RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1382
(254 letters)
>gnl|CDD|238694 cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily;
6PGL catalyzes the second step of the oxidative phase of
the pentose phosphate pathway, the hydrolyzation of
6-phosphoglucono-1,5-lactone (delta form) to
6-phosphogluconate. 6PGL is thought to guard against the
accumulation of the delta form of the lactone, which may
be toxic through its reaction with endogenous cellular
nucleophiles.
Length = 219
Score = 205 bits (524), Expect = 1e-66
Identities = 80/203 (39%), Positives = 110/203 (54%), Gaps = 18/203 (8%)
Query: 13 GSLIKALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESF 72
GS K L E + D+SK +F DER VP D P+S + + ++ LL + +
Sbjct: 32 GSTPKPLYELLAAAPALDWSKVHVFLGDERCVPPDDPDSNYRLAREALLSHVA-IPAANI 90
Query: 73 VPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFP 132
P+ T L E+AA YE+ +R+ F P FD +LLG+GPDGHT SLFP
Sbjct: 91 HPIPTELGPEDAAAAYEKELRALFGG------------VPPFDLVLLGMGPDGHTASLFP 138
Query: 133 DHP-LLKERSLWVAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILV-- 189
HP LL+E V + DSPKPPPER+T+T PV++ AR ++ + GA KA+ +KR L
Sbjct: 139 GHPALLEETDRLVVAVTDSPKPPPERITLTLPVLNNARRVVFLVTGAEKAEALKRALAGP 198
Query: 190 DCERLPGFYINATEPNCNVEWYL 212
D E LP + V W+L
Sbjct: 199 DPEELPAARVLP--RPGEVLWFL 219
>gnl|CDD|216349 pfam01182, Glucosamine_iso, Glucosamine-6-phosphate
isomerases/6-phosphogluconolactonase.
Length = 191
Score = 188 bits (479), Expect = 3e-60
Identities = 69/178 (38%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 13 GSLIKALAEDIL-PKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEES 71
GS K L E + D+S+ +F+ DER VP DHP+S + + ++ LL P + +
Sbjct: 30 GSTPKPLYELLASAPDDLDWSRVHVFWGDERCVPPDHPDSNYKLAREALLDNVP-IPAAN 88
Query: 72 FVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLF 131
P+ P E AA+ YE+ +R F E P FD +LLG+G DGHT SLF
Sbjct: 89 VHPI----PPEAAAERYERELRGLFGPE------------PPFDLVLLGMGEDGHTASLF 132
Query: 132 PDHP-LLKERSLWVAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRIL 188
P P LL+E V + DSPKPPPER+T+T P ++ AR + + GA KA+ ++ L
Sbjct: 133 PGSPALLEELDRPVVAVPDSPKPPPERITLTLPALNSARRVAFLVTGAEKAEALRAAL 190
>gnl|CDD|233308 TIGR01198, pgl, 6-phosphogluconolactonase. This enzyme of the
pentose phosphate pathway is often found as a part of a
multifunctional protein with [Energy metabolism, Pentose
phosphate pathway].
Length = 233
Score = 169 bits (429), Expect = 4e-52
Identities = 73/211 (34%), Positives = 102/211 (48%), Gaps = 13/211 (6%)
Query: 11 SCGSLIKALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEE 70
S G AL E L D+S+ +F DER VP DH +S G+ ++ LL + +
Sbjct: 35 SGGRSPIALLEA-LAAQPLDWSRIHLFLGDERYVPLDHADSNTGLAREALLDRVA-IPAS 92
Query: 71 SFVPVNTSLP-VEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCS 129
+ P+ T L +EEAA+ YEQ + + P+ P FD LLLG+GPDGHT S
Sbjct: 93 NIHPMPTELSDIEEAAELYEQELAA-----AFQPIVF-----PVFDLLLLGMGPDGHTAS 142
Query: 130 LFPDHPLLKERSLWVAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILV 189
LFP P L+E V + SPKPP ER+T+T P I+ AR + L + G K + + L
Sbjct: 143 LFPHTPALQETERLVTVLTKSPKPPHERITLTLPAINAARKVFLLIAGEEKRNALAEALA 202
Query: 190 DCERLPGFYINATEPNCNVEWYLDAEAGKLI 220
+ W LD A + +
Sbjct: 203 VEAEPYPLPAAGVLHSGKTLWLLDYAAARKL 233
>gnl|CDD|223440 COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate
isomerase/deaminase [Carbohydrate transport and
metabolism].
