RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13820
(487 letters)
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 348 bits (895), Expect = e-120
Identities = 75/207 (36%), Positives = 118/207 (57%), Gaps = 4/207 (1%)
Query: 165 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 224
+ + + E ++ F+DIVGFT ++ + P ++V L+ LY+ FD ++ + + K+E GD
Sbjct: 2 NIIADKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGD 61
Query: 225 AYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVG 284
+YMVV G+P PDH +A ALD+ + + + K P+ LR+GL TGP AGVVG
Sbjct: 62 SYMVVSGVPRPRPDHTQALADFALDMTNVAAQLKDPR--GNPVPLRVGLATGPVVAGVVG 119
Query: 285 LTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKM 344
RYC++GD VN ASR+EST + +I + + +L D+ L RG +KGKG M
Sbjct: 120 SRRFRYCVWGDAVNVASRMESTDSVGQIQVPDEVYERLK--DDFVLRERGHINVKGKGVM 177
Query: 345 PTYWLLGKKGFYKELPTPPPLGDSHGL 371
T++L+G+K + G+
Sbjct: 178 RTWYLIGRKVAADPGEVRGAEPRTAGV 204
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 346 bits (889), Expect = e-118
Identities = 82/206 (39%), Positives = 107/206 (51%), Gaps = 6/206 (2%)
Query: 163 GMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETI 222
G V + F VT+ FSDIVGFT I + +P +V+ +LN LYT FD +VYKVETI
Sbjct: 4 GQVVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETI 63
Query: 223 GDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGV 282
GDAY V GGL HA QIA MAL ++ S H P+++RIGLH+G AGV
Sbjct: 64 GDAYCVAGGLHKESDTHAVQIALMALKMMELSDEVMSPHGE--PIKMRIGLHSGSVFAGV 121
Query: 283 VGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKG 342
VG+ MPRYCLFG+ V A++ ES P +I++S T L + R EL
Sbjct: 122 VGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPRSREELPPNF 181
Query: 343 ----KMPTYWLLGKKGFYKELPTPPP 364
++L + P
Sbjct: 182 PSEIPGICHFLDAYQQGTNSKPCFQK 207
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 339 bits (871), Expect = e-116
Identities = 81/212 (38%), Positives = 113/212 (53%), Gaps = 14/212 (6%)
Query: 163 GMPVDPEDFREVTIYFSDIVGFTTISAYSTP----FEVVDLLNDLYTCFDATINAYN--- 215
PV + + VTI FS IVGF + ++V+LLNDLYT FD ++
Sbjct: 2 KRPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPF 61
Query: 216 VYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHT 275
VYKVET+GD YM V GLP HA I +ALD++ +G+ ++ +++ IG+HT
Sbjct: 62 VYKVETVGDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVDG---ESVQITIGIHT 118
Query: 276 GPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKL----DQVGDYQLE 331
G GV+G MPRYCLFG+TVN SR E+TG +I++S T L + + LE
Sbjct: 119 GEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLE 178
Query: 332 YRGETELKGKGKMPTYWLLGKKGFYKELPTPP 363
+RG +KGK + W L +K E
Sbjct: 179 HRGPVSMKGKKEPMQVWFLSRKNTGTEETKQD 210
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 323 bits (829), Expect = e-110
Identities = 87/189 (46%), Positives = 116/189 (61%), Gaps = 3/189 (1%)
Query: 166 VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY-NVYKVETIGD 224
++ E T+ FSDIVGFT I++ S+P EV LL++LY FDA I Y +YKVETIGD
Sbjct: 2 APAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGD 61
Query: 225 AYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVG 284
AYMVV + V DHAD + AL + + ++ P+R+R+G+H+GP AGVVG
Sbjct: 62 AYMVVCNVTVPCDDHADVLLEFALRMHEEA--SRVASSLGEPVRIRVGMHSGPVVAGVVG 119
Query: 285 LTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKM 344
MPR+ LFGDTVNTASR+ES G +IH+S L +++ RG +KGKG M
Sbjct: 120 RKMPRFXLFGDTVNTASRMESHGEAGQIHISEACYCCLRSKERFEIRERGNITVKGKGTM 179
Query: 345 PTYWLLGKK 353
TY L +
Sbjct: 180 RTYLLSPLE 188
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 315 bits (810), Expect = e-107
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 21/210 (10%)
Query: 163 GMPVDPEDFREVTIYFSDIVGFTTISA----YSTPFEVVDLLNDLYTCFDATI---NAYN 215
+ + + V + F+ I F E + LLN++ FD +
Sbjct: 4 NEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSG 63
Query: 216 VYKVETIGDAYMVVGGLPVR-----------IPDHADQIATMALDLLHHSGRFKIRHLPY 264
V K++TIG YM GL H + A L+ I +
Sbjct: 64 VEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKL--DAINKHSF 121
Query: 265 TPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQ 324
+LR+G++ GP AGV+G P+Y ++G+TVN ASR++STG +I ++ +T L
Sbjct: 122 NDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQT 181
Query: 325 VGDYQLEYRGETELKGKGKMPTYWLLGKKG 354
+G Y RG +KGKG + TY++ +
Sbjct: 182 LG-YTCTCRGIINVKGKGDLKTYFVNTEMS 210
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 309 bits (794), Expect = e-104
Identities = 56/225 (24%), Positives = 106/225 (47%), Gaps = 10/225 (4%)
Query: 137 LDIEKKKTEQLLNRMLPSSVAEKLKLGMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEV 196
+ ++ + ++ + + + V+I F+DI GFT++++ T E+
Sbjct: 1 MHHHHHHAMEMKADINA---KQEDMMFHKIYIQKHDNVSILFADIEGFTSLASQCTAQEL 57
Query: 197 VDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGR 256
V LN+L+ FD + +++ +GD Y V GLP DHA M +D++
Sbjct: 58 VMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMGMDMIEAISL 117
Query: 257 FKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSA 316
R + + +R+G+H+G GV+GL ++ ++ + V A+ +E+ G RIH++
Sbjct: 118 V--REMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITK 175
Query: 317 DTKAKLDQVGDYQLEYRGETELKGKGK---MPTYWLLGKKGFYKE 358
