BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13821
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 88/162 (54%), Gaps = 8/162 (4%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIK--LDWTFRLSLLTDLV 113
++ LRH N+ F+G + P ++V E+ RGSL +L + + LD RLS+ D+
Sbjct: 88 MKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVA 147
Query: 114 RGMRYLHS-VPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWT 172
+GM YLH+ P +H NL S N ++D ++ +K+ D+ L S A + A W
Sbjct: 148 KGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGL-SRLKASTFLSSKSAAGTPEWM 206
Query: 173 APELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNP 214
APE+LRDE ++ DVYSFG+I+ E+ NLNP
Sbjct: 207 APEVLRDEP----SNEKSDVYSFGVILWELATLQQPWGNLNP 244
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 46/162 (28%)
Query: 202 VVLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIK--LDWTFRLSLLTD 259
+++ LRH N+ F+G + P ++V E+ RGSL +L + + LD RLS+ D
Sbjct: 86 AIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYD 145
Query: 260 LVRGMRYLHS-VPHRLHELL---------------------------------------W 279
+ +GM YLH+ P +H L W
Sbjct: 146 VAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEW 205
Query: 280 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCMLS 321
APE+LRDE ++ DVYSFG+I+ E+ +P+ L+
Sbjct: 206 MAPEVLRDEP----SNEKSDVYSFGVILWELATLQQPWGNLN 243
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 8/162 (4%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIK--LDWTFRLSLLTDLV 113
++ LRH N+ F+G + P ++V E+ RGSL +L + + LD RLS+ D+
Sbjct: 88 MKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVA 147
Query: 114 RGMRYLHS-VPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWT 172
+GM YLH+ P +H +L S N ++D ++ +K+ D+ L S A + A W
Sbjct: 148 KGMNYLHNRNPPIVHRDLKSPNLLVDKKYTVKVCDFGL-SRLKASXFLXSKXAAGTPEWM 206
Query: 173 APELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNP 214
APE+LRDE ++ DVYSFG+I+ E+ NLNP
Sbjct: 207 APEVLRDEP----SNEKSDVYSFGVILWELATLQQPWGNLNP 244
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 46/162 (28%)
Query: 202 VVLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIK--LDWTFRLSLLTD 259
+++ LRH N+ F+G + P ++V E+ RGSL +L + + LD RLS+ D
Sbjct: 86 AIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYD 145
Query: 260 LVRGMRYLHS-VPHRLHELL---------------------------------------W 279
+ +GM YLH+ P +H L W
Sbjct: 146 VAKGMNYLHNRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASXFLXSKXAAGTPEW 205
Query: 280 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCMLS 321
APE+LRDE ++ DVYSFG+I+ E+ +P+ L+
Sbjct: 206 MAPEVLRDEP----SNEKSDVYSFGVILWELATLQQPWGNLN 243
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRG 115
++ L H N+ FIG L+ + E+ G+L ++ + + W+ R+S D+ G
Sbjct: 61 MRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASG 120
Query: 116 MRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-------------R 162
M YLHS+ + +H +L S NC++ + + D+ L + P R
Sbjct: 121 MAYLHSM-NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKR 179
Query: 163 QKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
W APE++ ++ + DV+SFGI++ E++
Sbjct: 180 YTVVGNPYWMAPEMINGRSY----DEKVDVFSFGIVLCEII 216
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 198 IIQEV-VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSL 256
++EV V++ L H N+ FIG L+ + E+ G+L ++ + + W+ R+S
Sbjct: 54 FLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSF 113
Query: 257 LTDLVRGMRYLHSVPHRLHELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEP 316
D+ GM YLHS+ + +H L + L+R+ + + V FG+ V + +P
Sbjct: 114 AKDIASGMAYLHSM-NIIHRDLNSHNCLVRENKNVV-------VADFGLARLMVDEKTQP 165
Query: 317 FCMLSLTPEGKLVRHTPQAVP 337
+ SL + R+T P
Sbjct: 166 EGLRSLKKPDRKKRYTVVGNP 186
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 11/166 (6%)
Query: 42 TIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL--VQDEIK 99
T ELK + + + +HENL +GF D LV+ + GSL D L +
Sbjct: 70 TEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPP 129
Query: 100 LDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD--AQ 157
L W R + G+ +LH H +H ++ S N ++D + KI+D+ L + AQ
Sbjct: 130 LSWHMRCKIAQGAANGINFLHE-NHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQ 188
Query: 158 NIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ + + APE LR E + D+YSFG+++ E++
Sbjct: 189 TV-MXSRIVGTTAYMAPEALRGEI-----TPKSDIYSFGVVLLEII 228
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 42/153 (27%)
Query: 200 QEV-VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL--VQDEIKLDWTFRLSL 256
QE+ V+ +HENL +GF D LV+ + GSL D L + L W R +
Sbjct: 79 QEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKI 138
Query: 257 LTDLVRGMRYLHSVPHRLHELLWTAPELLRDEA--------------------------- 289
G+ +LH H +H + +A +L DEA
Sbjct: 139 AQGAANGINFLHE-NHHIHRDIKSA-NILLDEAFTAKISDFGLARASEKFAQTVMXSRIV 196
Query: 290 --------HRLRG--SQPGDVYSFGIIIQEVVV 312
LRG + D+YSFG+++ E++
Sbjct: 197 GTTAYMAPEALRGEITPKSDIYSFGVVLLEIIT 229
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 11/166 (6%)
Query: 42 TIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL--VQDEIK 99
T ELK + + + +HENL +GF D LV+ + GSL D L +
Sbjct: 70 TEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPP 129
Query: 100 LDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD--AQ 157
L W R + G+ +LH H +H ++ S N ++D + KI+D+ L + AQ
Sbjct: 130 LSWHMRCKIAQGAANGINFLHE-NHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQ 188
Query: 158 NIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ + + APE LR E + D+YSFG+++ E++
Sbjct: 189 TV-MXXRIVGTTAYMAPEALRGEI-----TPKSDIYSFGVVLLEII 228
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 42/153 (27%)
Query: 200 QEV-VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL--VQDEIKLDWTFRLSL 256
QE+ V+ +HENL +GF D LV+ + GSL D L + L W R +
Sbjct: 79 QEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKI 138
Query: 257 LTDLVRGMRYLHSVPHRLHELLWTAPELLRDEA--------------------------- 289
G+ +LH H +H + +A +L DEA
Sbjct: 139 AQGAANGINFLHE-NHHIHRDIKSA-NILLDEAFTAKISDFGLARASEKFAQTVMXXRIV 196
Query: 290 --------HRLRG--SQPGDVYSFGIIIQEVVV 312
LRG + D+YSFG+++ E++
Sbjct: 197 GTTAYMAPEALRGEITPKSDIYSFGVVLLEIIT 229
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 11/166 (6%)
Query: 42 TIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL--VQDEIK 99
T ELK + + + +HENL +GF D LV+ + GSL D L +
Sbjct: 64 TEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPP 123
Query: 100 LDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD--AQ 157
L W R + G+ +LH H +H ++ S N ++D + KI+D+ L + AQ
Sbjct: 124 LSWHMRCKIAQGAANGINFLHE-NHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQ 182
Query: 158 NIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ + + APE LR E + D+YSFG+++ E++
Sbjct: 183 XV-MXXRIVGTTAYMAPEALRGEI-----TPKSDIYSFGVVLLEII 222
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 42/153 (27%)
Query: 200 QEV-VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL--VQDEIKLDWTFRLSL 256