Length = 238
Score = 160 bits (406), Expect = 1e-48
Identities = 74/217 (34%), Positives = 101/217 (46%), Gaps = 28/217 (12%)
Query: 13 GSLIKALAEDI--LPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEE 70
GS AL E + LP+ + D+SK IF DER+VP D PES +G+ ++ L + E
Sbjct: 41 GSTPLALYEALVKLPQGQLDWSKVTIFNLDERVVPPDDPESNYGLMRRNLFDHID-IPAE 99
Query: 71 SFVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSL 130
+ S P E A YE + S FD +LLG+G DGH SL
Sbjct: 100 FIHNGDASDPDAECAARYEAKLPSAGG----------------FDLILLGMGEDGHIASL 143
Query: 131 FPDHPLLKERSL----WVAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKR 186
FP P L + + DSPK P ER+T+T P I A+ ++L + G KAD +K+
Sbjct: 144 FPGTPALDSATTEEANSRVFVGDSPKVPKERITLTLPTILDAKEVLLLVTGEEKADALKQ 203
Query: 187 ILVDCER--LPGFYINATEPNCNVEWYLDAEAGKLIP 221
L P + NV W+LD EA L+
Sbjct: 204 ALEGPVTELYPASILQLHP---NVTWFLDEEAASLLK 237
>gnl|CDD|166001 PLN02360, PLN02360, probable 6-phosphogluconolactonase.
Length = 268
Score = 140 bits (354), Expect = 1e-40
Identities = 81/218 (37%), Positives = 114/218 (52%), Gaps = 12/218 (5%)
Query: 6 VLSCQSCGSLIKALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFP 65
LS S S + L E K D++KW IF+ DER+V +H +S + + K LL K P
Sbjct: 47 ALSGGSLISFMGKLCEAPYNKT-VDWAKWYIFWADERVVAKNHADSNYKLAKDGLLSKVP 105
Query: 66 GLTEESFVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDG 125
+ + +N ++ EEAA DYE IR + + + P+FD +LLG+G DG
Sbjct: 106 VVPSHVY-SINDTVTAEEAATDYEFAIRQLV--KTRTIGVSDISDCPKFDLILLGMGSDG 162
Query: 126 HTCSLFPDHPLLKERSLWVAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIK 185
H SLFP+HP L+E+ WV I DSPKPPPER+T T PVI+ A N+ + G KA+ +
Sbjct: 163 HVASLFPNHPALEEKDDWVTFITDSPKPPPERITFTLPVINSASNVAVVATGESKANAVH 222
Query: 186 RILVDCER------LPGFYINATEPNCNVEWYLDAEAG 217
+ D LP + T + W+LD A
Sbjct: 223 LAIDDVTEGPDAPSLPARMVQPT--KGKLVWFLDKPAA 258
>gnl|CDD|238693 cd01399, GlcN6P_deaminase, GlcN6P_deaminase:
Glucosamine-6-phosphate (GlcN6P) deaminase subfamily;
GlcN6P deaminase catalyzes the reversible conversion of
GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium.
The reaction is an aldo-keto isomerization coupled with
an amination or deamination. It is the last step of the
metabolic pathway of N-acetyl-D-glucosamine-6-phosphate
(GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that
is allosterically activated by GlcNAc6P.
Length = 232
Score = 62.5 bits (153), Expect = 1e-11
Identities = 51/219 (23%), Positives = 74/219 (33%), Gaps = 37/219 (16%)
Query: 15 LIKALAEDILPKVRTDFSKWKIFFCDERM-VPYDHPESTFGVYKKLLLGKFPGLTEESFV 73
LI+ E L FS F DE + +P DHP+S ++ L E +
Sbjct: 38 LIELHKEGGL-----SFSNVTTFNLDEYVGLPPDHPQSYHYFMRENLFDHIDIKPENIHI 92
Query: 74 PVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTC----- 128
P + +E + YE I D LLG+G +GH
Sbjct: 93 PDGNAADLEAECRRYEALIAEAGG----------------IDLQLLGIGENGHIGFNEPG 136
Query: 129 SLFPDHPLLKE-----RSLWVAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADI 183
S + R P + +T+ I KA+ I+L G GKA+
Sbjct: 137 SSLDSRTRVVTLDESTRQANARFFDGDEDVPTQAITMGIGTIMKAKEILLLATGEGKAEA 196
Query: 184 IKRILVD--CERLPGFYINATEPNCNVEWYLDAEAGKLI 220
+K+ L E P + PN V LD A +
Sbjct: 197 VKKALEGPVTEECPASILQ-LHPNVTV--ILDEAAASEL 232
>gnl|CDD|183470 PRK12358, PRK12358, putative 6-phosphogluconolactonase;
Provisional.
