BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13820
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 113/178 (63%), Gaps = 3/178 (1%)
Query: 173 EVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY-NVYKVETIGDAYMVVGG 231
E T+ FSDIVGFT I++ S+P EV LL++LY FDA I Y +YKVETIGDAYMVV
Sbjct: 9 EATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCN 68
Query: 232 LPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYC 291
+ V DHAD + AL + H ++ P+R+R+G+H+GP AGVVG MPR+
Sbjct: 69 VTVPCDDHADVLLEFALRM--HEEASRVASSLGEPVRIRVGMHSGPVVAGVVGRKMPRFX 126
Query: 292 LFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWL 349
LFGDTVNTASR+ES G +IH+S L +++ RG +KGKG M TY L
Sbjct: 127 LFGDTVNTASRMESHGEAGQIHISEACYCCLRSKERFEIRERGNITVKGKGTMRTYLL 184
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 113/178 (63%), Gaps = 3/178 (1%)
Query: 173 EVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY-NVYKVETIGDAYMVVGG 231
E T+ FSDIVGFT I++ S+P EV LL++LY FDA I Y +YKVETIGDAYMVV
Sbjct: 9 EATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCN 68
Query: 232 LPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYC 291
+ V DHAD + AL + H ++ P+R+R+G+H+GP AGVVG MPR+
Sbjct: 69 VTVPCDDHADVLLEFALRM--HEEASRVASSLGEPVRIRVGMHSGPVVAGVVGRKMPRFX 126
Query: 292 LFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWL 349
LFGDTVNTASR+ES G +IH+S L +++ RG +KGKG M TY L
Sbjct: 127 LFGDTVNTASRMESHGEAGQIHISEACYXCLRSKERFEIRERGNITVKGKGTMRTYLL 184
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 225
Score = 148 bits (373), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 102/176 (57%), Gaps = 2/176 (1%)
Query: 163 GMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETI 222
G V + F VT+ FSDIVGFT I + +P +V+ +LN LYT FD +VYKVETI
Sbjct: 4 GQVVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETI 63
Query: 223 GDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGV 282
GDAY V GGL HA QIA MAL ++ S H P+++RIGLH+G AGV
Sbjct: 64 GDAYCVAGGLHKESDTHAVQIALMALKMMELSDEVMSPH--GEPIKMRIGLHSGSVFAGV 121
Query: 283 VGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETEL 338
VG+ MPRYCLFG+ V A++ ES P +I++S T L + R EL
Sbjct: 122 VGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPRSREEL 177
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 113/183 (61%), Gaps = 4/183 (2%)
Query: 171 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG 230
+ E ++ F+DIVGFT ++ + P ++V L+ LY+ FD ++ + + K+E GD+YMVV
Sbjct: 8 YDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMVVS 67
Query: 231 GLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRY 290
G+P PDH +A ALD+ + + + K P+ LR+GL TGP AGVVG RY
Sbjct: 68 GVPRPRPDHTQALADFALDMTNVAAQLKDPR--GNPVPLRVGLATGPVVAGVVGSRRFRY 125
Query: 291 CLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWLL 350
C++GD VN ASR+EST + +I + + +L D+ L RG +KGKG M T++L+
Sbjct: 126 CVWGDAVNVASRMESTDSVGQIQVPDEVYERLKD--DFVLRERGHINVKGKGVMRTWYLI 183
Query: 351 GKK 353
G+K
Sbjct: 184 GRK 186
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 112/200 (56%), Gaps = 14/200 (7%)
Query: 165 PVDPEDFREVTIYFSDIVGFTTISAYSTPFE----VVDLLNDLYTCFDATINAYN---VY 217
PV + + VTI FS IVGF + E +V+LLNDLYT FD ++ VY
Sbjct: 4 PVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVY 63
Query: 218 KVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGP 277
KVET+GD YM V GLP HA I +ALD++ +G+ ++ +++ IG+HTG
Sbjct: 64 KVETVGDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVDG---ESVQITIGIHTGE 120
Query: 278 CCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKL----DQVGDYQLEYR 333
GV+G MPRYCLFG+TVN SR E+TG +I++S T L + + LE+R
Sbjct: 121 VVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHR 180
Query: 334 GETELKGKGKMPTYWLLGKK 353
G +KGK + W L +K
Sbjct: 181 GPVSMKGKKEPMQVWFLSRK 200
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 110/200 (55%), Gaps = 14/200 (7%)
Query: 165 PVDPEDFREVTIYFSDIVGFTTISAYSTPFE----VVDLLNDLYTCFDATINAYN---VY 217
