RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1382
(254 letters)
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid,
hydrolase, structural genomics; 2.15A {Mycobacterium
tuberculosis}
Length = 268
Score = 216 bits (552), Expect = 2e-70
Identities = 66/217 (30%), Positives = 98/217 (45%), Gaps = 21/217 (9%)
Query: 13 GSLIKALAEDILPKV-RTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEES 71
G AL + + + ++SK +F+ DER VP D E ++ LL +
Sbjct: 64 GGNGIALLRYLSAQAQQIEWSKVHLFWGDERYVPEDDDERNLKQARRALLNHVD-IPSNQ 122
Query: 72 FVPVNTSL-----PVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGH 126
P+ S ++ AA YEQ + + P FD LLG+GP+GH
Sbjct: 123 VHPMAASDGDFGGDLDAAALAYEQVLAASAA---------PGDPAPNFDVHLLGMGPEGH 173
Query: 127 TCSLFPDHPLLKERSLWVAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKR 186
SLFP P + E + V + DSPKPPP R+T+T P I ++R + L + G GKAD +
Sbjct: 174 INSLFPHSPAVLESTRMVVAVDDSPKPPPRRITLTLPAIQRSREVWLLVSGPGKADAVAA 233
Query: 187 ILV--DCERLPGFYINATEPNCNVEWYLDAEAGKLIP 221
+ D +P + N W LD +A +P
Sbjct: 234 AIGGADPVSVPAAGAVGRQ---NTLWLLDRDAAAKLP 267
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A
{Mycobacterium abscessus}
Length = 251
Score = 211 bits (540), Expect = 7e-69
Identities = 60/216 (27%), Positives = 90/216 (41%), Gaps = 21/216 (9%)
Query: 13 GSLIKALAEDILPKV-RTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEES 71
G AL + + D++ +F+ D+R VP PE + LL +
Sbjct: 48 GGTGIALLKHLRDVASGLDWTNVHVFWGDDRYVPKTDPERNAWQAWEALLEHVN-FPLRN 106
Query: 72 FVPVNTSL-----PVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGH 126
+ S ++ AA YEQ + ++ P FD LLG+G +GH
Sbjct: 107 MHAMPNSESEYGTDLDAAALAYEQLLAANAE---------PGQDCPAFDVHLLGMGGEGH 157
Query: 127 TCSLFPDHPLLKERSLWVAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKR 186
SLFP +KE V + DSPKPPP+R+T+T P I ++R + L + G KAD +
Sbjct: 158 INSLFPHTDAVKETQRLVVAVPDSPKPPPQRITLTLPAIQRSREVWLVVSGEAKADAVAA 217
Query: 187 ILV--DCERLPGFYINATEPNCNVEWYLDAEAGKLI 220
+ D +P E W LD A +
Sbjct: 218 AVGGADPVDVPAAGAKGIE---RTVWLLDEAAASQL 250
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, carboxylic
ester hydrolase; 2.10A {Mycobacterium smegmatis}
Length = 248
Score = 210 bits (538), Expect = 1e-68
Identities = 61/216 (28%), Positives = 93/216 (43%), Gaps = 23/216 (10%)
Query: 13 GSLIKALAEDILPKV-RTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEES 71
G L + + + D+SK I++ DER VP D E ++ LL + +
Sbjct: 48 GGTGIGLLKRVRERSGEIDWSKVHIYWGDERFVPQDDDERNDKQAREALLDHIG-IPPVN 106
Query: 72 FVPVNTSL-----PVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGH 126
+ S +E AA Y Q + ++F + P FD LLG+G +GH
Sbjct: 107 VHAMAASDGEFGDDLEAAAAGYAQLLSANFD-----------SSVPGFDVHLLGMGGEGH 155
Query: 127 TCSLFPDHPLLKERSLWVAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKR 186
SLFPD ++E V + DSPKPPP R+T+T P + +R + L + G KAD +
Sbjct: 156 VNSLFPDTDAVRETERLVVGVSDSPKPPPRRITLTLPAVQNSREVWLVVSGEAKADAVAA 215
Query: 187 ILV--DCERLPGFYINATEPNCNVEWYLDAEAGKLI 220