Length = 239
Score = 44.4 bits (105), Expect = 2e-05
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 115 DSLLLGLGPDGHTCSLFPDHPLLKERSLWVAPIK--------------DSPKPPPERVTI 160
D ++LGLG DGH C P + ++ V PI+ D P VT+
Sbjct: 120 DLVVLGLGADGHFCGNLPGTTHFHDETVEV-PIQGEMVDIVAHGELGGDFSLVPDSYVTM 178
Query: 161 TFPVIHKARNIILYLIGAGKADIIKRIL 188
I A+N++L + G GKA I+K++L
Sbjct: 179 GPKSIMAAKNLLLIVNGKGKAQILKKVL 206
>gnl|CDD|182064 PRK09762, PRK09762, galactosamine-6-phosphate isomerase;
Provisional.
Length = 232
Score = 42.9 bits (101), Expect = 5e-05
Identities = 43/200 (21%), Positives = 75/200 (37%), Gaps = 31/200 (15%)
Query: 2 NLPGVLSCQSCGS----LIKALAEDILPKVRTDFSKWKIFFCDERM-VPYDHPESTFGVY 56
+ P + C + G+ L E I + + D S+ DE + +P P +
Sbjct: 26 SKPDAVICLATGATPLLTYHYLVEKIH-QQQVDVSQLTFVKLDEWVDLPLTMPGTCETFL 84
Query: 57 KKLLLGKFPGLTEESFVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDS 116
++ ++ GL E+ + S + E + + + K L D
Sbjct: 85 QQHIVQPL-GLREDQLISFR-SEEINETECERVTNLIAR-----KGGL----------DL 127
Query: 117 LLLGLGPDGHTCSLFPDHPL--------LKERSLWVAPIKDSPKPPPERVTITFPVIHKA 168
+LGLG +GH P L L R+ +K + +P +T+ I A
Sbjct: 128 CVLGLGKNGHLGLNEPGESLQPACHISQLDARTQQHEMLKTAGRPVTRGITLGLKDILNA 187
Query: 169 RNIILYLIGAGKADIIKRIL 188
R ++L + G GK D +R L
Sbjct: 188 REVLLLVTGEGKQDATERFL 207
>gnl|CDD|179028 PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional.
Length = 261
Score = 39.8 bits (94), Expect = 5e-04
Identities = 42/190 (22%), Positives = 69/190 (36%), Gaps = 41/190 (21%)
Query: 15 LIKALAEDILPKVRTDFSKWKIFFCDERM-VPYDHPESTFGVY-KKLLLGKFPGLTEESF 72
LI+ + DFS+ F DE + +P DHPES + + ++ E
Sbjct: 52 LIELHKAGKV-----DFSRVTTFNLDEYVGLPADHPES-YRYFMRENFFDHVDIPPENIN 105
Query: 73 VPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHT----- 127
+ + E + YE+ I+S D +LG+G +GH
Sbjct: 106 LLNGNAPDPEAECRRYEEKIKSAGG----------------IDLQILGIGENGHIAFNEP 149
Query: 128 CSLFPDHPLLKE--------RSLWVA-PIKDSPKPPPERVTITFPVIHKARNIILYLIGA 178
S F +K S + I+ PK +T+ I A+ I+L G
Sbjct: 150 GSSFASRTRIKTLTEDTRIANSRFFDGDIEQVPK---YALTVGVGTILDAKEIMLLAPGH 206
Query: 179 GKADIIKRIL 188
KA+ +K +
Sbjct: 207 NKAEAVKAAV 216
>gnl|CDD|238258 cd00458, SugarP_isomerase, SugarP_isomerase: Sugar Phosphate
Isomerase family; includes type A ribose 5-phosphate
isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P)
deaminase, and 6-phosphogluconolactonase (6PGL). RPI
catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. GlcN6P deaminase catalyzes the
reversible conversion of GlcN6P to
D-fructose-6-phosphate (Fru6P) and ammonium, the last
step of the metabolic pathway of
N-acetyl-D-glucosamine-6-phosphate. 6PGL converts
6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the
second step of the oxidative phase of the pentose
phosphate pathway.