PV + + VTI FS IVGF + E +V+LLNDLYT FD ++ VY
Sbjct: 5 PVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVY 64
Query: 218 KVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGP 277
KVET+ D YM V GLP HA I +ALD++ +G+ ++ +++ IG+HTG
Sbjct: 65 KVETVCDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVDG---ESVQITIGIHTGE 121
Query: 278 CCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKL----DQVGDYQLEYR 333
GV+G MPRY LFG+TVN SR E+TG +I++S T L + + LE+R
Sbjct: 122 VVTGVIGQRMPRYSLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHR 181
Query: 334 GETELKGKGKMPTYWLLGKK 353
G +KGK + W L +K
Sbjct: 182 GPVSMKGKKEPMQVWFLSRK 201
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 174 VTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLP 233
V+I F+DI GFT++++ T E+V LN+L+ FD + +++ +GD Y V GLP
Sbjct: 27 VSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLP 86
Query: 234 VRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLF 293
DHA M +D++ +R + + +R+G+H+G GV+GL ++ ++
Sbjct: 87 EARADHAHCCVEMGMDMI--EAISLVREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVW 144
Query: 294 GDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLE 331
+ V A+ +E+ G RIH++ T + L+ GDY++E
Sbjct: 145 SNDVTLANHMEAGGKAGRIHITKATLSYLN--GDYEVE 180
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 174 VTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLP 233
V+I F+DI GFT++++ T E+V LN+L+ FD + +++ +GD Y V GLP
Sbjct: 35 VSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLP 94
Query: 234 VRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLF 293
DHA M +D++ +R + + +R+G+H+G GV+GL ++ ++
Sbjct: 95 EARADHAHCCVEMGMDMI--EAISLVREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVW 152
Query: 294 GDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLE 331
+ V A+ +E+ G RIH++ T + L+ GDY++E
Sbjct: 153 SNDVTLANHMEAGGKAGRIHITKATLSYLN--GDYEVE 188
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 174 VTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLP 233
V+I F+DI GFT++++ T E+V LN+L+ FD + +++ +GD Y V GLP
Sbjct: 35 VSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLP 94
Query: 234 VRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLF 293
DHA M +D++ +R + + +R+G+H+G GV+GL ++ ++
Sbjct: 95 EARADHAHCCVEMGMDMI--EAISLVREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVW 152
Query: 294 GDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLE 331
+ V A+ +E+ G RIH++ T + L+ GDY++E
Sbjct: 153 SNDVTLANHMEAGGKAGRIHITKATLSYLN--GDYEVE 188
>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
pdb|1AB8|B Chain B, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
Length = 220
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 89/169 (52%), Gaps = 15/169 (8%)
Query: 194 FEVVDLLNDLYTCFDATINA---YNVYKVETIGDAYMVVGGLPVRIP--DHADQ------ 242
E + LLN++ FD ++ V K++TIG YM GL IP +HA +
Sbjct: 39 LECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSA-IPSQEHAQEPERQYM 97
Query: 243 -IATMALDLLHHSGRF-KIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTA 300
I TM G+ I + +LR+G++ GP AGV+G P+Y ++G+TVN A
Sbjct: 98 HIGTMVEFAYALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVA 157
Query: 301 SRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWL 349
SR++STG +I ++ +T L +G Y RG +KGKG + TY++
Sbjct: 158 SRMDSTGVLDKIQVTEETSLILQTLG-YTCTCRGIINVKGKGDLKTYFV 205
>pdb|1AZS|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1CJK|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CS4|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1TL7|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
pdb|1U0H|B Chain B, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|B Chain B, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|B Chain B, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 212
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 89/169 (52%), Gaps = 15/169 (8%)
