RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1382
(254 letters)
>d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga
maritima [TaxId: 2336]}
Length = 218
Score = 102 bits (254), Expect = 3e-27
Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 23/203 (11%)
Query: 11 SCGSLIKALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEE 70
+ G + E L + + +++ F DER VP D +S F ++L +
Sbjct: 38 AGGRTPLPVYE-KLAEQKFPWNRIHFFLSDERYVPLDSDQSNFRNINEVL-FSRAKIPSG 95
Query: 71 SFVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSL 130
+ V+TSLP+E+A + YE+ ++ +FD +LG+GPDGH S+
Sbjct: 96 NVHYVDTSLPIEKACEKYER---------------EIRSATDQFDLAILGMGPDGHVASI 140
Query: 131 FPDHPLLKERSLWVAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKADIIKRILVD 190
F K+ V S P RVT+TF ++ + ++ + G K + + IL D
Sbjct: 141 FDLETGNKDN--LVTFTDPSGDPKVPRVTLTFRALNTSLYVLFLIRGKEKINRLTEILKD 198
Query: 191 CERLPGFYINATEPNCNVEWYLD 213
LP +++ E W++
Sbjct: 199 -TPLPAYFVRGKE---KTVWFVG 217
>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Human (Homo sapiens) [TaxId: 9606]}
Length = 281
Score = 94.0 bits (233), Expect = 2e-23
Identities = 36/216 (16%), Positives = 65/216 (30%), Gaps = 34/216 (15%)
Query: 15 LIKALAEDILPKVRTDFSKWKIFFCDERM-VPYDHPESTFGVYKKLLLGKFPGLTEESFV 73
K L E F K F DE + +P DHPES E + +
Sbjct: 48 CYKKLIE-YYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHI 106
Query: 74 PVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSLFPD 133
++ ++ +E+ I+ + + G+GPDGH P
Sbjct: 107 LDGNAVDLQAECDAFEEKIK----------------AAGGIELFVGGIGPDGHIAFNEPG 150
Query: 134 HPLLKERSLW-----------VAPIKDSPKPPPERVTITFPVIHKARNIILYLIGAGKAD 182
L+ + + K P +T+ + AR +++ + GA KA
Sbjct: 151 SSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAF 210
Query: 183 IIKRIL--VDCERLPGFYINATEPNCNVEWYLDAEA 216
+ + + + D +A
Sbjct: 211 ALYKAIEEGVNHMWTVSAFQQHP---RTVFVCDEDA 243
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Escherichia coli [TaxId: 562]}
Length = 266
Score = 92.5 bits (229), Expect = 5e-23
Identities = 34/243 (13%), Positives = 71/243 (29%), Gaps = 39/243 (16%)
Query: 11 SCGSLIKALAE---DILPKVRTDFSKWKIFFCDERMV-PYDHPESTFGVYKKLLLGKFPG 66
G + ++ + F F DE + P +HPES + +
Sbjct: 40 PTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDI 99
Query: 67 LTEESFVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGH 126
E + + ++ + YE+ IRS+ + G+G DGH
Sbjct: 100 PAENINLLNGNAPDIDAECRQYEEKIRSYGKIHL----------------FMGGVGNDGH 143
Query: 127 TCSLFPDHPLLKERSLWV-----------APIKDSPKPPPERVTITFPVIHKARNIILYL 175
P L + D + P +T+ + A +++ +
Sbjct: 144 IAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILV 203
Query: 176 IGAGKADIIKRIL--VDCERLPGFYINATEPNCNVEWYLDAEAGKLIPRNEPILKEWGSE 233
+G+ KA ++ + + D + + + +E
Sbjct: 204 LGSQKALALQAAVEGCVNHMWTISCLQLHP---KAIMVCDEPSTMELKVKT---LRYFNE 257
Query: 234 IEA 236
+EA
Sbjct: 258 LEA 260
>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965
{Enterococcus faecalis [TaxId: 1351]}
Length = 247
Score = 55.4 bits (133), Expect = 8e-10
Identities = 19/188 (10%), Positives = 50/188 (26%), Gaps = 26/188 (13%)
Query: 11 SCGSLIKALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEE 70
G+ + +AE+ + + T+ R + ++ K G
Sbjct: 55 MGGTTMAMVAEN-MGSLETEKRHNLFV--PARGGIGEAVSVQANSISAVMANKTGGNYRA 111
Query: 71 SFVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSL 130
+VP S + E +I+ + ++ +G H +
Sbjct: 112 LYVPEQLSRETYNSLL-QEPSIQEVL------------TLISHANCVVHSIGRALHMAAR 158
Query: 131 FPDHP--LLKERSLWVAP--------IKDSPKPPPERVTITFPVIHKARNIILYLIGAGK 180
++ + + R+ + + + ++ G K
Sbjct: 159 RKMSDDEMVMLKQKNAVAESFGYFFDEEGKVVYKIPRIGLQLKNLQEIPYVVAIAGGKTK 218
Query: 181 ADIIKRIL 188
A I+ +
Sbjct: 219 AKAIRAYM 226
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR
{Bacillus subtilis [TaxId: 1423]}
Length = 250
Score = 45.4 bits (107), Expect = 2e-06
Identities = 25/189 (13%), Positives = 49/189 (25%), Gaps = 29/189 (15%)
Query: 11 SCGSLIKALAEDILPKVR-TDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTE 69
+ G+ I+A+AE + P + + V + K G
Sbjct: 60 TGGTTIEAVAEMMTPDSKNRELLFVPARGGLGEDVKNQANTIC-----AHMAEKASGTYR 114
