Query psy13820
Match_columns 487
No_of_seqs 400 out of 2150
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 21:18:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1023|consensus 100.0 9.1E-56 2E-60 466.2 19.9 280 1-357 200-480 (484)
2 KOG4171|consensus 100.0 4.3E-51 9.2E-56 435.2 26.0 237 115-356 388-624 (671)
3 PF00211 Guanylate_cyc: Adenyl 100.0 7E-36 1.5E-40 279.8 19.8 181 169-351 4-184 (184)
4 smart00044 CYCc Adenylyl- / gu 100.0 4.8E-34 1E-38 270.2 22.1 184 140-324 2-187 (194)
5 KOG3619|consensus 100.0 1.6E-32 3.4E-37 303.2 20.0 311 136-475 61-401 (867)
6 COG2114 CyaA Adenylate cyclase 100.0 3.9E-31 8.5E-36 257.6 22.8 194 144-352 21-215 (227)
7 KOG3618|consensus 100.0 3.4E-33 7.4E-38 295.8 7.7 289 45-354 228-529 (1318)
8 cd07302 CHD cyclase homology d 100.0 1.8E-29 3.8E-34 232.0 22.6 175 173-348 1-175 (177)
9 KOG3619|consensus 100.0 7.8E-30 1.7E-34 281.9 19.8 217 131-350 604-841 (867)
10 KOG3618|consensus 100.0 1.9E-28 4.2E-33 259.9 13.2 219 134-356 1045-1275(1318)
11 cd07556 Nucleotidyl_cyc_III Cl 99.3 4.7E-11 1E-15 104.2 16.2 132 174-313 2-133 (133)
12 PF07701 HNOBA: Heme NO bindin 96.9 0.0014 3E-08 63.8 5.3 89 50-160 128-219 (219)
13 KOG4721|consensus 95.0 0.048 1E-06 59.4 6.4 22 1-22 344-365 (904)
14 PF05165 GGDN: GGDN family; I 94.4 0.52 1.1E-05 46.5 11.5 59 172-230 126-185 (246)
15 PF00990 GGDEF: GGDEF domain; 94.2 0.33 7.3E-06 42.7 9.3 81 172-255 31-111 (161)
16 smart00267 GGDEF diguanylate c 93.9 0.87 1.9E-05 39.7 11.1 77 173-255 34-110 (163)
17 PRK10245 adrA diguanylate cycl 93.0 1 2.2E-05 47.1 11.7 97 172-274 235-331 (366)
18 KOG0192|consensus 92.8 0.044 9.4E-07 57.4 1.1 26 1-26 279-304 (362)
19 PF10851 DUF2652: Protein of u 92.6 2.1 4.6E-05 37.2 10.9 98 207-308 5-111 (116)
20 PRK09966 putative inner membra 92.6 3.2 7E-05 43.4 14.9 79 172-255 277-355 (407)
21 cd01949 GGDEF Diguanylate-cycl 92.0 2 4.3E-05 37.1 10.6 58 172-230 30-87 (158)
22 PRK09894 diguanylate cyclase; 91.4 13 0.00028 36.9 17.0 78 172-255 157-234 (296)
23 COG2429 Archaeal GTP cyclohydr 91.1 1.8 3.8E-05 42.2 9.7 59 172-230 130-189 (250)
24 PRK11059 regulatory protein Cs 91.1 5.7 0.00012 44.6 15.5 98 173-275 259-357 (640)
25 COG2199 c-di-GMP synthetase (d 91.0 2.5 5.5E-05 38.8 10.7 79 172-256 50-128 (181)
26 PF07701 HNOBA: Heme NO bindin 90.9 0.34 7.3E-06 47.3 4.8 33 78-110 184-216 (219)
27 cd06635 STKc_TAO1 Catalytic do 90.6 0.27 5.9E-06 49.5 4.0 58 1-90 257-314 (317)
28 KOG4278|consensus 90.2 0.11 2.4E-06 57.1 0.8 29 1-29 499-527 (1157)
29 TIGR00254 GGDEF diguanylate cy 89.8 4.5 9.7E-05 35.6 10.9 58 172-230 32-89 (165)
30 KOG4257|consensus 88.2 0.18 4E-06 55.6 0.8 27 1-27 625-651 (974)
31 KOG1095|consensus 87.8 0.17 3.8E-06 59.0 0.3 25 1-25 937-961 (1025)
32 TIGR02577 cas_TM1794_Crm2 CRIS 87.3 6.8 0.00015 42.7 12.2 118 172-308 342-481 (482)
33 PRK02240 GTP cyclohydrolase II 86.8 6.8 0.00015 39.0 10.6 60 171-230 132-193 (254)
34 PF06327 DUF1053: Domain of Un 86.2 0.66 1.4E-05 39.3 2.9 44 428-471 47-101 (101)
35 COG3706 PleD Response regulato 86.0 7.1 0.00015 41.9 11.2 121 171-307 299-422 (435)
36 PRK11829 biofilm formation reg 84.7 13 0.00029 41.6 13.3 166 172-351 261-441 (660)
37 PRK13561 putative diguanylate 83.3 22 0.00049 39.8 14.3 79 172-255 257-335 (651)
38 PRK11359 cyclic-di-GMP phospho 83.2 90 0.0019 35.5 20.5 58 172-230 402-459 (799)
39 PRK10060 RNase II stability mo 82.0 46 0.001 37.7 16.2 78 172-255 265-342 (663)
40 KOG0199|consensus 80.8 0.63 1.4E-05 52.2 0.8 21 1-21 348-368 (1039)
41 cd05108 PTKc_EGFR Catalytic do 80.3 0.63 1.4E-05 46.7 0.5 29 1-29 244-272 (316)
42 PRK15426 putative diguanylate 79.9 14 0.0003 40.5 10.9 78 172-255 428-505 (570)
43 PRK14538 putative bifunctional 79.1 18 0.00039 42.2 11.8 90 181-277 212-301 (838)
44 PRK02240 GTP cyclohydrolase II 78.8 17 0.00037 36.2 9.9 55 176-230 4-61 (254)
45 PTZ00283 serine/threonine prot 77.4 1.8 4E-05 47.1 3.1 19 1-19 277-295 (496)
46 KOG0194|consensus 76.3 0.99 2.1E-05 48.9 0.6 29 1-29 396-424 (474)
47 TIGR02578 cas_TM1811_Csm1 CRIS 75.0 31 0.00067 39.2 11.9 115 171-308 520-647 (648)
48 cd05110 PTKc_HER4 Catalytic do 74.3 1.2 2.6E-05 44.4 0.5 28 1-28 244-271 (303)
49 KOG4171|consensus 73.4 4 8.6E-05 45.7 4.3 30 81-110 397-426 (671)
50 cd05100 PTKc_FGFR3 Catalytic d 72.9 1.6 3.5E-05 44.2 1.1 28 1-28 269-296 (334)
51 cd06607 STKc_TAO Catalytic dom 68.1 1.7 3.6E-05 43.4 -0.0 19 1-19 247-265 (307)
52 COG3887 Predicted signaling pr 67.1 65 0.0014 36.0 11.6 122 178-316 179-300 (655)
53 PF11294 DUF3095: Protein of u 65.8 1.1E+02 0.0024 32.3 12.8 160 172-351 25-196 (373)
54 cd06634 STKc_TAO2 Catalytic do 65.7 7.3 0.00016 38.9 4.1 21 1-21 247-267 (308)
55 PRK09776 putative diguanylate 60.7 62 0.0013 38.4 11.2 79 172-256 695-773 (1092)
56 KOG1025|consensus 60.4 3.6 7.8E-05 47.3 0.8 29 1-29 933-961 (1177)
57 cd07834 STKc_MAPK Catalytic do 51.6 5.3 0.00012 40.1 0.3 20 1-20 269-288 (330)
58 cd07849 STKc_ERK1_2_like Catal 50.3 5.1 0.00011 40.6 -0.1 20 1-20 272-291 (336)
59 PRK09581 pleD response regulat 49.9 1.7E+02 0.0038 30.3 11.5 57 173-230 323-379 (457)
60 PF01255 Prenyltransf: Putativ 49.2 66 0.0014 31.3 7.5 82 172-276 40-125 (223)
61 PRK14835 undecaprenyl pyrophos 46.3 1E+02 0.0023 31.1 8.5 83 172-277 87-173 (275)
62 cd07852 STKc_MAPK15 Catalytic 45.5 7.7 0.00017 39.2 0.3 20 1-20 275-294 (337)
63 cd07858 STKc_TEY_MAPK_plant Ca 45.5 6.6 0.00014 39.8 -0.2 20 1-20 271-290 (337)
64 cd07859 STKc_TDY_MAPK_plant Ca 44.6 8 0.00017 38.8 0.3 20 1-20 270-289 (338)
65 cd06633 STKc_TAO3 Catalytic do 43.2 7.7 0.00017 38.9 -0.1 19 1-19 253-271 (313)
66 PF05165 GGDN: GGDN family; I 43.2 2.4E+02 0.0052 28.1 10.2 83 178-277 3-89 (246)
67 cd07851 STKc_p38 Catalytic dom 42.7 8.4 0.00018 39.2 0.1 19 1-19 278-296 (343)
68 PRK14834 undecaprenyl pyrophos 42.6 1.3E+02 0.0028 30.1 8.4 83 172-277 60-144 (249)
69 cd07879 STKc_p38delta_MAPK13 C 42.1 8.5 0.00018 39.2 0.0 19 1-19 277-295 (342)
70 KOG0196|consensus 41.5 7.7 0.00017 44.4 -0.4 28 1-28 867-894 (996)
71 PRK14839 undecaprenyl pyrophos 40.6 1.1E+02 0.0024 30.3 7.5 83 172-277 55-139 (239)
72 PRK14828 undecaprenyl pyrophos 40.4 1.4E+02 0.0031 29.9 8.4 82 172-277 73-154 (256)
73 PRK14838 undecaprenyl pyrophos 38.9 1.1E+02 0.0025 30.3 7.4 83 172-277 56-138 (242)
74 PRK14841 undecaprenyl pyrophos 38.2 1.2E+02 0.0025 30.0 7.3 83 172-277 49-133 (233)
75 cd07855 STKc_ERK5 Catalytic do 37.0 12 0.00025 37.9 0.1 20 1-20 274-293 (334)
76 cd07854 STKc_MAPK4_6 Catalytic 36.8 12 0.00025 38.1 0.0 19 1-19 280-298 (342)
77 cd07856 STKc_Sty1_Hog1 Catalyt 36.0 13 0.00027 37.8 0.1 18 1-18 268-285 (328)
78 TIGR00055 uppS undecaprenyl di 35.3 1.5E+02 0.0032 29.2 7.4 83 172-277 45-129 (226)
79 PRK10240 undecaprenyl pyrophos 33.6 1.7E+02 0.0038 28.7 7.6 83 172-277 39-123 (229)
80 PRK14842 undecaprenyl pyrophos 33.5 1.6E+02 0.0035 29.2 7.4 83 172-277 54-138 (241)
81 PRK14840 undecaprenyl pyrophos 33.3 1.5E+02 0.0032 29.6 7.2 83 172-277 68-152 (250)
82 PRK14833 undecaprenyl pyrophos 33.3 1.4E+02 0.0031 29.4 7.0 83 172-277 50-134 (233)
83 cd00475 CIS_IPPS Cis (Z)-Isopr 32.6 1.5E+02 0.0033 28.9 7.0 83 172-277 46-130 (221)
84 PF14775 NYD-SP28_assoc: Sperm 32.2 2.1E+02 0.0045 22.1 6.3 45 108-152 14-60 (60)
85 PRK14837 undecaprenyl pyrophos 31.7 2E+02 0.0044 28.3 7.7 82 172-277 52-136 (230)
86 cd07850 STKc_JNK Catalytic dom 30.8 17 0.00036 37.1 0.1 19 1-19 291-309 (353)
87 PTZ00267 NIMA-related protein 30.5 35 0.00076 36.8 2.5 19 1-19 303-321 (478)
88 cd07857 STKc_MPK1 Catalytic do 30.2 19 0.00042 36.2 0.4 18 1-18 272-289 (332)
89 PRK14830 undecaprenyl pyrophos 30.0 2.3E+02 0.0049 28.3 7.9 83 172-277 68-152 (251)
90 cd05585 STKc_YPK1_like Catalyt 29.9 16 0.00034 36.6 -0.3 23 1-23 224-246 (312)
91 PRK14832 undecaprenyl pyrophos 29.2 2.2E+02 0.0048 28.5 7.6 83 172-277 64-148 (253)
92 cd07876 STKc_JNK2 Catalytic do 28.6 20 0.00044 36.5 0.2 19 1-19 295-313 (359)
93 COG2429 Archaeal GTP cyclohydr 27.4 2.3E+02 0.0049 28.0 7.0 85 176-277 4-92 (250)
94 PRK14140 heat shock protein Gr 27.0 3.3E+02 0.0072 26.0 8.1 63 140-224 82-144 (191)
95 PRK00286 xseA exodeoxyribonucl 26.4 7.3E+02 0.016 26.5 11.7 91 66-158 308-398 (438)
96 cd07609 BAR_SIP3_fungi The Bin 26.4 6.1E+02 0.013 24.6 12.1 44 63-106 4-47 (214)
97 cd05582 STKc_RSK_N N-terminal 26.3 20 0.00042 35.9 -0.4 22 1-22 229-252 (318)
98 cd07874 STKc_JNK3 Catalytic do 25.9 23 0.0005 36.1 0.0 19 1-19 291-309 (355)
99 PF01025 GrpE: GrpE; InterPro 25.8 3.6E+02 0.0077 24.4 8.0 35 192-226 86-120 (165)
100 TIGR00237 xseA exodeoxyribonuc 25.3 8.3E+02 0.018 26.2 11.8 89 69-159 306-394 (432)
101 PLN00181 protein SPA1-RELATED; 24.3 90 0.002 36.1 4.5 19 2-20 246-264 (793)
102 PRK14163 heat shock protein Gr 23.3 7E+02 0.015 24.3 10.6 58 140-226 85-142 (214)
103 COG1353 Predicted CRISPR-assoc 23.2 3.5E+02 0.0077 31.6 9.0 115 171-307 519-655 (799)
104 KOG4496|consensus 22.9 2E+02 0.0043 26.4 5.3 31 62-92 29-59 (194)
105 PF08247 ENOD40: ENOD40 protei 22.6 29 0.00063 18.1 0.0 6 1-6 1-6 (12)
106 PRK14836 undecaprenyl pyrophos 22.5 2.1E+02 0.0046 28.6 6.1 83 172-277 60-144 (253)
107 COG4191 Signal transduction hi 22.1 1.2E+03 0.025 26.4 15.9 84 191-282 453-536 (603)
108 KOG1023|consensus 22.0 1.2E+02 0.0025 33.4 4.5 34 99-132 219-255 (484)
109 cd07853 STKc_NLK Catalytic dom 21.0 33 0.00072 35.2 0.1 19 1-19 268-286 (372)
110 PF10146 zf-C4H2: Zinc finger- 20.8 8.1E+02 0.018 24.1 10.9 26 63-88 25-50 (230)
111 PF09602 PhaP_Bmeg: Polyhydrox 20.6 7.1E+02 0.015 23.3 10.6 88 63-150 8-107 (165)
112 cd00446 GrpE GrpE is the adeni 20.6 6E+02 0.013 22.5 8.4 63 140-224 30-92 (137)
113 cd05570 STKc_PKC Catalytic dom 20.4 28 0.00061 34.9 -0.6 15 1-15 227-241 (318)
No 1
>KOG1023|consensus
Probab=100.00 E-value=9.1e-56 Score=466.17 Aligned_cols=280 Identities=58% Similarity=0.944 Sum_probs=261.4
Q ss_pred CccccCCCCCCCCChhhHHHHhhcccCCCCCccchhhcccccCCccccccccceeecCCcccchhHHHHHHHHHHHHhHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQGRGRGHLLLLSLRYKNPHLGLRLKSLLYIDSPRKVNFVDTMFQMLEKYSNNLE 80 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~d~m~~mle~y~~~LE 80 (487)
|++||.|+|++||+|..|+..++.++.++ ..|.|++|+|++|||+|+++||
T Consensus 200 ~~~cw~e~P~~rPs~~~i~~~~~~~~~~~-----------------------------~~~~nl~D~m~~~le~Y~~nLe 250 (484)
T KOG1023|consen 200 VARCWEEIPEKRPSIEQIRSKLLTINKGG-----------------------------SSKGNLMDSLFRMLESYADNLE 250 (484)
T ss_pred HHHhcccChhhCccHHHHHhhhhhhcccc-----------------------------cccchhHHHHHHHHHHHHhhhH
Confidence 47999999999999999999999998764 1467999999999999999888
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHhhcCCCccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHH
Q psy13820 81 DLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPSSVAEKL 160 (487)
Q Consensus 81 ~lVee~~~~L~~ek~~te~ll~~mlp~~v~~vd~m~~~le~~s~~le~~i~er~~~l~~ek~k~~~LL~~~LP~~va~~L 160 (487)
.+|+||+. ++.++++|.+.||.++||+.|++.+
T Consensus 251 ~~v~eRt~-----------------------------------------------~l~~e~~k~d~LL~~mLP~~VA~~l 283 (484)
T KOG1023|consen 251 KLVDERTA-----------------------------------------------ELEEEKKKTDTLLGQMLPKSVAESL 283 (484)
T ss_pred HHHHHHHH-----------------------------------------------HHHHHHHHHHHHHHHhcCHHHhhHh
Confidence 88877666 3556666777888888888999999
Q ss_pred hcCCCCCCCCceeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCc-hh
Q psy13820 161 KLGMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIP-DH 239 (487)
Q Consensus 161 ~~g~~~~~~~~~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~-~~ 239 (487)
+.|..+.++.+.+|||+|+||+|||.++..++|.+++.+||++|+.|+.+|++|++|+|+++||+||+++|+|..++ .|
T Consensus 284 k~G~~v~pe~~~~vti~fsDiv~fT~l~~~~~P~~vv~~lNdlyt~Fd~ii~~~d~yKVetiGDaYmvvSglp~~n~~~H 363 (484)
T KOG1023|consen 284 KLGKTVDPESFDSVTIYFSDIVGFTVLSSNSTPIQVVTLLNDLYTTFDRIIDKHDVYKVETIGDAYMVVSGLPIRNGYRH 363 (484)
T ss_pred hcCCcCCccccCceeeeeHHHHHHHHHHhcCCCceeeeeccchHHhhhhcccccCCeeEeccCcceeecccCceecHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887 59
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCCCeEEEEeeeecceEEeEeCCCCCcceeeCcHHHHHHHHHhcCCCCcEEecHHHH
Q psy13820 240 ADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTK 319 (487)
Q Consensus 240 a~~a~~~Al~i~~~l~~~~~~~~~~~~l~vRIGIhtG~Vv~GvvG~~~~~y~v~GdtVN~AsRLes~a~~g~IlVSe~t~ 319 (487)
+.+++.++++++..+..+..+|.+..++++|||+|+|||++||||.++|+||+||||||+|+|||+.+. +.|++|++++
T Consensus 364 ~~eia~msl~~~~~~~~f~i~H~P~~~l~iRig~~sg~~~agVvgl~mPRYclFgDtvn~AsrMes~G~-~~i~~s~~~~ 442 (484)
T KOG1023|consen 364 AREIASMALGLRSFLESFSLPHRPWEKLRLRIGFHSGPVVAGVVGLKMPRYCLFGDTVNTASRMESNGK-LMIHLSEEAK 442 (484)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCchhhheeeccccCCceecccccCCCcccchhhHHHHHhhhhhcCC-eEEEecHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHhhcCCCeeEEEeceEEecCcCcceEEEEecccCCCC
Q psy13820 320 AKLDQVGDYQLEYRGETELKGKGKMPTYWLLGKKGFYK 357 (487)
Q Consensus 320 ~~L~~~~~f~~~~~G~i~lKGkg~~~ty~l~~~~~~~~ 357 (487)
..|...+.|..+.+|.+.+||||.+.|||+.|......
T Consensus 443 ~~l~~~~~~~~e~rG~v~~kgkg~~~t~wl~g~~~~~~ 480 (484)
T KOG1023|consen 443 NLLTERPQFETEERGLVELKGKGVMSTYWLLGESSKSR 480 (484)
T ss_pred HHHHhcCceeeeccCcEEeecCceeeeEEeccCccccc
Confidence 99986679999999999999999999999999877543
No 2
>KOG4171|consensus
Probab=100.00 E-value=4.3e-51 Score=435.22 Aligned_cols=237 Identities=51% Similarity=0.811 Sum_probs=220.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHhcCCCCCCCCceeEEEEEEecCCchhhhccCCch
Q psy13820 115 MFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPSSVAEKLKLGMPVDPEDFREVTIYFSDIVGFTTISAYSTPF 194 (487)
Q Consensus 115 m~~~le~~s~~le~~i~er~~~l~~ek~k~~~LL~~~LP~~va~~L~~g~~~~~~~~~~vTVLF~DIvgFT~ls~~~~p~ 194 (487)
+...+|+.++.|++ .++.++.||+|++.||..++|+.||++|..|+.+.+.++.+|||||+||+|||.++..++|.