+ D +P E W +D A +
Sbjct: 216 AVGGADPVDIPAAGAVGRE---RTVWLVDEAAAAKL 248
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima}
SCOP: c.124.1.1 PDB: 1pbt_A
Length = 232
Score = 209 bits (533), Expect = 5e-68
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 23/201 (11%)
Query: 13 GSLIKALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESF 72
G + E L + + +++ F DER VP D +S F ++L + + +
Sbjct: 54 GRTPLPVYE-KLAEQKFPWNRIHFFLSDERYVPLDSDQSNFRNINEVLFSRAK-IPSGNV 111
Query: 73 VPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFP 132
V+TSLP+E+A + YE+ IRS +FD +LG+GPDGH S+F
Sbjct: 112 HYVDTSLPIEKACEKYEREIRSATD---------------QFDLAILGMGPDGHVASIFD 156
Query: 133 DHPLLKERSLWVAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVDCE 192
K+ V S P RVT+TF ++ + ++ + G K + + IL D
Sbjct: 157 LETGNKDN--LVTFTDPSGDPKVPRVTLTFRALNTSLYVLFLIRGKEKINRLTEILKD-T 213
Query: 193 RLPGFYINATEPNCNVEWYLD 213
LP +++ E W++
Sbjct: 214 PLPAYFVRGKE---KTVWFVG 231
>1y89_A DEVB protein; structural genomics, protein structure initiative,
PSI, MIDW center for structural genomics, MCSG; HET:
2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Length = 238
Score = 207 bits (530), Expect = 1e-67
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 20/210 (9%)
Query: 13 GSLIKALAE---DILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTE 69
GS K L + + ++ DER V D ES +G LL K +
Sbjct: 38 GSTPKMLFKLLASQPYANDIQWKNLHFWWGDERCVAPDDAESNYGEANALLFSKIN-MPA 96
Query: 70 ESFVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCS 129
++ + + A+ + Q + P + P FD +LLG+G DGHT S
Sbjct: 97 QNIHRILGENEPQAEAERFAQAMAHVIP---------TENGTPVFDWILLGVGADGHTAS 147
Query: 130 LFPDHPLLKERSLWVAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRIL- 188
LFP + ++ + P+ RV+ T V+ A+ I ++GAGKA+I+++I
Sbjct: 148 LFPGQTDYADA--NLSVVASHPESGQLRVSKTAKVLQAAKRISYLVLGAGKAEIVEQIHT 205
Query: 189 --VDCERLPGFYINATEPNCNVEWYLDAEA 216
+ P I++T EWYLD++A
Sbjct: 206 TPAEQLPYPAAKIHSTSG--VTEWYLDSDA 233
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate
pathway, hydrolase, zinc binding site; HET: FLC; 2.00A
{Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Length = 266
Score = 203 bits (519), Expect = 1e-65
Identities = 61/229 (26%), Positives = 96/229 (41%), Gaps = 27/229 (11%)
Query: 13 GSLIKALAEDILPKV---RTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTE 69
GS K + + + + F DERMVP D +S + + +++LL P +
Sbjct: 45 GSTPKMTYARLHDEHLNLLREKRALRFFMGDERMVPADSTDSNYNMAREVLLHDIP---D 101
Query: 70 ESFVPVNTSLP----------VEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLL 119
+ P +TS A+ Y + + S P + P FD +LL
Sbjct: 102 DLVFPFDTSAVTPSAEATSADAMRVAEAYGKQLASLLP---LKSVGEAGPKVPVFDVVLL 158
Query: 120 GLGPDGHTCSLFPDHPLLKERSLWVAPIK----DSPKPPPERVTITFPVIHKARNIILYL 175
GLG DGHT S+FP KE V ++ KP RVT++ I +ARN+I+
Sbjct: 159 GLGSDGHTASIFPGSQAEKETDGKVVVSVGFPSETMKPKVWRVTLSPATIMQARNVIVLA 218