Query: 194 FEVVDLLNDLYTCFDATINA---YNVYKVETIGDAYMVVGGLPVRIP--DHADQ------ 242
E + LLN++ FD ++ V K++TIG YM GL IP +HA +
Sbjct: 40 LECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSA-IPSQEHAQEPERQYM 98
Query: 243 -IATMALDLLHHSGRF-KIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTA 300
I TM G+ I + +LR+G++ GP AGV+G P+Y ++G+TVN A
Sbjct: 99 HIGTMVEFAYALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVA 158
Query: 301 SRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWL 349
SR++STG +I ++ +T L +G Y RG +KGKG + TY++
Sbjct: 159 SRMDSTGVLDKIQVTEETSLILQTLG-YTCTCRGIINVKGKGDLKTYFV 206
>pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 208
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 89/169 (52%), Gaps = 15/169 (8%)
Query: 194 FEVVDLLNDLYTCFDATINA---YNVYKVETIGDAYMVVGGLPVRIP--DHADQ------ 242
E + LLN++ FD ++ V K++TIG YM GL IP +HA +
Sbjct: 36 LECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSA-IPSQEHAQEPERQYM 94
Query: 243 -IATMALDLLHHSGRF-KIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTA 300
I TM G+ I + +LR+G++ GP AGV+G P+Y ++G+TVN A
Sbjct: 95 HIGTMVEFAYALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVA 154
Query: 301 SRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWL 349
SR++STG +I ++ +T L +G Y RG +KGKG + TY++
Sbjct: 155 SRMDSTGVLDKIQVTEETSLILQTLG-YTCTCRGIINVKGKGDLKTYFV 202
>pdb|3R5G|A Chain A, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
pdb|3R5G|B Chain B, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
Length = 198
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 81/175 (46%), Gaps = 8/175 (4%)
Query: 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGG 231
+++T++FSDI GFT +S + DLLN+ Y + +GD MV G
Sbjct: 8 KKLTVFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKFVGDCVMVFFG 67
Query: 232 LPVRIPDHADQIA--TMALDLLHHSG--RFKIRHLPYT-PLRLRIGLHTGPCCAGVVGL- 285
P D +A +M + + H R + R T PL +R+G++TG C G G
Sbjct: 68 DPSTQGAKKDAVAAVSMGIAMRKHMKVLRQQWRAQGITKPLEIRMGINTGYCTVGNFGAD 127
Query: 286 TMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKG 340
T Y + G VN ASRLES I +S +T + + V +G+ +KG
Sbjct: 128 TRMDYTIIGREVNLASRLESASEAGEILISHETYSLIKDV--IMCRDKGQIAVKG 180
>pdb|1WC0|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp
pdb|1WC0|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp
pdb|1WC3|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Strontium
pdb|1WC3|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Strontium
pdb|1WC4|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Europium
pdb|1WC4|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Europium
pdb|1WC5|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|D Chain D, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|2BW7|A Chain A, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|B Chain B, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|C Chain C, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|D Chain D, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
Length = 219
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 82/185 (44%), Gaps = 24/185 (12%)
Query: 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATI--NAYNVYKVETIGDAYMVV 229
R +TI FSDIVGFT +S V +LLN+ + N V K +GDA M +
Sbjct: 26 RLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKF--VGDAIMAL 83
Query: 230 GGLP--------VRIPDHADQIATMALDLLHHS----GRFKIRHLPYTPLRLRIGLHTGP 277
G P VR + +AL+ L+ G +P P+R R G+H G
Sbjct: 84 YGAPEEMSPSEQVRRAIATARQMLVALEKLNQGWQERGLVGRNEVP--PVRFRCGIHQGM 141
Query: 278 CCAGVVGLTMPR--YCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGE 335
G+ G + R + G +VN A+RL+ AP I +SA V D ++ R
Sbjct: 142 AVVGLFG-SQERSDFTAIGPSVNIAARLQEATAPNSIMVSAMVA---QYVPDEEIIKREF 197
Query: 336 TELKG 340
ELKG
Sbjct: 198 LELKG 202
>pdb|1WC1|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas
pdb|1WC1|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas
pdb|1WC1|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas
pdb|1WC6|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas In Presence Of Bicarbonate
pdb|1WC6|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas In Presence Of Bicarbonate
pdb|1WC6|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas In Presence Of Bicarbonate
Length = 226
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 80/183 (43%), Gaps = 20/183 (10%)
Query: 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGG 231
R +TI FSDIVGFT +S V +LLN+ + + +GDA M + G
Sbjct: 33 RLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYG 92
Query: 232 LP--------VRIPDHADQIATMALDLLHHS----GRFKIRHLPYTPLRLRIGLHTGPCC 279
P VR + +AL+ L+ G +P P+R R G+H G
Sbjct: 93 APEEMSPSEQVRRAIATARQMLVALEKLNQGWQERGLVGRNEVP--PVRFRCGIHQGMAV 150
Query: 280 AGVVGLTMPR--YCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETE 337
G+ G + R + G +VN A+RL+ AP I +SA V D ++ R E
Sbjct: 151 VGLFG-SQERSDFTAIGPSVNIAARLQEATAPNSIMVSAMVA---QYVPDEEIIKREFLE 206
Query: 338 LKG 340
LKG
Sbjct: 207 LKG 209
>pdb|2W01|A Chain A, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|B Chain B, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|C Chain C, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|D Chain D, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|E Chain E, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|F Chain F, Crystal Structure Of The Guanylyl Cyclase Cya2
Length = 208
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 6/161 (3%)
Query: 170 DFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVV 229
D R +TI SD+ GFT+ S P EVV +LN + I + E +GD +V+
Sbjct: 11 DRRPITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEFMGDGILVL 70
Query: 230 GGLPVRIPDHADQIATMALD--LLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGL-T 286
G P D A + ++ L ++ L PL + IG++TG G +G
Sbjct: 71 FGAPTSQQDDALRAVACGVEMQLALREVNQQVTGLGLQPLEMGIGINTGEVVVGNIGSEK 130
Query: 287 MPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGD 327
+Y + G VN R+ES +I +S+ T L+ GD
Sbjct: 131 RTKYGVVGAQVNLTYRIESYTTGGQIFISSTT---LEAAGD 168
>pdb|1Y10|A Chain A, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|B Chain B, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|C Chain C, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|D Chain D, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y11|A Chain A, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme, Active
State
Length = 407
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 108/268 (40%), Gaps = 59/268 (22%)
Query: 79 LEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLD 138
LE ++R +LDI K ++ L+++++P + M M ++ E +
Sbjct: 150 LEAIMRPGATELDI-AKGSQALVSQIVPLLGPMIQDMLFMQLRHMMETEAV--------- 199
Query: 139 IEKKKTEQLLNRMLPSSVAEKLKLGMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVD 198
E+ + LP + R+VT+ F+D+VGFT + + E+
Sbjct: 200 ---NAGERAAGKPLPGA----------------RQVTVAFADLVGFTQLGEVVSAEELGH 240
Query: 199 LLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATM--ALDLLHHSGR 256
L L + A V+ ++TIGDA M+V PD A + T+ ++++
Sbjct: 241 LAGRL-AGLARDLTAPPVWFIKTIGDAVMLV------CPDPAPLLDTVLKLVEVVDTDNN 293
Query: 257 FKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYC-LFGDTVNTASRLESTGAPWRIHLS 315
F RLR G+ + G+ + R FG VN ASR+ P + ++
Sbjct: 294 FP---------RLRAGVAS--------GMAVSRAGDWFGSPVNVASRVTGVARPGAVLVA 336
Query: 316 ADTKAKLD---QVGDYQLEYRGETELKG 340
+ L + +Q + G L+G
Sbjct: 337 DSVREALGDAPEADGFQWSFAGPRRLRG 364
>pdb|1FX2|A Chain A, Structural Analysis Of Adenylate Cyclases From Trypanosoma
Brucei In Their Monomeric State
Length = 235
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 87/207 (42%), Gaps = 52/207 (25%)
Query: 165 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 224
P DP VT+ F+DI T + A + P + D + + + I Y Y+V+T+GD
Sbjct: 9 PTDP-----VTLIFTDIESSTALWA-AHPDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGD 62
Query: 225 AYMVVGGLPVRIPDHADQIAT-MALDLLHHSG----------RFKIR----HLPYTP--- 266