T + L+ GDY++E E K + T+ +L KE
Sbjct: 176 ATLSYLN--GDYEVEPGCGGERNAYLKEHSIETFLILRCTQKRKE 218
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 223 bits (570), Expect = 2e-68
Identities = 57/316 (18%), Positives = 104/316 (32%), Gaps = 61/316 (19%)
Query: 66 DTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNN 125
+ + E + I K ++ L+++++P
Sbjct: 136 EGLSHAAEAMRYTALEAIMRPGATELDIAKGSQALVSQIVPL------------------ 177
Query: 126 LEDLIRERTEQLDIEKKKTEQLLNRMLPSSVAEKLKLGMPVDPEDFREVTIYFSDIVGFT 185
L +I++ L M+ + + R+VT+ F+D+VGFT
Sbjct: 178 LGPMIQDMLFMQ----------LRHMMETEAVNAGERAAGKPLPGARQVTVAFADLVGFT 227
Query: 186 TISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIAT 245
+ + E+ L L + A V+ ++TIGDA M+V P + D
Sbjct: 228 QLGEVVSAEELGHLAGRLAGLARD-LTAPPVWFIKTIGDAVMLVCPDPAPLLDT------ 280
Query: 246 MALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLES 305
L L+ RLR G+ +G + FG VN ASR+
Sbjct: 281 -VLKLVEVVDTDN------NFPRLRAGVASGMAVSRA-------GDWFGSPVNVASRVTG 326
Query: 306 TGAPWRIHLSADTKAKLD---QVGDYQLEYRGETELKG-KGKMPTYWLLGKK-------- 353
P + ++ + L + +Q + G L+G +G + + +
Sbjct: 327 VARPGAVLVADSVREALGDAPEADGFQWSFAGPRRLRGIRGDVRLFRVRRGATRTGSGGA 386
Query: 354 GFYKELPTPPPLGDSH 369
+L P SH
Sbjct: 387 AQDDDLAGSSPGSRSH 402
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 208 bits (530), Expect = 1e-64
Identities = 46/219 (21%), Positives = 80/219 (36%), Gaps = 32/219 (14%)
Query: 166 VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDA 225
E VT+ F+DI T + A + P + D + + + I Y Y+V+T+GD+
Sbjct: 5 APKEPTDPVTLIFTDIESSTALWA-AHPDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDS 63
Query: 226 YMVVGGLPVRIPDHADQIATMALD-------LLHHSGRFKIRHLP--------------- 263
+M+ P A ++ L L F+ +
Sbjct: 64 FMIASKSPFAAVQLAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTPPTAHMDPE 123
Query: 264 -----YTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADT 318
+ LR+R+G+HTG C +T Y +G T N A+R ES ++ ++
Sbjct: 124 VYSRLWNGLRVRVGIHTGLCDIRHDEVT-KGYDYYGRTPNMAARTESVANGGQVLMTHAA 182
Query: 319 KAKL--DQVGDYQLEYRGETELKGK-GKMPTYWLLGKKG 354
L + + G+ L+G + Y L
Sbjct: 183 YMSLSAEDRKQIDVTALGDVALRGVSDPVKMYQLNTVPS 221
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 138 bits (350), Expect = 1e-38
Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 22/195 (11%)
Query: 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTC-------FDATINAYNVYKVETIGD 224
R +TI SD+ GFT+ S P EVV +LN + TI+ + +GD
Sbjct: 13 RPITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEF-------MGD 65
Query: 225 AYMVVGGLPVRIPDHADQIATMALDLLHHSGRF--KIRHLPYTPLRLRIGLHTGPCCAGV 282
+V+ G P D A + +++ ++ L PL + IG++TG G
Sbjct: 66 GILVLFGAPTSQQDDALRAVACGVEMQLALREVNQQVTGLGLQPLEMGIGINTGEVVVGN 125
Query: 283 VGLTMPR--YCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKG 340
+G + R Y + G VN R+ES +I +S+ T + + KG
Sbjct: 126 IG-SEKRTKYGVVGAQVNLTYRIESYTTGGQIFISSTTLEAAG--DRVHVNGNRTVQPKG 182
Query: 341 KGK-MPTYWLLGKKG 354
+ + + G
Sbjct: 183 VKDPVVIWDVAGVGE 197
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 135 bits (343), Expect = 2e-37
Identities = 56/208 (26%), Positives = 82/208 (39%), Gaps = 35/208 (16%)
Query: 153 PSSVAEKLKLGMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTC------ 206
V + PE R +TI FSDIVGFT +S V +LLN+
Sbjct: 12 SGLVPRGSHMR----PEP-RLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVF 66
Query: 207 -FDATINAYNVYKVETIGDAYMVVGGLPVRI--PDHADQIATMALDLL--------HHSG 255
T++ + +GDA M + G P + + + A +L
Sbjct: 67 ENQGTVDKF-------VGDAIMALYGAPEEMSPSEQVRRAIATARQMLVALEKLNQGWQE 119
Query: 256 RFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPR--YCLFGDTVNTASRLESTGAPWRIH 313
R + P+R R G+H G G+ G + R + G +VN A+RL+ AP I
Sbjct: 120 RGLVGRNEVPPVRFRCGIHQGMAVVGLFG-SQERSDFTAIGPSVNIAARLQEATAPNSIM 178
Query: 314 LSADTKAKLDQVGDYQLEYRGETELKGK 341
+SA V D ++ R ELKG
Sbjct: 179 VSAMVA---QYVPDEEIIKREFLELKGI 203
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 132 bits (334), Expect = 2e-36
Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 27/199 (13%)
Query: 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTC-------FDATINAYNVYKVETIGD 224
+++T++FSDI GFT +S + DLLN+ + TI+ + +GD
Sbjct: 8 KKLTVFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKF-------VGD 60
Query: 225 AYMVVGGLPV--RIPDHADQIATMALD----LLHHSGRFKIRHLPYTPLRLRIGLHTGPC 278
MV G P A +M + + +++ + + PL +R+G++TG C
Sbjct: 61 CVMVFFGDPSTQGAKKDAVAAVSMGIAMRKHMKVLRQQWRAQGIT-KPLEIRMGINTGYC 119
Query: 279 CAGVVGLTMPR--YCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGET 336
G G R Y + G VN ASRLES I +S +T + + +G+
Sbjct: 120 TVGNFG-ADTRMDYTIIGREVNLASRLESASEAGEILISHETYSLIK--DVIMCRDKGQI 176
Query: 337 ELKGKGK-MPTYWLLGKKG 354
+KG + + Y ++ +
Sbjct: 177 AVKGFSRPVQIYQVVDSRR 195
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis}
PDB: 1ybu_A*
Length = 184
Score = 129 bits (326), Expect = 2e-35
Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 24/183 (13%)
Query: 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGG 231
TI F+DIVG T +A DLL++ T I + +V T GD ++
Sbjct: 16 MLATIMFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFT 75
Query: 232 LPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYC 291