Query: 176 IGAGKADIIKRIL--VDCERLPGFYINATEPNCNVEWYLDAEAGKLIPR 222
GA K ++ IL + ++ E NV + LD E + + +
Sbjct: 219 TGAEKKWVVDGILADTAHKAPVARFLRGCEG--NVSFLLDKEIAENLAK 265
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A
{Shewanella baltica}
Length = 233
Score = 188 bits (480), Expect = 4e-60
Identities = 49/207 (23%), Positives = 79/207 (38%), Gaps = 24/207 (11%)
Query: 13 GSLIKALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESF 72
GS L + +L D+S I DER V D S + ++ LL + F
Sbjct: 46 GSTPLKLFQ-LLSMKSIDWSDVYITLADERWVEADADASNERLVREHLLQNRA--SNAKF 102
Query: 73 VP-VNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLF 131
N E A +++ FD ++LG+G DGHTCS F
Sbjct: 103 RGLKNMFSTAEAGADMAAESLS---------------NFPRPFDVVVLGMGNDGHTCSWF 147
Query: 132 PDHPLLKE--RSLWVAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRIL- 188
P L+ + + + P R+T++ I +R I L+L+G K + ++ L
Sbjct: 148 PCSAELENALTTQALCVATNPTTAPHGRITLSKSAILNSRQIYLHLVGEQKLSVYRQALE 207
Query: 189 -VDCERLPGFYINATEPNCNVEWYLDA 214
D +P + A V+ + A
Sbjct: 208 SDDVHAMPIRAVLAQRKT-PVDVFWSA 233
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural
genomics of pathogen protozoa consortium, SGPP, leish
hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Length = 267
Score = 189 bits (481), Expect = 9e-60
Identities = 55/225 (24%), Positives = 86/225 (38%), Gaps = 20/225 (8%)
Query: 13 GSLIKALAEDI--LPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFP----- 65
GS K L E++ + DER++ D +S F + K LL P
Sbjct: 46 GSTPKRLYEELHEKDLALLQQHAVQFILGDERLLSEDDEQSNFSMATKALLRDVPSSDVI 105
Query: 66 -----GLTEESFVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLG 120
S A+DYE + + P + P D +LLG
Sbjct: 106 SIDRRAALATSKDEKGGLDGAWAVAQDYEVKLLNCLP---CKQINGTAKSVPVVDIVLLG 162
Query: 121 LGPDGHTCSLFPDHPLLKERSLWVAPIKDSPKPPP--ERVTITFPVIHKARNIILYLIGA 178
G DGHT S+FPD + V+ SP P RVT++ VI A+++++ G
Sbjct: 163 FGSDGHTASIFPDSVAATDEEHVVSVSFPSPTMSPKVWRVTLSKTVIQYAKHVVVLAAGK 222
Query: 179 GKADIIKRILV--DCERLPGFYINATEPNCNVEWYLDAEAGKLIP 221
K +++ +L + LP + +V LD AG+ +
Sbjct: 223 DKNWVVRGVLSESPTDPLPVSRFLR-DCRGSVTLLLDPGAGEGVC 266
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.33A {Neisseria
gonorrhoeae}
Length = 232
Score = 184 bits (470), Expect = 1e-58
Identities = 48/207 (23%), Positives = 78/207 (37%), Gaps = 24/207 (11%)
Query: 13 GSLIKALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESF 72
G A L + D+ I DER+VP +H +S G+ ++ LL +
Sbjct: 43 GRSPIAFFN-ALSQKDLDWKNVGITLADERIVPTNHADSNTGLVREYLLKNKA--AAAVW 99
Query: 73 VP-VNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLF 131
+P V E D + H+ + D L+LG+G DGHT S+F
Sbjct: 100 IPMVEDGKTETELHPDAV--------------VDYALKHYKQPDVLILGMGNDGHTASIF 145
Query: 132 PDHPLLK---ERSLWVAPIKDSP-KPPPERVTITFPVIHKARNIILYLIGAGKADIIKRI 187
P P + + S VA + +P P ER+++T I ++ L + G K + +
Sbjct: 146 PKAPQFQTAIDGSAGVALVHTTPVTAPHERISMTLDAIAHTGHVFLAIQGEEKKAVFDQA 205
Query: 188 LVDCER-LPGFYINATEPNCNVEWYLD 213
R P + N +
Sbjct: 206 AQGENREYPISLVLNH-QGVNCHVFYA 231