T Consensus 388 l~~~lE~~~~~Le~----~~~~Le~EKkkTd~LLy~mlP~~VA~qLr~g~~v~a~~f~~vTilFsdIv~Ft~ic~~ctp~ 463 (671)
T KOG4171|consen 388 LNLELEKLKEKLEK----MTRELEEEKKKTDTLLYSMLPRSVAQQLRQGESVDAKEFDDVTILFSDIVGFTAICSQCTPM 463 (671)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHhCCHHHHHHHHcCCCcCccccCceEEEEeccchHHhHhhccCcH
Confidence 34455555555554 45579999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHHHHhhhhhhcCCCCCCeEEEEeee
Q psy13820 195 EVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLH 274 (487)
Q Consensus 195 evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~~~l~~~~~~~~~~~~l~vRIGIh 274 (487)
+++.+||++|+.||+++..|++|||+|+||+||++.|+|.....||..+|.+||.|....++...+. .+.++.+|||||
T Consensus 464 ~vV~~LN~lyt~fD~~i~~~~VYKVETIGDaYm~vsG~P~~~~~HAe~i~~~AL~Mm~~ak~v~~p~-~~~pi~iRiGIH 542 (671)
T KOG4171|consen 464 QVVNMLNELYTRFDRIIDTHDVYKVETIGDAYMVVSGLPDASDYHAEHIADLALGMMEEAKEVVSPV-TGEPIQIRIGIH 542 (671)
T ss_pred HHHHHHHHHHHHHHHhhcccCeEEEeeccchheeecCCCCCChhHHHHHHHHHHHHHHHhhhhcCcC-CCCceEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999988776544 467999999999
Q ss_pred ecceEEeEeCCCCCcceeeCcHHHHHHHHHhcCCCCcEEecHHHHHHhhcCCCeeEEEeceEEecCcCcceEEEEecccC
Q psy13820 275 TGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWLLGKKG 354 (487)
Q Consensus 275 tG~Vv~GvvG~~~~~y~v~GdtVN~AsRLes~a~~g~IlVSe~t~~~L~~~~~f~~~~~G~i~lKGkg~~~ty~l~~~~~ 354 (487)
+|+|++||||.++||||+||+|||+|+|||+.+.||+|+||+.||+.|...+.|.|+++|.+.+||+|.+.+|||....+
T Consensus 543 sG~VvAGVVG~kmPRYCLFGdTVn~AsrmES~s~p~KI~vS~~T~~~l~~~~~f~f~pRg~v~vk~kg~m~tyFL~~~~~ 622 (671)
T KOG4171|consen 543 SGPVVAGVVGVKMPRYCLFGDTVNLASRMESSSVPGKINVSPTTYRKLKKQGSFEFEPRGRVEVKGKGPMETYFLERSLG 622 (671)
T ss_pred cCCeeeeeecccccceeecCCchhhhhhhhcCCCCceEEeCHHHHHHHHhCCCceeeecCccccCCCCceEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999998777999999999999999999999987765
Q ss_pred CC
Q psy13820 355 FY 356 (487)
Q Consensus 355 ~~ 356 (487)
..
T Consensus 623 ~~ 624 (671)
T KOG4171|consen 623 PS 624 (671)
T ss_pred CC
Confidence 43
No 3
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=100.00 E-value=7e-36 Score=279.77 Aligned_cols=181 Identities=41% Similarity=0.656 Sum_probs=169.0
Q ss_pred CCceeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHH
Q psy13820 169 EDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMAL 248 (487)
Q Consensus 169 ~~~~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al 248 (487)
++++++||||+||+|||.+++..+|++++.+||.++..+++++.+|+|++++++||++|++||.|....+++..|+++|+
T Consensus 4 ~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~Gd~~~~~f~~~~~~~~~~~~a~~~al 83 (184)
T PF00211_consen 4 EQYRNVTVLFADIVGFTDLTEQLDPEELVRLLNDFFSSLDRIVKQHGGEIIKFIGDGVMAVFGLPEPDEDAAERAVQFAL 83 (184)
T ss_dssp EEEEEEEEEEEEETTHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEETTEEEEEESSSSCHCHHHHHHHHHHH
T ss_pred cccCeEEEEEEEecCcHHHHHhCCchhHHHHHHHHHHHhhhccccccccccccccceeEEEecccccccccccccccccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred HHHHHhhhhhhcCCCCCCeEEEEeeeecceEEeEeCCCCCcceeeCcHHHHHHHHHhcCCCCcEEecHHHHHHhhcCCCe
Q psy13820 249 DLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDY 328 (487)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~l~vRIGIhtG~Vv~GvvG~~~~~y~v~GdtVN~AsRLes~a~~g~IlVSe~t~~~L~~~~~f 328 (487)
++.+.+++++... ..++.+|||||+|+|++|++|..++.|++||++||+|+||++.|.+++|+||+++++.+.....|
T Consensus 84 ~~~~~~~~~~~~~--~~~~~~rIGI~~G~v~~g~~G~~~~~~~v~G~~vn~Aarl~~~a~~~~i~vs~~v~~~l~~~~~~ 161 (184)
T PF00211_consen 84 ALLEALERLNKES--GPPLSVRIGIHTGPVVVGVVGSRRPEYDVFGDAVNIAARLESLAPPGQILVSEEVYDALNESDQF 161 (184)
T ss_dssp HHHHHHHHHHHHH--HSS-EEEEEEEEEEEEEEEEESSSEEEEEESHHHHHHHHHHHTSSTTSEEEEHHHHHHHTTHTTE
T ss_pred chhhccccccccc--ceeeeeeccccccccccccccCcccceeeeehhhhhhHHHHHhhcccccccCHHHHHHhcccCce
Confidence 9999998776654 46799999999999999999976779999999999999999999999999999999999954689
Q ss_pred eEEEeceEEecCcCcceEEEEec
Q psy13820 329 QLEYRGETELKGKGKMPTYWLLG 351 (487)
Q Consensus 329 ~~~~~G~i~lKGkg~~~ty~l~~ 351 (487)
.++++|.+.+||++.+.+|++.|
T Consensus 162 ~~~~~g~~~lkG~~~~~~y~~~~ 184 (184)
T PF00211_consen 162 RFEELGRVELKGKGPVQTYQLNG 184 (184)
T ss_dssp EEEEEEEEEETTSSEEEEEEEE-
T ss_pred EEEEeeeEEEecCCCcEEEEEEC
Confidence 99999999999999999999864
No 4
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=100.00 E-value=4.8e-34 Score=270.18 Aligned_cols=184 Identities=57% Similarity=0.864 Sum_probs=172.5
Q ss_pred HHHHHHHHHhccCChHHHHHHhcCC-CCCCCCceeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEE
Q psy13820 140 EKKKTEQLLNRMLPSSVAEKLKLGM-PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYK 218 (487)
Q Consensus 140 ek~k~~~LL~~~LP~~va~~L~~g~-~~~~~~~~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~ 218 (487)
|+++++++|.+|+|+.|++.+..|. +....+.+++||+|+||+|||.+++..++++++.++|.++..+.+++.+|||++
T Consensus 2 ~~~~~~~ll~~~lP~~v~~~l~~g~~~~~~~~~~~~tvlf~di~g~t~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gg~v 81 (194)
T smart00044 2 EKRKTDRLLDQLLPASVAESLKRGGSPVPAESYDNVTILFTDIVGFTTLSSEATPEQVVTLLNDLYSRFDRIIDRHGGYK 81 (194)
T ss_pred hHHHHHHHHHHhCCHHHHHHHHhCCCCccccccCeEEEEEeEhhhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCeEE
Confidence 6778999999999999999999987 566788899999999999999999999999999999999999999999999999
Q ss_pred EeeeCCEEEEEecCCCCC-chhHHHHHHHHHHHHHHhhhhhhcCCCCCCeEEEEeeeecceEEeEeCCCCCcceeeCcHH
Q psy13820 219 VETIGDAYMVVGGLPVRI-PDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTV 297 (487)
Q Consensus 219 vk~iGD~~mavfGlp~~~-~~~a~~a~~~Al~i~~~l~~~~~~~~~~~~l~vRIGIhtG~Vv~GvvG~~~~~y~v~GdtV 297 (487)
++++||++|++||.|... .+|+.+|+.+|+++++.+..++... ...++++|||||+|+|++|.+|...++|+++|++|
T Consensus 82 ~~~~Gd~~l~~F~~~~~~~~~~a~~a~~~al~l~~~~~~~~~~~-~~~~l~~riGih~G~v~~~~~g~~~~~~~~~G~~v 160 (194)
T smart00044 82 VKTIGDAYMVVSGLPTEALVDHAELAADEALDMVESLKTVLSQH-RGNGLRVRIGIHTGPVVAGVVGITMPRYCLFGDTV 160 (194)
T ss_pred EEEeCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHHHHHHhhc-cCCCeeEEEEEeccceEEEecCCCCceeEEeChHH
Confidence 999999999999999877 4999999999999999998876544 36689999999999999999999888999999999
Q ss_pred HHHHHHHhcCCCCcEEecHHHHHHhhc
Q psy13820 298 NTASRLESTGAPWRIHLSADTKAKLDQ 324 (487)
Q Consensus 298 N~AsRLes~a~~g~IlVSe~t~~~L~~ 324 (487)
|+|+||++.+++|+|+||+++++.|..
T Consensus 161 n~AarL~~~a~~g~i~vs~~~~~~l~~ 187 (194)
T smart00044 161 NLASRMESVGDPGQILVSEETYSLLRR 187 (194)
T ss_pred HHHHHHHhcCCCCeEEECHHHHHHHHh
Confidence 999999999999999999999999963
No 5
>KOG3619|consensus
Probab=100.00 E-value=1.6e-32 Score=303.17 Aligned_cols=311 Identities=27% Similarity=0.437 Sum_probs=227.0
Q ss_pred HHHHHHHHHHHHHhccCChHHHHHHhcCCCCC--------------CCCceeEEEEEEecCCchhhhccCCchhHHHHHH
Q psy13820 136 QLDIEKKKTEQLLNRMLPSSVAEKLKLGMPVD--------------PEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLN 201 (487)
Q Consensus 136 ~l~~ek~k~~~LL~~~LP~~va~~L~~g~~~~--------------~~~~~~vTVLF~DIvgFT~ls~~~~p~evv~lLn 201 (487)
.++.++++.++||.+.+|++++..++...... ...+.+|+|+|+||+|||.+++++++++++.+||
T Consensus 61 ~l~~~~~~qerlllsvlp~~va~~m~~~i~~~~~~~~~~~~f~~iy~~~h~nVSIl~adivgft~l~s~~saqelv~~Ln 140 (867)
T KOG3619|consen 61 ELETEKQQQERLLLSVLPAHVAMEMKKDIIESSARCKNDNQFHKLYIQRHDNVSILFADIVGFTQLASQCSAQELVKVLN 140 (867)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcchhhhccchhheeeccchHhhHHHHhhhhhhhcCCCHHHHHHHHH
Confidence 57889999999999999999998875432111 2457899999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHHHHhhhhhhcCCCCCCeEEEEeeeecceEEe
Q psy13820 202 DLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAG 281 (487)
Q Consensus 202 ~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~~~l~~~~~~~~~~~~l~vRIGIhtG~Vv~G 281 (487)
++|..||+++.++++..+|+.||+|.|++|+|.+.++||..++.+.++|.++++...... +.++++|||||+|+|.||
T Consensus 141 eLf~rfd~lA~~~~clRiKiLGdcyyCvsglp~~~~dHA~~~v~mgl~Mi~aI~~vr~at--~~dvnmrvGihsG~Vl~G 218 (867)
T KOG3619|consen 141 ELFARFDRLAAENHCLRIKILGDCYYCVSGLPEARPDHAVCCVEMGLDMIKAIKQVREAT--GVDVNMRVGIHSGSVLCG 218 (867)
T ss_pred HHHHHHHHHHHhcceEeeeeecceeEEecCCCCCChhHHHHHHHHHHHHHHHHHHHHHHh--CCCCceEEEEecCceeec
Confidence 999999999999999999999999999999999999999999999999999999776543 668999999999999999
Q ss_pred EeCCCCCcceeeCcHHHHHHHHHhcCCCCcEEecHHHHHHhhcCCCeeEEEeceEE---ecCcCcceEEEEecccCCCCC
Q psy13820 282 VVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETE---LKGKGKMPTYWLLGKKGFYKE 358 (487)
Q Consensus 282 vvG~~~~~y~v~GdtVN~AsRLes~a~~g~IlVSe~t~~~L~~~~~f~~~~~G~i~---lKGkg~~~ty~l~~~~~~~~~ 358 (487)
++|.++++||+||..|.+|.+||+.|.||+||||+.|.+.|. +.|.+++--... .--+-.+.||++........+
T Consensus 219 vlG~~kwq~DVws~dv~lAn~mEs~G~pgrVhis~~Tl~~L~--g~yeve~g~g~~r~~~l~~~~~~ty~i~~~~~~~~~ 296 (867)
T KOG3619|consen 219 VLGLRKWQYDVWSNDVTLANHMEAGGVPGRVHISKATLDCLN--GEYEVEPGHGGERDPYLKEHGIETYLIIPPSKRRKS 296 (867)
T ss_pred ccccceeeeeeccchhhhhhhhhhcCCCceeEechhHHHHhC--CCceeecCCCcccchHHHhcCCceEEeccccccccc
Confidence 999999999999999999999999999999999999999998 468777642211 111234678887754311111
Q ss_pred CCCCCCCCCCCCCchhhhccCC-CCCCccccCCchhhcccCCCCccccCCCCCCCcchhhhhhccCCCCCCC-Ccchhch
Q psy13820 359 LPTPPPLGDSHGLDENLILYGR-TGPSTTIDLSPTEARSNHSSRSLQTSPGPGRTSQEHAVQLHRSPRNNGK-SQTQKTS 436 (487)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 436 (487)
.+.. ..+..... ..+.... +.+.. ...+...... ... +-.++++.. .......
T Consensus 297 ~~~~----------~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~ 351 (867)
T KOG3619|consen 297 PPES----------THLIRSASDAAPKMAA--STRMP------RYAEVDGAAS-LFG------AENPFSNVTSVASRPSR 351 (867)
T ss_pred chhh----------hcccCcccccccCccc--ccccc------hhhhhccccc-ccc------ccCchhhhhhccCCcch
Confidence 1000 00000000 0001000 00000 0000000000 000 001111111 3345678
Q ss_pred HHHHHHhhcchhhhhh----hhcc-------chhhhhhhhhhhcccceeE
Q psy13820 437 QNKILSQILSLDSTME----DATR-------LSAHKKYKYMKQNTFDSCF 475 (487)
Q Consensus 437 ~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~ 475 (487)
+++.+.+.++.++++. +..+ .+.+|||+++.++.|.++|
T Consensus 352 ~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~f~~~~ 401 (867)
T KOG3619|consen 352 VPRRISREIDRRSTDELRSEDMNPFELRFKNIELEKKYSQCRDEYFTSPL 401 (867)
T ss_pred hhhHHHHhhcccchhhhhhhhcchHhhcccccchhhcchhhhhhhhhHHH
Confidence 8899999999998833 3333 6789999999999999875
No 6
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=99.98 E-value=3.9e-31 Score=257.61 Aligned_cols=194 Identities=30% Similarity=0.394 Sum_probs=159.1
Q ss_pred HHHHHhccCChHHHHHHhcCCCCCCCCceeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeC
Q psy13820 144 TEQLLNRMLPSSVAEKLKLGMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIG 223 (487)
Q Consensus 144 ~~~LL~~~LP~~va~~L~~g~~~~~~~~~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iG 223 (487)
.+..+..+++..+...+..+. .. . +.+||||+||+|||++++..+|+.++.++|.++..+..++.+|||.++|++|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~-~~-~--~~vtilfaDi~g~T~l~~~~~~~~~~~ll~~~~~~~~~~v~~~gG~v~k~iG 96 (227)
T COG2114 21 SDLVLRLYLARVVGRLLARGG-AG-D--RRVTLLFADIVGSTELSESLGDEALVELLNLYFDAVAEVVARHGGRVVKFIG 96 (227)
T ss_pred hhHHHHHHhhhccchhhcccc-cc-C--ceEEEEEEeeccchHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 334555566666666665543 11 1 8999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEecCCCCCchhHHHHHH-HHHHHHHHhhhhhhcCCCCCCeEEEEeeeecceEEeEeCCCCCcceeeCcHHHHHHH
Q psy13820 224 DAYMVVGGLPVRIPDHADQIAT-MALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASR 302 (487)
Q Consensus 224 D~~mavfGlp~~~~~~a~~a~~-~Al~i~~~l~~~~~~~~~~~~l~vRIGIhtG~Vv~GvvG~~~~~y~v~GdtVN~AsR 302 (487)
|++|++||.|.+.+ +|..++. +++++......++. ..+++|||||+|+|++|.+|. |++||++||+|+|
T Consensus 97 D~~la~F~~p~~~~-~A~~~a~~~~~~~~~~~~~~~~-----~~l~~riGi~~G~vv~~~~g~----~~~~G~~VN~AaR 166 (227)
T COG2114 97 DGFLAVFGRPSPLE-DAVACALDLQLALRNPLARLRR-----ESLRVRIGIHTGEVVVGNTGG----YTVVGSAVNQAAR 166 (227)
T ss_pred ceEEEEeCCCCCcH-HHHHHHHHHHHHHHHHHhhccC-----cCeeEEEEEEeecEEEEeecC----eeEechHhHHHHH
Confidence 99999999998766 3333333 44455555443322 128999999999999999987 9999999999999
Q ss_pred HHhcCCCCcEEecHHHHHHhhcCCCeeEEEeceEEecCcCcceEEEEecc
Q psy13820 303 LESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWLLGK 352 (487)
Q Consensus 303 Les~a~~g~IlVSe~t~~~L~~~~~f~~~~~G~i~lKGkg~~~ty~l~~~ 352 (487)
||++++||+|++|+.+++.+.. ..+.+...|.+.+||++.+...|.+..
T Consensus 167 Le~~a~~g~i~iS~~~~~~~~~-~~~~~~~~g~~~lkg~~~~~~v~~~~~ 215 (227)
T COG2114 167 LESLAKPGQVLLSEATYDLVRD-LVDLFSGLGSHRLKGLARPVRVYQLCH 215 (227)
T ss_pred HHHhcCCCeEEEcHHHHHHHhh-hhhhhhcCCceecCCCCCceEEEEecc
Confidence 9999999999999999999984 357888999999999988877666543
No 7
>KOG3618|consensus
Probab=99.98 E-value=3.4e-33 Score=295.77 Aligned_cols=289 Identities=26% Similarity=0.447 Sum_probs=225.7
Q ss_pred ccccccccceeecCCcccchhHHHHHHHHHHHHhHHHHHHHHHHHhHHhhHHHHHHHHhhcCCCccHHHHHHHHHHHHhH
Q psy13820 45 HLGLRLKSLLYIDSPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSN 124 (487)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~n~~d~m~~mle~y~~~LE~lVee~~~~L~~ek~~te~ll~~mlp~~v~~vd~m~~~le~~s~ 124 (487)
++.+++-.-.+++.....-++.+.+++-..+.+--+.+.-. ++|+.|+.-+++++.+.+|++|+ |.++..-..-+.