Query: 70 ESFVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCS 129
FVP S + + E +++ L+ G+G
Sbjct: 115 LLFVPGQLSQGAYSSIIE-EPSVKEVL------------NTIKSASMLVHGIGEAKTMAQ 161
Query: 130 LFPDHPLLKERSLWVAPIKD----------SPKPPPERVTITFPVIHKARNIILYLIGAG 179
++ + + V + I +II G+
Sbjct: 162 RRNTPLEDLKKIDDNDAVTEAFGYYFNADGEVVHKVHSVGMQLDDIDAIPDIIAVAGGSS 221
Query: 180 KADIIKRIL 188
KA+ I+
Sbjct: 222 KAEAIEAYF 230
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella
flexneri [TaxId: 623]}
Length = 255
Score = 42.3 bits (99), Expect = 2e-05
Identities = 25/198 (12%), Positives = 52/198 (26%), Gaps = 38/198 (19%)
Query: 11 SCGSLIKALAEDILPKVRT---DFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGL 67
S G + AL E++ ++ I ++ H + L G+
Sbjct: 56 SWGRAVSALVENLPQAGQSRQLICVPI-IGGPSGKLESRYHVNTLTYSAAAKLKGESHLA 114
Query: 68 TEESFVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHT 127
+ + ++ ++ A+W D L+G+G
Sbjct: 115 DFPALLDNPLIRNGIMQSQHFKTIS----------------AYWDNLDIALVGIGSPAIR 158
Query: 128 CSLFPDHPLLKE-----RSLWVAP------------IKDSPKPPPERVTITFPVIHKARN 170
E + VA + ++ ++I + +AR
Sbjct: 159 DGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAMVETNMSEK-TLSIEMNKLKQARY 217
Query: 171 IILYLIGAGKADIIKRIL 188
I + K I L
Sbjct: 218 SIGIAMSEEKYSGIIGAL 235
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 262
Score = 34.6 bits (79), Expect = 0.008
Identities = 25/194 (12%), Positives = 49/194 (25%), Gaps = 32/194 (16%)
Query: 11 SCGSLIKALAEDILPKVRTDFSKWKIFFCDERMVPYDHPESTFGVYKKLLLGKFPGLTEE 70
S G + L + I K + F+ + H + + KF G
Sbjct: 61 SWGKSLSNLVDLIHSKSVRN----VHFYPLAGGPSHIHAKYHVNTLIYEMSRKFHGECTF 116
Query: 71 SFVPVNTSLPVEEAAKDYEQTIRSHFPYEFKDPLPPGQAHWPRFDSLLLGLGPDGHTCSL 130
+ + + + W D ++G+G +
Sbjct: 117 MNATIVQENKLLADGILQSRYFENLK------------NSWKDLDIAVVGIGDFSNKGKH 164
Query: 131 FPDHPLLKE------RSLWVAPI---------KDSPKPPPERV-TITFPVIHKARNIILY 174
L ++ + V I K+ + ER I+ + +
Sbjct: 165 QWLDMLTEDDFKELTKVKTVGEICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAV 224
Query: 175 LIGAGKADIIKRIL 188
G K I +L
Sbjct: 225 AYGDTKVSSILSVL 238
>g1wht.1 c.69.1.5 (A:,B:) Serine carboxypeptidase II {Wheat
(Triticum vulgare) [TaxId: 4565]}
Length = 409
Score = 28.2 bits (62), Expect = 1.1
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 43 MVPYDHPESTFGVYKKLLLGK-FPG 66
VP P +++ L GK PG
Sbjct: 384 EVPLHRPRQALVLFQYFLQGKPMPG 408
>d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 421
Score = 28.2 bits (62), Expect = 1.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 43 MVPYDHPESTFGVYKKLLLGKF 64
MVP+D PE+ + + + G F
Sbjct: 398 MVPFDVPENALSMVNEWIHGGF 419
>g1gxs.1 c.69.1.5 (A:,B:) Hydroxynitrile lyase {Sorghum (Sorghum
bicolor) [TaxId: 4558]}
Length = 425
Score = 26.7 bits (58), Expect = 3.0
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 43 MVPYDHPESTFGVYKKLLLGK 63
+VP P F ++K+ L G+
Sbjct: 400 LVPVHRPAQAFLLFKQFLKGE 420
>d2paga1 d.369.1.1 (A:1-135) Hypothetical protein PSPTO5518
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 135
Score = 25.2 bits (55), Expect = 4.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 73 VPVNTSLPVEEAAKDYEQTIRSHFPYEFKD 102
VPV LP E+ + E+ + + P+ FK+
Sbjct: 15 VPVPLELPDEDQLVEIEEQLFINIPFVFKE 44
>d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 452
Score = 25.6 bits (55), Expect = 6.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 43 MVPYDHPESTFGVYKKLLLGK 63
MVP D P + F ++ + L +
Sbjct: 430 MVPTDKPLAAFTMFSRFLNKQ 450
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 239
Score = 25.2 bits (54), Expect = 8.0
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 195 PGFYINATEPNCNVEWYLDAEAGKLIPRN 223
P YI + E ++W D E +I +N
Sbjct: 19 PDTYIGSVETQEQLQWIYDEETDCMIEKN 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.141 0.455
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,076,557
Number of extensions: 53331
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 17
Length of query: 254
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,268,006
Effective search space: 216829026
Effective search space used: 216829026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)