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative hydrolase;
1.75A {Chromohalobacter salexigens}
Length = 226
Score = 179 bits (456), Expect = 2e-56
Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 23/188 (12%)
Query: 13 GSLIKALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESF 72
GS K L +++ + DER V D +S + ++ LL E F
Sbjct: 42 GSTPKPFFT-SLAAKALPWARVDVTLADERWVTADDADSNARLVRETLLVGPA--AEACF 98
Query: 73 VPVNTSL-PVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLF 131
P+ T E + + + S +++LG+G DGHT SLF
Sbjct: 99 HPLTTDDDTPEAGVETVAERLESLPW---------------PASAVILGMGGDGHTASLF 143
Query: 132 PDHPLLKE--RSLWVAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILV 189
PD L + A + +P P R+T++ + A +L++ G K ++ L
Sbjct: 144 PDSEQLATALETTSAAVVVHAPSVPQARITLSASRLADAGLHVLHITGNDKRRVLAEALA 203
Query: 190 --DCERLP 195
D +LP
Sbjct: 204 GDDVRQLP 211
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase,
malaria, carbohydrate metabolism, glucose metabolism,
NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium
vivax}
Length = 312
Score = 175 bits (445), Expect = 7e-54
Identities = 42/209 (20%), Positives = 73/209 (34%), Gaps = 46/209 (22%)
Query: 13 GSLIKALAEDI--LPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEE 70
G + ++I + ++ D SK F DER DH S + K L +E
Sbjct: 69 GKTPIDVYKNIALVKDIKIDTSKLIFFIIDERYKRDDHKFSNYNNIKFLFESLKI-NEKE 127
Query: 71 SFVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSL 130
+TS + E +DY + I++ + + D +LG+G D H SL
Sbjct: 128 QLYRPDTSKNIVECVRDYNEKIKNMVK------------KYTKVDIAILGMGSDFHIASL 175
Query: 131 FPD-------------------------------HPLLKERSLWVAPIKDSPKPPPERVT 159
FP+ + L +V + +R+T
Sbjct: 176 FPNIFFNIYMNNYQNSYIYDESSIKVANSNDTSDNDNLDLLKEYVYFTTTNNFDVRKRIT 235
Query: 160 ITFPVIHKARNIILYLIGAGKADIIKRIL 188
++ ++ A + I L K D+ K +L
Sbjct: 236 VSLDLLGNASSKIFLLNSTDKLDLWKNML 264
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition,
fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis}
PDB: 2bkv_A*
Length = 242
Score = 60.0 bits (146), Expect = 5e-11
Identities = 40/205 (19%), Positives = 66/205 (32%), Gaps = 32/205 (15%)
Query: 30 DFSKWKIFFCDERM-VPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTSLPVEEAAKDY 88
F DE + D P S F+P + +E + Y
Sbjct: 57 SFQNITTVNLDEYAGLSSDDPNSYHFYMNDRFFQHIDSKPSRHFIPNGNADDLEAECRRY 116
Query: 89 EQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPL--------LKER 140
EQ + S D LLG+G +GH P L E+
Sbjct: 117 EQLVDSLGD----------------TDIQLLGIGRNGHIGFNEPGTSFKSRTHVVTLNEQ 160
Query: 141 SLWVAP--IKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVD--CERLPG 196
+ P + +T+ I ++ I+L + G KA+ ++++L E P
Sbjct: 161 TRQANARYFPSIDSVPKKALTMGIQTILSSKRILLLISGKSKAEAVRKLLEGNISEDFPA 220
Query: 197 FYINATEPNCNVEWYLDAEAGKLIP 221
++ + V +D EA L P
Sbjct: 221 SALH-LHSDVTV--LIDREAASLRP 242
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme,
conformational disorder, conformational differences,
hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP:
c.124.1.1
Length = 289
Score = 60.5 bits (147), Expect = 5e-11
Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 32/173 (18%)
Query: 30 DFSKWKIFFCDERM-VPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTSLPVEEAAKDY 88
F K F DE + +P DHPES E + + ++ ++ +
Sbjct: 62 SFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAF 121
Query: 89 EQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTC-----SLFPDHPLLKERSLW 143
E+ I++ + + G+GPDGH S +K L
Sbjct: 122 EEKIKAAGG----------------IELFVGGIGPDGHIAFNEPGSSLVSRTRVKT--LA 163
Query: 144 VAPIK--------DSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRIL 188
+ I + K P +T+ + AR +++ + GA KA + + +
Sbjct: 164 MDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAI 216
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic
effects, aldose-ketose isomerase multiple conformers,
isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP:
c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A
1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Length = 266
Score = 60.1 bits (146), Expect = 6e-11
Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 28/171 (16%)
Query: 30 DFSKWKIFFCDERM-VPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTSLPVEEAAKDY 88
F F DE + +P +HPES + + E + + ++ + Y
Sbjct: 62 SFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQY 121
Query: 89 EQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPL--------LKER 140
E+ IRS+ + G+G DGH P L L
Sbjct: 122 EEKIRSYGK----------------IHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHD 165
Query: 141 SL-WVAPIKDSP--KPPPERVTITFPVIHKARNIILYLIGAGKADIIKRIL 188
+ + D+ + P +T+ + A +++ ++G+ KA ++ +
Sbjct: 166 TRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAV 216
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET:
BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Length = 234
Score = 58.4 bits (142), Expect = 2e-10
Identities = 32/183 (17%), Positives = 66/183 (36%), Gaps = 35/183 (19%)
Query: 17 KALAEDILPKVRTDFSKWKIFFCDERM-VPYDHPESTFGVYKKLLLGKFPGLTEESFVPV 75
K + E L DFS DE + + D +S K+ L P ++S++P
Sbjct: 45 KEIRESHL-----DFSDMVSINLDEYVGLSADDKQSYAYFMKQNLFAAKP--FKKSYLPN 97
Query: 76 NTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTC------S 129
+ + + + Y+Q + + D +LG+G + H +
Sbjct: 98 GLAADLAKETEYYDQILAQY-----------------PIDLQILGIGRNAHIGFNEPGTA 140
Query: 130 LFPDHPL--LKERSLWVAP--IKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIK 185
L L ++ + + P + +++ I A+ I+L G KA+ +
Sbjct: 141 FSSQTHLVDLTPSTIAANSRFFEKAEDVPKQAISMGLASIMSAKMILLMAFGEEKAEAVA 200
Query: 186 RIL 188
++
Sbjct: 201 AMV 203
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI,
infectious disease, LYME DI non-hodgkin lymphomas,
neuroborreliosis; 2.20A {Borrelia burgdorferi}
Length = 289
Score = 54.4 bits (131), Expect = 7e-09
Identities = 32/173 (18%), Positives = 57/173 (32%), Gaps = 32/173 (18%)