T Consensus 228 ~l~~r~~lH~~vHliGVHlfim~qVR~R~TFlKVGQs~l~r--kdLE~EkqlKe~MIhSVMP~kvA--D~Llk~g~~pS~ 303 (1318)
T KOG3618|consen 228 ELLSRGLLHGCVHLIGVHLFIMSQVRSRSTFLKVGQSILHR--KDLEVEKQLKERMIHSVMPRKVA--DDLLKQGDEPSE 303 (1318)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHHhhHHHHhh--hhhHHHHHHHHHHHHhhcChHHH--HHHHhhcCCCCc
Confidence 33444444566677777888888899988888876655533 57889999999999999999884 555432221111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHhcCCCCCCCCceeEEEEEEecCCchhhhccCCchhHHHHHHHH
Q psy13820 125 -NLEDLIRERTEQLDIEKKKTEQLLNRMLPSSVAEKLKLGMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDL 203 (487)
Q Consensus 125 -~le~~i~er~~~l~~ek~k~~~LL~~~LP~~va~~L~~g~~~~~~~~~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~ 203 (487)
+... ...+--+.++-+++++|..+ .-.|.......+|+|||+||+|||++++.-++++++.+||++
T Consensus 304 nd~~~--------~~~~s~~~r~~~s~~vk~~~-----~FRPF~M~~menVSILFADIvGFTkMSsnKsA~~LV~lLNDL 370 (1318)
T KOG3618|consen 304 NDVKR--------HATSSPKNRKKKSSIVKAPI-----AFRPFKMQQMENVSILFADIVGFTKMSSNKSAHALVGLLNDL 370 (1318)
T ss_pred ccccC--------CCCCCcccccchhhcccccc-----ccCchhhhhhhhhhhhhhhhhchhhccccccHHHHHHHHHHH
Confidence 1100 00011122223334444332 334445566789999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHHHHhhhhhhcCCCCCCeEEEEeeeecceEEeEe
Q psy13820 204 YTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVV 283 (487)
Q Consensus 204 ~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~~~l~~~~~~~~~~~~l~vRIGIhtG~Vv~Gvv 283 (487)
|..||++++..|++++.+.||+|.|+.|+|++..|||.++++|+|.|+.+++.|.... .+.+++|+|||||.|+||++
T Consensus 371 FgRFD~LC~l~gcEKISTLGDCYYCVaGCPEPraDHA~ccvEMGLgMI~AirqFd~~r--~e~VnMRVGvHTGtVlCGiv 448 (1318)
T KOG3618|consen 371 FGRFDRLCELTGCEKISTLGDCYYCVAGCPEPRADHAYCCVEMGLGMIKAIRQFDQER--KEMVNMRVGVHTGTVLCGIV 448 (1318)
T ss_pred HHHHHHHHHhcCcchhccccceeeeecCCCCCcccceeeehhhcchHHHHHHHHHHHh--hcccceEEEEecceEEeeee
Confidence 9999999999999999999999999999999999999999999999999999997754 45689999999999999999
Q ss_pred CCCCCcceeeCcHHHHHHHHHhcCCCCcEEecHHHHHHhhcCCCeeEEE------eceEEecCc------CcceEEEEec
Q psy13820 284 GLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEY------RGETELKGK------GKMPTYWLLG 351 (487)
Q Consensus 284 G~~~~~y~v~GdtVN~AsRLes~a~~g~IlVSe~t~~~L~~~~~f~~~~------~G~i~lKGk------g~~~ty~l~~ 351 (487)
|.+...||+|...||+|..||+.+.+|+||||++|.+.|.+ .|..++ .|...|.|. +...+|++.|
T Consensus 449 GtrRfKFDVwSNDV~LAN~MEssGvag~VHiSeaTak~L~d--~Ye~EeG~~~~g~~~~~V~g~~rRtnP~t~kt~li~G 526 (1318)
T KOG3618|consen 449 GTRRFKFDVWSNDVNLANLMESSGVAGKVHISEATAKYLDD--RYEMEEGKVIEGLGQSVVAGQLRRTNPGTLKTYLISG 526 (1318)
T ss_pred ecceEeeeeccCcchHHHHHHhcCCCcceEeeHHHHHHhcc--cceeccCccccccceeEEeceeeecCCcccceEEecC
Confidence 99988999999999999999999999999999999999984 455554 334445443 3477898888
Q ss_pred ccC
Q psy13820 352 KKG 354 (487)
Q Consensus 352 ~~~ 354 (487)
+.+
T Consensus 527 ~~g 529 (1318)
T KOG3618|consen 527 QRG 529 (1318)
T ss_pred ccc
Confidence 764
No 8
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=99.97 E-value=1.8e-29 Score=231.95 Aligned_cols=175 Identities=43% Similarity=0.626 Sum_probs=162.4
Q ss_pred eEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHHH
Q psy13820 173 EVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLH 252 (487)
Q Consensus 173 ~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~~ 252 (487)
++||+|+||+|||.+.+..+++++..++|.++..+++++.+|||+++++.||+++++|+.|...++++.+|+.||++|++
T Consensus 1 ~~~il~~di~~~t~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~gd~~~~~f~~~~~~~~~~~~A~~~a~~i~~ 80 (177)
T cd07302 1 EVTVLFADIVGFTALSERLGPEELVELLNEYFSAFDEIIERHGGTVDKTIGDAVMAVFGLPGAHEDHAERAVRAALEMQE 80 (177)
T ss_pred CEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCceEEEEeCCCCCchhHHHHHHHHHHHHHH
Confidence 48999999999999999899999999999999999999999999999999999999999999889999999999999999
Q ss_pred HhhhhhhcCCCCCCeEEEEeeeecceEEeEeCCCCCcceeeCcHHHHHHHHHhcCCCCcEEecHHHHHHhhcCCCeeEEE
Q psy13820 253 HSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEY 332 (487)
Q Consensus 253 ~l~~~~~~~~~~~~l~vRIGIhtG~Vv~GvvG~~~~~y~v~GdtVN~AsRLes~a~~g~IlVSe~t~~~L~~~~~f~~~~ 332 (487)
.+..++........+.+|||||+|++++|.+|...++|+++|++||+|+||++.+++|+|++|+++++.+... .|.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~riGi~~G~~~~g~~g~~~~~~~~~G~~v~~A~rl~~~a~~~~i~vs~~~~~~l~~~-~~~~~~ 159 (177)
T cd07302 81 ALAELNAEREGGPPLRLRIGIHTGPVVAGVVGSERPEYTVIGDTVNLAARLESLAKPGQILVSEATYELLGDA-GFEFEE 159 (177)
T ss_pred HHHHHhhcccCCCCeEEEEEEecceEEEEecCCCCcceeEecchHhHHHHHHhcCCCCEEEECHHHHHhhccC-ceEEEE
Confidence 9998876644566899999999999999999999779999999999999999999999999999999999842 799999
Q ss_pred eceEEecCcCcceEEE
Q psy13820 333 RGETELKGKGKMPTYW 348 (487)
Q Consensus 333 ~G~i~lKGkg~~~ty~ 348 (487)
.+.+.+||...+...|
T Consensus 160 ~~~~~l~~~~~~~~~y 175 (177)
T cd07302 160 LGEVELKGKSGPVRVY 175 (177)
T ss_pred eCCEEecCCCCceEEE
Confidence 9999999985554443
No 9
>KOG3619|consensus
Probab=99.97 E-value=7.8e-30 Score=281.87 Aligned_cols=217 Identities=33% Similarity=0.580 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChHHHHHHhcCC----CCCCCCceeEEEEEEecCCchhhhccC----CchhHHHHHHH
Q psy13820 131 RERTEQLDIEKKKTEQLLNRMLPSSVAEKLKLGM----PVDPEDFREVTIYFSDIVGFTTISAYS----TPFEVVDLLND 202 (487)
Q Consensus 131 ~er~~~l~~ek~k~~~LL~~~LP~~va~~L~~g~----~~~~~~~~~vTVLF~DIvgFT~ls~~~----~p~evv~lLn~ 202 (487)
.+..++.+.-++.++.||.++||.+||....... ....+.+..|.|||+-|.+|..+..+. ...+..++||+
T Consensus 604 ~~E~ee~e~m~~~Nr~LLeNiLPaHVA~HFl~~~~r~~eLY~qSy~~VgVMFASipnF~dFYsE~d~NneGlECLRlLNE 683 (867)
T KOG3619|consen 604 QEEKEEMETMQNLNRLLLENILPSHVAAHFLGSKKRNEELYHQSYDCVGVMFASIPNFKDFYSECDVNNEGLECLRLLNE 683 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHhhcccchHHHHHhhhceEEEEEEecCCcceeeeeecCCcccchHHHHHHH
Confidence 3444556666677788999999999998763222 233467899999999999998775544 34689999999
Q ss_pred HHHHHHHhhh--hc-CcEEEeeeCCEEEEEecCCCCC----------chhHHHHHHHHHHHHHHhhhhhhcCCCCCCeEE
Q psy13820 203 LYTCFDATIN--AY-NVYKVETIGDAYMVVGGLPVRI----------PDHADQIATMALDLLHHSGRFKIRHLPYTPLRL 269 (487)
Q Consensus 203 ~~~~~~~ii~--~~-gG~~vk~iGD~~mavfGlp~~~----------~~~a~~a~~~Al~i~~~l~~~~~~~~~~~~l~v 269 (487)
+...||+++. +| +..|+|++|-.|||+.|+-... ..|+...+.+|++|...+...|.. ....+.+
T Consensus 684 IIaDFDeLL~~pkF~~IEKIKTIGSTYMAAsGL~~~~~~~~~~~~~~~~h~~~l~eFAlal~~~L~~IN~~--SfNnF~L 761 (867)
T KOG3619|consen 684 IIADFDELLSKPKFSGVEKIKTIGSTYMAASGLNPTSAQENDQSLRQWSHLGALVEFALALMHKLDEINRH--SFNNFEL 761 (867)
T ss_pred HHhhHHHhcCccccccceeEEEecchhhhhhCCChhhhhccCcchhHHhhHHHHHHHHHHHHHHHHhhhHH--hhcccee
Confidence 9999999999 55 6799999999999999995321 157888999999999999987743 3567899
Q ss_pred EEeeeecceEEeEeCCCCCcceeeCcHHHHHHHHHhcCCCCcEEecHHHHHHhhcCCCeeEEEeceEEecCcCcceEEEE
Q psy13820 270 RIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWL 349 (487)
Q Consensus 270 RIGIhtG~Vv~GvvG~~~~~y~v~GdtVN~AsRLes~a~~g~IlVSe~t~~~L~~~~~f~~~~~G~i~lKGkg~~~ty~l 349 (487)
||||+.|||++||+|.++|+||+||.|||+|+||+++|.+|.|+|+++|+..|.. .+|.|..||.+.|||||++.|||+
T Consensus 762 rIGin~GpvvAGVIGArKPqYDIWGNTVNvASRMdSTGv~g~IQVTEEt~~iL~~-~gy~~~~RG~i~VKGkGel~Tyfl 840 (867)
T KOG3619|consen 762 RIGINHGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGVPGRIQVTEETANILQG-LGYRFECRGVINVKGKGELETYFL 840 (867)
T ss_pred eeceeccceeeeEecCCCCCccccccchhhhhcccccCCCCeEEecHHHHHHHhc-CCeeEEecceEEEecccceeEEEe
Confidence 9999999999999999999999999999999999999999999999999999998 589999999999999999999999
Q ss_pred e
Q psy13820 350 L 350 (487)
Q Consensus 350 ~ 350 (487)
.
T Consensus 841 ~ 841 (867)
T KOG3619|consen 841 C 841 (867)
T ss_pred c
Confidence 8
No 10
>KOG3618|consensus
Probab=99.95 E-value=1.9e-28 Score=259.91 Aligned_cols=219 Identities=31% Similarity=0.515 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHHHHhccCChHHHHHHhcCCCCCCCCceeEEEEEEecCCchhhhcc--CCchhHHHHHHHHHHHHHHhh
Q psy13820 134 TEQLDIEKKKTEQLLNRMLPSSVAEKLKLGMPVDPEDFREVTIYFSDIVGFTTISAY--STPFEVVDLLNDLYTCFDATI 211 (487)
Q Consensus 134 ~~~l~~ek~k~~~LL~~~LP~~va~~L~~g~~~~~~~~~~vTVLF~DIvgFT~ls~~--~~p~evv~lLn~~~~~~~~ii 211 (487)
+..++.-+.+.+-||++++|.++++.|+...... +.+.++.|+|+.|++|.++-+. .+..|..+.||++...||+++
T Consensus 1045 ~~riQ~mrdQADwLL~NiIP~HvaE~LK~~~kYS-eNH~~~gviFASIvNfnemYeEnyeGGkEflRVLNElIGDFDELL 1123 (1318)
T KOG3618|consen 1045 RTRIQSMRDQADWLLRNIIPYHVAEQLKVSQKYS-ENHDSGGVIFASIVNFNEMYEENYEGGKEFLRVLNELIGDFDELL 1123 (1318)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHhhcccccc-ccCccceEEEEEeccHHHHHHHhhhchHHHHHHHHHHhccHHHHh
Confidence 3456777788999999999999999998776543 6678999999999999999876 378899999999999999999
Q ss_pred hhc---CcEEEeeeCCEEEEEecCCCCC-------chhHHHHHHHHHHHHHHhhhhhhcCCCCCCeEEEEeeeecceEEe
Q psy13820 212 NAY---NVYKVETIGDAYMVVGGLPVRI-------PDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAG 281 (487)
Q Consensus 212 ~~~---gG~~vk~iGD~~mavfGlp~~~-------~~~a~~a~~~Al~i~~~l~~~~~~~~~~~~l~vRIGIhtG~Vv~G 281 (487)
.+= ..+++|+||-+|||++|+...+ .+|.....++|++|++.+..||.... .-.+.+|||++.|||.+|
T Consensus 1124 srPdf~~iEKIKTIG~tyMAASGLnp~~~~~~~hp~EHl~~l~eFa~amq~Vvd~FN~dlL-~Fnf~lrvG~NiGpvTAG 1202 (1318)
T KOG3618|consen 1124 SRPDFSSIEKIKTIGATYMAASGLNPAQAQDGSHPQEHLQILFEFAKAMQRVVDDFNNDLL-WFNFKLRVGFNIGPVTAG 1202 (1318)
T ss_pred ccccchhhHHHhhhhHHHHHhcCCChHHccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhh-heeeeEEeeccccCcccc
Confidence 884 4789999999999999995322 25888899999999999999986543 346899999999999999
Q ss_pred EeCCCCCcceeeCcHHHHHHHHHhcCCCCcEEecHHHHHHhhcCCCeeEEEeceEEecCcCcceEEEEecccCCC
Q psy13820 282 VVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWLLGKKGFY 356 (487)
Q Consensus 282 vvG~~~~~y~v~GdtVN~AsRLes~a~~g~IlVSe~t~~~L~~~~~f~~~~~G~i~lKGkg~~~ty~l~~~~~~~ 356 (487)
|+|+.+--||+||||||+|+||-+++.+++|+||++++..|.+ .|.|+++|.+.||||+.+.+|...++.+..
T Consensus 1203 VIGTtKLyYDIWGDtVNiASRMdsTGv~nRIQVs~~~~~~L~~--rYeFe~Rg~v~VKGkd~M~tyLy~~r~d~~ 1275 (1318)
T KOG3618|consen 1203 VIGTTKLYYDIWGDTVNIASRMDSTGVENRIQVSEESYRVLSK--RYEFEYRGTVNVKGKDQMKTYLYPKRTDHR 1275 (1318)
T ss_pred ccccceeeehhhcchhhhhhhccccCCcceeEecHHHHHHHHh--hccccccceEEEeccCcceeEEeccccCCC
Confidence 9999999999999999999999999999999999999999984 699999999999999999999998887654
No 11
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=99.34 E-value=4.7e-11 Score=104.16 Aligned_cols=132 Identities=42% Similarity=0.650 Sum_probs=115.0
Q ss_pred EEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHHHH
Q psy13820 174 VTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHH 253 (487)
Q Consensus 174 vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~~~ 253 (487)
++++++||.+|+.+.+..+......+|..+...+.+++..+++.+..+.||.++++|.. ....++..++..|.+.
T Consensus 2 ~~ll~i~i~~~~~i~~~~g~~~~~~~l~~~~~~l~~~~~~~~~~~~r~~~d~f~~l~~~-----~~~~~~~~~~~~i~~~ 76 (133)
T cd07556 2 VTILFADIVGFTSLADALGPDEGDELLNELAGRFDSLIRRSGDLKIKTIGDEFMVVSGL-----DHPAAAVAFAEDMREA 76 (133)
T ss_pred EEEEEEEchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCcEEEEeecceEEEEECc-----hHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999842 4556788888888887
Q ss_pred hhhhhhcCCCCCCeEEEEeeeecceEEeEeCCCCCcceeeCcHHHHHHHHHhcCCCCcEE
Q psy13820 254 SGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIH 313 (487)
Q Consensus 254 l~~~~~~~~~~~~l~vRIGIhtG~Vv~GvvG~~~~~y~v~GdtVN~AsRLes~a~~g~Il 313 (487)
+...... ....+.++||++.|++..+..|. .+.+..+|+.+|.|+++...+++++|+
T Consensus 77 ~~~~~~~--~~~~~~~~ig~~~g~~~~~~~~~-~~~~~~~~~~~~~a~~a~~~a~~~~i~ 133 (133)
T cd07556 77 VSALNQS--EGNPVRVRIGIHTGPVVVGVIGS-RPQYDVWGALVNLASRMESQAKAGQVL 133 (133)
T ss_pred HHHHHhc--cCCceEEEEEEecccEEEEeccC-CccceEEcHHHHHHHHHHhcCCCCCcC
Confidence 7654322 34468999999999999998887 668899999999999999999998763
No 12
>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins. The HNOB domain is predicted to function as a haem-dependent sensor for gaseous ligands, and transduce diverse downstream signals in both bacteria and animals.; GO: 0004383 guanylate cyclase activity, 0006182 cGMP biosynthetic process; PDB: 2P04_B 2P08_A 3HLS_E.
Probab=96.89 E-value=0.0014 Score=63.84 Aligned_cols=89 Identities=34% Similarity=0.455 Sum_probs=43.7
Q ss_pred cccceeecCCcccchhHHHHHHHHHHHHhH--HHHHHHHHHHhHHhhHHHHHHHHhhcCCCccHHHHHHHHHH-HHhHHH
Q psy13820 50 LKSLLYIDSPRKVNFVDTMFQMLEKYSNNL--EDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLE-KYSNNL 126 (487)
Q Consensus 50 ~~~~~~~~~~~~~n~~d~m~~mle~y~~~L--E~lVee~~~~L~~ek~~te~ll~~mlp~~v~~vd~m~~~le-~~s~~l 126 (487)
+++++|++.|. .+.++.|.++ +-|-+++ .+.-+|-+- .-+... ....+...++ +.++.|
T Consensus 128 ~~~ilFl~sP~-v~~l~el~~~-gl~lsD~p~Hd~~Rdlvl--~~~q~~--------------a~~~l~~~le~~~~~~L 189 (219)
T PF07701_consen 128 WDSILFLGSPV-VSSLEELRER-GLYLSDLPLHDATRDLVL--LGQQQS--------------AELKLAKQLEQEKSAEL 189 (219)
T ss_dssp TTEEEEEEEE----TT------------------EHHHHHH--HHHHHH--------------HHHHHHHHHH-HHHHHH
T ss_pred CCeEEEEcccc-cCCHHHHHHc-CCCccccCCcccHHHHHH--HHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 45667777775 3334444443 3455554 444444331 111111 1123334444 555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHH
Q psy13820 127 EDLIRERTEQLDIEKKKTEQLLNRMLPSSVAEKL 160 (487)
Q Consensus 127 e~~i~er~~~l~~ek~k~~~LL~~~LP~~va~~L 160 (487)
+ +.+++++++|+|+++||++++|+.||++|
T Consensus 190 e----~~~~~l~~ek~ktd~LL~~mlP~~VA~~L 219 (219)
T PF07701_consen 190 E----ESMRELEEEKKKTDELLYSMLPPSVADRL 219 (219)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHHHHhCCHHHHhhC
Confidence 4 55668999999999999999999999986
No 13
>KOG4721|consensus
Probab=94.97 E-value=0.048 Score=59.36 Aligned_cols=22 Identities=32% Similarity=0.853 Sum_probs=19.3
Q ss_pred CccccCCCCCCCCChhhHHHHh
Q psy13820 1 MRQCWAEPPDMRPDFNEVNDLF 22 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~~~ 22 (487)
|++||...|..||+|++|..-+
T Consensus 344 ~Kqcw~sKpRNRPSFrqil~Hl 365 (904)
T KOG4721|consen 344 LKQCWNSKPRNRPSFRQILLHL 365 (904)
T ss_pred HHHHHhcCCCCCccHHHHHHHH
Confidence 5899999999999999996544
No 14
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=94.37 E-value=0.52 Score=46.52 Aligned_cols=59 Identities=25% Similarity=0.267 Sum_probs=48.4
Q ss_pred eeEEEEEEecCCch-hhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEe
Q psy13820 172 REVTIYFSDIVGFT-TISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG 230 (487)
Q Consensus 172 ~~vTVLF~DIvgFT-~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavf 230 (487)
..|+|.-.||.++| .++...+|-+....+++++..+.+.+.+||+-.-=.-||-+|++.
T Consensus 126 ~~v~iAH~DI~d~T~~~Td~~~~ydt~~~I~~l~~~l~~~~~~~G~L~fylGGDNi~~v~ 185 (246)
T PF05165_consen 126 GYVQIAHFDINDSTGTYTDEESPYDTYLEIEDLYAKLMKYLEKYGSLAFYLGGDNIMAVC 185 (246)
T ss_dssp --EEEEEEEETTHHHHTTTTS-HHHHHHHHHHHHHHHHHHHHTTT---EEEETTEEEEE-
T ss_pred CceEEEEEeeeccchhhhcccChHHHHHHHHHHHHHHHHHHHhcCCEEEEecCceEEEEC
Confidence 57899999999999 999999999999999999999999999999887777799999986
No 15
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....
Probab=94.25 E-value=0.33 Score=42.68 Aligned_cols=81 Identities=10% Similarity=0.101 Sum_probs=63.8
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL 251 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~ 251 (487)
...++++++|.+|..+....+....-.+|..+...+...+.. +..+..+-+|.+++++ |....+.+..+.+.+..+.
T Consensus 31 ~~~~l~~i~i~~~~~l~~~~G~~~~~~~l~~i~~~L~~~~~~-~~~~~r~~~~~f~il~--~~~~~~~~~~~~~~~~~~~ 107 (161)
T PF00990_consen 31 EPFALVLIDIDNLDELNEKYGYEVGDEILRQIAKRLKKQLRE-SDILARLGDDEFAILL--PDTDSEEAEELAERLERLI 107 (161)
T ss_dssp SEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TSEEEEEETTEEEEEE--ETCTHHHHHHHHHHHHHHH
T ss_pred CCceEEEEeccccccccccccccccccccccccccccccccc-ccccccccchheeecc--cccccccchhhhhhhhhhh
Confidence 578999999999999999888888888999888888888877 6788888999999886 3333445566666666665
Q ss_pred HHhh
Q psy13820 252 HHSG 255 (487)
Q Consensus 252 ~~l~ 255 (487)
..+.
T Consensus 108 ~~~~ 111 (161)
T PF00990_consen 108 DELN 111 (161)
T ss_dssp HHHC
T ss_pred hhcc
Confidence 5554
No 16
>smart00267 GGDEF diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria
Probab=93.85 E-value=0.87 Score=39.71 Aligned_cols=77 Identities=12% Similarity=0.135 Sum_probs=58.1
Q ss_pred eEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHHH
Q psy13820 173 EVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLH 252 (487)
Q Consensus 173 ~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~~ 252 (487)
.+++++++|.+|..+....+.+..-.++..+...+...+.. +..+....+|.++++...+ . ...+...+..|..
T Consensus 34 ~~~l~~i~i~~~~~~~~~~g~~~~~~~l~~i~~~l~~~~~~-~~~~~r~~~~~f~ii~~~~--~---~~~~~~~~~~l~~ 107 (163)
T smart00267 34 PFALLLIDLDNFKDINDTYGHAVGDELLQEVAQRLSSCLRP-GDLLARLGGDEFALLLPET--S---LEEAIALAERILQ 107 (163)
T ss_pred eEEEEEEEccccchhhhccCchhHHHHHHHHHHHHHHhcCC-CCEEEEecCceEEEEecCC--C---HHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999888876 4567777788888886322 2 2234444555555
Q ss_pred Hhh
Q psy13820 253 HSG 255 (487)
Q Consensus 253 ~l~ 255 (487)
.+.
T Consensus 108 ~~~ 110 (163)
T smart00267 108 QLR 110 (163)
T ss_pred HHh
Confidence 554
No 17
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=92.99 E-value=1 Score=47.15 Aligned_cols=97 Identities=18% Similarity=0.183 Sum_probs=66.5
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL 251 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~ 251 (487)
...+++++||.+|..+....+.+.--.+|..+-..+...+.. +..+..+-||.+.++. |.. ....+...+-.+.
T Consensus 235 ~~~~ll~idId~Fk~INd~~Gh~~GD~lL~~vA~~L~~~l~~-~d~laRlggdeFavll--~~~---~~~~a~~~~~rl~ 308 (366)
T PRK10245 235 RDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRG-SDVIGRFGGDEFAVIM--SGT---PAESAITAMSRVH 308 (366)
T ss_pred CCEEEEEEECCcchHHHHhhCchHHHHHHHHHHHHHHHhCCC-CCEEEEEcCcEEEEEe--CCC---CHHHHHHHHHHHH
Confidence 568999999999999999999888888888888888888865 4577788999999886 222 2334455555666
Q ss_pred HHhhhhhhcCCCCCCeEEEEeee
Q psy13820 252 HHSGRFKIRHLPYTPLRLRIGLH 274 (487)
Q Consensus 252 ~~l~~~~~~~~~~~~l~vRIGIh 274 (487)
+.+............+.+.||+.