P A A D++ + +RIG+H G V
Sbjct: 76 SPSA----A---IACADDIVDAVAAL--------GIEVRIGIHAGEV---EVRDASHGTD 117
Query: 292 LFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGD--YQLEYRGETELKGK-GKMPTYW 348
+ G V+ +R+ + P + +S+ + D V ++ RGE ELKG G+
Sbjct: 118 VAGVAVHIGARVCALAGPSEVLVSSTVR---DIVAGSRHRFAERGEQELKGVPGRWRLCV 174
Query: 349 LLG 351
L+
Sbjct: 175 LMR 177
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family;
alpha-beta fold, structural genomics, PSI-2, protein
structu initiative; 2.60A {Ruegeria pomeroyi}
Length = 189
Score = 120 bits (304), Expect = 3e-32
Identities = 33/193 (17%), Positives = 61/193 (31%), Gaps = 15/193 (7%)
Query: 172 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGG 231
R I +D+ G++ + + + D I V+T GD +
Sbjct: 6 RLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFD 65
Query: 232 LPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYC 291
A AL++ + + ++ RIG++ G V+
Sbjct: 66 TAQA----A---LRCALEIQQAMQQREEDTPRKERIQYRIGINIGDI---VLE----DGD 111
Query: 292 LFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGK-GKMPTYWLL 350
+FGD VN A+RLE+ P I +S G ++K + + +
Sbjct: 112 IFGDAVNVAARLEAISEPGAICVSDIVHQITQDRVSEPFTDLGLQKVKNITRPIRVWQWV 171
Query: 351 GKKGFYKELPTPP 363
+ P
Sbjct: 172 PDADRDQSHDPQP 184
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain,
signaling helix, S-helix, CGMP biosynthesis, cytoplasm,
GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Length = 66
Score = 60.9 bits (148), Expect = 3e-12
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 113 DTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPSSVAEKLK 161
+ Q LE ++ L+ L+ EKKKT+ LL +LP SVA +L+
Sbjct: 20 YKLTQELEMLTDRLQ----LTLRALEDEKKKTDTLLYSVLPPSVANELR 64
Score = 52.0 bits (125), Expect = 4e-09
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 66 DTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPRKV 109
+ Q LE ++ L+ L+ EKKKT+ LL +LP V
Sbjct: 20 YKLTQELEMLTDRLQ----LTLRALEDEKKKTDTLLYSVLPPSV 59
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 5e-08
Identities = 79/526 (15%), Positives = 149/526 (28%), Gaps = 143/526 (27%)
Query: 14 DFNEVNDLFKTLNQGRGRGHLLLLSLRYKNPHLGLRLKSLLYI--DSPRKV--NFVDTMF 69
D +V D+ K++ H++ + L + ++ FV+ +
Sbjct: 34 DCKDVQDMPKSILSKEEIDHII------MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 70 QMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNNLEDL 129
+ Y L I+ Q + + + +R+ + D Q+ KY+
Sbjct: 88 R--INY-KFLMSPIKTEQRQPSMMTRMYIEQRDRL------YNDN--QVFAKYN------ 130
Query: 130 IRERTEQLDIEKKKTEQLLNRMLPSSVAEKLKL-GMP--------VDPEDFREVTIYFSD 180
R + ++ +L A+ + + G+ +D +V
Sbjct: 131 -VSRLQPYLKLRQALLEL-------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 181 IVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHA 240
+ + + ++P V+++L L D + DH+
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR----------------------SDHS 220
Query: 241 DQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRY--CLFG-DTV 297
I L HS + ++R L L Y CL V
Sbjct: 221 SNI-----KLRIHSIQAELRRL----------------------LKSKPYENCLLVLLNV 253
Query: 298 NTASRLESTGAPWRIHLSADTKAKLDQV-GDYQLEYRGETELKGKGKMPTYWLLGK--KG 354
A + +I L+ K D + + LL K
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 355 FYKELP----TPPPL-----GDS--HGLD--ENLILYGRTGPSTTID-----LSPTEAR- 395
++LP T P +S GL +N +T I+ L P E R
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 396 -----------SNHSSRSLQT--SPGPGRTSQEHAVQLHRSPRNNGKSQTQKTSQNKILS 442
++ + L +LH+ S +K + +S
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK------YSLVEKQPKESTIS 427
Query: 443 QI--LSLDSTMEDATRLSAHKKY--KYMKQNTFDS-CFYIDMRDGY 483
I + L+ ++ + H+ Y TFDS D Y
Sbjct: 428 -IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Score = 51.4 bits (122), Expect = 6e-07
Identities = 50/285 (17%), Positives = 89/285 (31%), Gaps = 66/285 (23%)
Query: 17 EVNDLF-KTLNQGRG-------RGHLLLLSLRYKNPHLGLRLKS-LLYIDSPRKVNFVDT 67
EV L K L+ + LS+ + ++ L D+ + VN D
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSI------IAESIRDGLATWDNWKHVNC-DK 354
Query: 68 MFQMLEKYSNNLE-DLIRERTEQLDI---EKKKTEQLLNRM-LPRKVNFVDTMFQMLEKY 122
+ ++E N LE R+ ++L + LL+ + + V + L KY
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 123 S----NNLEDLIRERTEQLDIEKKKTEQL-LNRMLPSSVAEKLKL---GMPVDPED---- 170
S E I + L+++ K + L+R + + D
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 171 ------------------FREVTIYFSDIVGF------TTISAYSTPFEVVDLLNDL--Y 204
FR V F D F +A++ +++ L L Y
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMV---FLDF-RFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 205 TCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHAD--QIATMA 247
+ + V I D + + + D +IA MA
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSK-YTDLLRIALMA 574
Score = 38.3 bits (88), Expect = 0.006
Identities = 31/162 (19%), Positives = 64/162 (39%), Gaps = 22/162 (13%)
Query: 5 WAEPPDMRPDFNEVNDLFKT--LNQGRGRG----HLLLLSLRYKNPHLGLRLKSLL--YI 56
W + VN L K + + + L L+ K + +S++ Y
Sbjct: 396 WFDVIKSDVM-VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY- 453
Query: 57 DSPRKVNFVDTMFQMLEKYSNN-----LEDLIRERTEQLDIEKKKTEQLLN-RMLPRKVN 110
+ P+ + D + L++Y + L+++ E E++ + + L+ R L +K+