Query: 30 DFSKWKIFFCDERM-VPYDHPESTFGVYKKLLLGKFPGLTEESFVPVNTSLPVEEAAKDY 88
F F DE + + +HPES E + + +++ ++Y
Sbjct: 83 SFQNVITFNMDEYIGIEENHPESYHSFMWNNFFSHIDIKKENINILNGNASNLKKECEEY 142
Query: 89 EQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTC-----SLFPDHPLLKERSLW 143
E+ I+S + G+GPDGH S +K L
Sbjct: 143 EKKIKSFGGIML----------------FVGGIGPDGHIAFNEPGSSLTSRTRIKT--LT 184
Query: 144 VAPIK--------DSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRIL 188
I D K P +T+ I ++ +++ + G KA +K +
Sbjct: 185 QDTIIANSRFFEGDVNKVPKNALTVGIGTIMDSQEVLIIVNGHNKARALKHAI 237
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 7e-04
Identities = 44/278 (15%), Positives = 81/278 (29%), Gaps = 71/278 (25%)
Query: 12 CG--SLIKALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTE 69
G + + + + DF KIF+ + + + PE+ + +KLL P T
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDF---KIFWLN--LKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 70 ESFVPVNTSLPVEEAAKDYEQTIRSHFPYE--------FKDPLPPGQAHWPRFD----SL 117
S N L + + + + PYE ++ W F+ L
Sbjct: 216 RSDHSSNIKLRIHS-IQAELRRLLKSKPYENCLLVLLNVQNA-----KAWNAFNLSCKIL 269
Query: 118 L----------LGLGPDGHTCSLFPDHPLLKERSL-----WV-APIKDSPKPPPERVTIT 161
L L H L + ++ +D P E +T
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PREVLTTN 326
Query: 162 FPVIHKARNIILYLIGAGKADIIKRI----LVDCERLPGF---YINATEPNCNVEWYLDA 214
P L +I D + V+C++L +N EP + +
Sbjct: 327 -P-------RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 215 EAGKLIPRNEPILKEWGSEIEAFTSCTPLWNNDNERDI 252
+ P + I +W + + D+
Sbjct: 379 S---VFPPSAH--------IPTILLSL-IWFDVIKSDV 404
Score = 37.5 bits (86), Expect = 0.004
Identities = 49/317 (15%), Positives = 82/317 (25%), Gaps = 120/317 (37%)
Query: 11 SCGSLI----KALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPG 66
SC L+ K + + + T S D + E K LL K+
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHIS------LDHHSMTLTPDEV------KSLLLKYLD 312
Query: 67 LTEESFVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRF------------ 114
+ LP E + + S +D G A W +
Sbjct: 313 CRPQD-------LP-REVLTTNPRRL-SIIAESIRD----GLATWDNWKHVNCDKLTTII 359
Query: 115 DSLLLGLGPDGH-----TCSLFPDHPLLKER---SLWVAPIKDSP--------------- 151
+S L L P + S+FP + +W IK
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 152 KPPPERVTI------------TFPVIHK----ARNIIL--------------YL---IG- 177
+P ++I +H+ NI Y IG
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 178 -------AGKADIIKRILVDCE------RLPGFYINATEPNCN----VEWYLDAEAGKLI 220
+ + + + +D R NA+ N +++Y I
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY-----KPYI 534
Query: 221 PRNEPILKEWGSEIEAF 237
N+P + + I F
Sbjct: 535 CDNDPKYERLVNAILDF 551
Score = 37.1 bits (85), Expect = 0.004
Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 62/212 (29%)
Query: 21 EDILPKVRTDFSKWKIFFCDE-----RMV----PYDH----PESTFGVYK--KLLLGKFP 65
+DIL F F C + + + DH ++ G + LL K