QE+ V+ +HENL +GF D LV+ + GSL D L + L W R +
Sbjct: 73 QEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKI 132
Query: 257 LTDLVRGMRYLHSVPHRLHELLWTAPELLRDEA--------------------------- 289
G+ +LH H +H + +A +L DEA
Sbjct: 133 AQGAANGINFLHE-NHHIHRDIKSA-NILLDEAFTAKISDFGLARASEKFAQXVMXXRIV 190
Query: 290 --------HRLRG--SQPGDVYSFGIIIQEVVV 312
LRG + D+YSFG+++ E++
Sbjct: 191 GTTAYMAPEALRGEITPKSDIYSFGVVLLEIIT 223
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 10/176 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
TI+ S S D ++ + L H L G + LV+EF G L D L
Sbjct: 57 KTIKEGSMSEDDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQ 116
Query: 97 EIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDA 156
L + D+ GM YL +H +L +RNC++ V+K++D+ + F
Sbjct: 117 RGLFAAETLLGMCLDVCEGMAYLEEAC-VIHRDLAARNCLVGENQVIKVSDFGMTRFVLD 175
Query: 157 QNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG-LRHEN 211
T + W +PE+ R S DV+SFG+++ EV +G + +EN
Sbjct: 176 DQYTSSTGTKFPVKWASPEVFSFS----RYSSKSDVWSFGVLMWEVFSEGKIPYEN 227
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 80/152 (52%), Gaps = 9/152 (5%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ G + T ++ EF GSL+ L Q++ + + +L + GM+YL
Sbjct: 93 HPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLA 152
Query: 121 SVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR----ELLWTAPEL 176
+ + +H +L +RN ++++ V K++D+ L+ F + P +A + WTAPE
Sbjct: 153 DMNY-VHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEA 211
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
++ +R + + DV+S+GI++ EV+ G R
Sbjct: 212 IQ---YR-KFTSASDVWSYGIVMWEVMSYGER 239
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 47/156 (30%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 262
++ H N+ G + T ++ EF GSL+ L Q++ + + +L +
Sbjct: 87 IMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAA 146
Query: 263 GMRYLHSVPHRLHELL-------------------------------------------W 279
GM+YL + + +L W
Sbjct: 147 GMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRW 206
Query: 280 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE 315
TAPE ++ +R + + DV+S+GI++ EV+ GE
Sbjct: 207 TAPEAIQ---YR-KFTSASDVWSYGIVMWEVMSYGE 238
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 13/196 (6%)
Query: 23 KARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWE 82
K +++GD V +K + + T + + + L+ RH N+ F+G+ P A+V +
Sbjct: 30 KGKWHGD-VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQ-LAIVTQ 87
Query: 83 FCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWV 142
+C SL L E K + + + RGM YLH+ +H +L S N +
Sbjct: 88 WCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHA-KSIIHRDLKSNNIFLHEDNT 146
Query: 143 LKITDYALNSFYDAQNIPPR-QKTARELLWTAPELLRDEAHRLRGSQP----GDVYSFGI 197
+KI D+ L + + + ++ + +LW APE++R ++ S P DVY+FGI
Sbjct: 147 VKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIR-----MQDSNPYSFQSDVYAFGI 201
Query: 198 IIQEVVLQGLRHENLN 213
++ E++ L + N+N
Sbjct: 202 VLYELMTGQLPYSNIN 217
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 50/163 (30%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 262
VL+ RH N+ F+G+ P A+V ++C SL L E K + + + R
Sbjct: 61 VLRKTRHVNILLFMGYSTKPQ-LAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTAR 119
Query: 263 GMRYLH--SVPHR--------LHE------------------------------LLWTAP 282
GM YLH S+ HR LHE +LW AP
Sbjct: 120 GMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 179
Query: 283 ELLRDEAHRLRGSQP----GDVYSFGIIIQEVVVRGEPFCMLS 321
E++ R++ S P DVY+FGI++ E++ P+ ++
Sbjct: 180 EVI-----RMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNIN 217
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 9/152 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPA--LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLV 113
L+ L HEN+ + G + G L+ EF GSL++ L +++ K++ +L +
Sbjct: 65 LRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQIC 124
Query: 114 RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARE--LLW 171
+GM YL S + +H +L +RN ++++ +KI D+ L + K R+ + W
Sbjct: 125 KGMDYLGSRQY-VHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVFW 183
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
APE L + DV+SFG+ + E++
Sbjct: 184 YAPECLMQSKFYI----ASDVWSFGVTLHELL 211
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPA--LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 260
+L+ L HEN+ + G + G L+ EF GSL++ L +++ K++ +L +
Sbjct: 64 ILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQI 123
Query: 261 VRGMRYLHSVPHRLHELLWTAPELLRDEAHRLR 293
+GM YL S + +L A +L + H+++
Sbjct: 124 CKGMDYLGSRQYVHRDL--AARNVLVESEHQVK 154
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 9/152 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPA--LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLV 113
L+ L HEN+ + G + G L+ EF GSL++ L +++ K++ +L +
Sbjct: 77 LRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQIC 136
Query: 114 RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARE--LLW 171
+GM YL S + +H +L +RN ++++ +KI D+ L + K R+ + W
Sbjct: 137 KGMDYLGSRQY-VHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVFW 195
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
APE L + DV+SFG+ + E++
Sbjct: 196 YAPECLMQSKFYI----ASDVWSFGVTLHELL 223
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPA--LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 260
+L+ L HEN+ + G + G L+ EF GSL++ L +++ K++ +L +
Sbjct: 76 ILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQI 135
Query: 261 VRGMRYLHSVPHRLHELLWTAPELLRDEAHRLR 293
+GM YL S + +L A +L + H+++
Sbjct: 136 CKGMDYLGSRQYVHRDL--AARNVLVESEHQVK 166
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 42 TIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL--VQDEIK 99
T ELK + + +HENL +GF D LV+ + GSL D L +
Sbjct: 61 TEELKQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTPP 120
Query: 100 LDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD--AQ 157
L W R + G+ +LH H +H ++ S N ++D + KI+D+ L + AQ
Sbjct: 121 LSWHXRCKIAQGAANGINFLHE-NHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQ 179
Query: 158 NIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ + + APE LR E + D+YSFG+++ E++
Sbjct: 180 XV-XXSRIVGTTAYXAPEALRGEI-----TPKSDIYSFGVVLLEII 219
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 59/153 (38%), Gaps = 42/153 (27%)
Query: 200 QEV-VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL--VQDEIKLDWTFRLSL 256
QE+ V +HENL +GF D LV+ + GSL D L + L W R +
Sbjct: 70 QEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTPPLSWHXRCKI 129
Query: 257 LTDLVRGMRYLHSVPHRLHELLWTAPELLRDEA--------------------------- 289
G+ +LH H +H + +A +L DEA
Sbjct: 130 AQGAANGINFLHE-NHHIHRDIKSA-NILLDEAFTAKISDFGLARASEKFAQXVXXSRIV 187
Query: 290 --------HRLRG--SQPGDVYSFGIIIQEVVV 312
LRG + D+YSFG+++ E++
Sbjct: 188 GTTAYXAPEALRGEITPKSDIYSFGVVLLEIIT 220