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI--EHPERMTLFRMV---FLDFRFLEQKIR 508
Query: 111 FVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRML 152
T + N L+ L + D + K E+L+N +L
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKY-ERLVNAIL 549
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 1e-06
Identities = 49/235 (20%), Positives = 75/235 (31%), Gaps = 69/235 (29%)
Query: 126 LEDLIRERTEQLDIEKKKTEQLLN--RML-----PSSVA------EKLKLGMPVD----P 168
++D + + L K+ L+N + L P S+ K K +D P
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 169 EDFREVTIYFSDIVGFTTISAYSTPF------EVVDLLNDLYTCFDATINAYN----VYK 218
F E + FS F +++ PF DL+N + + NA + VY
Sbjct: 409 --FSERKLKFS--NRFLPVAS---PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 219 VETIGDAYMVVGGLPVRIPDHADQIATMALD--LLHHSGRFKIRHLPYTPLRLRIGLHTG 276
D ++ G + D I + + FK H+ L G
Sbjct: 462 TFDGSDLRVLSGSI---SERIVDCIIRLPVKWETTTQ---FKATHI----------LDFG 505
Query: 277 PCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADT--KAKLDQVGDYQ 329
P G GL L T + TG R+ + A T D G Q
Sbjct: 506 P--GGASGLG----VL------THRNKDGTGV--RV-IVAGTLDINPDDDYGFKQ 545
Score = 42.3 bits (99), Expect = 3e-04
Identities = 55/367 (14%), Positives = 108/367 (29%), Gaps = 121/367 (32%)
Query: 8 PPDMRPDFNEVNDLFKTLNQGRGRGHLLLLSLRYKNPHLGLRLKSLLYIDSPRKVNFVDT 67
+ + +L K R ++ + S L+ +
Sbjct: 109 LQENDTTLVKTKELIKNYITAR-----IMAKRPFDKKS-----NSALFRAVGEGNAQLVA 158
Query: 68 MF--Q-MLEKYSNNLEDLIRE--RTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKY 122
+F Q + Y E+L R+ +T + + + + + L +
Sbjct: 159 IFGGQGNTDDY---FEEL-RDLYQTYHVLVG----------------DLIKFSAETLSEL 198
Query: 123 SNNLEDLIRERTEQLDIEK--KKTE---------------------QLLNRMLPSSVAEK 159
D + T+ L+I + + QL + + V K
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV----VTAK 254
Query: 160 LKLGMPVDPEDFRE----VTIYFSDIVGFTTISA-------YSTPFEVVDLL-------N 201
L LG P + R T + +V I+ + + + + +L
Sbjct: 255 L-LGF--TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 202 DLY--TCFDATINAYNVYKVETIGDAYM-VVGGLP-VRIPDHADQIATMALDLLHHSGRF 257
+ Y T +I ++ E + + M + L ++ D+ ++ +
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGV-PSPMLSISNLTQEQVQDYVNKTNS------------ 358
Query: 258 KIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSAD 317
HLP ++ I L G V G P L+G +N L AP
Sbjct: 359 ---HLPAGK-QVEISLVNGAKNLVVSG---PPQSLYG--LNLT--LRKAKAP-------- 399
Query: 318 TKAKLDQ 324
+ LDQ
Sbjct: 400 --SGLDQ 404
Score = 28.1 bits (62), Expect = 7.9
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 15/49 (30%)
Query: 345 PT-YWLLG---KKGFYKELPTPPPLGDSHGLDENLILYGRTGPSTTIDL 389
PT + + ++ F K LP P + D+ P+T +L
Sbjct: 23 PTASFFIASQLQEQFNKILPEPT---EGFAADDE--------PTTPAEL 60
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 43.2 bits (101), Expect = 4e-05
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 27/76 (35%)
Query: 84 RERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKK 143
R+R ++LD K EQ + EK +LE+ + ++EQ +EK K
Sbjct: 95 RKRLQELDAASKVMEQ-----------------EWREKAKKDLEEWNQRQSEQ--VEKNK 135
Query: 144 TEQLLNRMLPSSVAEK 159
NR +A+K
Sbjct: 136 IN---NR-----IADK 143
Score = 32.8 bits (74), Expect = 0.16
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 70 QMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNR 103
+ EK +LE+ + ++EQ +EK K NR
Sbjct: 111 EWREKAKKDLEEWNQRQSEQ--VEKNKIN---NR 139
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal
transduction, GRB2, SHC, ATP-binding, glycoprotein,
membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Length = 373
Score = 37.8 bits (88), Expect = 0.006
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQGRGRGHLLLLSLRYKN 43
M +CW +MRP F+E+ + H + ++ Y N
Sbjct: 329 MLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHYVHVNATYVN 371
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain,
kinase, transferase-transferase inhibitor COM; HET: 42Q;
1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A*
3hng_A*
Length = 359
Score = 37.2 bits (86), Expect = 0.008
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M CW P RP F+E+ + L
Sbjct: 329 MLDCWHGEPSQRPTFSELVEHLGNL 353
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase;
HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A*
2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Length = 327
Score = 36.9 bits (86), Expect = 0.011
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
M QCW P+ RP+F + + + Q
Sbjct: 278 MTQCWQHQPEDRPNFAIILERIEYCTQ 304
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene
homolog; kinase, structure, inhibitor, STI-571, gleevec,
transferase activator; HET: STI; 1.60A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Length = 313
Score = 36.8 bits (86), Expect = 0.013
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M+ CW P RP F ++ L +
Sbjct: 281 MKTCWDADPLKRPTFKQIVQLIEKQ 305
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis,
nucleotide-binding, inhibitor, phosphorylation receptor,
transferase, transmembrane; HET: 00J; 1.50A {Homo
sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A*
3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A*
2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A*
3cpc_A* ...