Sbjct: 19 KDILSVFEDAFV--DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK-Q 75
Query: 66 GLTEESFVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDG 125
+ FV E +Y+ + S E + P + + L D
Sbjct: 76 EEMVQKFV-------EEVLRINYK-FLMSPIKTEQRQPSMMTR----MYIEQRDRLYNDN 123
Query: 126 HTCSLFPDHPLLKERSLWV---APIKDSPKPPPERVTITFPVIHKARNIILY-LIGAGK- 180
+F + + + + A ++ P A+N+++ ++G+GK
Sbjct: 124 Q---VFAKYNVSRLQPYLKLRQALLELRP----------------AKNVLIDGVLGSGKT 164
Query: 181 ---ADIIKRILVDCERLPG--FYINATEPNCN 207
D+ V C ++ F++N NCN
Sbjct: 165 WVALDVCLSYKVQC-KMDFKIFWLNLK--NCN 193
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.026
Identities = 40/249 (16%), Positives = 69/249 (27%), Gaps = 108/249 (43%)
Query: 13 GSLIKALAEDILPKVRT------------DFSKWKIFFCDERMVPYDHPESTFGVYKKLL 60
G LIK AE + +RT + +W ++P +T
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW-----------LENPSNT-------- 225
Query: 61 LGKFPGLTEESF---VPVNTSLP---VEEAAKDYEQTIRSH--FPYEFKDPLPPGQAH-- 110
P + + +P+ S P V + A Y T + P E + L H
Sbjct: 226 ----PD---KDYLLSIPI--SCPLIGVIQLAH-YVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 111 -------------WPRFD-------SLLLGLGPDGHTCSLFPDHPLLKERSLWVAPIKDS 150
W F ++L +G + +P+ SL + ++DS
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA--YPN------TSLPPSILEDS 327
Query: 151 PK-----PPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVDCERLPG---FYI--- 199
+ P P +L + + + + LP I
Sbjct: 328 LENNEGVPSP----------------MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 200 NATEPNCNV 208
N V
Sbjct: 372 NG--AKNLV 378
Score = 30.4 bits (68), Expect = 0.75
Identities = 46/232 (19%), Positives = 70/232 (30%), Gaps = 95/232 (40%)
Query: 48 HPESTFGVYKKLLLGKFPGLTEESFVPVNTSLPVEEAAKDYEQTIR-SHFPYEFKDPLP- 105
P+S +G+ L K P ++S +P + + R F F LP
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIP-------------FSE--RKLKFSNRF---LPV 423
Query: 106 --PGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLKERSLWVAPIKDSPKPPPERVTITFP 163
P F H+ L P L+ + L + + K I P
Sbjct: 424 ASP-------F-----------HSHLLVPASDLINKD-LVKNNVSFNAK------DIQIP 458
Query: 164 VIH--KARNIILYLIGAGKADIIKRILVDCERLPGFYINATEPNCNVEW----------Y 211
V ++ + I +VDC I P V+W
Sbjct: 459 VYDTFDGSDL------RVLSGSISERIVDC-------I-IRLP---VKWETTTQFKATHI 501
Query: 212 LD------AEAGKLIPRNEPILKEWGS---EIEAFTSCTPLWNNDNERDIAY 254
LD + G L RN K+ G+ I A T L N ++ D +
Sbjct: 502 LDFGPGGASGLGVLTHRN----KD-GTGVRVIVAGT----LDINPDD-DYGF 543
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier
desaturase; electron transfer, oxidoreductase, lipid
synthesis, fatty AC biosynthesis; HET: GVM; 1.95A
{Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A
2xz0_A* 2xz1_A* 1afr_A 2j2f_A
Length = 338
Score = 32.1 bits (72), Expect = 0.16
Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 7/101 (6%)
Query: 14 SLIKALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEESFV 73
SL ++L +++ W+ + +P + F + L + + ++ FV
Sbjct: 17 SLDDWARNNVLIHLKSVEKSWQP----QDYLPDPVSD-GFEEQVRELRERAKEIPDDYFV 71