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 79/152 (51%), Gaps = 9/152 (5%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ G + T ++ EF GSL+ L Q++ + + +L + GM+YL
Sbjct: 67 HPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLA 126
Query: 121 SVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR----ELLWTAPEL 176
+ + +H L +RN ++++ V K++D+ L+ F + P +A + WTAPE
Sbjct: 127 DMNY-VHRALAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEA 185
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
++ +R + + DV+S+GI++ EV+ G R
Sbjct: 186 IQ---YR-KFTSASDVWSYGIVMWEVMSYGER 213
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 49/157 (31%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 262
++ H N+ G + T ++ EF GSL+ L Q++ + + +L +
Sbjct: 61 IMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAA 120
Query: 263 GMRYLHSVPHRLHELL-------------------------------------------- 278
GM+YL + + +H L
Sbjct: 121 GMKYLADMNY-VHRALAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIR 179
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE 315
WTAPE ++ +R + + DV+S+GI++ EV+ GE
Sbjct: 180 WTAPEAIQ---YR-KFTSASDVWSYGIVMWEVMSYGE 212
>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp
Length = 298
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 94/199 (47%), Gaps = 18/199 (9%)
Query: 54 LQLQGLRHENLNPFIGFLWDPTG-PALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 112
L ++GL H N+ IG + P G P ++ + C G L + + +S +
Sbjct: 74 LLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQV 133
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL------NSFYDAQNIPPRQKTA 166
RGM YL + +H +L +RNC++D + +K+ D+ L +Y Q + + A
Sbjct: 134 ARGMEYL-AEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQ----QHRHA 188
Query: 167 R-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL-RHENLNPFIGFLWDPTG 224
R + WTA E L+ R + DV+SFG+++ E++ +G + +++PF + G
Sbjct: 189 RLPVKWTALESLQT----YRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQG 244
Query: 225 PALVWEFCCRGSLEDVLVQ 243
L C SL V+ Q
Sbjct: 245 RRLPQPEYCPDSLYQVMQQ 263
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 47/158 (29%)
Query: 202 VVLQGLRHENLNPFIGFLWDPTG-PALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 260
++++GL H N+ IG + P G P ++ + C G L + + +S +
Sbjct: 74 LLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQV 133
Query: 261 VRGMRYL---------------------------------------HSVPHRLHELL--- 278
RGM YL +SV H L
Sbjct: 134 ARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVK 193
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEP 316
WTA E L+ R + DV+SFG+++ E++ RG P
Sbjct: 194 WTALESLQT----YRFTTKSDVWSFGVLLWELLTRGAP 227
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 6/157 (3%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRG 115
+ L H L G + LV+EF G L D L L + D+ G
Sbjct: 56 MMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG 115
Query: 116 MRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPE 175
M YL +H +L +RNC++ V+K++D+ + F T + W +PE
Sbjct: 116 MAYLEEAS-VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPE 174
Query: 176 LLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG-LRHEN 211
+ R S DV+SFG+++ EV +G + +EN
Sbjct: 175 VFSFS----RYSSKSDVWSFGVLMWEVFSEGKIPYEN 207
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 51/158 (32%), Gaps = 43/158 (27%)
Query: 197 IIIQEVVLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSL 256
I + V+ L H L G + LV+EF G L D L L +
Sbjct: 49 FIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGM 108
Query: 257 LTDLVRGMRYLH--SVPHR-------------------------------------LHEL 277
D+ GM YL SV HR +
Sbjct: 109 CLDVCEGMAYLEEASVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPV 168
Query: 278 LWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE 315
W +PE+ R S DV+SFG+++ EV G+
Sbjct: 169 KWASPEVFSFS----RYSSKSDVWSFGVLMWEVFSEGK 202
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 13/196 (6%)
Query: 23 KARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWE 82
K +++GD V +K + + T + + + L+ RH N+ F+G+ P A+V +
Sbjct: 42 KGKWHGD-VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQ-LAIVTQ 99
Query: 83 FCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWV 142
+C SL L E K + + + RGM YLH+ +H +L S N +
Sbjct: 100 WCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHA-KSIIHRDLKSNNIFLHEDNT 158
Query: 143 LKITDYALNSFYDAQNIPPR-QKTARELLWTAPELLRDEAHRLRGSQP----GDVYSFGI 197
+KI D+ L + + + ++ + +LW APE++R ++ S P DVY+FGI
Sbjct: 159 VKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIR-----MQDSNPYSFQSDVYAFGI 213
Query: 198 IIQEVVLQGLRHENLN 213
++ E++ L + N+N
Sbjct: 214 VLYELMTGQLPYSNIN 229
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 50/163 (30%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 262
VL+ RH N+ F+G+ P A+V ++C SL L E K + + + R
Sbjct: 73 VLRKTRHVNILLFMGYSTKPQ-LAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTAR 131
Query: 263 GMRYLH--SVPHR--------LHE------------------------------LLWTAP 282
GM YLH S+ HR LHE +LW AP
Sbjct: 132 GMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAP 191
Query: 283 ELLRDEAHRLRGSQP----GDVYSFGIIIQEVVVRGEPFCMLS 321
E++ R++ S P DVY+FGI++ E++ P+ ++
Sbjct: 192 EVI-----RMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNIN 229
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 13/196 (6%)
Query: 23 KARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWE 82
K +++GD V +K + + T + + + L+ RH N+ F+G+ P A+V +
Sbjct: 42 KGKWHGD-VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQ-LAIVTQ 99
Query: 83 FCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWV 142
+C SL L E K + + + RGM YLH+ +H +L S N +
Sbjct: 100 WCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHA-KSIIHRDLKSNNIFLHEDNT 158
Query: 143 LKITDYALNSFYDAQNIPPR-QKTARELLWTAPELLRDEAHRLRGSQP----GDVYSFGI 197
+KI D+ L + + + ++ + +LW APE++R ++ S P DVY+FGI
Sbjct: 159 VKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIR-----MQDSNPYSFQSDVYAFGI 213
Query: 198 IIQEVVLQGLRHENLN 213
++ E++ L + N+N
Sbjct: 214 VLYELMTGQLPYSNIN 229
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 50/163 (30%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 262
VL+ RH N+ F+G+ P A+V ++C SL L E K + + + R
Sbjct: 73 VLRKTRHVNILLFMGYSTAPQ-LAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTAR 131
Query: 263 GMRYLH--SVPHR--------LHE------------------------------LLWTAP 282
GM YLH S+ HR LHE +LW AP
Sbjct: 132 GMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAP 191
Query: 283 ELLRDEAHRLRGSQP----GDVYSFGIIIQEVVVRGEPFCMLS 321
E++ R++ S P DVY+FGI++ E++ P+ ++
Sbjct: 192 EVI-----RMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNIN 229
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 6/157 (3%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRG 115
+ L H L G + LV+EF G L D L L + D+ G
Sbjct: 54 MMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG 113
Query: 116 MRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPE 175