Length = 316
Score = 36.5 bits (85), Expect = 0.013
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M CW P RP F+E+ + L
Sbjct: 284 MLDCWHGEPSQRPTFSELVEHLGNL 308
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET;
nucleotide-binding, hirschsprung disease,
phosphorylation, disease mutation; HET: ACK; 2.00A {Homo
sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A*
2ivv_A*
Length = 314
Score = 36.4 bits (85), Expect = 0.014
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M QCW + PD RP F +++ + +
Sbjct: 285 MLQCWKQEPDKRPVFADISKDLEKM 309
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding,
glycoprotein, membrane, nucleotide-binding,
phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Length = 367
Score = 36.6 bits (85), Expect = 0.014
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
M QCW P+ RP+F + + + Q
Sbjct: 319 MTQCWQHQPEDRPNFAIILERIEYCTQ 345
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 36.5 bits (85), Expect = 0.015
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
M QCWA P RP F+ + +++ +
Sbjct: 348 MEQCWAYEPGQRPSFSTIYQELQSIRK 374
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition,
juxtamembrane domain, transferase; 2.10A {Homo sapiens}
SCOP: d.144.1.7
Length = 344
Score = 36.5 bits (85), Expect = 0.015
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M+ CWA RP F +
Sbjct: 308 MQSCWAFDSRKRPSFPNLTSFLGCQ 332
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain,
transferase, transferase-transferase inhibito; HET: 07J;
2.80A {Homo sapiens}
Length = 382
Score = 36.6 bits (85), Expect = 0.015
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
MR CW P RP F ++ + +
Sbjct: 326 MRDCWHAVPSQRPTFKQLVEDLDRI 350
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding,
nucleotide serine/threonine-protein kinase, transferase,
signaling Pro; HET: ACP; 1.80A {Dictyostelium
discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Length = 287
Score = 36.1 bits (84), Expect = 0.016
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
+ CW+ P RP F+ + L
Sbjct: 263 IELCWSGDPKKRPHFSYIVKELSEL 287
>3v5q_A NT-3 growth factor receptor; kinase domain, kinase,
phosphorylation, transferase-transfer inhibitor complex;
HET: 0F4; 2.20A {Homo sapiens}
Length = 297
Score = 36.1 bits (84), Expect = 0.017
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQG 28
M CW P R + E+ + L +
Sbjct: 268 MLGCWQREPQQRLNIKEIYKILHALGKA 295
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation,
cancer, PAN inhibitor, ATP-binding nucleotide-binding,
phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo
sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A*
Length = 318
Score = 36.2 bits (84), Expect = 0.019
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M+ CW RP F + + KT+
Sbjct: 284 MKNCWETEASFRPTFENLIPILKTV 308
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain,
kinase inhibitor complex, transferase; HET: 5CN; 1.80A
{Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A*
3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Length = 333
Score = 36.1 bits (84), Expect = 0.020
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M+ CWA P RP F ++ +
Sbjct: 300 MQACWALEPTHRPTFQQICSFLQEQ 324
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2,
phosphorylation, transferase; HET: STU; 2.50A
{Arabidopsis thaliana} PDB: 3ppz_A*
Length = 309
Score = 36.1 bits (84), Expect = 0.021
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
+ CW P RP F + DL + L +
Sbjct: 272 IEGCWTNEPWKRPSFATIMDLLRPLIK 298
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor;
HET: V4Z; 2.75A {Homo sapiens}
Length = 329
Score = 36.1 bits (84), Expect = 0.022
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P R +V+ + L Q
Sbjct: 293 MRGCWQREPQQRHSIKDVHARLQALAQ 319
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage
kinase, MLK family, MLK1 and MLK3 subtype selective
inhibitors; HET: VIN; 2.60A {Homo sapiens}
Length = 271
Score = 35.7 bits (83), Expect = 0.023
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 1 MRQCWAEPPDMRPDFNEV 18
M CW P RP F +
Sbjct: 247 MEDCWNPDPHSRPSFTNI 264
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation,
signal transduction, MASS spectrometry, transferase;
2.05A {Rattus norvegicus} SCOP: d.144.1.7
Length = 343
Score = 35.8 bits (83), Expect = 0.023
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
MR CW++ P RP F ++ + + +
Sbjct: 309 MRLCWSKLPADRPSFCSIHRILQRM 333
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat,
ATP-binding, cell junction, cell membrane,
integrin-binding protein, membrane, nucleotide- binding;
1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A*
Length = 271
Score = 35.7 bits (83), Expect = 0.024
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M+ C E P RP F+ + + + +
Sbjct: 244 MKICMNEDPAKRPKFDMIVPILEKM 268
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting
of N- and C-lobes, transferase; HET: PTR ACP; 1.80A
{Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A*
2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A*
3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A*
3js2_A* 3ky2_A ...
Length = 334
Score = 35.7 bits (83), Expect = 0.025
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
MR CW P RP F ++ + +
Sbjct: 292 MRDCWHAVPSQRPTFKQLVEDLDRI 316
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A
{Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A*
2p4i_A* 3l8p_A* 2wqb_A*
Length = 327
Score = 35.7 bits (83), Expect = 0.025
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
MRQCW E P RP F ++ +
Sbjct: 274 MRQCWREKPYERPSFAQILVSLNRM 298
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET:
ATP; 3.46A {Homo sapiens}
Length = 319
Score = 35.8 bits (83), Expect = 0.025
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
+ CWA + RP F ++ D+ + L
Sbjct: 276 LLFCWAFEQEERPTFTKLMDMLEKL 300
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase
activator complex; HET: ADN; 2.00A {Homo sapiens}
Length = 307
Score = 35.8 bits (83), Expect = 0.026
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M +CW++ P RP E+ + L
Sbjct: 237 MTRCWSKDPSQRPSMEEIVKIMTHL 261
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain,
transferase-transferase inhibit complex; HET: PTR 0NT;
1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A*
3eyh_A*
Length = 302
Score = 35.4 bits (82), Expect = 0.031
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
MR+CW P R F + + F+ L
Sbjct: 276 MRKCWEFQPSNRTSFQNLIEGFEAL 300
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase
domain, hormone-growth factor complex; 1.50A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A*
1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A*
3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A*
1gag_A* 1irk_A 3bu3_A* ...
Length = 322
Score = 35.3 bits (82), Expect = 0.031
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
MR CW P MRP F E+ K
Sbjct: 273 MRMCWQYNPKMRPSFLEIISSIKEE 297
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase,
transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A*
3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A*
3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A*
2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A*
Length = 289
Score = 35.3 bits (82), Expect = 0.035
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M +C + D RP F + + L
Sbjct: 262 MAECLKKKRDERPSFPRILAEIEEL 286
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 35.5 bits (82), Expect = 0.035
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR CW P RP F E++ F+T+ Q
Sbjct: 452 MRACWQWNPSDRPSFAEIHQAFETMFQ 478
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN
inhibitor, ATP-binding mutation, membrane,
nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A
{Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A*
Length = 327
Score = 35.4 bits (82), Expect = 0.037
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M+ CWA P RP F+ + L
Sbjct: 277 MKLCWAPSPQDRPSFSALGPQLDML 301
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor,
receptor tyrosine kinase, spirocyc kinase domain,
phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus
musculus}
Length = 323
Score = 35.0 bits (81), Expect = 0.039
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M QCW+ P RP F + + +
Sbjct: 272 MYQCWSADPKQRPSFTCLRMELENI 296
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 35.4 bits (82), Expect = 0.040
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
M+ CW RP F ++ + + +
Sbjct: 419 MKNCWHLDAATRPTFLQLREQLEHIRT 445
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting
of N- and C-lobes, transferase; 2.40A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1xr0_A
Length = 370
Score = 35.4 bits (82), Expect = 0.040
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
MR CW P RP F ++ + +
Sbjct: 338 MRDCWHAVPSQRPTFKQLVEDLDRI 362
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding,
tyrosine-protein kinase, proto-oncogene, phosphoprotein,
disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo
sapiens}
Length = 326
Score = 35.0 bits (81), Expect = 0.041
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M +CW + RP F ++ +
Sbjct: 296 MTECWNNNVNQRPSFRDLALRVDQI 320
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase,
quinoxaline, alternative splicing, ATP-binding,
chromosomal rearrangement; HET: IHX; 1.40A {Homo
sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A*
2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A*
2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A*
3ctj_A* ...