++M+ P A Q+A + L LHH F+ + YTP
Sbjct: 63 SFMIASKSPFA----AVQLAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTPPTA 118
Query: 267 -------------LRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRI- 312
LR+R+G+HTG C +T Y +G T N A+R ES ++
Sbjct: 119 HMDPEVYSRLWNGLRVRVGIHTGLCDIRHDEVTKG-YDYYGRTPNMAARTESVANGGQVL 177
Query: 313 -------HLSADTKAKLD--QVGDYQL 330
LSA+ + ++D +GD L
Sbjct: 178 MTHAAYMSLSAEDRKQIDVTALGDVAL 204
>pdb|1FX4|A Chain A, Structure Analysis Of Adenylate Cyclases From Trypanosoma
Brucei In Their Monomeric State
Length = 231
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 29/161 (18%)
Query: 174 VTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLP 233
VT+ F+DI T + A + P + D + + + I Y Y+V+T+GD++M+ P
Sbjct: 13 VTLIFTDIESSTALWA-AHPDLMPDAVATHHRLIRSLITRYECYEVKTVGDSFMIASKSP 71
Query: 234 VRIPDHAD--QIATMALDLLHHSGRFKIRHL---------PYTP---------------- 266
A Q+ + LD ++ R YTP
Sbjct: 72 FAAVQLAQELQLCFLRLDWETNAVDESYREFEEQRAEGECEYTPPTASLDPEVYSRLWNG 131
Query: 267 LRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTG 307
LR+R+G+HTG C +T Y +G T N A+R ES
Sbjct: 132 LRVRVGIHTGLCDIRYDEVTKG-YDYYGRTSNMAARTESVA 171
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 452 MRACWQWNPSDRPSFAEIHQAFETMFQ 478
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 449 MRACWQWNPSDRPSFAEIHQAFETMFQ 475
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 491 MRACWQWNPSDRPSFAEIHQAFETMFQ 517
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 245 MRACWQWNPSDRPSFAEIHQAFETMFQ 271
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 245 MRACWQWNPSDRPSFAEIHQAFETMFQ 271
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 245 MRACWQWNPSDRPSFAEIHQAFETMFQ 271
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 245 MRACWQWNPSDRPSFAEIHQAFETMFQ 271
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 243 MRACWQWNPSDRPSFAEIHQAFETMFQ 269
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 243 MRACWQWNPSDRPSFAEIHQAFETMFQ 269
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 247 MRACWQWNPSDRPSFAEIHQAFETMFQ 273
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 250 MRACWQWNPSDRPSFAEIHQAFETMFQ 276
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 243 MRACWQWNPSDRPSFAEIHQAFETMFQ 269
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 258 MRACWQWNPSDRPSFAEIHQAFETMFQ 284
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 250 MRACWQWNPSDRPSFAEIHQAFETMFQ 276
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 245 MRACWQWNPSDRPSFAEIHQAFETMFQ 271
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 247 MRACWQWNPSDRPSFAEIHQAFETMFQ 273
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 246 MRACWQWNPSDRPSFAEIHQAFETMFQ 272
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 247 MRACWQWNPSDRPSFAEIHQAFETMFQ 273
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 246 MRACWQWNPSDRPSFAEIHQAFETMFQ 272
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 250 MRACWQWNPSDRPSFAEIHQAFETMFQ 276
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 250 MRACWQWNPSDRPSFAEIHQAFETMFQ 276
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 249 MRACWQWNPSDRPSFAEIHQAFETMFQ 275
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 250 MRACWQWNPSDRPSFAEIHQAFETMFQ 276
>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The
Insulin Receptor Tyrosine Kinase
Length = 306
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFK 23
MR CW P+MRP F E+ +L K
Sbjct: 265 MRMCWQFNPNMRPTFLEIVNLLK 287
>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
pdb|3EKN|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
Length = 307
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFK 23
MR CW P+MRP F E+ +L K
Sbjct: 266 MRMCWQFNPNMRPTFLEIVNLLK 288
>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|B Chain B, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|2AUH|A Chain A, Crystal Structure Of The Grb14 Bps Region In Complex With