M YL +H +L +RNC++ V+K++D+ + F T + W +PE
Sbjct: 114 MAYLEEAC-VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPE 172
Query: 176 LLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG-LRHEN 211
+ R S DV+SFG+++ EV +G + +EN
Sbjct: 173 VFSFS----RYSSKSDVWSFGVLMWEVFSEGKIPYEN 205
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 6/157 (3%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRG 115
+ L H L G + LV+EF G L D L L + D+ G
Sbjct: 56 MMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG 115
Query: 116 MRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPE 175
M YL +H +L +RNC++ V+K++D+ + F T + W +PE
Sbjct: 116 MAYLEEAC-VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPE 174
Query: 176 LLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG-LRHEN 211
+ R S DV+SFG+++ EV +G + +EN
Sbjct: 175 VFSFS----RYSSKSDVWSFGVLMWEVFSEGKIPYEN 207
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 30/207 (14%)
Query: 4 GVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQ----LQGL 59
GV +G QYDV V I+ S S D Q + L
Sbjct: 22 GVVKLGKWKGQYDVAV---------------------KMIKEGSMSEDEFFQEAQTMMKL 60
Query: 60 RHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYL 119
H L F G +V E+ G L + L L+ + L + D+ GM +L
Sbjct: 61 SHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFL 120
Query: 120 HSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRD 179
S +H +L +RNC++D +K++D+ + + T + W+APE+
Sbjct: 121 ES-HQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVF-- 177
Query: 180 EAHRLRGSQPGDVYSFGIIIQEVVLQG 206
H + S DV++FGI++ EV G
Sbjct: 178 --HYFKYSSKSDVWAFGILMWEVFSLG 202
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 257 LTDLVRGMRYLHSVPHRLHELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE 315
+T V +Y+ SV + + W+APE+ H + S DV++FGI++ EV G+
Sbjct: 150 MTRYVLDDQYVSSVGTKF-PVKWSAPEVF----HYFKYSSKSDVWAFGILMWEVFSLGK 203
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 6/157 (3%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRG 115
+ L H L G + LV+EF G L D L L + D+ G
Sbjct: 59 MMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG 118
Query: 116 MRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPE 175
M YL +H +L +RNC++ V+K++D+ + F T + W +PE
Sbjct: 119 MAYLEEAC-VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPE 177
Query: 176 LLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG-LRHEN 211
+ R S DV+SFG+++ EV +G + +EN
Sbjct: 178 VFSFS----RYSSKSDVWSFGVLMWEVFSEGKIPYEN 210
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 22/183 (12%)
Query: 37 PLHGNTIE------LKSKSVDHLLQ-------LQGLRHENLNPFIGFLWDP--TGPALVW 81
PL NT E L+ + +HL L+ L+H+N+ + G + L+
Sbjct: 34 PLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM 93
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARW 141
E+ GSL D L + + ++D L + + +GM YL + + +H NL +RN +++
Sbjct: 94 EYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY-IHRNLATRNILVENEN 152
Query: 142 VLKITDYALNSF--YDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIII 199
+KI D+ L D + ++ + W APE L + + S DV+SFG+++
Sbjct: 153 RVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTES----KFSVASDVWSFGVVL 208
Query: 200 QEV 202
E+
Sbjct: 209 YEL 211
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 203 VLQGLRHENLNPFIGFLWDP--TGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 260
+L+ L+H+N+ + G + L+ E+ GSL D L + + ++D L + +
Sbjct: 65 ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQI 124
Query: 261 VRGMRYLHSVPHRLHELLWTAPELLRDE 288
+GM YL + + +H L T L+ +E
Sbjct: 125 CKGMEYLGTKRY-IHRNLATRNILVENE 151
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 31/179 (17%)
Query: 40 GNTIELKSKSVDHLLQ--------LQGLRHENLNPFIGFLWDPTGPA-LVWEFCCRGSLE 90
GN + +K D Q + LRH NL +G + + G +V E+ +GSL
Sbjct: 35 GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLV 94
Query: 91 DVL---VQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITD 147
D L + + D + SL D+ M YL + +H +L +RN ++ V K++D
Sbjct: 95 DYLRSRGRSVLGGDCLLKFSL--DVCEAMEYLEG-NNFVHRDLAARNVLVSEDNVAKVSD 151
Query: 148 YAL----NSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEV 202
+ L +S D +P + WTAPE LR+ A S DV+SFGI++ E+
Sbjct: 152 FGLTKEASSTQDTGKLPVK--------WTAPEALREAAF----STKSDVWSFGILLWEI 198
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 45/163 (27%)
Query: 191 DVYSFGIIIQEVVLQGLRHENLNPFIGFLWDPTGPA-LVWEFCCRGSLEDVL---VQDEI 246
D + + + V+ LRH NL +G + + G +V E+ +GSL D L + +
Sbjct: 46 DATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVL 105
Query: 247 KLDWTFRLSLLTDLVRGMRYL--HSVPHR--------LHE-------------------- 276
D + SL D+ M YL ++ HR + E
Sbjct: 106 GGDCLLKFSL--DVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD 163
Query: 277 -----LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
+ WTAPE LR+ A S DV+SFGI++ E+ G
Sbjct: 164 TGKLPVKWTAPEALREAAF----STKSDVWSFGILLWEIYSFG 202
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 6/157 (3%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRG 115
+ L H L G + LV EF G L D L L + D+ G
Sbjct: 57 MMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG 116
Query: 116 MRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPE 175
M YL +H +L +RNC++ V+K++D+ + F T + W +PE
Sbjct: 117 MAYLEEAC-VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPE 175
Query: 176 LLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG-LRHEN 211
+ R S DV+SFG+++ EV +G + +EN
Sbjct: 176 VFSFS----RYSSKSDVWSFGVLMWEVFSEGKIPYEN 208
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 94/192 (48%), Gaps = 5/192 (2%)
Query: 23 KARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWE 82
K +++GD V +K + + T + + + L+ RH N+ F+G+ P A+V +
Sbjct: 26 KGKWHGD-VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQ-LAIVTQ 83
Query: 83 FCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWV 142
+C SL L E K + + + +GM YLH+ +H +L S N +
Sbjct: 84 WCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHA-KSIIHRDLKSNNIFLHEDLT 142
Query: 143 LKITDYALNSFYDAQNIPPR-QKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQE 201
+KI D+ L + + + ++ + +LW APE++R + Q DVY+FGI++ E
Sbjct: 143 VKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ-SDVYAFGIVLYE 201
Query: 202 VVLQGLRHENLN 213
++ L + N+N
Sbjct: 202 LMTGQLPYSNIN 213
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 42/159 (26%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 262
VL+ RH N+ F+G+ P A+V ++C SL L E K + + + +
Sbjct: 57 VLRKTRHVNILLFMGYSTKPQ-LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQ 115
Query: 263 GMRYLH--SVPHR--------LHE------------------------------LLWTAP 282
GM YLH S+ HR LHE +LW AP
Sbjct: 116 GMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 175
Query: 283 ELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCMLS 321
E++R + Q DVY+FGI++ E++ P+ ++
Sbjct: 176 EVIRMQDKNPYSFQ-SDVYAFGIVLYELMTGQLPYSNIN 213
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 102/215 (47%), Gaps = 26/215 (12%)