Length = 298
Score = 34.9 bits (81), Expect = 0.041
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M +CW +MRP F+E+ +
Sbjct: 265 MLKCWHPKAEMRPSFSELVSRISAI 289
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 35.2 bits (81), Expect = 0.042
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M QCW + P+ RP F + +
Sbjct: 497 MCQCWRKEPEERPTFEYLQAFLEDY 521
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 35.1 bits (81), Expect = 0.043
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M QCW + P+ RP F + +
Sbjct: 414 MCQCWRKEPEERPTFEYLQAFLEDY 438
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP
binding, transferase-transfera inhibitor complex; HET:
046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A*
3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A*
3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A*
Length = 295
Score = 35.0 bits (81), Expect = 0.043
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M +CW + RP F ++ +
Sbjct: 265 MTECWNNNVNQRPSFRDLALRVDQI 289
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase,
phosphorylation, staurosporine, transferase; HET: STU;
2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Length = 278
Score = 34.9 bits (81), Expect = 0.047
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M+ CW MRP F ++ + + +
Sbjct: 247 MKNCWHLDAAMRPSFLQLREQLEHI 271
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase
domain, multitargeted small M kinase inhibitor; HET:
ITI; 2.70A {Homo sapiens}
Length = 327
Score = 34.9 bits (81), Expect = 0.049
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
MR+CW D RP F E+ F +
Sbjct: 252 MRKCWMIDADSRPKFRELIIEFSKM 276
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 35.3 bits (80), Expect = 0.049
Identities = 20/114 (17%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 55 YIDSPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRM------LPRK 108
Y + PRK + + Q K ++ D I + + L ++K+ E +
Sbjct: 447 YYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKML 506
Query: 109 VNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPSSVAEKLKL 162
QM+E+ + ++ +++ TE+++ ++ + + R L + E+ +L
Sbjct: 507 HEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQL 560
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET:
ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A*
2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A*
2jko_A* 2jkk_A*
Length = 281
Score = 34.5 bits (80), Expect = 0.056
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M +CWA P RP F E+ T+
Sbjct: 250 MTKCWAYDPSRRPRFTELKAQLSTI 274
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase
inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB:
3sxr_A*
Length = 268
Score = 34.5 bits (80), Expect = 0.058
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M CW E P+ RP F ++ + L
Sbjct: 238 MYSCWHELPEKRPTFQQLLSSIEPL 262
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase,
integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB:
2j0k_A*
Length = 656
Score = 34.8 bits (80), Expect = 0.065
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M +CWA P RP F E+ T+
Sbjct: 625 MTKCWAYDPSRRPRFTELKAQLSTI 649
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase,
ATP binding, phosphoryla transferase; HET: ATP; 1.75A
{Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Length = 289
Score = 34.2 bits (79), Expect = 0.068
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
+ C PD RP F + +L
Sbjct: 249 INNCMDYEPDHRPSFRAIIRDLNSL 273
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease
mutation, glycoprotein, nucleot binding,
phosphorylation, receptor; HET: ADP; 1.90A {Homo
sapiens} PDB: 3bpr_A* 2p0c_A*
Length = 313
Score = 34.2 bits (79), Expect = 0.070
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 1 MRQCWAEPPDMRPDFNEV 18
M CW P RP F+ +
Sbjct: 282 MYSCWRTDPLDRPTFSVL 299
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS
autophosphorylation conformation, recept tyrosine
kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo
sapiens}
Length = 298
Score = 34.2 bits (79), Expect = 0.071
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M+QCW P +RP F + + +
Sbjct: 261 MQQCWEADPAVRPTFRVLVGEVEQI 285
>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase,
neurotrophic tyrosine kinase, receptor-related NTRKR2;
2.90A {Homo sapiens}
Length = 289
Score = 34.1 bits (79), Expect = 0.077
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKT 24
M +CW E P RP F +++ +
Sbjct: 263 MIECWNEFPSRRPRFKDIHSRLRA 286
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain,
alternative splicing, ATP-binding, disease MU kinase,
metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Length = 307
Score = 34.2 bits (79), Expect = 0.080
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
+ C + + RP F ++ + L
Sbjct: 274 VADCVKKVKEERPLFPQILSSIELL 298
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural
genomics, structural genom consortium, SGC, ATP-binding,
membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A
3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Length = 281
Score = 34.1 bits (79), Expect = 0.082
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M +CW P RP F E+ +
Sbjct: 247 MTRCWDYDPSDRPRFTELVCSLSDV 271
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding,
transfera phosphorylation, transmembrane,
tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Length = 325
Score = 34.2 bits (79), Expect = 0.084
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M CW + RP F+++ + L
Sbjct: 287 MLDCWHKDRAQRPRFSQIVSVLDAL 311
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo
sapiens} SCOP: d.144.1.7
Length = 287
Score = 34.1 bits (79), Expect = 0.087
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M CW + RPDF V +
Sbjct: 246 MSDCWIYKWEDRPDFLTVEQRMRAC 270
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen
typrosine kinase, active conformation, structural
genomics, structural genomix; HET: STI; 1.57A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A*
3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A*
3vf9_A*
Length = 291
Score = 34.2 bits (79), Expect = 0.088
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M CW + RP F V +
Sbjct: 253 MNLCWTYDVENRPGFAAVELRLRNY 277
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase;
HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Length = 333
Score = 33.8 bits (78), Expect = 0.091
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M QCW + RP F ++ + L
Sbjct: 283 MMQCWQQERARRPKFADIVSILDKL 307
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 34.3 bits (79), Expect = 0.094
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M +CW P+ RP F + +
Sbjct: 418 MMRCWKNRPEERPTFEYIQSVLDDF 442
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive
kinase, HER3, ATP-binding, cell membrane, membrane,
nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB:
3lmg_A*
Length = 325
Score = 33.8 bits (78), Expect = 0.095
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
M +CW ++RP F E+ + F + +
Sbjct: 250 MVKCWMIDENIRPTFKELANEFTRMAR 276
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase;
2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A*
1u54_A* 3eqr_A* 3eqp_B*
Length = 291
Score = 33.8 bits (78), Expect = 0.095
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLN 26
M QCWA P+ RP F + D
Sbjct: 258 MVQCWAHKPEDRPTFVALRDFLLEAQ 283
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene,
ATP-binding, cell cycle, disea mutation, glycoprotein,
membrane, nucleotide-binding; HET: 03P; 1.50A {Homo
sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A*
1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A*
2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A*
2jiu_A* ...
Length = 327
Score = 33.8 bits (78), Expect = 0.097
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M +CW D RP F E+ F +
Sbjct: 252 MVKCWMIDADSRPKFRELIIEFSKM 276
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor,
ATP-binding, nucleotide-binding, oncogene, TRAN; HET:
B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A*
1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A*
3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A*
3oy3_A* 2hiw_A* 2v7a_A* ...