T Consensus 309 ~~l~~~~~~~~~~i~~s~SiGia 331 (366)
T PRK10245 309 EGLNTLRLPNAPQVTLRISVGVA 331 (366)
T ss_pred HHHhhcccCCCCceEEEEEEEEE
Confidence 66654332221122344445543
No 18
>KOG0192|consensus
Probab=92.82 E-value=0.044 Score=57.45 Aligned_cols=26 Identities=31% Similarity=0.761 Sum_probs=23.4
Q ss_pred CccccCCCCCCCCChhhHHHHhhccc
Q psy13820 1 MRQCWAEPPDMRPDFNEVNDLFKTLN 26 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~~~~~~~ 26 (487)
|++||+.+|+.||+|.+|...+..+.
T Consensus 279 ~~~CW~~dp~~RP~f~ei~~~l~~~~ 304 (362)
T KOG0192|consen 279 MERCWLVDPSRRPSFLEIVSRLESIM 304 (362)
T ss_pred HHHhCCCCCCcCCCHHHHHHHHHHHH
Confidence 57899999999999999999988764
No 19
>PF10851 DUF2652: Protein of unknown function (DUF2652) ; InterPro: IPR020503 This entry contains proteins with no known function.
Probab=92.62 E-value=2.1 Score=37.19 Aligned_cols=98 Identities=22% Similarity=0.194 Sum_probs=60.2
Q ss_pred HHHhhhhcCc-EEEeeeCCEEEEEe-cCCCCCchhHHHHHHHHHHHHHHhhhhhhcC-------CCCCCeEEEEeeeecc
Q psy13820 207 FDATINAYNV-YKVETIGDAYMVVG-GLPVRIPDHADQIATMALDLLHHSGRFKIRH-------LPYTPLRLRIGLHTGP 277 (487)
Q Consensus 207 ~~~ii~~~gG-~~vk~iGD~~mavf-Glp~~~~~~a~~a~~~Al~i~~~l~~~~~~~-------~~~~~l~vRIGIhtG~ 277 (487)
+..+|....| .+-+..||+++.+. |-+... .-..+...|--+..+.+..+.... .....+.+++-+|+|.
T Consensus 5 LE~iI~an~~l~lseiEGDAilFy~~~~~~~~-~v~~q~~~M~~aF~~~~~~~~~~~~C~C~aC~~~~~LsLKfV~H~Ge 83 (116)
T PF10851_consen 5 LEAIIDANLGLKLSEIEGDAILFYKYGKDTSV-EVCRQCERMRRAFHQRREQLKKDRICQCGACAQLINLSLKFVAHYGE 83 (116)
T ss_pred HHHHHccCCCcEEEEecccEEEEEcCCCCccH-HHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhhhcceEEEEEEeee
Confidence 4455666655 56688899998764 222111 123333333333333444443332 2234789999999999
Q ss_pred eEEeEeCCCCCcceeeCcHHHHHHHHHhcCC
Q psy13820 278 CCAGVVGLTMPRYCLFGDTVNTASRLESTGA 308 (487)
Q Consensus 278 Vv~GvvG~~~~~y~v~GdtVN~AsRLes~a~ 308 (487)
+..-.||.-. -++|.+|-+|.||-.+..
T Consensus 84 ~~~~~Vk~~~---kL~G~dVI~aHrlLKN~v 111 (116)
T PF10851_consen 84 VAQQKVKRFC---KLAGKDVIEAHRLLKNDV 111 (116)
T ss_pred eeeeeecccc---hhcCchhhHhHHHHcCCC
Confidence 8877776322 589999999999976653
No 20
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=92.61 E-value=3.2 Score=43.41 Aligned_cols=79 Identities=11% Similarity=-0.002 Sum_probs=56.6
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL 251 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~ 251 (487)
...+++++|+-+|..+....+....-.+|..+-..+...+..+ ..+..+-||.+.++..-. .....+...+-.+.
T Consensus 277 ~~~~l~~i~id~f~~in~~~G~~~gd~~l~~~a~~L~~~~~~~-~~~~R~~~deF~ill~~~----~~~~~~~~~~~~i~ 351 (407)
T PRK09966 277 KTSALLFLDGDNFKYINDTWGHATGDRVLIEIAKRLAEFGGLR-HKAYRLGGDEFAMVLYDV----QSESEVQQICSALT 351 (407)
T ss_pred CceEEEEEECccchHHHhhhchHHHHHHHHHHHHHHHHhCCCC-CEEEEEccceEEEEEcCC----CCHHHHHHHHHHHH
Confidence 4568999999999999999998888888888888887776653 566788899998887321 12223444455555
Q ss_pred HHhh
Q psy13820 252 HHSG 255 (487)
Q Consensus 252 ~~l~ 255 (487)
+.+.
T Consensus 352 ~~~~ 355 (407)
T PRK09966 352 QIFN 355 (407)
T ss_pred HHHh
Confidence 5543
No 21
>cd01949 GGDEF Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.
Probab=92.00 E-value=2 Score=37.14 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=49.0
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEe
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG 230 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavf 230 (487)
...++++.+|.+|..+....+....-.++..+...+.+.+.. ++.+...-++.++++.
T Consensus 30 ~~~~l~~i~i~~~~~i~~~~g~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~~~~f~~l~ 87 (158)
T cd01949 30 RPLALLLIDIDHFKQINDTYGHAAGDEVLKEVAERLRSSLRE-SDLVARLGGDEFAILL 87 (158)
T ss_pred CeEEEEEEEchhhhHHHHhhChHhHHHHHHHHHHHHHHhCCC-CCEEEEecCCeEEEEe
Confidence 457899999999999999999999999999999999888866 4566667778887776
No 22
>PRK09894 diguanylate cyclase; Provisional
Probab=91.37 E-value=13 Score=36.88 Aligned_cols=78 Identities=10% Similarity=0.079 Sum_probs=57.9
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL 251 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~ 251 (487)
..++++++||-+|..+....+...--.+|..+-..+...+... ..+..+-||.++++. |... ...+...+-.|+
T Consensus 157 ~~~~l~~i~id~f~~in~~~G~~~gd~~L~~ia~~l~~~~~~~-~~~~R~~g~~F~ill--~~~~---~~~~~~~~~~l~ 230 (296)
T PRK09894 157 QNLYLALLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDY-ETVYRYGGEEFIICL--KAAT---DEEACRAGERIR 230 (296)
T ss_pred CcEEEEEEECccccHHHHccCcHHHHHHHHHHHHHHHHhCCCC-CEEEEEcCCeEEEEe--CCCC---HHHHHHHHHHHH
Confidence 4578999999999999999998888888888888888887654 467788889888875 3222 234444555565
Q ss_pred HHhh
Q psy13820 252 HHSG 255 (487)
Q Consensus 252 ~~l~ 255 (487)
..+.
T Consensus 231 ~~~~ 234 (296)
T PRK09894 231 QLIA 234 (296)
T ss_pred HHHH
Confidence 5554
No 23
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=91.12 E-value=1.8 Score=42.19 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=53.3
Q ss_pred eeEEEEEEecCCch-hhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEe
Q psy13820 172 REVTIYFSDIVGFT-TISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG 230 (487)
Q Consensus 172 ~~vTVLF~DIvgFT-~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavf 230 (487)
.-++|.-.||.+.| .+....+|-.....++..+..+.+.+.++|+..-=.-||-+|++.
T Consensus 130 g~v~IAH~Dvn~~Tgt~Td~~~~~~t~~~I~~~~~~L~~~l~k~gal~fflGGDN~ma~~ 189 (250)
T COG2429 130 GYVQIAHFDVNDATGTYTDIVSPYDTYTEIQRVYATLMRFLEKIGALLFFLGGDNIMAVC 189 (250)
T ss_pred CceEEEEEeeecchhhhhcccchhHHHHHHHHHHHHHHHHHHhcCcEEEEecCcceEEEC
Confidence 46899999999999 889889999999999999999999999988877666699999996
No 24
>PRK11059 regulatory protein CsrD; Provisional
Probab=91.06 E-value=5.7 Score=44.65 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=69.2
Q ss_pred eEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhc-CcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHH
Q psy13820 173 EVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY-NVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL 251 (487)
Q Consensus 173 ~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~-gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~ 251 (487)
..++++.||-+|..+-...+...--.+|..+-..+...+.++ +..+..+-||.+.++. |.. ....|...|-.|+
T Consensus 259 ~~~ll~idid~fk~iNd~~Gh~~gD~~L~~va~~L~~~~~~~~~~~~aR~ggdeFaill--~~~---~~~~a~~~a~~l~ 333 (640)
T PRK11059 259 HGVVMLIRLPDFDLLQEEWGESQVEELLFELINLLSTFVMRYPGALLARYSRSDFAVLL--PHR---SLKEADSLASQLL 333 (640)
T ss_pred cEEEEEEECchHHHHHHhcChHHHHHHHHHHHHHHHHHHhcCCCCEEEEecCCEEEEEe--CCC---ChHHHHHHHHHHH
Confidence 578999999999999999999888889999999999888876 4567788899998886 322 2345556666676
Q ss_pred HHhhhhhhcCCCCCCeEEEEeeee
Q psy13820 252 HHSGRFKIRHLPYTPLRLRIGLHT 275 (487)
Q Consensus 252 ~~l~~~~~~~~~~~~l~vRIGIht 275 (487)
..+..............+.||+..
T Consensus 334 ~~i~~~~~~~~~~~~~~~siGia~ 357 (640)
T PRK11059 334 KAVDALPPPKMLDRDDFLHIGICA 357 (640)
T ss_pred HHHHhccCCcccCcccEEEEEEEe
Confidence 666543322211223345555543
No 25
>COG2199 c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms]
Probab=90.97 E-value=2.5 Score=38.81 Aligned_cols=79 Identities=11% Similarity=0.102 Sum_probs=60.7
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL 251 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~ 251 (487)
...+++++||-+|..+-...+...--.+|..+...+...+...+ .+..+-||.+.++.... . ...+...|-.+.
T Consensus 50 ~~~~l~~iDiD~Fk~iND~~Gh~~GD~vL~~va~~L~~~~~~~~-~~~R~gGdEF~i~l~~~--~---~~~~~~~~~~l~ 123 (181)
T COG2199 50 EPLALLLLDLDHFKQINDTYGHAAGDEVLREVARRLRSNLREGD-LVARLGGDEFAVLLPGT--S---LEEAARLAERIR 123 (181)
T ss_pred CCeEEEEEeCcCCccccccccchHHHHHHHHHHHHHHHhcCCCC-EEEEeccceeEEEeCCC--C---HHHHHHHHHHHH
Confidence 56899999999999988788888888888888888888888766 78888999999997322 2 445555555565
Q ss_pred HHhhh
Q psy13820 252 HHSGR 256 (487)
Q Consensus 252 ~~l~~ 256 (487)
..+..
T Consensus 124 ~~~~~ 128 (181)
T COG2199 124 AALEE 128 (181)
T ss_pred HHHHc
Confidence 55543
No 26
>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins. The HNOB domain is predicted to function as a haem-dependent sensor for gaseous ligands, and transduce diverse downstream signals in both bacteria and animals.; GO: 0004383 guanylate cyclase activity, 0006182 cGMP biosynthetic process; PDB: 2P04_B 2P08_A 3HLS_E.
Probab=90.88 E-value=0.34 Score=47.28 Aligned_cols=33 Identities=39% Similarity=0.533 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHhHHhhHHHHHHHHhhcCCCcc
Q psy13820 78 NLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVN 110 (487)
Q Consensus 78 ~LE~lVee~~~~L~~ek~~te~ll~~mlp~~v~ 110 (487)
+..+.+++.+++|+.|++++++|||+|+|+.|+
T Consensus 184 ~~~~~Le~~~~~l~~ek~ktd~LL~~mlP~~VA 216 (219)
T PF07701_consen 184 EKSAELEESMRELEEEKKKTDELLYSMLPPSVA 216 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 333555677889999999999999999999874
No 27
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=90.55 E-value=0.27 Score=49.50 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=40.7
Q ss_pred CccccCCCCCCCCChhhHHHHhhcccCCCCCccchhhcccccCCccccccccceeecCCcccchhHHHHHHHHHHHHhHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQGRGRGHLLLLSLRYKNPHLGLRLKSLLYIDSPRKVNFVDTMFQMLEKYSNNLE 80 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~d~m~~mle~y~~~LE 80 (487)
|++||..+|+.||++.+|....-.+. .. .......++...+++.++||
T Consensus 257 i~~~l~~~p~~Rpt~~~il~~~~~~~------------------------------~~--~~~~~~~~~~~~~~~~~~~~ 304 (317)
T cd06635 257 VDSCLQKIPQDRPTSEELLKHMFVLR------------------------------ER--PETVLIDLIQRTKDAVRELD 304 (317)
T ss_pred HHHHccCCcccCcCHHHHHhChhhhc------------------------------cC--cccchhhHHHHHHHHHHHHh
Confidence 46799999999999999865332221 11 11234667788889999999
Q ss_pred HHHHHHHHHh
Q psy13820 81 DLIRERTEQL 90 (487)
Q Consensus 81 ~lVee~~~~L 90 (487)
..+-+++.++
T Consensus 305 ~~~~~~~~~~ 314 (317)
T cd06635 305 NLQYRKMKKL 314 (317)
T ss_pred hhHHHHHHHH
Confidence 9888777654
No 28
>KOG4278|consensus
Probab=90.15 E-value=0.11 Score=57.11 Aligned_cols=29 Identities=38% Similarity=0.842 Sum_probs=26.9
Q ss_pred CccccCCCCCCCCChhhHHHHhhcccCCC
Q psy13820 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQGR 29 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~~~~~~~~~~ 29 (487)
|++||.-+|..||+|.+|-..|.+|.+..
T Consensus 499 MraCW~WsPsDRPsFaeiHqafEtmf~~s 527 (1157)
T KOG4278|consen 499 MRACWNWSPSDRPSFAEIHQAFETMFSSS 527 (1157)
T ss_pred HHHHhcCCcccCccHHHHHHHHHHHhccc
Confidence 78999999999999999999999997664
No 29
>TIGR00254 GGDEF diguanylate cyclase (GGDEF) domain. The GGDEF domain is named for the motif GG[DE]EF shared by many proteins carrying the domain. There is evidence that the domain has diguanylate cyclase activity. Several proteins carrying this domain also carry domains with functions relating to environmental sensing. These include PleD, a response regulator protein involved in the swarmer-to-stalked cell transition in Caulobacter crescentus, and FixL, a heme-containing oxygen sensor protein.
Probab=89.79 E-value=4.5 Score=35.58 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=48.0
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEe
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG 230 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavf 230 (487)
...+++.++|.+|..+....+....-.++..+...+.+.+.. +..+..+-++.+++++
T Consensus 32 ~~~~l~~i~i~~~~~i~~~~G~~~~~~ll~~~a~~l~~~~~~-~~~i~r~~~~~f~il~ 89 (165)
T TIGR00254 32 RSFSVLMIDIDNFKKINDTLGHDVGDEVLREVARILQSSVRG-SDVVGRYGGEEFVVIL 89 (165)
T ss_pred CceEEEEEeccchhHHHHhhChhhHHHHHHHHHHHHHHhcCc-CCEEEEecCCeEEEEe
Confidence 347899999999999999999888888888888888888854 4567777888888876
No 30
>KOG4257|consensus
Probab=88.22 E-value=0.18 Score=55.55 Aligned_cols=27 Identities=37% Similarity=0.867 Sum_probs=23.8
Q ss_pred CccccCCCCCCCCChhhHHHHhhcccC
Q psy13820 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~~~~~~~~ 27 (487)
|.+||+.+|..||+|.+|...+...-+
T Consensus 625 mskcWayeP~kRPrftei~~~lsdv~q 651 (974)
T KOG4257|consen 625 MSKCWAYEPSKRPRFTEIKAILSDVLQ 651 (974)
T ss_pred HHHHhccCcccCCcHHHHHHHHHHHHH
Confidence 578999999999999999998877643
No 31
>KOG1095|consensus
Probab=87.77 E-value=0.17 Score=59.02 Aligned_cols=25 Identities=32% Similarity=0.765 Sum_probs=22.2
Q ss_pred CccccCCCCCCCCChhhHHHHhhcc
Q psy13820 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~~~~~~ 25 (487)
|++||.-+|++||+|..|.+.+..+
T Consensus 937 M~~CW~~~pe~RP~F~~i~~q~~~i 961 (1025)
T KOG1095|consen 937 MLQCWKHDPEDRPSFRTIVEQDPAI 961 (1025)
T ss_pred HHHHccCChhhCccHHHHHhhhhhh
Confidence 7899999999999999998876655
No 32
>TIGR02577 cas_TM1794_Crm2 CRISPR-associated protein, Crm2 family. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.
Probab=87.31 E-value=6.8 Score=42.73 Aligned_cols=118 Identities=14% Similarity=-0.005 Sum_probs=83.5
Q ss_pred eeEEEEEEecCCchhhhccC------------------Cc---hhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEe
Q psy13820 172 REVTIYFSDIVGFTTISAYS------------------TP---FEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG 230 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~------------------~p---~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavf 230 (487)
.-.+|+.+|.-+-..+.... +| ..+...|+.++......+.+++|++|=.-||-++++.
T Consensus 342 ~y~Ail~aDGD~mG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~aL~~f~~~~~~~v~~~~g~~VYaGGDDvlai~ 421 (482)
T TIGR02577 342 PYYAILKADGDRMGKLLRGEIRPEEKERIHPKKVKNLTTPAAHVAFSRALAEFSLKAVKIVVNEHGELVYAGGDDVLALL 421 (482)
T ss_pred ceEEEEEccccchHHHHhCCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCcEEEEc
Confidence 45899999987766665542 23 4677888999988888888899999999999999996
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHhhhhhhcCC-CCCCeEEEEeeeecceEEeEeCCCCCcceeeCcHHHHHHHHHhcCC
Q psy13820 231 GLPVRIPDHADQIATMALDLLHHSGRFKIRHL-PYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGA 308 (487)
Q Consensus 231 Glp~~~~~~a~~a~~~Al~i~~~l~~~~~~~~-~~~~l~vRIGIhtG~Vv~GvvG~~~~~y~v~GdtVN~AsRLes~a~ 308 (487)
.+..|+.+|.++.+...+...... .... +++..|-+++- .-..+...++.|..++..|+
T Consensus 422 --------p~~~al~~a~~l~~~F~~~~~~~~~~~~~----~T~SaGI~iah-------~k~Pl~~~~~~a~ell~~AK 481 (482)
T TIGR02577 422 --------PVDTALDVAKELRKEFRESLEKSLGGERG----PTMSAGLLIVH-------HKEPLYDALELARRLLKRAK 481 (482)
T ss_pred --------cHHHHHHHHHHHHHHHHHHhhcccccCCC----ceEEEEEEEeC-------CCCcHHHHHHHHHHHHHHhc
Confidence 566899999999988776543211 1223 34444433331 11456788889988887664
No 33
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=86.81 E-value=6.8 Score=38.99 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=48.5
Q ss_pred ceeEEEEEEecCCchhhhc-cCCchhHHHHHHHHHHHHHHhhhh-cCcEEEeeeCCEEEEEe
Q psy13820 171 FREVTIYFSDIVGFTTISA-YSTPFEVVDLLNDLYTCFDATINA-YNVYKVETIGDAYMVVG 230 (487)
Q Consensus 171 ~~~vTVLF~DIvgFT~ls~-~~~p~evv~lLn~~~~~~~~ii~~-~gG~~vk~iGD~~mavf 230 (487)
-..|+|.-.||.++|.... ..+|-+..-.++.++..+.+.+.+ ||+---=.-||-+|+++
T Consensus 132 ~~~v~iaH~Di~~~T~~~td~~~~~dt~~~i~~~~~~l~~~~~~~~g~l~ff~GGDN~~~~~ 193 (254)
T PRK02240 132 DGYVQIAHFDINDITGTYTDIENAFDTFLEIEQAYLALMRELRKAHDALSFFVGGDNFMAPC 193 (254)
T ss_pred CCceEEEEEeeecccceeeccCchhHHHHHHHHHHHHHHHHHHHhcCcEEEEecCceEEEEC
Confidence 4679999999999998755 447888888888888777787777 88766656699999996
No 34
>PF06327 DUF1053: Domain of Unknown Function (DUF1053); InterPro: IPR009398 Cyclic AMP (cAMP) is a ubiquitous signalling molecule which mediates many cellular processes by activating cAMP-dependent kinases and also inducing protein-protein interactions. This molecule is produced by the adenylate cyclase (AC) enzyme, using ATP as its substrate. Mammalian adenylate cyclase has nine closely related membrane-bound isoforms (AC1-9) showing significant sequence homology and sharing the same overall structure: two hydrophobic transmembrane domains, and two cytoplasmic domains that are responsible for the catalytic activity. These isoforms differ in both their tissue specificity and their regulation. Regulatory factors known to influence one or more of these isoforms include G proteins, protein kinases, calcium and calmodulin. For more information see [, ]. This entry represents a region of unknown function found in many of these isoforms. It is part of the N-terminal cytoplasmic domain but its presence is not necessary for catalytic activity []. ; GO: 0004016 adenylate cyclase activity, 0009190 cyclic nucleotide biosynthetic process, 0016021 integral to membrane
Probab=86.20 E-value=0.66 Score=39.34 Aligned_cols=44 Identities=27% Similarity=0.391 Sum_probs=35.7
Q ss_pred CCCcchhchHHHHHHhhcchhhh----hhhhcc-------chhhhhhhhhhhccc
Q psy13820 428 GKSQTQKTSQNKILSQILSLDST----MEDATR-------LSAHKKYKYMKQNTF 471 (487)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------~~~~~~~~~~~~~~~ 471 (487)
......++.+|.+|.++|+++|. -+|+.. .+-++||+++.|.-|
T Consensus 47 ~~~~~~eeevn~~l~~aIe~~S~~r~rse~~~~~tL~F~d~~lE~kY~~~~d~~F 101 (101)
T PF06327_consen 47 SEKRSPEEEVNERLMQAIEARSSDRMRSEHINRFTLRFKDKSLEKKYRQMRDPMF 101 (101)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHhHhhhhcceeeEEECChHHHHHHHhccccCC
Confidence 33444688999999999999999 455555 778999999999877
No 35
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=86.02 E-value=7.1 Score=41.94 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=76.6
Q ss_pred ceeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHH
Q psy13820 171 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL 250 (487)
Q Consensus 171 ~~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i 250 (487)
-+..+++++||-.|-.+-...+..--=+.|..+-..+.+.+ +.-..+..+-|+.+++++ | ..+...|+..|-.|
T Consensus 299 ~~pls~~m~DID~FK~iNDt~GH~~GDevLr~vA~~L~~~v-r~~Dl~aRyGGEEF~vvl--p---~t~~~~Ai~iaerI 372 (435)
T COG3706 299 GRPLSLLMLDIDDFKEINDTYGHDVGDEVLRQVARRLRQTV-RGLDLVARYGGEEFAVVL--P---DTDLEAAIAIAERI 372 (435)
T ss_pred CCCeeEEEEecccccccccccCCccHHHHHHHHHHHHHhhc-cccccceecCCeeEEEEe--c---CCCHHHHHHHHHHH
Confidence 36789999999999988776655444444555555555555 334455556667788886 2 23477888888889
Q ss_pred HHHhhhhhhcCCCCC---CeEEEEeeeecceEEeEeCCCCCcceeeCcHHHHHHHHHhcC
Q psy13820 251 LHHSGRFKIRHLPYT---PLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTG 307 (487)
Q Consensus 251 ~~~l~~~~~~~~~~~---~l~vRIGIhtG~Vv~GvvG~~~~~y~v~GdtVN~AsRLes~a 307 (487)
+..+......+.... .+.+.|||.++. |..+.+..-++.|.+.--.|
T Consensus 373 r~~i~~~~~~~~~~~~~~~~TiSiGVa~~~----------p~~~~~~~li~~AD~aLy~A 422 (435)
T COG3706 373 RQKINELPFVHELSREPLEVTISIGVAEGK----------PGEDSIEELLKRADKALYKA 422 (435)
T ss_pred HHHHhcCCccccccccceEEEEEEEEEecC----------CCCCcHHHHHHHHHHHHhHH
Confidence 888887766554332 367778887764 23333444455555544333
No 36
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=84.70 E-value=13 Score=41.60 Aligned_cols=166 Identities=11% Similarity=0.071 Sum_probs=93.5
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL 251 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~ 251 (487)
...+++++||-+|..+-...+.+.--.+|..+-..+...+.. +..+..+-||.+.++... .+....+...|-.+.