Query: 9 GADSSQYD---VNVVDRKARYNGDLVQM-KPVPLHGNTIE------LKSKSVDHLLQ--- 55
G+D +Q++ + + + + N V+M + PL NT E L+ + +HL
Sbjct: 1 GSDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER 60
Query: 56 ----LQGLRHENLNPFIGFLWDP--TGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLL 109
L+ L+H+N+ + G + L+ E+ GSL D L + + ++D L
Sbjct: 61 EIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYT 120
Query: 110 TDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSF--YDAQNIPPRQKTAR 167
+ + +GM YL + + +H +L +RN +++ +KI D+ L D + ++
Sbjct: 121 SQICKGMEYLGTKRY-IHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 179
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEV 202
+ W APE L + + S DV+SFG+++ E+
Sbjct: 180 PIFWYAPESLTES----KFSVASDVWSFGVVLYEL 210
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 203 VLQGLRHENLNPFIGFLWDP--TGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 260
+L+ L+H+N+ + G + L+ E+ GSL D L + + ++D L + +
Sbjct: 64 ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQI 123
Query: 261 VRGMRYLHSVPHRLHELLWTAPELLRDE 288
+GM YL + + +H L T L+ +E
Sbjct: 124 CKGMEYLGTKRY-IHRDLATRNILVENE 150
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 102/215 (47%), Gaps = 26/215 (12%)
Query: 9 GADSSQYD---VNVVDRKARYNGDLVQM-KPVPLHGNTIE------LKSKSVDHLLQ--- 55
G+D +Q++ + + + + N V+M + PL NT E L+ + +HL
Sbjct: 1 GSDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER 60
Query: 56 ----LQGLRHENLNPFIGFLWDP--TGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLL 109
L+ L+H+N+ + G + L+ E+ GSL D L + + ++D L
Sbjct: 61 EIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYT 120
Query: 110 TDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSF--YDAQNIPPRQKTAR 167
+ + +GM YL + + +H +L +RN +++ +KI D+ L D + ++
Sbjct: 121 SQICKGMEYLGTKRY-IHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGES 179
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEV 202
+ W APE L + + S DV+SFG+++ E+
Sbjct: 180 PIFWYAPESLTES----KFSVASDVWSFGVVLYEL 210
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 203 VLQGLRHENLNPFIGFLWDP--TGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 260
+L+ L+H+N+ + G + L+ E+ GSL D L + + ++D L + +
Sbjct: 64 ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQI 123
Query: 261 VRGMRYLHSVPHRLHELLWTAPELLRDE 288
+GM YL + + +H L T L+ +E
Sbjct: 124 CKGMEYLGTKRY-IHRDLATRNILVENE 150
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 94/192 (48%), Gaps = 5/192 (2%)
Query: 23 KARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWE 82
K +++GD V +K + + T + + + L+ RH N+ F+G+ P A+V +
Sbjct: 28 KGKWHGD-VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQ-LAIVTQ 85
Query: 83 FCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWV 142
+C SL L E K + + + +GM YLH+ +H +L S N +
Sbjct: 86 WCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHA-KSIIHRDLKSNNIFLHEDLT 144
Query: 143 LKITDYALNSFYDAQNIPPR-QKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQE 201
+KI D+ L + + + ++ + +LW APE++R + Q DVY+FGI++ E
Sbjct: 145 VKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ-SDVYAFGIVLYE 203
Query: 202 VVLQGLRHENLN 213
++ L + N+N
Sbjct: 204 LMTGQLPYSNIN 215
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 42/159 (26%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 262
VL+ RH N+ F+G+ P A+V ++C SL L E K + + + +
Sbjct: 59 VLRKTRHVNILLFMGYSTKPQ-LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQ 117
Query: 263 GMRYLH--SVPHR--------LHE------------------------------LLWTAP 282
GM YLH S+ HR LHE +LW AP
Sbjct: 118 GMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 177
Query: 283 ELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCMLS 321
E++R + Q DVY+FGI++ E++ P+ ++
Sbjct: 178 EVIRMQDKNPYSFQ-SDVYAFGIVLYELMTGQLPYSNIN 215
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 94/192 (48%), Gaps = 5/192 (2%)
Query: 23 KARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWE 82
K +++GD V +K + + T + + + L+ RH N+ F+G+ P A+V +
Sbjct: 31 KGKWHGD-VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQ-LAIVTQ 88
Query: 83 FCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWV 142
+C SL L E K + + + +GM YLH+ +H +L S N +
Sbjct: 89 WCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHA-KSIIHRDLKSNNIFLHEDLT 147
Query: 143 LKITDYALNSFYDAQNIPPR-QKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQE 201
+KI D+ L + + + ++ + +LW APE++R + Q DVY+FGI++ E
Sbjct: 148 VKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ-SDVYAFGIVLYE 206
Query: 202 VVLQGLRHENLN 213
++ L + N+N
Sbjct: 207 LMTGQLPYSNIN 218
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 42/159 (26%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 262
VL+ RH N+ F+G+ P A+V ++C SL L E K + + + +
Sbjct: 62 VLRKTRHVNILLFMGYSTKPQ-LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQ 120
Query: 263 GMRYLH--SVPHR--------LHE------------------------------LLWTAP 282
GM YLH S+ HR LHE +LW AP
Sbjct: 121 GMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 180
Query: 283 ELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCMLS 321
E++R + Q DVY+FGI++ E++ P+ ++
Sbjct: 181 EVIRMQDKNPYSFQ-SDVYAFGIVLYELMTGQLPYSNIN 218
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 94/192 (48%), Gaps = 5/192 (2%)
Query: 23 KARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWE 82
K +++GD V +K + + T + + + L+ RH N+ F+G+ P A+V +
Sbjct: 31 KGKWHGD-VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQ-LAIVTQ 88
Query: 83 FCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWV 142
+C SL L E K + + + +GM YLH+ +H +L S N +
Sbjct: 89 WCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHA-KSIIHRDLKSNNIFLHEDLT 147
Query: 143 LKITDYALNSFYDAQNIPPR-QKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQE 201
+KI D+ L + + + ++ + +LW APE++R + Q DVY+FGI++ E
Sbjct: 148 VKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ-SDVYAFGIVLYE 206
Query: 202 VVLQGLRHENLN 213
++ L + N+N
Sbjct: 207 LMTGQLPYSNIN 218
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 42/159 (26%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 262
VL+ RH N+ F+G+ P A+V ++C SL L E K + + + +
Sbjct: 62 VLRKTRHVNILLFMGYSTKPQ-LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQ 120
Query: 263 GMRYLH--SVPHR--------LHE------------------------------LLWTAP 282
GM YLH S+ HR LHE +LW AP
Sbjct: 121 GMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 180
Query: 283 ELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCMLS 321
E++R + Q DVY+FGI++ E++ P+ ++
Sbjct: 181 EVIRMQDKNPYSFQ-SDVYAFGIVLYELMTGQLPYSNIN 218
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 94/192 (48%), Gaps = 5/192 (2%)
Query: 23 KARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWE 82
K +++GD V +K + + T + + + L+ RH N+ F+G+ P A+V +
Sbjct: 26 KGKWHGD-VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQ-LAIVTQ 83
Query: 83 FCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWV 142
+C SL L E K + + + +GM YLH+ +H +L S N +