Length = 169
Score = 37.3 bits (86), Expect = 0.002
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 16 IKALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLL--GKFPGLTEESFV 73
K L E R + S F DER VP D +S F K L P +
Sbjct: 36 YKLLGEK---LKRGEISDIVGFPTDERYVPLDSDQSNFRQAKLLAFEHDIIPA---SNVH 89
Query: 74 PVNTSLPVEEAAKDYEQTIRS 94
V+TSLP+E+A + YE+ I
Sbjct: 90 YVDTSLPIEKACEKYEREILD 110
>gnl|CDD|140308 PTZ00285, PTZ00285, glucosamine-6-phosphate isomerase; Provisional.
Length = 253
Score = 35.1 bits (81), Expect = 0.022
Identities = 47/172 (27%), Positives = 68/172 (39%), Gaps = 30/172 (17%)
Query: 28 RTDFSKWKIFFCDERM-VPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTSLP-VEEAA 85
R FS F DE + +P DHP+S K+ + EE+ +N + P +EE
Sbjct: 60 RVSFSNVVTFNMDEYVGLPRDHPQSYHYFMKENFF-DHVDIKEENRHILNGTAPDLEEEC 118
Query: 86 KDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPL---LKERSL 142
+ YE+ IR+ D L G+G DGH P L + +SL
Sbjct: 119 RRYEEKIRAVGG----------------IDLFLAGIGTDGHIAFNEPGSSLDSRTRVKSL 162
Query: 143 WVAPIK--------DSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKR 186
I D K P +T+ I +AR ++L GA KA + R
Sbjct: 163 NQETIDANARFFGNDISKVPTMALTVGIRTIMEAREVLLLATGASKAIAVAR 214
>gnl|CDD|235005 PRK02122, PRK02122, glucosamine-6-phosphate deaminase-like protein;
Validated.
Length = 652
Score = 34.2 bits (79), Expect = 0.056
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 154 PPERVTITFPVIHKARNIILYLIGAGKADIIKRILVD--CERLPGFYINATEPNCNVEWY 211
P + +T+ I KAR I+L G KA IIKR + + +P Y+ PN
Sbjct: 209 PRKAITMGVGTILKARRIVLLAWGEHKAPIIKRAVEGEISDEVPASYLQ-EHPNATF--V 265
Query: 212 LDAEAGKLIPR 222
LD A + R
Sbjct: 266 LDLAAASELTR 276
>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 502
Score = 32.7 bits (75), Expect = 0.18
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 46 YDHPESTFGVYKKLLLGKFPGLTEESFVPVNTSL--PVEEAAKDYEQTIRSHFP 97
++ P TF Y LL+ PGL+ + VP N SL P+ + K E I + P
Sbjct: 5 FEEPSRTFSEY--LLV---PGLSSKECVPANVSLKTPLVKFKKGEESAITLNIP 53
>gnl|CDD|129593 TIGR00502, nagB, glucosamine-6-phosphate isomerase. The set of
proteins recognized by This model includes a closely
related pair from Bacillus subtilis, one of which is
uncharacterized but included as a member of the
orthologous set [Central intermediary metabolism, Amino
sugars].
Length = 259
Score = 30.2 bits (68), Expect = 0.89
Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 17/98 (17%)
Query: 30 DFSKWKIFFCDERM-VPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTSLPVEEAAKDY 88
F F DE + +HPES E + + +E + Y
Sbjct: 62 SFQNVTTFNMDEYAGLSEEHPESYHSFMHNNFFQHIDIKPENINILNGNAPDLEAECRRY 121
Query: 89 EQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGH 126
E+ IRS + D + G+GPDGH
Sbjct: 122 EEKIRS----------------YGGIDLFMGGIGPDGH 143
>gnl|CDD|217805 pfam03942, DTW, DTW domain. This presumed domain is found in
bacterial and eukaryotic proteins. Its function is
unknown. The domain contains multiple conserved motifs
including a DTXW motif that this domain has been named
after.
