T COG2390 116 DVIGVGWGRTLSAVVDN-LPPA--PLRDVKVVQLTGGV-GHADGSYNANTIALRLAEKLG-A-ESYLLPAPLVASSPELR 189 (321)
T ss_pred CEEEEeccHHHHHHHHh-cCcC--ccCCeEEEECCCCC-CCCccccCHHHHHHHHHHHhC-C-cEEeeecCccCCCHHHH
Confidence 38999999999999888 6643 25667777653212 111112222333333434444 1 1223333332 333322
Q ss_pred HHHH-HHHHHhcCCCCCCCCCCCCCCCCCceeEEEecccCCcceeec----CCCCCCC---ccC---ceeEeecCCCC--
Q psy1382 85 AKDY-EQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSL----FPDHPLL---KER---SLWVAPIKDSP-- 151 (254)
Q Consensus 85 a~~Y-e~~I~~~~~~~~~~~~~~~~~~~p~fDl~lLGiG~DGHiAsl----fPg~~~l---~~~---~~~v~~~~~~~-- 151 (254)
..-- +..|++.+. .....|+++.|||.=.--+.+ |.....+ ... ...+-.++|..
T Consensus 190 ~~l~~e~~v~~vl~------------~~~~ad~alvGIG~~~~~~~~~~~g~~~~~~~~~l~~~gaVGdi~g~ffD~~G~ 257 (321)
T COG2390 190 EALLQEPSVREVLD------------LARSADLALVGIGSLSANSTLVRSGFIYEEELEALLAKGAVGDILGRFFDANGQ 257 (321)
T ss_pred HHHHhCcHHHHHHH------------HHHhCCEEEEecCCCcccchhhhhcCCCHHHHHHHHhCCcceecccceecCCCC
Confidence 1111 112222210 012679999999974322221 1110010 001 01112233321
Q ss_pred ----CCCCceEEeCHHHHHhcCcEEEEEcCccHHHHHHHHHhCCCCCcccccccccCCCeEEEEEehhhhCCC
Q psy1382 152 ----KPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVDCERLPGFYINATEPNCNVEWYLDAEAGKLI 220 (254)
Q Consensus 152 ----~~P~~riTlt~~~i~~Ak~vill~~G~~Ka~al~~~l~~~~~~Pas~l~~~~~~~~v~~~lD~~Aa~~l 220 (254)
....+-|++++..|.++.+++.+|.|+.|++++..+|.+ . --.+++.|+.+|..|
T Consensus 258 ~~~~~ln~r~igl~L~~l~~ip~vI~vAgG~~K~~AI~aaL~g---------g-----~~n~LITDe~tA~~l 316 (321)
T COG2390 258 PVDTPLNDRVIGLSLDDLRQIPKVIAVAGGESKAEAILAALRG---------G-----YINVLITDEATAEAL 316 (321)
T ss_pred CccccccCceecCCHHHHhcCCcEEEEeCCcccHHHHHHHHhC---------C-----CCCEEEeCHHHHHHH
Confidence 233568999999999999999999999999999999997 1 223678999988776
No 18
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=93.05 E-value=0.24 Score=45.94 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=44.1
Q ss_pred CceEEeCHHHHHhcCcEEEEEcCccHHHHHHHHHhCCCCCcccccccccCCCeEEEEEehhhhCCC
Q psy1382 155 PERVTITFPVIHKARNIILYLIGAGKADIIKRILVDCERLPGFYINATEPNCNVEWYLDAEAGKLI 220 (254)
Q Consensus 155 ~~riTlt~~~i~~Ak~vill~~G~~Ka~al~~~l~~~~~~Pas~l~~~~~~~~v~~~lD~~Aa~~l 220 (254)
.+.|.+++..|.+.++++.+|.|.+|++++..+|.+ . . --+++.|+++|..|
T Consensus 262 ~r~igi~le~Lk~ip~~I~vA~G~~K~~Ai~aALrg---------g-~----i~~LITDe~tA~~l 313 (318)
T PRK15418 262 NELIGLPLSSLKTIPTVIGVAGGEEKAEAIIAALKG---------G-Y----INALVTDEKTARAI 313 (318)
T ss_pred cceecCCHHHHcCCCCEEEEecCHHHHHHHHHHHhc---------C-C----CCEEEECHHHHHHH
Confidence 347899999999999999999999999999999997 1 1 12578999998765
No 19
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=69.60 E-value=8.9 Score=32.10 Aligned_cols=97 Identities=18% Similarity=0.198 Sum_probs=47.8
Q ss_pred eEEEEcCCchHHHHHHhhCcCC--CCCCCCeEEEEcceeccCCCCchhHHHHHHHHhccCCCCCCCCcEEcCCC----CC
Q psy1382 6 VLSCQSCGSLIKALAEDILPKV--RTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNT----SL 79 (254)
Q Consensus 6 ~~iaLsgGstp~~ly~~~L~~~--~idws~v~vf~~DEr~Vp~d~~~Sn~~~~~~~ll~~~~~i~~~~v~~~~~----~~ 79 (254)
+.||||||..-..+... |.+. ...+ ++.++.+|..+-+ .......++++ +.+.++ |+- .+..++. ..