Sbjct: 84 WCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHA-KSIIHRDLKSNNIFLHEDLT 142
Query: 143 LKITDYALNSFYDAQNIPPR-QKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQE 201
+KI D+ L + + + ++ + +LW APE++R + Q DVY+FGI++ E
Sbjct: 143 VKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ-SDVYAFGIVLYE 201
Query: 202 VVLQGLRHENLN 213
++ L + N+N
Sbjct: 202 LMTGQLPYSNIN 213
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 42/159 (26%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 262
VL+ RH N+ F+G+ P A+V ++C SL L E K + + + +
Sbjct: 57 VLRKTRHVNILLFMGYSTAPQ-LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQ 115
Query: 263 GMRYLH--SVPHR--------LHE------------------------------LLWTAP 282
GM YLH S+ HR LHE +LW AP
Sbjct: 116 GMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 175
Query: 283 ELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCMLS 321
E++R + Q DVY+FGI++ E++ P+ ++
Sbjct: 176 EVIRMQDKNPYSFQ-SDVYAFGIVLYELMTGQLPYSNIN 213
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 31/179 (17%)
Query: 40 GNTIELKSKSVDHLLQ--------LQGLRHENLNPFIGFLWDPTGPA-LVWEFCCRGSLE 90
GN + +K D Q + LRH NL +G + + G +V E+ +GSL
Sbjct: 44 GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLV 103
Query: 91 DVL---VQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITD 147
D L + + D + SL D+ M YL + +H +L +RN ++ V K++D
Sbjct: 104 DYLRSRGRSVLGGDCLLKFSL--DVCEAMEYLEG-NNFVHRDLAARNVLVSEDNVAKVSD 160
Query: 148 YAL----NSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEV 202
+ L +S D +P + WTAPE LR++ + S DV+SFGI++ E+
Sbjct: 161 FGLTKEASSTQDTGKLPVK--------WTAPEALREK----KFSTKSDVWSFGILLWEI 207
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 45/163 (27%)
Query: 191 DVYSFGIIIQEVVLQGLRHENLNPFIGFLWDPTGPA-LVWEFCCRGSLEDVL---VQDEI 246
D + + + V+ LRH NL +G + + G +V E+ +GSL D L + +
Sbjct: 55 DATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVL 114
Query: 247 KLDWTFRLSLLTDLVRGMRYL--HSVPHR--------LHE-------------------- 276
D + SL D+ M YL ++ HR + E
Sbjct: 115 GGDCLLKFSL--DVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD 172
Query: 277 -----LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
+ WTAPE LR++ + S DV+SFGI++ E+ G
Sbjct: 173 TGKLPVKWTAPEALREK----KFSTKSDVWSFGILLWEIYSFG 211
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 31/179 (17%)
Query: 40 GNTIELKSKSVDHLLQ--------LQGLRHENLNPFIGFLWDPTGPA-LVWEFCCRGSLE 90
GN + +K D Q + LRH NL +G + + G +V E+ +GSL
Sbjct: 29 GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLV 88
Query: 91 DVLV---QDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITD 147
D L + + D + SL D+ M YL + +H +L +RN ++ V K++D
Sbjct: 89 DYLRSRGRSVLGGDCLLKFSL--DVCEAMEYLEG-NNFVHRDLAARNVLVSEDNVAKVSD 145
Query: 148 YAL----NSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEV 202
+ L +S D +P + WTAPE LR++ + S DV+SFGI++ E+
Sbjct: 146 FGLTKEASSTQDTGKLPVK--------WTAPEALREK----KFSTKSDVWSFGILLWEI 192
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 45/163 (27%)
Query: 191 DVYSFGIIIQEVVLQGLRHENLNPFIGFLWDPTGPA-LVWEFCCRGSLEDVLV---QDEI 246
D + + + V+ LRH NL +G + + G +V E+ +GSL D L + +
Sbjct: 40 DATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVL 99
Query: 247 KLDWTFRLSLLTDLVRGMRYL--HSVPHR--------LHE-------------------- 276
D + SL D+ M YL ++ HR + E
Sbjct: 100 GGDCLLKFSL--DVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD 157
Query: 277 -----LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
+ WTAPE LR++ + S DV+SFGI++ E+ G
Sbjct: 158 TGKLPVKWTAPEALREK----KFSTKSDVWSFGILLWEIYSFG 196
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 94/192 (48%), Gaps = 5/192 (2%)
Query: 23 KARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWE 82
K +++GD V +K + + T + + + L+ RH N+ F+G+ P A+V +
Sbjct: 54 KGKWHGD-VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQ-LAIVTQ 111
Query: 83 FCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWV 142
+C SL L E K + + + +GM YLH+ +H +L S N +
Sbjct: 112 WCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHA-KSIIHRDLKSNNIFLHEDLT 170
Query: 143 LKITDYALNSFYDAQNIPPR-QKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQE 201
+KI D+ L + + + ++ + +LW APE++R + Q DVY+FGI++ E
Sbjct: 171 VKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ-SDVYAFGIVLYE 229
Query: 202 VVLQGLRHENLN 213
++ L + N+N
Sbjct: 230 LMTGQLPYSNIN 241
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 42/159 (26%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 262
VL+ RH N+ F+G+ P A+V ++C SL L E K + + + +
Sbjct: 85 VLRKTRHVNILLFMGYSTKPQ-LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQ 143
Query: 263 GMRYLH--SVPHR--------LHE------------------------------LLWTAP 282
GM YLH S+ HR LHE +LW AP
Sbjct: 144 GMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 203
Query: 283 ELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCMLS 321
E++R + Q DVY+FGI++ E++ P+ ++
Sbjct: 204 EVIRMQDKNPYSFQ-SDVYAFGIVLYELMTGQLPYSNIN 241
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 22/183 (12%)
Query: 37 PLHGNTIE------LKSKSVDHLLQ-------LQGLRHENLNPFIGFLWDP--TGPALVW 81
PL NT E L+ + +HL L+ L+H+N+ + G + L+
Sbjct: 37 PLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM 96
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARW 141
E+ GSL D L + + ++D L + + +GM YL + + +H +L +RN +++
Sbjct: 97 EYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY-IHRDLATRNILVENEN 155
Query: 142 VLKITDYALNSF--YDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIII 199
+KI D+ L D + ++ + W APE L + + S DV+SFG+++
Sbjct: 156 RVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTES----KFSVASDVWSFGVVL 211
Query: 200 QEV 202
E+
Sbjct: 212 YEL 214
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 203 VLQGLRHENLNPFIGFLWDP--TGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 260
+L+ L+H+N+ + G + L+ E+ GSL D L + + ++D L + +
Sbjct: 68 ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQI 127
Query: 261 VRGMRYLHSVPHRLHELLWTAPELLRDE 288
+GM YL + + +H L T L+ +E
Sbjct: 128 CKGMEYLGTKRY-IHRDLATRNILVENE 154
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 94/192 (48%), Gaps = 5/192 (2%)
Query: 23 KARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWE 82
K +++GD V +K + + T + + + L+ RH N+ F+G+ P A+V +
Sbjct: 53 KGKWHGD-VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQ-LAIVTQ 110
Query: 83 FCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWV 142
+C SL L E K + + + +GM YLH+ +H +L S N +
Sbjct: 111 WCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHA-KSIIHRDLKSNNIFLHEDLT 169
Query: 143 LKITDYALNSFYDAQNIPPR-QKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQE 201
+KI D+ L + + + ++ + +LW APE++R + Q DVY+FGI++ E
Sbjct: 170 VKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ-SDVYAFGIVLYE 228
Query: 202 VVLQGLRHENLN 213
++ L + N+N
Sbjct: 229 LMTGQLPYSNIN 240
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 42/159 (26%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 262