T Consensus 261 ~~~~l~~idid~f~~in~~~G~~~gD~lL~~va~~l~~~~~~-~~~~aRl~gdeF~vl~~~----~~~~~~~~~~~~~i~ 335 (660)
T PRK11829 261 DHFHLLVIGIETLQEVSGAMSEAQHQQLLLTIVQRIEQCIDD-SDLLAQLSKTEFAVLARG----TRRSFPAMQLARRIM 335 (660)
T ss_pred CCEEEEEEECCcHHHHHHhhChHHHHHHHHHHHHHHHHhCCC-CcEEEEEeCCEEEEEEcC----CCCHHHHHHHHHHHH
Confidence 357899999999999999999888888888888888877764 356778889999888621 122334555566666
Q ss_pred HHhhhhhhcCCCCCCeEEEEeeeecceEEeEeCCCCCcceeeCcHHHHHHHHHhcCCCCcEEe-cH--------------
Q psy13820 252 HHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHL-SA-------------- 316 (487)
Q Consensus 252 ~~l~~~~~~~~~~~~l~vRIGIhtG~Vv~GvvG~~~~~y~v~GdtVN~AsRLes~a~~g~IlV-Se-------------- 316 (487)
..+..... .....+++.++.|-+....-|. . ...++.. +..|-.-......+++.+ ++
T Consensus 336 ~~~~~~~~----~~~~~~~~~~siGia~~~~~~~-~-~~~ll~~-Ad~Al~~Ak~~g~~~~~~~~~~~~~~~~~~~~~~~ 408 (660)
T PRK11829 336 SQVTQPLF----FDEITLRPSASIGITRYQAQQD-T-AESMMRN-ASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQEN 408 (660)
T ss_pred HHhcCCEE----ECCEEEEEeEEEEEEEeCCCCC-C-HHHHHHH-HHHHHHHHHhcCCCCceeccchhhHHHHHHHHHHH
Confidence 66543111 1123455555555443321110 0 0112211 122222222223334432 21
Q ss_pred HHHHHhhcCCCeeEEEeceEEecCcCcceEEEEec
Q psy13820 317 DTKAKLDQVGDYQLEYRGETELKGKGKMPTYWLLG 351 (487)
Q Consensus 317 ~t~~~L~~~~~f~~~~~G~i~lKGkg~~~ty~l~~ 351 (487)
...+.+.. +.|.+.....+.+++ +.+..|.++-
T Consensus 409 ~l~~al~~-~~~~~~~QPi~~~~~-~~i~~~E~l~ 441 (660)
T PRK11829 409 DLLQAIEN-HDFTLFLQPQWDMKR-QQVIGAEALL 441 (660)
T ss_pred HHHHHHHc-CCEEEEecCcEECCC-CCEEEEEEEE
Confidence 22233333 578888888888875 3455555543
No 37
>PRK13561 putative diguanylate cyclase; Provisional
Probab=83.26 E-value=22 Score=39.79 Aligned_cols=79 Identities=8% Similarity=0.047 Sum_probs=58.6
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL 251 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~ 251 (487)
...++++.||.+|..+....+...--.+|..+-..+...+... ..+...-||.+.++..- .+....+...+-.+.
T Consensus 257 ~~~~l~~idld~f~~in~~~G~~~gD~lL~~ia~~L~~~~~~~-~~~aRl~gdeF~ill~~----~~~~~~~~~~~~~i~ 331 (651)
T PRK13561 257 QTTALMIITCETLRDTAGVLKEAQREILLLTLVEKLKSVLSPR-MVLAQISGYDFAIIANG----VKEPWHAITLGQQVL 331 (651)
T ss_pred CCeEEEEEECCchHHHHHhhChHHHHHHHHHHHHHHHHhCCCC-cEEEEEeCCEEEEEECC----CCCHHHHHHHHHHHH
Confidence 4678999999999999998888888888888888888887654 57788899999888621 122234444555555
Q ss_pred HHhh
Q psy13820 252 HHSG 255 (487)
Q Consensus 252 ~~l~ 255 (487)
..+.
T Consensus 332 ~~~~ 335 (651)
T PRK13561 332 TIIN 335 (651)
T ss_pred HHHc
Confidence 5554
No 38
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=83.21 E-value=90 Score=35.54 Aligned_cols=58 Identities=12% Similarity=0.186 Sum_probs=48.9
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEe
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG 230 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavf 230 (487)
...++++.||-+|..+....+....-.+|..+-..+...+.. ++.+-.+-||.++++.
T Consensus 402 ~~~~l~~i~i~~~~~in~~~G~~~~d~ll~~~a~~l~~~~~~-~~~~~r~~~~eF~il~ 459 (799)
T PRK11359 402 VSPVVYLIGVDHFQDVIDSLGYAWADQALLEVVNRFREKLKP-DQYLCRIEGTQFVLVS 459 (799)
T ss_pred CCEEEEEEECCcHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC-CCEEEEEcCCEEEEEE
Confidence 468899999999999999999888888888888888887754 4667788889888886
No 39
>PRK10060 RNase II stability modulator; Provisional
Probab=81.97 E-value=46 Score=37.65 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=57.3
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL 251 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~ 251 (487)
...++++.||.+|..+....+...--.+|..+-..+...+.. +..+-.+-||.+++++. .. ....+...+-.|+
T Consensus 265 ~~~~ll~idld~fk~iNd~~G~~~gD~lL~~va~~L~~~~~~-~d~vaRlggdeF~ill~--~~---~~~~~~~~~~~i~ 338 (663)
T PRK10060 265 NQVGIVYLDLDNFKKVNDAYGHMFGDQLLQDVSLAILSCLEE-DQTLARLGGDEFLVLAS--HT---SQAALEAMASRIL 338 (663)
T ss_pred CcEEEEEEECcchhHHHHhhCcHHHHHHHHHHHHHHHHhCCC-CCEEEEEcCCEEEEEEc--CC---CHHHHHHHHHHHH
Confidence 467899999999999988888887778888888888877765 45788888999988863 22 2234445556666
Q ss_pred HHhh
Q psy13820 252 HHSG 255 (487)
Q Consensus 252 ~~l~ 255 (487)
+.+.
T Consensus 339 ~~l~ 342 (663)
T PRK10060 339 TRLR 342 (663)
T ss_pred HHcC
Confidence 6554
No 40
>KOG0199|consensus
Probab=80.81 E-value=0.63 Score=52.17 Aligned_cols=21 Identities=38% Similarity=0.982 Sum_probs=18.8
Q ss_pred CccccCCCCCCCCChhhHHHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVNDL 21 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~~ 21 (487)
|++||.-+|++||+|..|+..
T Consensus 348 mk~cWah~paDRptFsair~~ 368 (1039)
T KOG0199|consen 348 MKNCWAHNPADRPTFSAIRED 368 (1039)
T ss_pred HHHhccCCccccccHHHHHHh
Confidence 679999999999999999743
No 41
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=80.29 E-value=0.63 Score=46.72 Aligned_cols=29 Identities=31% Similarity=0.638 Sum_probs=25.1
Q ss_pred CccccCCCCCCCCChhhHHHHhhcccCCC
Q psy13820 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQGR 29 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~~~~~~~~~~ 29 (487)
|.+||..+|+.||++.++...+..+.+..
T Consensus 244 i~~cl~~~p~~Rps~~~l~~~l~~~~~~~ 272 (316)
T cd05108 244 MVKCWMIDADSRPKFRELIIEFSKMARDP 272 (316)
T ss_pred HHHHccCChhhCcCHHHHHHHHHHHHcCC
Confidence 46899999999999999999988876553
No 42
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=79.86 E-value=14 Score=40.55 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=59.0
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL 251 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~ 251 (487)
...+++++||.+|..+-...+.+.--.+|..+...+...+.. ++.+..+-||.++++.. ... ...+...+-.+.
T Consensus 428 ~~~~l~~idid~fk~iNd~~G~~~GD~~L~~~a~~l~~~~~~-~~~~~R~ggdeF~ill~--~~~---~~~~~~~~~~l~ 501 (570)
T PRK15426 428 QPFSVIQLDLDHFKSINDRFGHQAGDRVLSHAAGLISSSLRA-QDVAGRVGGEEFCVVLP--GAS---LAEAAQVAERIR 501 (570)
T ss_pred CcEEEEEEECcccCHhhHhhChHHHHHHHHHHHHHHHHhCCC-CCEEEeecCcEEEEEeC--CCC---HHHHHHHHHHHH
Confidence 457899999999999999999988888999998888888865 45677889999988863 222 234444555565
Q ss_pred HHhh
Q psy13820 252 HHSG 255 (487)
Q Consensus 252 ~~l~ 255 (487)
+.+.
T Consensus 502 ~~~~ 505 (570)
T PRK15426 502 LRIN 505 (570)
T ss_pred HHHh
Confidence 5554
No 43
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=79.12 E-value=18 Score=42.18 Aligned_cols=90 Identities=11% Similarity=0.152 Sum_probs=65.0
Q ss_pred cCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHHHHhhhhhhc
Q psy13820 181 IVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIR 260 (487)
Q Consensus 181 IvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~~~l~~~~~~ 260 (487)
|-+|......++..+-..+...+-..+.+.+..|+|++-++..|.|++++ +...-....+-=.++++.+++.+..
T Consensus 212 iDNyde~~~~~~~~~~s~l~~~i~~~l~~~~~~~~~~~r~~~~dry~~~~-----~~~~l~~~~~~kF~iLd~ir~~~~~ 286 (838)
T PRK14538 212 FDNLEESLIRYDLSEQSQIQGEYLSALSDFIEPYEGYLKQLIDDRFLLLI-----NRQNLDKMIENKFSILDTIRNISHK 286 (838)
T ss_pred eeCHHHHhcccchHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCcEEEEE-----EHHHHHHHHHhCCcHHHHHHHhhcC
Confidence 33444445555556666677777888999999999999999999999998 3445555555556777777755433
Q ss_pred CCCCCCeEEEEeeeecc
Q psy13820 261 HLPYTPLRLRIGLHTGP 277 (487)
Q Consensus 261 ~~~~~~l~vRIGIhtG~ 277 (487)
...++.+.|||..|.
T Consensus 287 --~~~~vTLSiGig~g~ 301 (838)
T PRK14538 287 --YQLKVTLSMGIACWN 301 (838)
T ss_pred --CCCceEEEEEEeCCC
Confidence 346788999998883
No 44
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=78.76 E-value=17 Score=36.21 Aligned_cols=55 Identities=20% Similarity=0.217 Sum_probs=47.9
Q ss_pred EEEEecCCchhhhccCCch---hHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEe
Q psy13820 176 IYFSDIVGFTTISAYSTPF---EVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG 230 (487)
Q Consensus 176 VLF~DIvgFT~ls~~~~p~---evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavf 230 (487)
|..+.|.||-.++...+|. ++..+-..++..+.+.+.++||+..-+-||-+|++.
T Consensus 4 it~iqid~YgpWT~t~~prRE~dlQ~lQsrLya~L~~~~~~~ggl~Ff~RgDN~iavt 61 (254)
T PRK02240 4 ITLIQIDNYGPWTVTPNPRRESDLQALQSRLYADLAQQFGARDGYVFFTRFDNMIAVT 61 (254)
T ss_pred EEEEEecCCCcCcCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCEEEeccCceEEEEc
Confidence 5567889999999988875 566677789999999999999999999999999996
No 45
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=77.40 E-value=1.8 Score=47.06 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=16.8
Q ss_pred CccccCCCCCCCCChhhHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVN 19 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~ 19 (487)
|+.||+.+|+.||++.++.
T Consensus 277 i~~~L~~dP~~RPs~~ell 295 (496)
T PTZ00283 277 VTALLSSDPKRRPSSSKLL 295 (496)
T ss_pred HHHHcccChhhCcCHHHHH
Confidence 4689999999999999884
No 46
>KOG0194|consensus
Probab=76.29 E-value=0.99 Score=48.92 Aligned_cols=29 Identities=28% Similarity=0.823 Sum_probs=25.4
Q ss_pred CccccCCCCCCCCChhhHHHHhhcccCCC
Q psy13820 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQGR 29 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~~~~~~~~~~ 29 (487)
|.+||..+|+.||+|.+|...+..+.+..
T Consensus 396 ~~~c~~~~p~~R~tm~~i~~~l~~~~~~~ 424 (474)
T KOG0194|consen 396 MKQCWKKDPEDRPTMSTIKKKLEALEKKK 424 (474)
T ss_pred HHHhccCChhhccCHHHHHHHHHHHHhcc
Confidence 46899999999999999999999886543
No 47
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=74.96 E-value=31 Score=39.17 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=79.4
Q ss_pred ceeEEEEEEecCCchhhhccC--Cc------hhHHHHHHHHHHH-HHHhhhhc----CcEEEeeeCCEEEEEecCCCCCc
Q psy13820 171 FREVTIYFSDIVGFTTISAYS--TP------FEVVDLLNDLYTC-FDATINAY----NVYKVETIGDAYMVVGGLPVRIP 237 (487)
Q Consensus 171 ~~~vTVLF~DIvgFT~ls~~~--~p------~evv~lLn~~~~~-~~~ii~~~----gG~~vk~iGD~~mavfGlp~~~~ 237 (487)
..-++||-+|+-+--.+.... .+ ..+...|+.+|.. +..+++.+ .+++|=.-||-++++.
T Consensus 520 ~~~lavl~~D~DnlG~~f~~g~~~~~~~s~~~~lS~~l~~fF~~~v~~i~~~~~~~~~~~~VYaGGDDv~~ig------- 592 (648)
T TIGR02578 520 HKKLGVLKMDVDNLGEIFASGLKRPTRISRLATLSRQLELFFKLYLLHLAEDKRNKRNLYVVYSGGDDLFLIG------- 592 (648)
T ss_pred CceEEEEEccccCHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCEEEEEEccccEEEEc-------
Confidence 357899999998766665432 12 3566777776654 55667666 7888877899999985
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhcCCCCCCeEEEEeeeecceEEeEeCCCCCcceeeCcHHHHHHHHHhcCC
Q psy13820 238 DHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGA 308 (487)
Q Consensus 238 ~~a~~a~~~Al~i~~~l~~~~~~~~~~~~l~vRIGIhtG~Vv~GvvG~~~~~y~v~GdtVN~AsRLes~a~ 308 (487)
+...++.+|.+|++.+.++... ..+.+.+||...+. + ..+......|.+++..|+
T Consensus 593 -~~~~~l~~A~~i~~~F~~~~~~----~~~TlSaGi~i~~~-------k----~Pl~~~~~~aee~l~~AK 647 (648)
T TIGR02578 593 -PWNAVLELASDIREYFEKFTCR----DKITISAGVVVVSP-------K----YPVYRAARIAEELLEAAK 647 (648)
T ss_pred -cHHHHHHHHHHHHHHHHHHhCC----CCeeEEEEEEECCC-------C----CCHHHHHHHHHHHHHHhc
Confidence 4568999999999998876421 34566666554431 2 245677888888887765
No 48
>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=74.29 E-value=1.2 Score=44.40 Aligned_cols=28 Identities=32% Similarity=0.745 Sum_probs=24.1
Q ss_pred CccccCCCCCCCCChhhHHHHhhcccCC
Q psy13820 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQG 28 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~~~~~~~~~ 28 (487)
|..||..+|+.||++.++...+..+...
T Consensus 244 i~~c~~~~p~~Rp~~~~l~~~l~~~~~~ 271 (303)
T cd05110 244 MVKCWMIDADSRPKFKELAAEFSRMARD 271 (303)
T ss_pred HHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 3689999999999999999988887544
No 49
>KOG4171|consensus
Probab=73.44 E-value=4 Score=45.72 Aligned_cols=30 Identities=47% Similarity=0.673 Sum_probs=25.7
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHhhcCCCcc
Q psy13820 81 DLIRERTEQLDIEKKKTEQLLNRMLPRKVN 110 (487)
Q Consensus 81 ~lVee~~~~L~~ek~~te~ll~~mlp~~v~ 110 (487)
+..|+-+++|++||+++..||++|+|+.|+
T Consensus 397 ~~Le~~~~~Le~EKkkTd~LLy~mlP~~VA 426 (671)
T KOG4171|consen 397 EKLEKMTRELEEEKKKTDTLLYSMLPRSVA 426 (671)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCHHHH
Confidence 445566788999999999999999999875
No 50
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=72.92 E-value=1.6 Score=44.24 Aligned_cols=28 Identities=29% Similarity=0.700 Sum_probs=24.3
Q ss_pred CccccCCCCCCCCChhhHHHHhhcccCC
Q psy13820 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQG 28 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~~~~~~~~~ 28 (487)
|++||+.+|+.||++.++...|..+...
T Consensus 269 i~~cl~~~p~~Rps~~ell~~l~~~~~~ 296 (334)
T cd05100 269 MRECWHAVPSQRPTFKQLVEDLDRVLTV 296 (334)
T ss_pred HHHHcccChhhCcCHHHHHHHHHHHhhh
Confidence 4689999999999999999999877533
No 51
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=68.07 E-value=1.7 Score=43.39 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=17.1
Q ss_pred CccccCCCCCCCCChhhHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVN 19 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~ 19 (487)
|++||..+|+.||++.+|.
T Consensus 247 i~~~l~~~p~~Rp~~~~il 265 (307)
T cd06607 247 VDSCLQKIPQDRPSSEELL 265 (307)
T ss_pred HHHHhcCChhhCcCHHHHh
Confidence 4689999999999999984
No 52
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=67.06 E-value=65 Score=35.98 Aligned_cols=122 Identities=10% Similarity=0.140 Sum_probs=76.1
Q ss_pred EEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHHHHhhhh
Q psy13820 178 FSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRF 257 (487)
Q Consensus 178 F~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~~~l~~~ 257 (487)
+.-+-+|..+...++..+...+-.-.-+.+.+...+|+.+.-++.+|.++++.. ..--.....-=..+++.+++.
T Consensus 179 ~i~vDNyDe~t~~~~d~~rs~inS~V~s~l~~~a~~~~if~rr~s~drf~~~~~-----~~~L~~l~~~kF~iLd~~RE~ 253 (655)
T COG3887 179 IISVDNYDEVTQGLSDSDRSQINSFVTSFLEEWATEYNIFLRRYSSDRFYAFTN-----YKILEKLEEDKFSILDEFREE 253 (655)
T ss_pred EEEeccHHHHhcCCChhhHHHHHHHHHHHHHHHHHHhhhhheeecCCeEEEEec-----HHHHHHHHHhhhHHHHHHHHH
Confidence 334446666666555444444444455666777888999999999999999972 233444555556666666654
Q ss_pred hhcCCCCCCeEEEEeeeecceEEeEeCCCCCcceeeCcHHHHHHHHHhcCCCCcEEecH
Q psy13820 258 KIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSA 316 (487)
Q Consensus 258 ~~~~~~~~~l~vRIGIhtG~Vv~GvvG~~~~~y~v~GdtVN~AsRLes~a~~g~IlVSe 316 (487)
.. ....|+.+.||+..|.- ...-.|+....+-++...-.+.||.|=+
T Consensus 254 s~--~~~ipLTLSiGvg~g~~----------~~~elg~vA~~~L~lAlgRGGDQVvIke 300 (655)
T COG3887 254 SS--QKNIPLTLSIGVGYGEN----------NLIELGEVAQSNLDLALGRGGDQVVIKE 300 (655)
T ss_pred hh--ccCcceEEEEEeccCcc----------cHHHHHHHHHHhHHHHhccCCceEEEEc
Confidence 33 23568999999998852 2234566555555554333333676643
No 53
>PF11294 DUF3095: Protein of unknown function (DUF3095); InterPro: IPR021445 Some members in this bacterial family of proteins are annotated as adenylyl cyclase however this cannot be confirmed. Currently no function is known.