T Consensus 2 i~va~SGG~DS~~Ll~~-l~~~~~~~~~-~~~~~~vdh~~~~--~s~~~~~~v~~-~~~~~~-i~~-~~~~~~~~~~~~~ 74 (182)
T PF01171_consen 2 ILVAVSGGKDSMALLHL-LKELRRRNGI-KLIAVHVDHGLRE--ESDEEAEFVEE-ICEQLG-IPL-YIVRIDEDRKKGS 74 (182)
T ss_dssp EEEE--SSHHHHHHHHH-HHHHHTTTTT-EEEEEEEE-STSC--CHHHHHHHHHH-HHHHTT--EE-EEEE--CHCCTTS
T ss_pred EEEEEcCCHHHHHHHHH-HHHHHHhcCC-CeEEEEEecCCCc--ccchhHHHHHH-HHHhcC-Cce-EEEEeeeeecccC
Confidence 67999999877777777 6653 3444 8999999987621 22223344444 334455 432 2333332 23
Q ss_pred CHHHHHH--HHHHHHHhcCCCCCCCCCCCCCCCCCceeEEEecccCCccee
Q psy1382 80 PVEEAAK--DYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTC 128 (254)
Q Consensus 80 d~~~~a~--~Ye~~I~~~~~~~~~~~~~~~~~~~p~fDl~lLGiG~DGHiA 128 (254)
..+..|+ +|+...+-.. --++|.+++ ||.+
T Consensus 75 ~~e~~aR~~Ry~~l~~~a~--------------~~g~~~i~~-----GHh~ 106 (182)
T PF01171_consen 75 NIEECARELRYQFLREIAK--------------EEGCNKIAL-----GHHL 106 (182)
T ss_dssp TCHHHHHHHHHHHHHHHHH--------------TTT-CEEE--------BH
T ss_pred CHHHHHHHHHHHHHHHhhh--------------cccccceee-----cCcC
Confidence 4555555 4443322211 116888888 6765
No 20
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=58.13 E-value=18 Score=30.72 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=30.3
Q ss_pred CCCeEEEEcCCc-hHHHHHHhhCc--CCCCCCCCeEEEEcceec
Q psy1382 3 LPGVLSCQSCGS-LIKALAEDILP--KVRTDFSKWKIFFCDERM 43 (254)
Q Consensus 3 ~~~~~iaLsgGs-tp~~ly~~~L~--~~~idws~v~vf~~DEr~ 43 (254)
.....|+|+||. |-..+++. +. +..+..+.+-+++.+.+|
T Consensus 96 ~sda~I~lPGG~GTL~El~e~-~~~~qlg~~~kPiil~n~~g~~ 138 (178)
T TIGR00730 96 LADAFIAMPGGFGTLEELFEV-LTWAQLGIHQKPIILFNVNGHF 138 (178)
T ss_pred hCCEEEEcCCCcchHHHHHHH-HHHHHcCCCCCCEEEECCcchH
Confidence 457899999996 88888877 43 334556788888888887
No 21
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=57.18 E-value=35 Score=30.44 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=30.3
Q ss_pred CCeEEEEcCCchHHHHHHhhCcCCCCCCCCeEEEEcceeccCC
Q psy1382 4 PGVLSCQSCGSLIKALAEDILPKVRTDFSKWKIFFCDERMVPY 46 (254)
Q Consensus 4 ~~~~iaLsgGstp~~ly~~~L~~~~idws~v~vf~~DEr~Vp~ 46 (254)
..+.||||||..-..+... |.+..-. -++..+.+|+.+-+.