Query: 74 PVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRF 114
+ + EEA Y + KD + W +
Sbjct: 72 VLVGDMITEEALPTYMSMLNRCDG--IKDETGAEPSAWAMW 110
>2y0f_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase,
isoprenoid biosynthesis, non-mevalonate PATH; 2.50A
{Thermus thermophilus}
Length = 406
Score = 29.2 bits (66), Expect = 1.3
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 4 PGVLSCQSCG----SLIKALAEDILPKVRTDFSKWK 35
P V SC CG + + LAE++ +++ +W+
Sbjct: 292 PEVTSCPGCGRTTSTFFQELAEEVSRRLKERLPEWR 327
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 1.4
Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 20/61 (32%)
Query: 2 NLPGVLSCQSCGSLIKALAEDILPKVRTDFSKWKIFFC-------DERMVPYDH-PE-ST 52
NL VL+C C + E D C +++V D E T
Sbjct: 17 NLNIVLTCPECKVYPPKIVER---FSEGD------VVCALCGLVLSDKLV--DTRSEWRT 65
Query: 53 F 53
F
Sbjct: 66 F 66
>3csk_A Probable dipeptidyl-peptidase 3; Zn-hydrolase, aminodipeptidase,
hexxgh-motif, aminopeptidase hydrolase, metal-binding,
metalloprotease; 1.95A {Saccharomyces cerevisiae}
Length = 711
Score = 28.3 bits (62), Expect = 2.9
Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 13/114 (11%)
Query: 54 GVYKKLLLGKF-PGLTEESFVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWP 112
G +K KF P + F + + ++ + L
Sbjct: 99 GNFKSFGDTKFIPRCEVKFFKQLLELAKINPSSSPLTLSPVDVNHEFTSHHLFSTI--NE 156
Query: 113 RFDS---------LLLGLGPDGHTCSLFPDHPL-LKERSLWVAPIKDSPKPPPE 156
D LLG G+T + + P+ ++ +L + PE
Sbjct: 157 LIDIGIYHVEEKAALLGFPSQGYTSAYYLGLPVTPEDMALLKEQLFAELAILPE 210
>1muk_A Minor core protein lambda 3; single subunit polymerase fold, fingers,
PALM, thumb, right hand configuration, viral protein;
2.50A {Reovirus SP} SCOP: e.8.1.4 PDB: 1mwh_A* 1n1h_A*
1n35_A* 1n38_A* 1uon_A* 2cse_1
Length = 1267
Score = 27.8 bits (61), Expect = 4.3
Identities = 22/145 (15%), Positives = 47/145 (32%), Gaps = 20/145 (13%)
Query: 34 WKIFFCDERMVPYDHPESTFGV--YKKLL--LGKFPGLTEESFVPVNTSLPVEEAAKDYE 89
+ D + FG Y++ L + G + + E
Sbjct: 909 LMTRWMVANGYVTDRCSTVFGNADYRRCFNELKLYQGYYMAQLPRNPKKSGRAASREVRE 968
Query: 90 QTIRSHFPYEFKDP-----LPPGQAHWPRFDSLLLGLGPDGHTCSLFPDHPLLKERSLWV 144
Q ++ Y ++P + G++ W ++ + ++ P SLF D P W
Sbjct: 969 QFTQALSDYLMQNPELKSRVLRGRSEWEKYGAGIIHNPP-----SLF-DVP-----HKWY 1017
Query: 145 APIKDSPKPPPERVTITFPVIHKAR 169
+++ E + + +AR
Sbjct: 1018 QGAQEAAIATREELAEMDETLMRAR 1042
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.141 0.455
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,251,037
Number of extensions: 255656
Number of successful extensions: 572
Number of sequences better than 10.0: 1
Number of HSP's gapped: 522
Number of HSP's successfully gapped: 34
Length of query: 254
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 163
Effective length of database: 4,160,982
Effective search space: 678240066
Effective search space used: 678240066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)