Probab=65.85 E-value=1.1e+02 Score=32.32 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=81.9
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEee--eCCEEEEEecCCCCCchhHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVET--IGDAYMVVGGLPVRIPDHADQIATMALD 249 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~--iGD~~mavfGlp~~~~~~a~~a~~~Al~ 249 (487)
..=.|..+||+++|...+. +--.-|++... ..+..+++..++.-+-| -|||-.++- |. +....++-||.
T Consensus 25 ddW~v~vaDIv~ST~AIa~-GrYK~VNm~Ga--~~IaAv~N~~~~~~~PFvFGGDGA~~~v--Pp----~~~~~ar~aLa 95 (373)
T PF11294_consen 25 DDWFVGVADIVNSTKAIAA-GRYKDVNMAGA--AVIAAVLNALGGRDFPFVFGGDGATFAV--PP----SLLEAAREALA 95 (373)
T ss_pred CCcEEEEeehhccHHHHHc-CCcccchHHHH--HHHHHHHhcccCCCCCeEecCCCeEEec--CH----HHHHHHHHHHH
Confidence 4457999999999988663 22222233222 12222333335544444 499987774 32 22222222332
Q ss_pred HHHHhhhhhhcCCCCCCeEEEEeeee--------cceEEeEeCCCCC-ccee-eCcHHHHHHHHHhcCCCCcEEecHHHH
Q psy13820 250 LLHHSGRFKIRHLPYTPLRLRIGLHT--------GPCCAGVVGLTMP-RYCL-FGDTVNTASRLESTGAPWRIHLSADTK 319 (487)
Q Consensus 250 i~~~l~~~~~~~~~~~~l~vRIGIht--------G~Vv~GvvG~~~~-~y~v-~GdtVN~AsRLes~a~~g~IlVSe~t~ 319 (487)
- ++.+... .-.+.+|+|+-- .+|.+.-+..... .|.+ .|.....|.+... +....|......
T Consensus 96 ~---~~~~~~~---~f~l~LRvg~VPV~~Ir~~G~dvrvAr~~~S~~~~~amf~GgGL~~AE~~mK-~~~~~i~~~~~~- 167 (373)
T PF11294_consen 96 A---VRAWVKE---EFDLELRVGLVPVSDIRAEGLDVRVARFAASPNVSYAMFSGGGLAWAEALMK-AGRYLIPPAPPG- 167 (373)
T ss_pred H---HHHHHHH---hcCCceeEeeeEHHHHHhCCCeEEEEEEccCCCceEEEEecCcHHHHHHHHh-cccccCCCCCCC-
Confidence 2 2222111 235788888643 2455555554433 5544 4999999999877 333344332222
Q ss_pred HHhhcCCCeeEEEeceEEecCcCcceEEEEec
Q psy13820 320 AKLDQVGDYQLEYRGETELKGKGKMPTYWLLG 351 (487)
Q Consensus 320 ~~L~~~~~f~~~~~G~i~lKGkg~~~ty~l~~ 351 (487)
...+..++.|+.- ++ -.-.|++.+..+..
T Consensus 168 -~~pdLtGlsCRW~-~I-ps~~g~ilSliV~p 196 (373)
T PF11294_consen 168 -TRPDLTGLSCRWN-PI-PSRNGEILSLIVKP 196 (373)
T ss_pred -CCCCCCCceeeCC-cC-CCCCCeEEEEEEEe
Confidence 2234455666543 22 23346666666654
No 54
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=65.70 E-value=7.3 Score=38.89 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.1
Q ss_pred CccccCCCCCCCCChhhHHHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVNDL 21 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~~ 21 (487)
|++||..+|++||++.++...
T Consensus 247 i~~cl~~~P~~Rp~~~~ll~~ 267 (308)
T cd06634 247 VDSCLQKIPQDRPTSEVLLKH 267 (308)
T ss_pred HHHHhhCCcccCCCHHHHhhC
Confidence 468999999999999988554
No 55
>PRK09776 putative diguanylate cyclase; Provisional
Probab=60.74 E-value=62 Score=38.41 Aligned_cols=79 Identities=13% Similarity=0.128 Sum_probs=57.8
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL 251 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~ 251 (487)
...+++++||-+|..+....+...--.+|..+-..+...+... ..+..+-||.+.++. |... ...+...+-.++
T Consensus 695 ~~~~l~~idid~fk~in~~~G~~~gd~~L~~~a~~l~~~~~~~-~~~~R~~gdeF~vl~--~~~~---~~~~~~~~~~l~ 768 (1092)
T PRK09776 695 QRHALVFIDLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSS-DVLARLGGDEFGLLL--PDCN---VESARFIATRII 768 (1092)
T ss_pred CcEEEEEEECcchHHHHHhhChhhHHHHHHHHHHHHHHhCCCc-CEEEEecCcEEEEEe--CCCC---hHHHHHHHHHHH
Confidence 4689999999999999998888888888888888888777643 467788899998886 3222 233444555566
Q ss_pred HHhhh
Q psy13820 252 HHSGR 256 (487)
Q Consensus 252 ~~l~~ 256 (487)
+.+..
T Consensus 769 ~~~~~ 773 (1092)
T PRK09776 769 SAIND 773 (1092)
T ss_pred HHHhh
Confidence 55543
No 56
>KOG1025|consensus
Probab=60.44 E-value=3.6 Score=47.26 Aligned_cols=29 Identities=31% Similarity=0.738 Sum_probs=25.8
Q ss_pred CccccCCCCCCCCChhhHHHHhhcccCCC
Q psy13820 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQGR 29 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~~~~~~~~~~ 29 (487)
|-.||.++++.||+|++....|+.|.+.-
T Consensus 933 mvkCwmid~~~rp~fkel~~~fs~~ardp 961 (1177)
T KOG1025|consen 933 MVKCWMIDADSRPTFKELAEEFSRMARDP 961 (1177)
T ss_pred HHHHhccCcccCccHHHHHHHHHHHhcCc
Confidence 45799999999999999999999997653
No 57
>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and
Probab=51.57 E-value=5.3 Score=40.07 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=17.4
Q ss_pred CccccCCCCCCCCChhhHHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVND 20 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~ 20 (487)
|++||..+|++||++.++..
T Consensus 269 i~~~l~~~P~~Rpt~~~ll~ 288 (330)
T cd07834 269 LEKMLVFDPKKRITADEALA 288 (330)
T ss_pred HHHHccCChhhCCCHHHHHh
Confidence 46899999999999998853
No 58
>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase
Probab=50.33 E-value=5.1 Score=40.58 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=17.5
Q ss_pred CccccCCCCCCCCChhhHHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVND 20 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~ 20 (487)
|++||+.+|++||++.++..
T Consensus 272 i~~~l~~dP~~Rpt~~e~l~ 291 (336)
T cd07849 272 LDKMLTFNPHKRITVEEALA 291 (336)
T ss_pred HHHHcCCChhhCcCHHHHhc
Confidence 46899999999999998844
No 59
>PRK09581 pleD response regulator PleD; Reviewed
Probab=49.91 E-value=1.7e+02 Score=30.26 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=39.2
Q ss_pred eEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEe
Q psy13820 173 EVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG 230 (487)
Q Consensus 173 ~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavf 230 (487)
..++++.++.+|..+....+....-.++..+...+...+..+ +.+....|+.++++.
T Consensus 323 ~~~~l~i~i~~~~~i~~~~g~~~~~~~l~~i~~~l~~~~~~~-~~~~r~~~~~f~ill 379 (457)
T PRK09581 323 PLSLMMIDIDHFKKVNDTYGHDAGDEVLREFAKRLRNNIRGT-DLIARYGGEEFVVVM 379 (457)
T ss_pred cEEEEEEecchhhHhHHhhChhhHHHHHHHHHHHHHhhCCCC-cEEEEecCCEEEEEe
Confidence 357889999988888766665554455666666666666553 455666678888776
No 60
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=49.19 E-value=66 Score=31.32 Aligned_cols=82 Identities=23% Similarity=0.272 Sum_probs=50.1
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhc----CcEEEeeeCCEEEEEecCCCCCchhHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY----NVYKVETIGDAYMVVGGLPVRIPDHADQIATMA 247 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~----gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~A 247 (487)
+.+||+.-.+.+| .-+++|+..+++-+...+.+.+... .|..++++||- ..+| +....+++-+
T Consensus 40 ~~lTvYaFS~eN~-----~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~~~irvr~iGd~----~~Lp----~~~~~~i~~~ 106 (223)
T PF01255_consen 40 KYLTVYAFSTENW-----KRPKEEVDALMDLFERYLRELIDELNFHKNGIRVRVIGDL----SLLP----EELQKAIAEA 106 (223)
T ss_dssp SEEEEEEEETTGG-----GS-HHHHHHHHHHHHHHHHHHHHHHH--HTTEEEEEES-G----GGS-----HHHHHHHHHH
T ss_pred CEEEEEEecchhh-----cCCHHHHHHHHHHHHHHHHHHhhhcchhhcCeeEEEEecc----CcCC----HHHHHHHHHH
Confidence 6889998888777 4567788777777777766666532 58899999997 4455 2333333222
Q ss_pred HHHHHHhhhhhhcCCCCCCeEEEEeeeec
Q psy13820 248 LDLLHHSGRFKIRHLPYTPLRLRIGLHTG 276 (487)
Q Consensus 248 l~i~~~l~~~~~~~~~~~~l~vRIGIhtG 276 (487)
-+. ......+.+-|.+++|
T Consensus 107 e~~----------T~~n~~l~Lnia~~Yg 125 (223)
T PF01255_consen 107 EEK----------TKNNTGLTLNIAINYG 125 (223)
T ss_dssp HHH----------HTTSSSEEEEEEECE-
T ss_pred HHh----------hccCcceeEEEEecCC
Confidence 221 1123467888888876
No 61
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=46.26 E-value=1e+02 Score=31.13 Aligned_cols=83 Identities=22% Similarity=0.186 Sum_probs=53.0
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhh----hcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATIN----AYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMA 247 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~----~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~A 247 (487)
+.+||+.-.+.+|. -+++|+-.+++-+...+.+.+. .-.|..++++||.- .+| +....++.-+
T Consensus 87 k~lTvYaFS~EN~~-----R~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~irir~iGd~~----~Lp----~~l~~~i~~~ 153 (275)
T PRK14835 87 PTVTIWVFSTDNFS-----RSPAEVETLMNLFEREARRMAVDPRIHANRVRVRAIGRHD----GFP----PKVLEALEEL 153 (275)
T ss_pred CEEEEEEEEccccC-----CCHHHHHHHHHHHHHHHHHHhchhhhhhCCeEEEEecChh----hCC----HHHHHHHHHH
Confidence 68999988888883 5677888888877777766543 12488999999953 355 2333333322
Q ss_pred HHHHHHhhhhhhcCCCCCCeEEEEeeeecc
Q psy13820 248 LDLLHHSGRFKIRHLPYTPLRLRIGLHTGP 277 (487)
Q Consensus 248 l~i~~~l~~~~~~~~~~~~l~vRIGIhtG~ 277 (487)
.+. ......+.+.|.+++|-
T Consensus 154 e~~----------T~~~~~~~Lnia~~Ygg 173 (275)
T PRK14835 154 EER----------TEGHEGMLLNIAVGYGG 173 (275)
T ss_pred HHH----------hcCCCCeEEEEEeccCC
Confidence 211 12234577888888873
No 62
>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul
Probab=45.50 E-value=7.7 Score=39.21 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=17.5
Q ss_pred CccccCCCCCCCCChhhHHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVND 20 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~ 20 (487)
|..||..+|++||++.++..
T Consensus 275 i~~~l~~~P~~Rps~~~il~ 294 (337)
T cd07852 275 LKKLLVFNPNKRLTAEEALE 294 (337)
T ss_pred HHHhccCCcccccCHHHHhh
Confidence 35799999999999998865
No 63
>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati
Probab=45.46 E-value=6.6 Score=39.81 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=17.4
Q ss_pred CccccCCCCCCCCChhhHHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVND 20 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~ 20 (487)
|++||..+|++||++.++..
T Consensus 271 i~~~l~~~P~~Rps~~ell~ 290 (337)
T cd07858 271 LEKMLVFDPSKRITVEEALA 290 (337)
T ss_pred HHHHhcCChhhccCHHHHHc
Confidence 46899999999999998854
No 64
>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos
Probab=44.63 E-value=8 Score=38.81 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=17.3
Q ss_pred CccccCCCCCCCCChhhHHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVND 20 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~ 20 (487)
|+.||..+|+.||++.++..
T Consensus 270 i~~~l~~~P~~Rpt~~e~l~ 289 (338)
T cd07859 270 LERLLAFDPKDRPTAEEALA 289 (338)
T ss_pred HHHHcCcCcccCCCHHHHhc
Confidence 46899999999999998853
No 65
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=43.23 E-value=7.7 Score=38.86 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=16.7
Q ss_pred CccccCCCCCCCCChhhHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVN 19 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~ 19 (487)
|++||..+|++||++.++.
T Consensus 253 i~~~l~~~P~~Rp~~~~~l 271 (313)
T cd06633 253 VDYCLQKIPQERPASAELL 271 (313)
T ss_pred HHHHccCChhhCcCHHHHh
Confidence 4679999999999999883
No 66
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=43.22 E-value=2.4e+02 Score=28.12 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=55.0
Q ss_pred EEecCCchhhhccCCch---hHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEe-cCCCCCchhHHHHHHHHHHHHHH
Q psy13820 178 FSDIVGFTTISAYSTPF---EVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG-GLPVRIPDHADQIATMALDLLHH 253 (487)
Q Consensus 178 F~DIvgFT~ls~~~~p~---evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavf-Glp~~~~~~a~~a~~~Al~i~~~ 253 (487)
.+.|.||-.+++..+|. .+..+-..+|..+.+.+..+||++.-+-=|-++++. |++. ++| ..+++.
T Consensus 3 ~i~l~~Y~eWTetlg~~RE~~iQ~lQa~l~~~l~~~~~~~~g~~~~~R~D~~iavtnGi~~--~~~--------~~i~~~ 72 (246)
T PF05165_consen 3 LIQLDNYREWTETLGPDREWDIQTLQARLYADLQQFFSSRGGLVFPTRYDNMIAVTNGIDL--EDH--------ARIQES 72 (246)
T ss_dssp EEEETTHHHHCCSSS---HHHHHHHHHHHHHHHHHHHHTTT-EEE-TTSSEEEEE-TT--H--HHH--------HHHHHH
T ss_pred eEEecCCccCcCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCEEeeeeeeeEEEeecCCCH--HHH--------HHHHHH
Confidence 35788999999988876 466677779999999999999999999999999986 2221 111 134444
Q ss_pred hhhhhhcCCCCCCeEEEEeeeecc
Q psy13820 254 SGRFKIRHLPYTPLRLRIGLHTGP 277 (487)
Q Consensus 254 l~~~~~~~~~~~~l~vRIGIhtG~ 277 (487)
+++. .|+.+++||.+|.
T Consensus 73 i~~~-------~Pv~vs~~ig~g~ 89 (246)
T PF05165_consen 73 IRNR-------YPVTVSMCIGYGE 89 (246)
T ss_dssp HHHH-------SSS-EEEEEEEES
T ss_pred HHhc-------CCceEEEEEecCC
Confidence 4432 2567777777775
No 67
>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK
Probab=42.73 E-value=8.4 Score=39.20 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=16.8
Q ss_pred CccccCCCCCCCCChhhHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVN 19 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~ 19 (487)
|++||+.+|++|||+.+|.
T Consensus 278 i~~~l~~~P~~Rpt~~ell 296 (343)
T cd07851 278 LEKMLVLDPDKRITAAEAL 296 (343)
T ss_pred HHHhCCCChhhCCCHHHHh
Confidence 4679999999999999883
No 68
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=42.57 E-value=1.3e+02 Score=30.06 Aligned_cols=83 Identities=23% Similarity=0.259 Sum_probs=50.2
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhh--cCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINA--YNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALD 249 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~--~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~ 249 (487)
+.|||+.-.+.+|. -+++|+-.+++-+...+.+.+.. -.|.+++++||. ..+|. ...+++.-+.+
T Consensus 60 ~~lTvYaFS~eN~~-----R~~~EV~~Lm~L~~~~l~~~~~~~~~~~iri~viGd~----~~Lp~----~l~~~i~~~e~ 126 (249)
T PRK14834 60 GYLTLFAFSSENWS-----RPASEVSDLFGLLRLFIRRDLAELHRNGVRVRVIGER----AGLEA----DICALLNEAEE 126 (249)
T ss_pred CEEEEEEEeccccC-----CCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEcCh----hhCCH----HHHHHHHHHHH
Confidence 68999988888884 55667776666666555554433 247889999994 33452 22222222222
Q ss_pred HHHHhhhhhhcCCCCCCeEEEEeeeecc
Q psy13820 250 LLHHSGRFKIRHLPYTPLRLRIGLHTGP 277 (487)
Q Consensus 250 i~~~l~~~~~~~~~~~~l~vRIGIhtG~ 277 (487)
. ......+.+.|.+++|.
T Consensus 127 ~----------T~~~~~~~lnla~~Ygg 144 (249)
T PRK14834 127 L----------TRNNTGLNLVIAFNYGS 144 (249)
T ss_pred h----------hccCCceEEEEEeccCC
Confidence 1 12244678888888873
No 69
>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13
Probab=42.11 E-value=8.5 Score=39.15 Aligned_cols=19 Identities=16% Similarity=0.044 Sum_probs=16.9
Q ss_pred CccccCCCCCCCCChhhHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVN 19 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~ 19 (487)
|++||..+|++||++.++.
T Consensus 277 i~~~l~~dP~~R~~~~e~l 295 (342)
T cd07879 277 LEKMLELDVDKRLTATEAL 295 (342)
T ss_pred HHHHcCCChhhCcCHHHHh
Confidence 4689999999999999884
No 70
>KOG0196|consensus
Probab=41.46 E-value=7.7 Score=44.40 Aligned_cols=28 Identities=25% Similarity=0.662 Sum_probs=25.1
Q ss_pred CccccCCCCCCCCChhhHHHHhhcccCC
Q psy13820 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQG 28 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~~~~~~~~~ 28 (487)
|.+||+.+=.+||.|.+|...|.+|.+.
T Consensus 867 MldCWqkdR~~RP~F~qiV~~lDklIrn 894 (996)
T KOG0196|consen 867 MLDCWQKDRNRRPKFAQIVSTLDKLIRN 894 (996)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHhcC
Confidence 6799999999999999999999888544
No 71
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=40.62 E-value=1.1e+02 Score=30.31 Aligned_cols=83 Identities=20% Similarity=0.186 Sum_probs=51.4
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhc--CcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY--NVYKVETIGDAYMVVGGLPVRIPDHADQIATMALD 249 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~--gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~ 249 (487)
+.+||+.-.+.+| +-+++|+-.+++-+...+.+.+... .|..++++||-= .+| +...++++-+.+
T Consensus 55 ~~lTvYaFS~EN~-----~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~----~Lp----~~l~~~i~~~e~ 121 (239)
T PRK14839 55 GTLTLYAFSSDNW-----RRPAAEVGGLMRLLRAYLRNETERLARNGVRLTVIGRRD----RLP----DGIPEAIARAEA 121 (239)
T ss_pred CEEEEEEechhhc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChh----hCC----HHHHHHHHHHHH
Confidence 6899998888877 3567787777776666555544432 477889999963 345 233333332222
Q ss_pred HHHHhhhhhhcCCCCCCeEEEEeeeecc
Q psy13820 250 LLHHSGRFKIRHLPYTPLRLRIGLHTGP 277 (487)
Q Consensus 250 i~~~l~~~~~~~~~~~~l~vRIGIhtG~ 277 (487)
. ......+.+-|.+++|.
T Consensus 122 ~----------T~~n~~~~Lnia~~Ygg 139 (239)
T PRK14839 122 A----------TAGGDRLHLRIAVDYSA 139 (239)
T ss_pred H----------hcCCCceEEEEEecCCC
Confidence 2 12234578888888874
No 72
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=40.43 E-value=1.4e+02 Score=29.85 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=53.3
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL 251 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~ 251 (487)
+.+||+...+.+|. -+++|+-.+++-+...+.+.+. .++..++++||--+ +| +...+++..+-+.
T Consensus 73 k~lTvYaFS~eN~~-----R~~~Ev~~Lm~L~~~~l~~~~~-~~~irv~~iG~~~~----lp----~~~~~~~~~~e~~- 137 (256)
T PRK14828 73 NVVTLYLLSTDNLG-----RPSEELNPLLDIIEDVVRQLAP-DGRWRVRHVGSLDL----LP----APSANRLKEAEEA- 137 (256)
T ss_pred CEEEEEEEEhhhcC-----CCHHHHHHHHHHHHHHHHHHHH-hCCeEEEEECChhh----CC----HHHHHHHHHHHHh-
Confidence 68999888887773 5677888888888778877764 46778899998643 44 3333333322211
Q ss_pred HHhhhhhhcCCCCCCeEEEEeeeecc
Q psy13820 252 HHSGRFKIRHLPYTPLRLRIGLHTGP 277 (487)
Q Consensus 252 ~~l~~~~~~~~~~~~l~vRIGIhtG~ 277 (487)
......+.+-|.+++|-
T Consensus 138 ---------T~~~~~~~Lnia~~Ygg 154 (256)
T PRK14828 138 ---------TVGNDGIKVNVAVGYGG 154 (256)
T ss_pred ---------hcCCCCcEEEEEecCCC
Confidence 12234577888887763
No 73
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=38.92 E-value=1.1e+02 Score=30.27 Aligned_cols=83 Identities=18% Similarity=0.191 Sum_probs=52.7
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL 251 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~ 251 (487)
+.||++.-.+.+| +-+++|+-.+++-+...+.+..-.-.|..++++||-=+ +| +....++..+.+..