T Consensus 22 ~~ilVavSGGkDS~~ll~~-L~~l~~~-~~~~a~~Vd~~~~~~ 62 (298)
T COG0037 22 YKILVAVSGGKDSLALLHL-LKELGRR-IEVEAVHVDHGLRGY 62 (298)
T ss_pred CeEEEEeCCChHHHHHHHH-HHHhccC-ceEEEEEecCCCCCc
Confidence 5789999999877777666 5553222 477889999998653
No 22
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=40.24 E-value=90 Score=22.79 Aligned_cols=36 Identities=6% Similarity=-0.040 Sum_probs=23.5
Q ss_pred eEEEEcCCchHHHHHHhhCcCC-CCCCCCeEEEEccee
Q psy1382 6 VLSCQSCGSLIKALAEDILPKV-RTDFSKWKIFFCDER 42 (254)
Q Consensus 6 ~~iaLsgGstp~~ly~~~L~~~-~idws~v~vf~~DEr 42 (254)
+.+++.++.....+.+. .... +..-.+++++++.+.
T Consensus 2 ilv~i~~~~~~~~~l~~-a~~~a~~~~~~i~~l~v~~~ 38 (130)
T cd00293 2 ILVAVDGSEESERALRW-AARLARRLGAELVLLHVVDP 38 (130)
T ss_pred EEEEeCCCHHHHHHHHH-HHHHHHhcCCEEEEEEEecC
Confidence 56788887777777766 3332 223477888887654
No 23
>KOG3363|consensus
Probab=36.83 E-value=21 Score=30.44 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=16.2
Q ss_pred CceeEEEecccCCcceeec
Q psy1382 112 PRFDSLLLGLGPDGHTCSL 130 (254)
Q Consensus 112 p~fDl~lLGiG~DGHiAsl 130 (254)
|.+|+.++|+|.+-|.--+
T Consensus 110 PkidlLIvG~Gd~~~p~~v 128 (196)
T KOG3363|consen 110 PKIDLLIVGCGDKKHPDKV 128 (196)
T ss_pred CCccEEEEecCCcCCchhc
Confidence 6899999999999997533
No 24
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=30.09 E-value=47 Score=26.58 Aligned_cols=46 Identities=11% Similarity=0.067 Sum_probs=29.2
Q ss_pred CeEEEEcCCc-hHHHHHHhhCcC--CCCCCC-CeEEEEcceeccCCCCchhHHHHHH
Q psy1382 5 GVLSCQSCGS-LIKALAEDILPK--VRTDFS-KWKIFFCDERMVPYDHPESTFGVYK 57 (254)
Q Consensus 5 ~~~iaLsgGs-tp~~ly~~~L~~--~~idws-~v~vf~~DEr~Vp~d~~~Sn~~~~~ 57 (254)
.+.|+|+||. |-..+++. +.- ....-+ .+.++..|++| +.-..+++
T Consensus 55 da~I~lPGG~GTl~El~~~-~~~~~l~~~~~~Piil~~~~g~w------~~l~~~l~ 104 (133)
T PF03641_consen 55 DAFIALPGGIGTLDELFEA-LTLMQLGRHNKVPIILLNIDGFW------DPLLEFLD 104 (133)
T ss_dssp SEEEEES-SHHHHHHHHHH-HHHHHTTSSTS-EEEEEECGGCC------HHHHHHHH
T ss_pred CEEEEEecCCchHHHHHHH-HHHHhhccccCCCEEEeCCcchH------HHHHHHHH
Confidence 5789999995 88888877 542 222222 57777778887 44445554
No 25
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=25.77 E-value=39 Score=17.84 Aligned_cols=12 Identities=33% Similarity=0.528 Sum_probs=9.5
Q ss_pred ccCCcceeecCC
Q psy1382 121 LGPDGHTCSLFP 132 (254)
Q Consensus 121 iG~DGHiAslfP 132 (254)
-|.-||++...|
T Consensus 6 C~~~GH~~~~Cp 17 (18)