The Insulin Receptor Tyrosine Kinase
pdb|2B4S|B Chain B, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|D Chain D, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|3BU3|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide
pdb|3BU5|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide And Atp
pdb|3BU6|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Phosphopeptide
Length = 306
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFK 23
MR CW P+MRP F E+ +L K
Sbjct: 265 MRMCWQFNPNMRPTFLEIVNLLK 287
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
MR CW P RP F E++ F+T+
Sbjct: 245 MRACWQWNPSDRPSFAEIHQAFETM 269
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFK 23
MR CW P MRP F E+ +L K
Sbjct: 264 MRMCWQFNPKMRPTFLEIVNLLK 286
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFK 23
MR CW P MRP F E+ +L K
Sbjct: 265 MRMCWQFNPKMRPTFLEIVNLLK 287
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFK 23
MR CW P MRP F E+ +L K
Sbjct: 265 MRMCWQFNPKMRPTFLEIVNLLK 287
>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2-
Yl]amino}phenyl)acetic Acid
Length = 303
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFK 23
MR CW P MRP F E+ +L K
Sbjct: 262 MRMCWQFNPKMRPTFLEIVNLLK 284
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFK 23
MR CW P MRP F E+ +L K
Sbjct: 265 MRMCWQFNPKMRPTFLEIVNLLK 287
>pdb|1AYE|A Chain A, Human Procarboxypeptidase A2
Length = 401
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 75 YSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNNLEDLIRER 133
YS +ED+ Q+ ++K+ E L NR R NF + LE+ S +++L+ E
Sbjct: 70 YSIMIEDV------QVLLDKENEEMLFNRRRERSGNFNFGAYHTLEEISQEMDNLVAEH 122
>pdb|3F59|A Chain A, Crystal Structure Of Zu5-Ank, The Spectrin Binding Region
Of Human Erythroid Ankyrin
pdb|3F59|B Chain B, Crystal Structure Of Zu5-Ank, The Spectrin Binding Region
Of Human Erythroid Ankyrin
pdb|3F59|C Chain C, Crystal Structure Of Zu5-Ank, The Spectrin Binding Region
Of Human Erythroid Ankyrin
pdb|3F59|D Chain D, Crystal Structure Of Zu5-Ank, The Spectrin Binding Region
Of Human Erythroid Ankyrin
pdb|3KBT|C Chain C, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank)
pdb|3KBT|D Chain D, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank)
pdb|3KBU|C Chain C, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank), Emts Derivative
pdb|3KBU|D Chain D, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank), Emts Derivative
Length = 161
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 357 KELPTPPPLGDSHGLDENLILYGRTG 382
++L TPPPL + GL +I G TG
Sbjct: 50 QKLSTPPPLAEEEGLASRIIALGPTG 75
>pdb|3UD1|A Chain A, Crystal Structure Of Zu5a-Zu5b Domains Of Human
Erythrocyte Ankyrin
pdb|3UD1|B Chain B, Crystal Structure Of Zu5a-Zu5b Domains Of Human
Erythrocyte Ankyrin
pdb|3UD1|C Chain C, Crystal Structure Of Zu5a-Zu5b Domains Of Human
Erythrocyte Ankyrin
Length = 326
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 357 KELPTPPPLGDSHGLDENLILYGRTG 382
++L TPPPL + GL +I G TG
Sbjct: 50 QKLSTPPPLAEEEGLASRIIALGPTG 75
>pdb|3UD2|C Chain C, Crystal Structure Of Selenomethionine Zu5a-Zu5b Protein
Domains Of Human Erythrocyte Ankyrin
pdb|3UD2|B Chain B, Crystal Structure Of Selenomethionine Zu5a-Zu5b Protein
Domains Of Human Erythrocyte Ankyrin
pdb|3UD2|A Chain A, Crystal Structure Of Selenomethionine Zu5a-Zu5b Protein
Domains Of Human Erythrocyte Ankyrin
Length = 326
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 357 KELPTPPPLGDSHGLDENLILYGRTG 382
++L TPPPL + GL +I G TG
Sbjct: 50 QKLSTPPPLAEEEGLASRIIALGPTG 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,342,124
Number of Sequences: 62578
Number of extensions: 596230
Number of successful extensions: 1794
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1693
Number of HSP's gapped (non-prelim): 78
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)