T Consensus 56 ~~lT~YaFS~EN~-----kR~~~Ev~~Lm~l~~~~l~~~~~~~~~irir~iG~~~~----Lp----~~l~~~i~~~e~~T 122 (242)
T PRK14838 56 KFLTLYTFSTENW-----NRPSDEVAALMSLLLDSIEEETFMKNNIRFRIIGDIAK----LP----EEVQERLNECEEHT 122 (242)
T ss_pred CEEEEEeechhhc-----CCCHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeChhh----CC----HHHHHHHHHHHHHh
Confidence 6899998888877 35677888888877777765433335788999998643 45 33333333322221
Q ss_pred HHhhhhhhcCCCCCCeEEEEeeeecc
Q psy13820 252 HHSGRFKIRHLPYTPLRLRIGLHTGP 277 (487)
Q Consensus 252 ~~l~~~~~~~~~~~~l~vRIGIhtG~ 277 (487)
.....+.+-|.+++|.
T Consensus 123 ----------~~~~~~~lnia~~Ygg 138 (242)
T PRK14838 123 ----------AKNTGMCLVLALSYSS 138 (242)
T ss_pred ----------cCCCceEEEEeecCCC
Confidence 1234567888888874
No 74
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=38.23 E-value=1.2e+02 Score=29.98 Aligned_cols=83 Identities=16% Similarity=0.180 Sum_probs=51.4
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhh--cCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINA--YNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALD 249 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~--~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~ 249 (487)
+.+||+.-.+.+|. -+++|+-.+++-+...+++.... -.|.+++++||-- .+|. ...+++.-+.+
T Consensus 49 k~lTvYaFS~eN~~-----R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~~----~Lp~----~~~~~i~~~e~ 115 (233)
T PRK14841 49 KYLTAFSFSTENWK-----RPKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRKE----GLPE----KVLKKWQEVEE 115 (233)
T ss_pred CEEEEEeeeHhhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeChh----hCCH----HHHHHHHHHHH
Confidence 68999988888773 56777777777776666554432 2478899999853 3552 33333222222
Q ss_pred HHHHhhhhhhcCCCCCCeEEEEeeeecc
Q psy13820 250 LLHHSGRFKIRHLPYTPLRLRIGLHTGP 277 (487)
Q Consensus 250 i~~~l~~~~~~~~~~~~l~vRIGIhtG~ 277 (487)
. . .....+.+.|.+++|-
T Consensus 116 ~---T-------~~~~~~~Lnia~~Ygg 133 (233)
T PRK14841 116 K---T-------KEFDRMTLVIAFNYGG 133 (233)
T ss_pred H---h-------cCCCCcEEEEEecCCC
Confidence 1 1 1234577888888874
No 75
>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5. Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the
Probab=36.96 E-value=12 Score=37.88 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=17.1
Q ss_pred CccccCCCCCCCCChhhHHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVND 20 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~ 20 (487)
|++||..+|++||++.++..
T Consensus 274 i~~~l~~~P~~Rpt~~~~l~ 293 (334)
T cd07855 274 LSQMLQFDPEERITVEQALQ 293 (334)
T ss_pred HHHHccCChhhCcCHHHHHh
Confidence 46899999999999988743
No 76
>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi
Probab=36.78 E-value=12 Score=38.14 Aligned_cols=19 Identities=21% Similarity=0.058 Sum_probs=16.9
Q ss_pred CccccCCCCCCCCChhhHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVN 19 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~ 19 (487)
|++||..+|++||++.++.
T Consensus 280 i~~~L~~dP~~R~t~~ell 298 (342)
T cd07854 280 LEQILTFNPMDRLTAEEAL 298 (342)
T ss_pred HHHHhCCCchhccCHHHHh
Confidence 4689999999999999884
No 77
>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U
Probab=36.03 E-value=13 Score=37.76 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=16.3
Q ss_pred CccccCCCCCCCCChhhH
Q psy13820 1 MRQCWAEPPDMRPDFNEV 18 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~ 18 (487)
|++||..+|++||++.++
T Consensus 268 i~~~l~~~P~~R~t~~el 285 (328)
T cd07856 268 LEKMLVFDPQKRISAAEA 285 (328)
T ss_pred HHHHcCCChhhCCCHHHH
Confidence 468999999999999887
No 78
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=35.34 E-value=1.5e+02 Score=29.17 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=50.2
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhh--cCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINA--YNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALD 249 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~--~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~ 249 (487)
+.+|++.-.+.+|. -+++||-.+++-+...+.+.... -.|..++++||-= .+| +...+++.-+.+
T Consensus 45 ~~lT~yaFStEN~~-----Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~----~Lp----~~~~~~i~~~e~ 111 (226)
T TIGR00055 45 ECLTLYAFSTENWK-----RPKEEVDFLMELFEKKLDREVKELHRYNVRIRIIGDLS----LLS----KELQEKIKKAEE 111 (226)
T ss_pred CEEEEEEeehhhcC-----cCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChh----hCC----HHHHHHHHHHHH
Confidence 68899988888874 45667766666665555543332 2477899999954 355 233333322222
Q ss_pred HHHHhhhhhhcCCCCCCeEEEEeeeecc
Q psy13820 250 LLHHSGRFKIRHLPYTPLRLRIGLHTGP 277 (487)
Q Consensus 250 i~~~l~~~~~~~~~~~~l~vRIGIhtG~ 277 (487)
. ......+.+-|.+++|-
T Consensus 112 ~----------T~~n~~~~lnia~~Ygg 129 (226)
T TIGR00055 112 D----------TKNNTDFTLNIAFNYGG 129 (226)
T ss_pred H----------hcCCCceEEEEEecCCC
Confidence 2 12234678888888874
No 79
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=33.58 E-value=1.7e+02 Score=28.72 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=50.7
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhh--cCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINA--YNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALD 249 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~--~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~ 249 (487)
+.+||+.-.+.+|. -+++|+-.+++-+...+...+.. ..|..++++||-=+ +| +...++++-+.+
T Consensus 39 ~~lT~yaFS~eN~~-----R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~i~vr~iG~~~~----Lp----~~l~~~i~~~e~ 105 (229)
T PRK10240 39 EALTLYAFSSENWN-----RPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSR----FN----SRLQERIRKSEA 105 (229)
T ss_pred CEEEEEeeehhhcC-----cCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeChhh----CC----HHHHHHHHHHHH
Confidence 68899988888773 56677777777666666554433 24778999998644 44 223333222222
Q ss_pred HHHHhhhhhhcCCCCCCeEEEEeeeecc
Q psy13820 250 LLHHSGRFKIRHLPYTPLRLRIGLHTGP 277 (487)
Q Consensus 250 i~~~l~~~~~~~~~~~~l~vRIGIhtG~ 277 (487)
. ......+.+.|.+++|.
T Consensus 106 ~----------T~~~~~~~Lnla~~Ygg 123 (229)
T PRK10240 106 L----------TAGNTGLTLNIAANYGG 123 (229)
T ss_pred H----------hcCCCCeEEEEEeccCC
Confidence 1 12234578888888873
No 80
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=33.49 E-value=1.6e+02 Score=29.20 Aligned_cols=83 Identities=11% Similarity=0.179 Sum_probs=50.4
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhh--cCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINA--YNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALD 249 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~--~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~ 249 (487)
+.|||+.-.+.+|. -+++|+-.+++-+...+.+.+.. -.|.+++++||--+ +| +...++++-+.+
T Consensus 54 ~~vTvYaFS~eN~~-----R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~iG~~~~----Lp----~~l~~~i~~~e~ 120 (241)
T PRK14842 54 KNISLYAFSTENWK-----RPITEIRSIFGLLVEFIETRLDTIHARGIRIHHSGSRKK----LT----RTVLDKIDFAMA 120 (241)
T ss_pred CEEEEEEeehhhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhh----CC----HHHHHHHHHHHH
Confidence 68999988888884 45667766666666555554433 24788889998653 45 233333322222
Q ss_pred HHHHhhhhhhcCCCCCCeEEEEeeeecc
Q psy13820 250 LLHHSGRFKIRHLPYTPLRLRIGLHTGP 277 (487)
Q Consensus 250 i~~~l~~~~~~~~~~~~l~vRIGIhtG~ 277 (487)
. . .....+.+-|.+++|.
T Consensus 121 ~---T-------~~~~~~~Lnia~~Ygg 138 (241)
T PRK14842 121 K---T-------KKNKNLTVNFCLNYGS 138 (241)
T ss_pred H---h-------cCCCceEEEEEecCCC
Confidence 2 1 1234578888888874
No 81
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=33.35 E-value=1.5e+02 Score=29.64 Aligned_cols=83 Identities=19% Similarity=0.293 Sum_probs=50.4
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhh--cCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINA--YNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALD 249 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~--~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~ 249 (487)
+.+||+.-.+.+|. -+++|+-.+++-+...+.+.+.. -.|..++++||--+ +| +....++.-+.+
T Consensus 68 k~lTvYaFS~EN~~-----R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~----Lp----~~l~~~i~~~e~ 134 (250)
T PRK14840 68 EVLTLFAFSTENFS-----RSKEEVAELFSLFNSQLDSQLPYLHENEIRLRCIGDLSK----LP----QELQNNIEQASS 134 (250)
T ss_pred CEEEEEEeehhhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhh----CC----HHHHHHHHHHHH
Confidence 68999988888883 56677766666665555554432 13788999999533 55 233333332222
Q ss_pred HHHHhhhhhhcCCCCCCeEEEEeeeecc
Q psy13820 250 LLHHSGRFKIRHLPYTPLRLRIGLHTGP 277 (487)
Q Consensus 250 i~~~l~~~~~~~~~~~~l~vRIGIhtG~ 277 (487)
. ......+.+-|.+++|.
T Consensus 135 ~----------T~~~~~~~Lnla~~Ygg 152 (250)
T PRK14840 135 A----------TAHYSRMELVLAINYGG 152 (250)
T ss_pred H----------hccCCceEEEEEecCCc
Confidence 2 11234577888888873
No 82
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=33.29 E-value=1.4e+02 Score=29.39 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=49.9
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhc--CcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY--NVYKVETIGDAYMVVGGLPVRIPDHADQIATMALD 249 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~--gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~ 249 (487)
+.+||+.-.+.+|. -+++||-.+++-+...+...+... .|..++++||-= .+|. ...++++-+.+
T Consensus 50 ~~lTvyaFS~eN~~-----R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~~----~Lp~----~~~~~i~~~e~ 116 (233)
T PRK14833 50 ECLTLYAFSTENWK-----RPKSEVDFLMKLLKKYLKDERSTYLENNIRFKAIGDLE----GFSK----ELRDTILQLEE 116 (233)
T ss_pred CEEEEeecchhhcC-----cCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeChh----hCCH----HHHHHHHHHHH
Confidence 68999988888773 566677766666666555433321 378899999843 3552 22222222211
Q ss_pred HHHHhhhhhhcCCCCCCeEEEEeeeecc
Q psy13820 250 LLHHSGRFKIRHLPYTPLRLRIGLHTGP 277 (487)
Q Consensus 250 i~~~l~~~~~~~~~~~~l~vRIGIhtG~ 277 (487)
.......+.+.|.+++|.
T Consensus 117 ----------~T~~~~~~~Lnia~~Y~g 134 (233)
T PRK14833 117 ----------DTRSFKGFTQVLALNYGS 134 (233)
T ss_pred ----------HccCCCceEEEEEecCCC
Confidence 122344678888888874
No 83
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=32.63 E-value=1.5e+02 Score=28.93 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=52.5
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhh--cCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINA--YNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALD 249 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~--~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~ 249 (487)
+.+|++.-.+.+| +-+++|+..+++-+...+.+.+.. -.|.+++++||.=+ +|. ...+++.-+.+
T Consensus 46 ~~lTvyaFS~eN~-----~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~i~vr~iGd~~~----Lp~----~~~~~~~~~e~ 112 (221)
T cd00475 46 KEVTLYAFSTENW-----KRPKEEVDFLMELFRDVLRRILKELEKLGVRIRIIGDLSL----LPE----SLQKEIKKAEE 112 (221)
T ss_pred CEEEEEeechhhh-----CcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeChhh----CCH----HHHHHHHHHHH
Confidence 6899998888777 356778887777777777766554 24788999998753 552 33333222222
Q ss_pred HHHHhhhhhhcCCCCCCeEEEEeeeecc
Q psy13820 250 LLHHSGRFKIRHLPYTPLRLRIGLHTGP 277 (487)
Q Consensus 250 i~~~l~~~~~~~~~~~~l~vRIGIhtG~ 277 (487)
. . .....+.+.|.+++|-
T Consensus 113 ~---T-------~~~~~~~lni~~~Y~g 130 (221)
T cd00475 113 A---T-------KNNTGFTLNVAFNYGG 130 (221)
T ss_pred H---h-------ccCCCcEEEEEecCCC
Confidence 1 1 1234577888887763
No 84
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=32.15 E-value=2.1e+02 Score=22.05 Aligned_cols=45 Identities=24% Similarity=0.452 Sum_probs=31.4
Q ss_pred CccHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHhccC
Q psy13820 108 KVNFVDTMFQMLEKYSNNLEDL--IRERTEQLDIEKKKTEQLLNRML 152 (487)
Q Consensus 108 ~v~~vd~m~~~le~~s~~le~~--i~er~~~l~~ek~k~~~LL~~~L 152 (487)
.+...+.+...+++|..-|.+- +...++.++.+......+|.+|+
T Consensus 14 ~~~~W~~L~~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr~lLkqYl 60 (60)
T PF14775_consen 14 KIRLWDALENFLKRYNKVLLDRAALIQEKESLEQQNEELRSLLKQYL 60 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4556677777778887666542 33445678888888888888875
No 85
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.66 E-value=2e+02 Score=28.29 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=49.9
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhh---hhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATI---NAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMAL 248 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii---~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al 248 (487)
+.+|++.-.+.+|. -+++||-.+++-+...+.+.+ .++ |..++++||-=+ +| +...+++.-+.
T Consensus 52 ~~lT~YaFS~EN~~-----Rp~~EV~~Lm~L~~~~l~~~~~~~~~~-~irvr~iGd~~~----Lp----~~l~~~i~~~e 117 (230)
T PRK14837 52 KYLSLYVFSTENWN-----RTDSEIEHLMFLIADYLSSEFNFYKKN-NIKIIVSGDIES----LS----EEVKKSIKDAI 117 (230)
T ss_pred CEEEEEEeehhhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEEEEcChhh----CC----HHHHHHHHHHH
Confidence 68899988888773 566777766666665554433 333 677899998643 44 23333332222
Q ss_pred HHHHHhhhhhhcCCCCCCeEEEEeeeecc
Q psy13820 249 DLLHHSGRFKIRHLPYTPLRLRIGLHTGP 277 (487)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~l~vRIGIhtG~ 277 (487)
+. ......+.+-|.+++|-
T Consensus 118 ~~----------T~~n~~~~Lnia~~Ygg 136 (230)
T PRK14837 118 SF----------TKNFDGLVLNLAINYGG 136 (230)
T ss_pred HH----------hcCCCCcEEEEEecCCC
Confidence 22 12234678888888874
No 86
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=30.85 E-value=17 Score=37.08 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=16.9
Q ss_pred CccccCCCCCCCCChhhHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVN 19 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~ 19 (487)
|+.||..+|++||++.++.
T Consensus 291 i~~~L~~dP~~R~t~~eiL 309 (353)
T cd07850 291 LSKMLVIDPEKRISVDDAL 309 (353)
T ss_pred HHHHcCCChhhCcCHHHHh
Confidence 4689999999999999983
No 87
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=30.46 E-value=35 Score=36.79 Aligned_cols=19 Identities=16% Similarity=0.403 Sum_probs=16.6
Q ss_pred CccccCCCCCCCCChhhHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVN 19 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~ 19 (487)
|..||..+|+.||++.++.
T Consensus 303 i~~~L~~dP~~Rps~~~~l 321 (478)
T PTZ00267 303 LDPLLSKNPALRPTTQQLL 321 (478)
T ss_pred HHHHhccChhhCcCHHHHH
Confidence 4689999999999999883
No 88
>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co
Probab=30.19 E-value=19 Score=36.20 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=16.1
Q ss_pred CccccCCCCCCCCChhhH
Q psy13820 1 MRQCWAEPPDMRPDFNEV 18 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~ 18 (487)
+.+||+.+|+.|||+.++
T Consensus 272 i~~~l~~~P~~R~t~~~l 289 (332)
T cd07857 272 LEKLLAFDPTKRISVEEA 289 (332)
T ss_pred HHHHccCCcccCCCHHHH
Confidence 367999999999999887
No 89
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.96 E-value=2.3e+02 Score=28.30 Aligned_cols=83 Identities=27% Similarity=0.267 Sum_probs=48.5
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhh--cCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINA--YNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALD 249 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~--~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~ 249 (487)
+.|||+.-.+.+|. -+++|+-.+++-+...+.+.+.. -.|..++++||.-+ +| +...++++-+.+
T Consensus 68 ~~vTvYaFS~eN~~-----R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~iri~viG~~~~----Lp----~~~~~~~~~~e~ 134 (251)
T PRK14830 68 KVLTLYAFSTENWK-----RPKDEVKFLMNLPVEFLDKFVPELIENNVKVNVIGDTDR----LP----EHTLRALEKAIE 134 (251)
T ss_pred CEEEEEEEehhhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcChhh----CC----HHHHHHHHHHHH
Confidence 68899887666663 56667777766555555554433 24788899999754 45 233333222222
Q ss_pred HHHHhhhhhhcCCCCCCeEEEEeeeecc
Q psy13820 250 LLHHSGRFKIRHLPYTPLRLRIGLHTGP 277 (487)
Q Consensus 250 i~~~l~~~~~~~~~~~~l~vRIGIhtG~ 277 (487)
. ......+.+.|.+++|-
T Consensus 135 ~----------T~~~~~~~Lnia~~Ygg 152 (251)
T PRK14830 135 K----------TKNNTGLILNFALNYGG 152 (251)
T ss_pred H----------ccCCCceEEEEEecCCC
Confidence 1 11234577777777763
No 90
>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl
Probab=29.93 E-value=16 Score=36.56 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=18.6
Q ss_pred CccccCCCCCCCCChhhHHHHhh
Q psy13820 1 MRQCWAEPPDMRPDFNEVNDLFK 23 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~~~~~ 23 (487)
|++||..+|++||++..+.+.+.
T Consensus 224 i~~~L~~dp~~R~~~~~~~e~l~ 246 (312)
T cd05585 224 LIGLLSRDPTRRLGYNGAQEIKN 246 (312)
T ss_pred HHHHcCCCHHHcCCCCCHHHHHc
Confidence 46899999999999877766553
No 91
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.18 E-value=2.2e+02 Score=28.49 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=50.0
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhh--cCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINA--YNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALD 249 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~--~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~ 249 (487)
+.+|++.-.+.+|. -+++||-.+++-+...+.+.+.. -.|..++++||-- .+|. ...++++-+.+
T Consensus 64 ~~lTvyaFS~EN~~-----Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~iGd~~----~Lp~----~l~~~i~~~e~ 130 (253)
T PRK14832 64 KALTAYAFSTENWQ-----RPIEEVDFLMLLFERLLRRELAQMHREGVRISFIGDLS----ALPK----SLQTEMERSMT 130 (253)
T ss_pred CEEEEEEeehhhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCch----hCCH----HHHHHHHHHHH
Confidence 68999988888873 45677776666665555554432 2478899999953 3552 33333322222
Q ss_pred HHHHhhhhhhcCCCCCCeEEEEeeeecc
Q psy13820 250 LLHHSGRFKIRHLPYTPLRLRIGLHTGP 277 (487)
Q Consensus 250 i~~~l~~~~~~~~~~~~l~vRIGIhtG~ 277 (487)
. ......+.+-|.+++|.
T Consensus 131 ~----------T~~~~~~~Lnia~~Ygg 148 (253)
T PRK14832 131 E----------TLNNQAIHFTVAVNYGS 148 (253)
T ss_pred H----------hcCCCceEEEEEecCCC
Confidence 1 11234578888888874
No 92
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=28.57 E-value=20 Score=36.55 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=16.6
Q ss_pred CccccCCCCCCCCChhhHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVN 19 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~ 19 (487)
|.+||..+|++||++.++.
T Consensus 295 i~~mL~~dP~~R~t~~e~l 313 (359)
T cd07876 295 LSKMLVIDPDKRISVDEAL 313 (359)
T ss_pred HHHHhccCcccCCCHHHHh
Confidence 3579999999999999883
No 93
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=27.36 E-value=2.3e+02 Score=28.03 Aligned_cols=85 Identities=15% Similarity=0.216 Sum_probs=60.6
Q ss_pred EEEEecCCchhhhccCCch---hHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEe-cCCCCCchhHHHHHHHHHHHH
Q psy13820 176 IYFSDIVGFTTISAYSTPF---EVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG-GLPVRIPDHADQIATMALDLL 251 (487)
Q Consensus 176 VLF~DIvgFT~ls~~~~p~---evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavf-Glp~~~~~~a~~a~~~Al~i~ 251 (487)
|..+-|-+|-.+++..+|. .+..+-+++|..+.+.+..++|++..+-=|-++++. |.. ...|+ .++
T Consensus 4 it~Iqld~YgpWT~~p~prRE~dlQtlQarlyadl~~~~~~~~g~vf~~RfDnmlait~gi~--~~~h~--------rvq 73 (250)
T COG2429 4 ITLIQLDNYGPWTETPGPRREWDLQTLQARLYADLQKIFGGRGGLVFFTRFDNMLAITNGID--LEAHA--------RVQ 73 (250)
T ss_pred EEEEEecCcCcccCcCCCchHHHHHHHHHHHHHHHHHHHhccCCeeeeeehhhhhHhhcCCC--HHHHH--------HHH
Confidence 4566788999999988875 566777889999999999999999888877777664 221 01121 234
Q ss_pred HHhhhhhhcCCCCCCeEEEEeeeecc
Q psy13820 252 HHSGRFKIRHLPYTPLRLRIGLHTGP 277 (487)
Q Consensus 252 ~~l~~~~~~~~~~~~l~vRIGIhtG~ 277 (487)
+.++. .-|+.++++|.+|.