T PF00098_consen 6 CGEPGHIARDCP 17 (18)
T ss_dssp TSCSSSCGCTSS
T ss_pred CCCcCcccccCc
Confidence 477899998766
No 26
>KOG0452|consensus
Probab=22.87 E-value=1.3e+02 Score=30.72 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=25.5
Q ss_pred HHHHHHHHhccCCCCCCCCcEEcCCCC-CCHHHHHHHHHH
Q psy1382 52 TFGVYKKLLLGKFPGLTEESFVPVNTS-LPVEEAAKDYEQ 90 (254)
Q Consensus 52 n~~~~~~~ll~~~~~i~~~~v~~~~~~-~d~~~~a~~Ye~ 90 (254)
|.+++++ |+++.+ +..+|.+.+. .|.-++|++|.+
T Consensus 729 NIrlvNk-l~~k~g---P~TvHiPsge~ldvFdAA~~Y~~ 764 (892)
T KOG0452|consen 729 NIRLVNK-LLSKVG---PKTVHIPSGEELDVFDAAERYKS 764 (892)
T ss_pred hhHHHHH-HhcccC---CceEecCCCCeecHhhHHHHHHh
Confidence 5566665 445543 6788988876 688889999986
No 27
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=22.68 E-value=88 Score=24.63 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=26.1
Q ss_pred CeEEEEcCCchHHHHHHhhCcCCCCCCCCeEEEEcceec
Q psy1382 5 GVLSCQSCGSLIKALAEDILPKVRTDFSKWKIFFCDERM 43 (254)
Q Consensus 5 ~~~iaLsgGstp~~ly~~~L~~~~idws~v~vf~~DEr~ 43 (254)
++.+++|||..-..+... +.+....-.++.++++|.-+
T Consensus 1 ~i~v~~SGGkDS~~ll~l-~~~~~~~~~~~~~v~~dtg~ 38 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHL-ALKALPELKPVPVIFLDTGY 38 (173)
T ss_pred CeEEEecCChHHHHHHHH-HHHhcccccCceEEEeCCCC
Confidence 367999999877777766 55432111478899999654
No 28
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=21.78 E-value=4.4e+02 Score=21.36 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=24.2
Q ss_pred CeEEEEcCCchHHHHHHhhCcCC--CCCCCCeEEEEcceec
Q psy1382 5 GVLSCQSCGSLIKALAEDILPKV--RTDFSKWKIFFCDERM 43 (254)
Q Consensus 5 ~~~iaLsgGstp~~ly~~~L~~~--~idws~v~vf~~DEr~ 43 (254)
++.+++|||..-..+... +.+. ..+ .++.++++|..+
T Consensus 1 ~v~v~~SGG~DS~vl~~l-~~~~~~~~~-~~v~~v~id~~~ 39 (185)
T cd01992 1 KILVAVSGGPDSMALLHL-LSELKPRLG-LRLVAVHVDHGL 39 (185)
T ss_pred CEEEEeCCCHHHHHHHHH-HHHHHHHcC-CcEEEEEecCCC
Confidence 478999999755555444 3332 122 368999999765
No 29
>KOG1800|consensus
Probab=21.47 E-value=1.3e+02 Score=29.34 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=21.6
Q ss_pred ceeEEEecccCCcceeecCCCCC
Q psy1382 113 RFDSLLLGLGPDGHTCSLFPDHP 135 (254)
Q Consensus 113 ~fDl~lLGiG~DGHiAslfPg~~ 135 (254)
.+|.++|--|.|||=.-.-||..
T Consensus 108 ~ydavvLaYGa~~dR~L~IPGe~ 130 (468)
T KOG1800|consen 108 NYDAVVLAYGADGDRRLDIPGEE 130 (468)
T ss_pred cccEEEEEecCCCCcccCCCCcc
Confidence 68999999999999999999986
Done!