Length = 288
Score = 33.8 bits (78), Expect = 0.099
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
MR CW P RP F E++ F+T+
Sbjct: 245 MRACWQWNPSDRPSFAEIHQAFETM 269
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP
binding, phosphorylation, intracellular,
transferase-transferase inhibitor complex; HET: IAQ;
1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A*
3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A*
3mj1_A* 3mj2_A*
Length = 267
Score = 33.7 bits (78), Expect = 0.10
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M CW E P+ RP F+ + +
Sbjct: 238 MNHCWRERPEDRPAFSRLLRQLAEI 262
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A*
3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A*
3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A*
3ad6_A* 3kmm_A* 1qpd_A* ...
Length = 279
Score = 33.7 bits (78), Expect = 0.10
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
MR CW E P+ RP F+ + + +
Sbjct: 243 MRLCWKERPEDRPTFDYLRSVLEDF 267
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural
genomics consortium, SGC, PR kinase,
transferase-antibiotic complex; HET: STU GOL; 1.65A
{Homo sapiens}
Length = 310
Score = 33.8 bits (78), Expect = 0.11
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
+C P+ RP F ++ +TL
Sbjct: 256 TVRCCDLDPEKRPSFVKLEHWLETL 280
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 34.2 bits (78), Expect = 0.12
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M CW + RPDF V +
Sbjct: 572 MSDCWIYKWEDRPDFLTVEQRMRAC 596
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment,
structural genomics, mutant, structural genomics
consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB:
2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A
2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A*
2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Length = 373
Score = 33.1 bits (76), Expect = 0.18
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M CW + + RP F ++ + L
Sbjct: 283 MLDCWQKDRNNRPKFEQIVSILDKL 307
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase,
4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3,
2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43;
1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A*
3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A*
1k2p_A
Length = 283
Score = 33.0 bits (76), Expect = 0.20
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTL 25
M CW E D RP F + +
Sbjct: 254 MYSCWHEKADERPTFKILLSNILDV 278
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline,
aortic aneurysm, ATP-binding, craniosynostosis, disease
mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens}
PDB: 1vjy_A* 3gxl_A* 3hmm_A* 2wot_A* 2wou_A* 1py5_A*
1rw8_A*
Length = 303
Score = 32.7 bits (75), Expect = 0.22
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR+CW R + L+Q
Sbjct: 271 MRECWYANGAARLTALRIKKTLSQLSQ 297
>3mdy_A Bone morphogenetic protein receptor type-1B; complex
(isomerase-protein kinase), receptor serine/threonin
structural genomics consortium, SGC; HET: LDN; 2.05A
{Homo sapiens}
Length = 337
Score = 32.8 bits (75), Expect = 0.24
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
M +CWA P R V +++
Sbjct: 305 MTECWAHNPASRLTALRVKKTLAKMSE 331
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC,
protein kinase, transfe; HET: LDN FLC; 1.82A {Homo
sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Length = 301
Score = 32.3 bits (74), Expect = 0.28
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLN 26
M++CW + P R + ++
Sbjct: 276 MKECWYQNPSARLTALRIKKTLTKID 301
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein
kinase), receptor serine/threonine kinase; 2.60A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A*
3kcf_A*
Length = 342
Score = 32.4 bits (74), Expect = 0.30
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
MR+CW R + L+Q
Sbjct: 310 MRECWYANGAARLTALRIKKTLSQLSQ 336
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 30.7 bits (69), Expect = 0.63
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 70 QMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNR---------MLPRKVNFVDTMFQMLE 120
++ E S LE+ ++ T L + + E+ + +L K+ +T + E
Sbjct: 38 ELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAE 97
Query: 121 KYSNNLEDLIRERTEQLDIEKKKTEQLLNRM 151
+ LE I + ++L +K K + + M
Sbjct: 98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEM 128
Score = 28.8 bits (64), Expect = 2.7
Identities = 17/106 (16%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 60 RKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQML 119
++ V + LE + + E++ + K ++ R F + L
Sbjct: 49 EELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETR-----AEFAERSVTKL 103
Query: 120 EKYSNNLEDLI---RERTEQLDIEKKKTEQLLNRMLPSSVAEKLKL 162
EK ++LED + + + + + E K+ E + +L + + ++
Sbjct: 104 EKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEV 149
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 31.2 bits (71), Expect = 0.84
Identities = 12/93 (12%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 70 QMLEKYSNNLEDLIRERTEQLDI---EKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNNL 126
+ +L++ I + ++L EKK E+ ++ + + L++ + L
Sbjct: 980 KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE----TEQLVSELKEQNTLL 1035
Query: 127 EDLIRERTEQLDIEKKKTEQLLNRMLPSSVAEK 159
+ E ++ + K+ + + + L +
Sbjct: 1036 KTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A
{Homo sapiens}
Length = 273
Score = 30.1 bits (67), Expect = 1.4
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 65 VDTMFQMLEKYSNNLEDLIRERTEQLDIE-KKKTEQLLNRMLPRKVNFVDTMFQMLEKYS 123
+ L L +++ E+L E+L R+ P + + E
Sbjct: 145 AQDTQEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQ 204
Query: 124 NNLEDLIRERTEQLDIEKKKTEQLLNRM 151
+L +L +Q++ +++ E
Sbjct: 205 KSLAELGGHLDQQVEEFRRRVEPYGENF 232
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC,
transferase, protein KI; HET: GVD; 1.95A {Homo sapiens}
PDB: 3q4t_A* 2qlu_A*
Length = 322
Score = 30.1 bits (68), Expect = 1.5
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 1 MRQCWAEPPDMRPDFNEVNDLFKTLNQ 27
+ +CW + R V + + +
Sbjct: 292 IEECWDHDAEARLSAGCVGERITQMQR 318
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 30.6 bits (69), Expect = 1.6
Identities = 14/94 (14%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Query: 60 RKVNFVDTMFQMLEKYSNNLEDLI-RERTEQLDIEKKKTE-QLLNRMLPRKVNFVDTMFQ 117
K + + E + LE + +E + ++EK K + + + L ++ +
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084
Query: 118 MLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRM 151
L+ E+ ++ +L+ E + L ++
Sbjct: 1085 ELKAQLAKKEEELQAALARLEDETSQKNNALKKI 1118
Score = 30.2 bits (68), Expect = 1.8