T Consensus 74 ~~I~n-------ryPvtVs~~ig~g~ 92 (250)
T COG2429 74 ESIRN-------RYPVTVSMCIGTGR 92 (250)
T ss_pred HHHhc-------cCCeEEEEEeecCC
Confidence 44432 34788888888875
No 94
>PRK14140 heat shock protein GrpE; Provisional
Probab=27.04 E-value=3.3e+02 Score=26.01 Aligned_cols=63 Identities=13% Similarity=0.261 Sum_probs=41.3
Q ss_pred HHHHHHHHHhccCChHHHHHHhcCCCCCCCCceeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEE
Q psy13820 140 EKKKTEQLLNRMLPSSVAEKLKLGMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKV 219 (487)
Q Consensus 140 ek~k~~~LL~~~LP~~va~~L~~g~~~~~~~~~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~v 219 (487)
.+.-..+++..+|| +++.|.......+ .......++.-+...+..|..++.+||...+
T Consensus 82 ~~~a~~~~~~~LLp--vlDnLerAl~~~~--------------------~~~~~~~i~~Gv~mi~k~l~~~L~k~GV~~i 139 (191)
T PRK14140 82 EKYRAQSLASDLLP--ALDNFERALQIEA--------------------DDEQTKSLLKGVEMVHRQLLEALKKEGVEVI 139 (191)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHhccC--------------------ccchHHHHHHHHHHHHHHHHHHHHHCCCEee
Confidence 33445678888998 6666643321110 0011245666777888999999999999888
Q ss_pred eeeCC
Q psy13820 220 ETIGD 224 (487)
Q Consensus 220 k~iGD 224 (487)
..+|+
T Consensus 140 ~~~Ge 144 (191)
T PRK14140 140 EAVGE 144 (191)
T ss_pred CCCCC
Confidence 77776
No 95
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=26.41 E-value=7.3e+02 Score=26.47 Aligned_cols=91 Identities=16% Similarity=0.224 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHhhHHHHHHHHhhcCCCccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy13820 66 DTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTE 145 (487)
Q Consensus 66 d~m~~mle~y~~~LE~lVee~~~~L~~ek~~te~ll~~mlp~~v~~vd~m~~~le~~s~~le~~i~er~~~l~~ek~k~~ 145 (487)
+.....++....+|...+...+...+..-.....-|...-|..+ +...-+.++.....|...+....+.....-+...
T Consensus 308 ~~~~q~L~~l~~rL~~a~~~~L~~~~~~L~~l~~rL~~lsP~~~--L~r~~qrL~~L~~rL~~a~~~~L~~~~~rL~~l~ 385 (438)
T PRK00286 308 AQQQQRLDRLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRR--IERAQQRLEQLEQRLRRAMRRQLKRKRQRLEALA 385 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333333333344444445532 3444445555555555555444444444444555
Q ss_pred HHHhccCChHHHH
Q psy13820 146 QLLNRMLPSSVAE 158 (487)
Q Consensus 146 ~LL~~~LP~~va~ 158 (487)
..|..+-|..++.
T Consensus 386 ~rL~~lsP~~~L~ 398 (438)
T PRK00286 386 QQLEALSPLATLA 398 (438)
T ss_pred HHHHhCCChhHhc
Confidence 5566677765543
No 96
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.39 E-value=6.1e+02 Score=24.64 Aligned_cols=44 Identities=20% Similarity=0.349 Sum_probs=31.7
Q ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHhHHhhHHHHHHHHhhcC
Q psy13820 63 NFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLP 106 (487)
Q Consensus 63 n~~d~m~~mle~y~~~LE~lVee~~~~L~~ek~~te~ll~~mlp 106 (487)
|..+.=+.-+|+|-..+-..+...+.++..=....+-+|..++|
T Consensus 4 nhf~~Qi~~iE~Wl~~~~~~~~k~~~~~~~~e~~~nsfl~~~~p 47 (214)
T cd07609 4 NHFDDQVDAIEKWLDGYVSSTKKLYSSLDELERVINSFLSHLLP 47 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45555566677777776666666666666667777888999999
No 97
>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate
Probab=26.34 E-value=20 Score=35.94 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=17.2
Q ss_pred CccccCCCCCCCCChhh--HHHHh
Q psy13820 1 MRQCWAEPPDMRPDFNE--VNDLF 22 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~--~~~~~ 22 (487)
|++||..+|++||+..+ +.+.+
T Consensus 229 i~~~l~~~P~~R~~a~~~~~~~~~ 252 (318)
T cd05582 229 LRALFKRNPANRLGAGPDGVEEIK 252 (318)
T ss_pred HHHHhhcCHhHcCCCCCCCHHHHh
Confidence 46899999999999666 55444
No 98
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=25.89 E-value=23 Score=36.07 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=16.7
Q ss_pred CccccCCCCCCCCChhhHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVN 19 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~ 19 (487)
|.+||..+|++|||..++.
T Consensus 291 i~~mL~~dP~~Rps~~ell 309 (355)
T cd07874 291 LSKMLVIDPAKRISVDEAL 309 (355)
T ss_pred HHHHhcCCchhcCCHHHHh
Confidence 3579999999999999984
No 99
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=25.78 E-value=3.6e+02 Score=24.44 Aligned_cols=35 Identities=11% Similarity=0.312 Sum_probs=27.7
Q ss_pred CchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEE
Q psy13820 192 TPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAY 226 (487)
Q Consensus 192 ~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~ 226 (487)
....+..-++.++..|..++.++|...+...|+-|
T Consensus 86 ~~~~~~~g~~~~~~~l~~~L~~~Gv~~i~~~G~~F 120 (165)
T PF01025_consen 86 EEESLLEGLEMILKQLEDILEKNGVEEIEPVGEPF 120 (165)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTEEEE--TSSB-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCCEecCCCCCCC
Confidence 34577888999999999999999999999888754
No 100
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=25.33 E-value=8.3e+02 Score=26.22 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=46.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHhhHHHHHHHHhhcCCCccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13820 69 FQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLL 148 (487)
Q Consensus 69 ~~mle~y~~~LE~lVee~~~~L~~ek~~te~ll~~mlp~~v~~vd~m~~~le~~s~~le~~i~er~~~l~~ek~k~~~LL 148 (487)
-..++.....|...++..+...+.........|..+-|.. .+...-+.++.....+...+.........+-......|
T Consensus 306 ~qrLd~L~~RL~~a~~~~L~~k~~rL~~L~~rL~aLSPl~--~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~l~~~~~~l 383 (432)
T TIGR00237 306 QLQFEKLEKRKQAALNKQLERTRQKKTRLTKRLTQTNPSP--QILRAQTRTEQLNRRLNALKNAQANLKLPQFGTLVGKL 383 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333444444566666663 23444445555555565555555444444455556667
Q ss_pred hccCChHHHHH
Q psy13820 149 NRMLPSSVAEK 159 (487)
Q Consensus 149 ~~~LP~~va~~ 159 (487)
..+=|..++.+
T Consensus 384 ~~lsP~~~L~R 394 (432)
T TIGR00237 384 NALSPLEVLAR 394 (432)
T ss_pred HhCCchhhhcC
Confidence 77778776543
No 101
>PLN00181 protein SPA1-RELATED; Provisional
Probab=24.34 E-value=90 Score=36.05 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.5
Q ss_pred ccccCCCCCCCCChhhHHH
Q psy13820 2 RQCWAEPPDMRPDFNEVND 20 (487)
Q Consensus 2 ~~cw~~~p~~rp~~~~~~~ 20 (487)
..||+.+|..||++.+|..
T Consensus 246 ~~~L~~~P~~Rps~~eil~ 264 (793)
T PLN00181 246 LWLLHPEPSCRPSMSELLQ 264 (793)
T ss_pred HHhCCCChhhCcChHHHhh
Confidence 4699999999999999843
No 102
>PRK14163 heat shock protein GrpE; Provisional
Probab=23.27 E-value=7e+02 Score=24.31 Aligned_cols=58 Identities=16% Similarity=0.291 Sum_probs=42.2
Q ss_pred HHHHHHHHHhccCChHHHHHHhcCCCCCCCCceeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEE
Q psy13820 140 EKKKTEQLLNRMLPSSVAEKLKLGMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKV 219 (487)
Q Consensus 140 ek~k~~~LL~~~LP~~va~~L~~g~~~~~~~~~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~v 219 (487)
.+.-..+++..+|| |++.|...... ..++.-++..+..|..++.+||...+
T Consensus 85 ~~~a~~~~~~~LLp--VlDnLerAl~~---------------------------~~l~~Gv~mi~k~l~~~L~k~Gv~~I 135 (214)
T PRK14163 85 KEIAVANLLSELLP--VLDDVGRAREH---------------------------GELVGGFKSVAESLETTVAKLGLQQF 135 (214)
T ss_pred HHHHHHHHHHHHhh--hHhHHHHHHhc---------------------------hhHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 34456678888999 77777544211 03667778889999999999999998
Q ss_pred eeeCCEE
Q psy13820 220 ETIGDAY 226 (487)
Q Consensus 220 k~iGD~~ 226 (487)
..+|+-|
T Consensus 136 ~~~G~~F 142 (214)
T PRK14163 136 GKEGEPF 142 (214)
T ss_pred CCCCCCC
Confidence 8877643
No 103
>COG1353 Predicted CRISPR-associated polymerase [Defense mechanisms]
Probab=23.21 E-value=3.5e+02 Score=31.61 Aligned_cols=115 Identities=19% Similarity=0.198 Sum_probs=72.2
Q ss_pred ceeEEEEEEecCCchhhhccCCc-------hhHHHHHHHHHHHHHHhhhh---------------cCcEEEeeeCCEEEE
Q psy13820 171 FREVTIYFSDIVGFTTISAYSTP-------FEVVDLLNDLYTCFDATINA---------------YNVYKVETIGDAYMV 228 (487)
Q Consensus 171 ~~~vTVLF~DIvgFT~ls~~~~p-------~evv~lLn~~~~~~~~ii~~---------------~gG~~vk~iGD~~ma 228 (487)
..-++++-+|+-....+....-. ......+..+|......+.. +.|++|=--||-++|
T Consensus 519 ~~~~~~lk~DvD~mGk~~~~~~~~~~is~~s~~s~~~s~ff~~~~~~i~~~~~~~~~~~~~~~~~~~~~iVYsGGDDvla 598 (799)
T COG1353 519 TKYLAILKMDVDNMGKLFSEGLKKDTISRYSTFSRMLSLFFRGYLNKIAEDIRFRVLPSPLLDEDPNGYIVYSGGDDVLA 598 (799)
T ss_pred cceeEEEEecHHHHHHHHHhhccccchhhhccchHHHHHHHHHHHHHHhhchhhhhccccccCCCCcEEEEEecCCceEE
Confidence 35589999999988887665211 12345555555544443333 358888888999998
Q ss_pred EecCCCCCchhHHHHHHHHHHHHHHhhhhhhcCCCCCCeEEEEeeeecceEEeEeCCCCCcceeeCcHHHHHHHHHhcC
Q psy13820 229 VGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTG 307 (487)
Q Consensus 229 vfGlp~~~~~~a~~a~~~Al~i~~~l~~~~~~~~~~~~l~vRIGIhtG~Vv~GvvG~~~~~y~v~GdtVN~AsRLes~a 307 (487)
+- +...+..+|.++.+.+.++...+. .+ .+..|-+++ +...| ++..+..|..++.-|
T Consensus 599 ~g--------~~d~vld~a~el~~~F~~~~~~~~---~~----t~SaGi~i~---h~k~P----l~~~~~~~~~~e~~A 655 (799)
T COG1353 599 VG--------PWDDVLDFAKELRELFSEFTGKNP---KL----TLSAGIVIV---HHKFP----LYFALREARELEEEA 655 (799)
T ss_pred ec--------cHHHHHHHHHHHHHHHHHHhcCCC---ce----eEEEEEEEe---cCCCh----HHHHHHHHHHHHHHH
Confidence 84 445899999999999887754431 23 444554433 34444 556666666665433
No 104
>KOG4496|consensus
Probab=22.85 E-value=2e+02 Score=26.44 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=23.9
Q ss_pred cchhHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q psy13820 62 VNFVDTMFQMLEKYSNNLEDLIRERTEQLDI 92 (487)
Q Consensus 62 ~n~~d~m~~mle~y~~~LE~lVee~~~~L~~ 92 (487)
.+|+.+|.+||++|.+..|+..++--..++.
T Consensus 29 N~fimh~tefLN~F~n~cEd~Lad~elridq 59 (194)
T KOG4496|consen 29 NCFIMHMTEFLNNFGNKCEDILADAELRIDQ 59 (194)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4688999999999999999888765444433
No 105
>PF08247 ENOD40: ENOD40 protein; InterPro: IPR013186 The soybean early nodulin 40 (ENOD40) mRNA contains two short overlapping ORFs; in vitro translation yields two peptides of 12 and 24 amino acids []. The putative role of the ENOD40 genes has been in favour of organogenesis, such as induction of the cortical cell divisions that lead to initiation of nodule primordia, in developing lateral roots and embryonic tissues. This supports the hypothesis for a role of ENOD40 in lateral organ development [].
Probab=22.60 E-value=29 Score=18.07 Aligned_cols=6 Identities=50% Similarity=1.586 Sum_probs=4.1
Q ss_pred CccccC
Q psy13820 1 MRQCWA 6 (487)
Q Consensus 1 ~~~cw~ 6 (487)
|+-||.
T Consensus 1 m~l~wq 6 (12)
T PF08247_consen 1 MELCWQ 6 (12)
T ss_pred CceeEe
Confidence 567775
No 106
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.49 E-value=2.1e+02 Score=28.57 Aligned_cols=83 Identities=20% Similarity=0.224 Sum_probs=49.4
Q ss_pred eeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhh--cCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHH
Q psy13820 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINA--YNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALD 249 (487)
Q Consensus 172 ~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~--~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~ 249 (487)
+.+|++.-.+.+| +-+++|+-.+++-+...+.+.+.. -.|..++++||.-+ +|. ...+++.-+.+
T Consensus 60 ~~lTvYaFS~eN~-----~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~irv~viG~~~~----Lp~----~~~~~i~~~e~ 126 (253)
T PRK14836 60 EMLTLFAFSSENW-----LRPADEVSALMELFLKALDREVDKLHRNGIRVRFIGDRSR----LSP----KLQERMEYAER 126 (253)
T ss_pred CEEehhHhhhhhc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEecccc----CCH----HHHHHHHHHHH
Confidence 5788887555555 356778888888777776654443 14778999999654 442 22222222211
Q ss_pred HHHHhhhhhhcCCCCCCeEEEEeeeecc
Q psy13820 250 LLHHSGRFKIRHLPYTPLRLRIGLHTGP 277 (487)
Q Consensus 250 i~~~l~~~~~~~~~~~~l~vRIGIhtG~ 277 (487)
. ......+.+.|.+++|-
T Consensus 127 ~----------T~~n~~~~Lnla~~Ygg 144 (253)
T PRK14836 127 L----------TASNTRLILSLAVSYGG 144 (253)
T ss_pred H----------hccCCceEEEEEecCCC
Confidence 1 11234578888888873
No 107
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=22.07 E-value=1.2e+03 Score=26.42 Aligned_cols=84 Identities=17% Similarity=0.144 Sum_probs=61.5
Q ss_pred CCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCchhHHHHHHHHHHHHHHhhhhhhcCCCCCCeEEE
Q psy13820 191 STPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLR 270 (487)
Q Consensus 191 ~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~~~a~~a~~~Al~i~~~l~~~~~~~~~~~~l~vR 270 (487)
..|..+-..+..-...+..-++.-+..+..-.+|.-..+.+-+..-++--.+.+..|++.... .+...+.++
T Consensus 453 ~~~v~l~~ai~~Al~ll~~R~~~~~~~l~~~~~~~~~~V~~~~iRLeQVLvNLl~NALDA~~~--------~~~~~i~i~ 524 (603)
T COG4191 453 AGPVSLREAIEGALELLRGRLRAAGVELELDLPDAPLWVMANEIRLEQVLVNLLQNALDAMAG--------QEDRRLSIR 524 (603)
T ss_pred cCCccHHHHHHHHHHHHHHhhhccCceeeccCCCCCceeecchhhHHHHHHHHHHHHHHHhcC--------CCCCeeEEE
Confidence 566677777888888888888888888888899988888887776666666777777776533 234567788
Q ss_pred EeeeecceEEeE
Q psy13820 271 IGLHTGPCCAGV 282 (487)
Q Consensus 271 IGIhtG~Vv~Gv 282 (487)
..=+-|.|+..|
T Consensus 525 ~~~~~~~v~l~V 536 (603)
T COG4191 525 AQREGGQVVLTV 536 (603)
T ss_pred EEecCCeEEEEE
Confidence 777767766653
No 108
>KOG1023|consensus
Probab=22.04 E-value=1.2e+02 Score=33.38 Aligned_cols=34 Identities=38% Similarity=0.615 Sum_probs=26.7
Q ss_pred HHHHhhcCCC---ccHHHHHHHHHHHHhHHHHHHHHH
Q psy13820 99 QLLNRMLPRK---VNFVDTMFQMLEKYSNNLEDLIRE 132 (487)
Q Consensus 99 ~ll~~mlp~~---v~~vd~m~~~le~~s~~le~~i~e 132 (487)
..+..+.+.. -+++|.|+.++++|+++|++.+++
T Consensus 219 ~~~~~~~~~~~~~~nl~D~m~~~le~Y~~nLe~~v~e 255 (484)
T KOG1023|consen 219 SKLLTINKGGSSKGNLMDSLFRMLESYADNLEKLVDE 255 (484)
T ss_pred hhhhhhcccccccchhHHHHHHHHHHHHhhhHHHHHH
Confidence 3455555543 389999999999999999998864
No 109
>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase. Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription
Probab=20.98 E-value=33 Score=35.22 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=16.5
Q ss_pred CccccCCCCCCCCChhhHH
Q psy13820 1 MRQCWAEPPDMRPDFNEVN 19 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~~~~~ 19 (487)
|+.||..||++||+..++.
T Consensus 268 i~~mL~~dP~~R~t~~e~l 286 (372)
T cd07853 268 LCRMLVFDPDKRISAADAL 286 (372)
T ss_pred HHHhCCCChhhCcCHHHHh
Confidence 3579999999999998874
No 110
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.77 E-value=8.1e+02 Score=24.08 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=15.6
Q ss_pred chhHHHHHHHHHHHHhHHHHHHHHHH
Q psy13820 63 NFVDTMFQMLEKYSNNLEDLIRERTE 88 (487)
Q Consensus 63 n~~d~m~~mle~y~~~LE~lVee~~~ 88 (487)
.++++--..|+.|.+..+.|..|+..
T Consensus 25 ~~~e~ee~~L~e~~kE~~~L~~Er~~ 50 (230)
T PF10146_consen 25 ESLENEEKCLEEYRKEMEELLQERMA 50 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666676666666666554
No 111
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=20.61 E-value=7.1e+02 Score=23.32 Aligned_cols=88 Identities=19% Similarity=0.320 Sum_probs=0.0
Q ss_pred chhHHH-------HHHHHHHHHhHHHHHHHHHHH----hHHhhHHHHHHHHhhcCCCccHHHHHHHHH-HHHhHHHHHHH
Q psy13820 63 NFVDTM-------FQMLEKYSNNLEDLIRERTEQ----LDIEKKKTEQLLNRMLPRKVNFVDTMFQML-EKYSNNLEDLI 130 (487)
Q Consensus 63 n~~d~m-------~~mle~y~~~LE~lVee~~~~----L~~ek~~te~ll~~mlp~~v~~vd~m~~~l-e~~s~~le~~i 130 (487)
++||.| ++......+++|++-.+...+ +..-...-+..+.+..-..-+........+ ..+.+.+.+.+
T Consensus 8 ~v~da~w~~~~~sls~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~i 87 (165)
T PF09602_consen 8 NVMDAFWKQWSQSLSLFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSI 87 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy13820 131 RERTEQLDIEKKKTEQLLNR 150 (487)
Q Consensus 131 ~er~~~l~~ek~k~~~LL~~ 150 (487)
.+.+.+..+-..++..++.+
T Consensus 88 nE~t~k~~El~~~i~el~~~ 107 (165)
T PF09602_consen 88 NEWTDKLNELSAKIQELLLS 107 (165)
T ss_pred HHHHHHHHHHHHHHHHHHcc
No 112
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=20.59 E-value=6e+02 Score=22.46 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=43.1
Q ss_pred HHHHHHHHHhccCChHHHHHHhcCCCCCCCCceeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEE
Q psy13820 140 EKKKTEQLLNRMLPSSVAEKLKLGMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKV 219 (487)
Q Consensus 140 ek~k~~~LL~~~LP~~va~~L~~g~~~~~~~~~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~v 219 (487)
.+...+.++..+|| +++.+...-...... .....+..-++.++..|..++.++|...+
T Consensus 30 ~~~~~~~~~~~ll~--v~D~le~a~~~~~~~--------------------~~~~~~~~g~~~i~~~l~~~L~~~Gv~~i 87 (137)
T cd00446 30 RKYAIEKFAKDLLP--VLDNLERALEAAKKE--------------------EELKNLVEGVEMTLKQLLDVLEKHGVEKI 87 (137)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHhccccc--------------------chHHHHHHHHHHHHHHHHHHHHHCCCEEE
Confidence 33456778888888 666664332111000 12356778888999999999999999998
Q ss_pred eeeCC
Q psy13820 220 ETIGD 224 (487)
Q Consensus 220 k~iGD 224 (487)
...|+
T Consensus 88 ~~~g~ 92 (137)
T cd00446 88 EPEGE 92 (137)
T ss_pred CCCCC
Confidence 88776
No 113
>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C. Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re
Probab=20.41 E-value=28 Score=34.91 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=13.8
Q ss_pred CccccCCCCCCCCCh
Q psy13820 1 MRQCWAEPPDMRPDF 15 (487)
Q Consensus 1 ~~~cw~~~p~~rp~~ 15 (487)
|+.||..+|++||+.
T Consensus 227 i~~~l~~dP~~R~s~ 241 (318)
T cd05570 227 LKSFLTKNPEKRLGC 241 (318)
T ss_pred HHHHccCCHHHcCCC
Confidence 468999999999998
Done!