VL+ RH N+ F+G+ P A+V ++C SL L E K + + + +
Sbjct: 84 VLRKTRHVNILLFMGYSTKPQ-LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQ 142
Query: 263 GMRYLH--SVPHR--------LHE------------------------------LLWTAP 282
GM YLH S+ HR LHE +LW AP
Sbjct: 143 GMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 202
Query: 283 ELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCMLS 321
E++R + Q DVY+FGI++ E++ P+ ++
Sbjct: 203 EVIRMQDKNPYSFQ-SDVYAFGIVLYELMTGQLPYSNIN 240
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 22/183 (12%)
Query: 37 PLHGNTIE------LKSKSVDHLLQ-------LQGLRHENLNPFIGFLWDP--TGPALVW 81
PL NT E L+ + +HL L+ L+H+N+ + G + L+
Sbjct: 33 PLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM 92
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARW 141
E+ GSL D L + + ++D L + + +GM YL + + +H +L +RN +++
Sbjct: 93 EYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY-IHRDLATRNILVENEN 151
Query: 142 VLKITDYALNSF--YDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIII 199
+KI D+ L D + ++ + W APE L + + S DV+SFG+++
Sbjct: 152 RVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTES----KFSVASDVWSFGVVL 207
Query: 200 QEV 202
E+
Sbjct: 208 YEL 210
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 203 VLQGLRHENLNPFIGFLWDP--TGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 260
+L+ L+H+N+ + G + L+ E+ GSL D L + + ++D L + +
Sbjct: 64 ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQI 123
Query: 261 VRGMRYLHSVPHRLHELLWTAPELLRDE 288
+GM YL + + +H L T L+ +E
Sbjct: 124 CKGMEYLGTKRY-IHRDLATRNILVENE 150
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 22/183 (12%)
Query: 37 PLHGNTIE------LKSKSVDHLLQ-------LQGLRHENLNPFIGFLWDP--TGPALVW 81
PL NT E L+ + +HL L+ L+H+N+ + G + L+
Sbjct: 40 PLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM 99
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARW 141
E+ GSL D L + + ++D L + + +GM YL + + +H +L +RN +++
Sbjct: 100 EYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY-IHRDLATRNILVENEN 158
Query: 142 VLKITDYALNSF--YDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIII 199
+KI D+ L D + ++ + W APE L + + S DV+SFG+++
Sbjct: 159 RVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTES----KFSVASDVWSFGVVL 214
Query: 200 QEV 202
E+
Sbjct: 215 YEL 217
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 203 VLQGLRHENLNPFIGFLWDP--TGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 260
+L+ L+H+N+ + G + L+ E+ GSL D L + + ++D L + +
Sbjct: 71 ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQI 130
Query: 261 VRGMRYLHSVPHRLHELLWTAPELLRDE 288
+GM YL + + +H L T L+ +E
Sbjct: 131 CKGMEYLGTKRY-IHRDLATRNILVENE 157
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 22/183 (12%)
Query: 37 PLHGNTIE------LKSKSVDHLLQ-------LQGLRHENLNPFIGFLWDP--TGPALVW 81
PL NT E L+ + +HL L+ L+H+N+ + G + L+
Sbjct: 32 PLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM 91
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARW 141
E+ GSL D L + + ++D L + + +GM YL + + +H +L +RN +++
Sbjct: 92 EYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY-IHRDLATRNILVENEN 150
Query: 142 VLKITDYALNSF--YDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIII 199
+KI D+ L D + ++ + W APE L + + S DV+SFG+++
Sbjct: 151 RVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTES----KFSVASDVWSFGVVL 206
Query: 200 QEV 202
E+
Sbjct: 207 YEL 209
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 203 VLQGLRHENLNPFIGFLWDP--TGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 260
+L+ L+H+N+ + G + L+ E+ GSL D L + + ++D L + +
Sbjct: 63 ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQI 122
Query: 261 VRGMRYLHSVPHRLHELLWTAPELLRDE 288
+GM YL + + +H L T L+ +E
Sbjct: 123 CKGMEYLGTKRY-IHRDLATRNILVENE 149
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 22/183 (12%)
Query: 37 PLHGNTIE------LKSKSVDHLLQ-------LQGLRHENLNPFIGFLWDP--TGPALVW 81
PL NT E L+ + +HL L+ L+H+N+ + G + L+
Sbjct: 39 PLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM 98
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARW 141
E+ GSL D L + + ++D L + + +GM YL + + +H +L +RN +++
Sbjct: 99 EYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY-IHRDLATRNILVENEN 157
Query: 142 VLKITDYALNSF--YDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIII 199
+KI D+ L D + ++ + W APE L + + S DV+SFG+++
Sbjct: 158 RVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTES----KFSVASDVWSFGVVL 213
Query: 200 QEV 202
E+
Sbjct: 214 YEL 216
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 203 VLQGLRHENLNPFIGFLWDP--TGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 260
+L+ L+H+N+ + G + L+ E+ GSL D L + + ++D L + +
Sbjct: 70 ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQI 129
Query: 261 VRGMRYLHSVPHRLHELLWTAPELLRDE 288
+GM YL + + +H L T L+ +E
Sbjct: 130 CKGMEYLGTKRY-IHRDLATRNILVENE 156
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 22/183 (12%)
Query: 37 PLHGNTIE------LKSKSVDHLLQ-------LQGLRHENLNPFIGFLWDP--TGPALVW 81
PL NT E L+ + +HL L+ L+H+N+ + G + L+
Sbjct: 31 PLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM 90
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARW 141
E+ GSL D L + + ++D L + + +GM YL + + +H +L +RN +++
Sbjct: 91 EYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY-IHRDLATRNILVENEN 149
Query: 142 VLKITDYALNSF--YDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIII 199
+KI D+ L D + ++ + W APE L + + S DV+SFG+++
Sbjct: 150 RVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTES----KFSVASDVWSFGVVL 205
Query: 200 QEV 202
E+
Sbjct: 206 YEL 208
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 203 VLQGLRHENLNPFIGFLWDP--TGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 260
+L+ L+H+N+ + G + L+ E+ GSL D L + + ++D L + +
Sbjct: 62 ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQI 121
Query: 261 VRGMRYLHSVPHRLHELLWTAPELLRDE 288
+GM YL + + +H L T L+ +E
Sbjct: 122 CKGMEYLGTKRY-IHRDLATRNILVENE 148
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 31/179 (17%)
Query: 40 GNTIELKSKSVDHLLQ--------LQGLRHENLNPFIGFLWDPTGP-ALVWEFCCRGSLE 90
GN + +K D Q + LRH NL +G + + G +V E+ +GSL
Sbjct: 216 GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLV 275
Query: 91 DVLV---QDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITD 147
D L + + D + SL D+ M YL + +H +L +RN ++ V K++D
Sbjct: 276 DYLRSRGRSVLGGDCLLKFSL--DVCEAMEYLEG-NNFVHRDLAARNVLVSEDNVAKVSD 332
Query: 148 YAL----NSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEV 202
+ L +S D +P + WTAPE LR++ + S DV+SFGI++ E+
Sbjct: 333 FGLTKEASSTQDTGKLPVK--------WTAPEALREK----KFSTKSDVWSFGILLWEI 379
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 45/163 (27%)
Query: 191 DVYSFGIIIQEVVLQGLRHENLNPFIGFLWDPTGP-ALVWEFCCRGSLEDVLV---QDEI 246
D + + + V+ LRH NL +G + + G +V E+ +GSL D L + +
Sbjct: 227 DATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVL 286