Identities = 14/92 (15%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 68 MFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRM---------LPRKVNFVDTMFQM 118
M L LE+++ E +++ E+++++QL L ++ + Q
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Query: 119 LEKYSNNLEDLIRERTEQLDIEKKKTEQLLNR 150
L+ + I++ + + I + + +L
Sbjct: 974 LQLEKVTADGKIKKMEDDILIMEDQNNKLTKE 1005
Score = 29.8 bits (67), Expect = 2.8
Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 70 QMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNNLEDL 129
++K +++ + ++ +L E+K E+ ++ L + + + L K N E +
Sbjct: 983 GKIKKMEDDILIM-EDQNNKLTKERKLLEERVS-DLTTNLAEEEEKAKNLTKLKNKHESM 1040
Query: 130 IRERTEQLDIEKKKTEQLLNR 150
I E +L E+K ++L
Sbjct: 1041 ISELEVRLKKEEKSRQELEKI 1061
Score = 28.6 bits (64), Expect = 6.6
Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 72 LEKYSNNLEDLIRERTEQLDIEKKKTEQLLN---------RMLPRKVNFVDTMFQMLEKY 122
L+ ++ + + EQL+ E+ ++L + + + ++ L K
Sbjct: 946 LQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE 1005
Query: 123 SNNLEDLIRERTEQLDIEKKKTEQL 147
LE+ + + T L E++K + L
Sbjct: 1006 RKLLEERVSDLTTNLAEEEEKAKNL 1030
Score = 27.9 bits (62), Expect = 9.6
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 4/96 (4%)
Query: 68 MFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRM--LPRKVNFVDTMFQMLEKYSNN 125
E+ + + T Q + KK +L + + L + EK +
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148
Query: 126 LEDLIRERTEQLDIEKKKTEQL--LNRMLPSSVAEK 159
L + + +L+ T L +K
Sbjct: 1149 LSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 29.9 bits (68), Expect = 2.3
Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 17/110 (15%)
Query: 78 NLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNNL-------EDLI 130
L+ + K E + F+ + L + ++ D +
Sbjct: 152 ETSMLLGAQKPLSQAVKLMLEGITASRNTL-AKFLPGKRKQLREVRESIRFLRQVGRDWV 210
Query: 131 RERTEQLDIEKKKTEQLLNRMLPSSVAEKLKLGMPVDPEDFRE--VTIYF 178
+ R E L ++ +L ++L + D E + VT +
Sbjct: 211 QRRREALKRGEEVPADILTQILKAEEGA-------QDDEGLLDNFVTFFI 253
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix,
PSI, protein structure INI midwest center for structural
genomics; 1.60A {Staphylococcus aureus subsp} SCOP:
a.24.27.1
Length = 199
Score = 29.1 bits (64), Expect = 2.3
Identities = 11/85 (12%), Positives = 32/85 (37%)
Query: 66 DTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNN 125
+ K +L +R ++ + E+ ++ K + + + K
Sbjct: 58 SKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVKRKEVKQ 117
Query: 126 LEDLIRERTEQLDIEKKKTEQLLNR 150
L+D+++E+ + K ++ +N
Sbjct: 118 LDDVLKEKYKLHSDYAKAYKKAVNS 142
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 29.6 bits (66), Expect = 2.4
Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 72 LEKYSNNLEDL------IRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNN 125
++ +NNL+ L ++ ++ + E K L + + F + LEK ++
Sbjct: 197 IKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKL-KEAETRAEFAERSVTKLEKSIDD 255
Query: 126 LEDLIRERTEQLDIEKKKTEQLLNRM 151
LED + + + ++ + LN M
Sbjct: 256 LEDELYAQKLKYKAISEELDHALNDM 281
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural
genomics, structural genomics consortium, ATP-binding,
disease mutation; HET: ADP; 2.35A {Homo sapiens}
Length = 336
Score = 29.0 bits (65), Expect = 3.2
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 1 MRQCWAEPPDMRPDFNEV 18
+ CW + + R
Sbjct: 292 IEDCWDQDAEARLTAQXA 309
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand,
voltage-gated sodium channel regulation, CTD binds to
FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens}
PDB: 2kbi_A
Length = 168
Score = 28.5 bits (63), Expect = 3.7
Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 5/85 (5%)
Query: 39 LRYKNPHLGLRLKSLLYIDSPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTE 98
LR P+ + L + S +++ +D +F ++ ++ + L I+ ++
Sbjct: 53 LRIAKPNQISLINMDLPMVSGDRIHCMDILFAFTKRVLGESGEM-----DALKIQMEEKF 107
Query: 99 QLLNRMLPRKVNFVDTMFQMLEKYS 123
N T+ + E+ S
Sbjct: 108 MAANPSKISYEPITTTLRRKHEEVS 132
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima}
SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A
1zkg_A* 2iek_A* 1z77_A*
Length = 202
Score = 28.6 bits (64), Expect = 4.1
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 4/98 (4%)
Query: 79 LEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLD 138
+E I ++ E + L ++ + LEK D +RE+ + LD
Sbjct: 84 MERWIEKKLE-YSASHPEEADFLITLVSVDEGLRKRILLDLEKSQRVFFDFVREKLKDLD 142
Query: 139 IEKKKTEQLLNRMLPSSV---AEKLKLGMPVDPEDFRE 173
+ + TE++ + L E PE +
Sbjct: 143 LAEDVTEEIALKFLMWFFSGFEEVYLRTYQGKPELLKR 180
Score = 28.2 bits (63), Expect = 5.2
Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 37 LSLRYKNPHLGLRLKSLLYIDSPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKK 96
L +P L +L+ +D + + LEK D +RE+ + LD+ +
Sbjct: 92 LEYSASHPEEADFLITLVSVDEGLR----KRILLDLEKSQRVFFDFVREKLKDLDLAEDV 147
Query: 97 TEQLLNRMLPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRML 152
TE++ + L + F ++ + +L++ L ++ + +L +
Sbjct: 148 TEEIALKFL---MWFFSGFEEVYLRTYQGKPELLKRDMNTL---VEEVKVMLRILK 197
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 28.3 bits (62), Expect = 7.8
Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 2/94 (2%)
Query: 60 RKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQML 119
+ + V Q LE+ +E+L + + K++ + + + Q L
Sbjct: 20 QHLQDVRKRVQDLEQKMKVVENLQDDFDFN--YKTLKSQGDMQDLNGNNQSVTRQKMQQL 77
Query: 120 EKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLP 153
E+ L+ + R +L E + +
Sbjct: 78 EQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTD 111
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 26.8 bits (59), Expect = 9.1
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 72 LEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNNLEDLIR 131
LEK ++L E+ L EK + + + + L K LE ++
Sbjct: 29 LEKSEARRKEL-EEKMVSLLQEKNDLQLQVQ-AEQDNLADAEERCDQLIKNKIQLEAKVK 86
Query: 132 ERTEQLDIEKKKTEQLLN 149
E ++L+ E++ +L
Sbjct: 87 EMNKRLEDEEEMNAELTA 104
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 9.8
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 140 EK---KKTEQLLNRMLPSSVAEKLKLGMPVD 167
EK KK + L S A L + ++
Sbjct: 18 EKQALKKLQASLKLYADDS-APALAIKATME 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.399
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,409,416
Number of extensions: 447035
Number of successful extensions: 1221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1156
Number of HSP's successfully gapped: 125
Length of query: 487
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 390
Effective length of database: 3,993,456
Effective search space: 1557447840
Effective search space used: 1557447840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)