Length = 196
Score = 27.7 bits (62), Expect = 4.4
Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 101 KDPLPPGQAH-WPRF----DSLLLGLGPDGHTCSLFPDHPLLKERSLWVAPIKDSPKPP 154
L +A W R L L PD LFP + + V D KPP
Sbjct: 49 ALLLADTRAFTWSRTEPDPRLLELLALPDYQVVLLFPGETSEELEEVSVESTLDEGKPP 107
>gnl|CDD|227064 COG4720, COG4720, Predicted membrane protein [Function unknown].
Length = 177
Score = 27.7 bits (62), Expect = 4.6
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 9/92 (9%)
Query: 147 IKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVDCERLPGFYINATEPNC 206
+KD P + T VIH +I L G + + + ++
Sbjct: 66 LKDLLSGYPSWMFFTL-VIHGLIGLIAGLFGKREMLSSGKKTI-------IWLGIVLGLA 117
Query: 207 N-VEWYLDAEAGKLIPRNEPILKEWGSEIEAF 237
V WYL A + E + K + I
Sbjct: 118 IMVGWYLLAPYLDYLGWAEALGKIGTNGIAGI 149
>gnl|CDD|100089 cd03087, PGM_like1, This archaeal PGM-like
(phosphoglucomutase-like) protein of unknown function
belongs to the alpha-D-phosphohexomutase superfamily
which includes several related enzymes that catalyze a
reversible intramolecular phosphoryl transfer on their
sugar substrates. The alpha-D-phosphohexomutases include
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 439
Score = 28.3 bits (64), Expect = 4.9
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 38 FCDE--RMVPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTSLPVEEAAKDYEQTIR 93
F DE R + D + K LL + G PV+ S+ VE+ ++ +
Sbjct: 241 FVDEKGRFIDGDK---LLALLAKYLLEEGGGKV---VTPVDASMLVEDVVEEAGGEVI 292
>gnl|CDD|149159 pfam07925, RdRP_5, Reovirus RNA-dependent RNA polymerase lambda 3.
The sequences in this family are similar to the reoviral
minor core protein lambda 3, which functions as a
RNA-dependent RNA polymerase within the protein capsid.
It is organised into 3 domains. N- and C-terminal domains
create a 'cage' that encloses a conserved central
catalytic domain within a hollow centre; this catalytic
domain is arranged to form 'fingers', 'palm' and 'thumb'
subdomains. Unlike other RNA polymerases, like HIV
reverse transcriptase and T7 RNA polymerase, lambda 3
protein binds template and substrate with only localised
rearrangements, and catalytic activity can occur with
little structural change. However, the structure of the
catalytic complex is similar to that of other polymerase
catalytic complexes with known structure.
Length = 1271
Score = 28.0 bits (62), Expect = 5.6
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 99 EFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLKERSLWVAPIKDSPKPPPERV 158
E K + G++ W R G G SLF D P W +D+ KP P V
Sbjct: 987 ELKSRVLRGRSEWERLTDTY-GAGIISRVPSLF-DVP-----HKWYLAGRDAAKPTPSEV 1039
Query: 159 TITFPVIHKAR 169
+ +AR
Sbjct: 1040 AEMDETLMRAR 1050
>gnl|CDD|219340 pfam07224, Chlorophyllase, Chlorophyllase. This family consists of
several plant specific Chlorophyllase proteins
(EC:3.1.1.14). Chlorophyllase (Chlase) is the first
enzyme involved in chlorophyll (Chl) degradation and
catalyzes the hydrolysis of ester bond to yield
chlorophyllide and phytol.
Length = 307
Score = 27.5 bits (61), Expect = 6.3
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 144 VAPIKDSPKPPPERVTITFPVIHKARNIILYLIG 177
V PPP+ + I P ++L+L G
Sbjct: 21 VDRSSRYSPPPPKPLIIITPKEAGTYPVVLFLHG 54
>gnl|CDD|224571 COG1657, SqhC, Squalene cyclase [Lipid metabolism].
Length = 517
Score = 27.4 bits (61), Expect = 8.4
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 154 PPERVTITFPVIHKARNIILYLIGAGKADIIKRILVDCERLPGFYINATEP 204
P V T P + KAR+ IL+ G K+ I + + + + P
Sbjct: 2 RPLGVPATDPALLKARSFILWRGGISKSRIWTKCRLAVLGAYIWRAPSAPP 52
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.141 0.455
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,745,245
Number of extensions: 1331101
Number of successful extensions: 1132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1112
Number of HSP's successfully gapped: 30
Length of query: 254
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 159
Effective length of database: 6,723,972
Effective search space: 1069111548
Effective search space used: 1069111548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)