Query: 247 KLDWTFRLSLLTDLVRGMRYL--HSVPHR--------LHE-------------------- 276
D + SL D+ M YL ++ HR + E
Sbjct: 287 GGDCLLKFSL--DVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD 344
Query: 277 -----LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
+ WTAPE LR++ + S DV+SFGI++ E+ G
Sbjct: 345 TGKLPVKWTAPEALREK----KFSTKSDVWSFGILLWEIYSFG 383
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 22/183 (12%)
Query: 37 PLHGNTIE------LKSKSVDHLLQ-------LQGLRHENLNPFIGFLWDP--TGPALVW 81
PL NT E L+ + +HL L+ L+H+N+ + G + L+
Sbjct: 38 PLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM 97
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARW 141
E+ GSL D L + + ++D L + + +GM YL + + +H +L +RN +++
Sbjct: 98 EYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY-IHRDLATRNILVENEN 156
Query: 142 VLKITDYALNSF--YDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIII 199
+KI D+ L D + ++ + W APE L + + S DV+SFG+++
Sbjct: 157 RVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTES----KFSVASDVWSFGVVL 212
Query: 200 QEV 202
E+
Sbjct: 213 YEL 215
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 203 VLQGLRHENLNPFIGFLWDP--TGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 260
+L+ L+H+N+ + G + L+ E+ GSL D L + + ++D L + +
Sbjct: 69 ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQI 128
Query: 261 VRGMRYLHSVPHRLHELLWTAPELLRDE 288
+GM YL + + +H L T L+ +E
Sbjct: 129 CKGMEYLGTKRY-IHRDLATRNILVENE 155
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 22/183 (12%)
Query: 37 PLHGNTIE------LKSKSVDHLLQ-------LQGLRHENLNPFIGFLWDP--TGPALVW 81
PL NT E L+ + +HL L+ L+H+N+ + G + L+
Sbjct: 64 PLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM 123
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARW 141
E+ GSL D L + + ++D L + + +GM YL + + +H +L +RN +++
Sbjct: 124 EYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY-IHRDLATRNILVENEN 182
Query: 142 VLKITDYALNSF--YDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIII 199
+KI D+ L D + ++ + W APE L + + S DV+SFG+++
Sbjct: 183 RVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTES----KFSVASDVWSFGVVL 238
Query: 200 QEV 202
E+
Sbjct: 239 YEL 241
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 203 VLQGLRHENLNPFIGFLWDP--TGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 260
+L+ L+H+N+ + G + L+ E+ GSL D L + + ++D L + +
Sbjct: 95 ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQI 154
Query: 261 VRGMRYLHSVPHRLHELLWTAPELLRDE 288
+GM YL + + +H L T L+ +E
Sbjct: 155 CKGMEYLGTKRY-IHRDLATRNILVENE 181
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 22/183 (12%)
Query: 37 PLHGNTIE------LKSKSVDHLLQ-------LQGLRHENLNPFIGFLWDP--TGPALVW 81
PL NT E L+ + +HL L+ L+H+N+ + G + L+
Sbjct: 51 PLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM 110
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARW 141
E+ GSL D L + + ++D L + + +GM YL + + +H +L +RN +++
Sbjct: 111 EYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY-IHRDLATRNILVENEN 169
Query: 142 VLKITDYALNSF--YDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIII 199
+KI D+ L D + ++ + W APE L + + S DV+SFG+++
Sbjct: 170 RVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTES----KFSVASDVWSFGVVL 225
Query: 200 QEV 202
E+
Sbjct: 226 YEL 228
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 203 VLQGLRHENLNPFIGFLWDP--TGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 260
+L+ L+H+N+ + G + L+ E+ GSL D L + + ++D L + +
Sbjct: 82 ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQI 141
Query: 261 VRGMRYLHSVPHRLHELLWTAPELLRDE 288
+GM YL + + +H L T L+ +E
Sbjct: 142 CKGMEYLGTKRY-IHRDLATRNILVENE 168
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 22/183 (12%)
Query: 37 PLHGNTIE------LKSKSVDHLLQ-------LQGLRHENLNPFIGFLWDP--TGPALVW 81
PL NT E L+ + +HL L+ L+H+N+ + G + L+
Sbjct: 51 PLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM 110
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARW 141
E+ GSL D L + + ++D L + + +GM YL + + +H +L +RN +++
Sbjct: 111 EYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY-IHRDLATRNILVENEN 169
Query: 142 VLKITDYALNSF--YDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIII 199
+KI D+ L D + ++ + W APE L + + S DV+SFG+++
Sbjct: 170 RVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTES----KFSVASDVWSFGVVL 225
Query: 200 QEV 202
E+
Sbjct: 226 YEL 228
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 203 VLQGLRHENLNPFIGFLWDP--TGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 260
+L+ L+H+N+ + G + L+ E+ GSL D L + + ++D L + +
Sbjct: 82 ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQI 141
Query: 261 VRGMRYLHSVPHRLHELLWTAPELLRDE 288
+GM YL + + +H L T L+ +E
Sbjct: 142 CKGMEYLGTKRY-IHRDLATRNILVENE 168
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 8/165 (4%)
Query: 44 ELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWT 103
+LK+K + L+ H N+ IG +V E G L + +L
Sbjct: 154 DLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVK 213
Query: 104 FRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQ 163
L ++ D GM YL S +H +L +RNC++ + VLKI+D+ + S +A +
Sbjct: 214 TLLQMVGDAAAGMEYLES-KCCIHRDLAARNCLVTEKNVLKISDFGM-SREEADGVXAAS 271
Query: 164 KTARE--LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
R+ + WTAPE L + R S DV+SFGI++ E G
Sbjct: 272 GGLRQVPVKWTAPEAL----NYGRYSSESDVWSFGILLWETFSLG 312
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 22/183 (12%)
Query: 37 PLHGNTIE------LKSKSVDHLLQ-------LQGLRHENLNPFIGFLWDP--TGPALVW 81
PL NT E L+ + +HL L+ L+H+N+ + G + L+
Sbjct: 36 PLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM 95
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARW 141
E+ GSL D L + + ++D L + + +GM YL + + +H +L +RN +++
Sbjct: 96 EYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY-IHRDLATRNILVENEN 154
Query: 142 VLKITDYALNSF--YDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIII 199
+KI D+ L D + ++ + W APE L + + S DV+SFG+++
Sbjct: 155 RVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTES----KFSVASDVWSFGVVL 210
Query: 200 QEV 202
E+
Sbjct: 211 YEL 213
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 203 VLQGLRHENLNPFIGFLWDP--TGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 260
+L+ L+H+N+ + G + L+ E+ GSL D L + + ++D L + +
Sbjct: 67 ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQI 126
Query: 261 VRGMRYLHSVPHRLHELLWTAPELLRDE 288
+GM YL + + +H L T L+ +E
Sbjct: 127 CKGMEYLGTKRY-IHRDLATRNILVENE 153
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 94/192 (48%), Gaps = 5/192 (2%)
Query: 23 KARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWE 82
K +++GD V +K + + T + + + L+ RH N+ F+G+ P A+V +
Sbjct: 26 KGKWHGD-VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQ-LAIVTQ 83
Query: 83 FCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWV 142
+C SL L E K + + + +GM YLH+ +H +L S N +
Sbjct: 84 WCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHA-KSIIHRDLKSNNIFLHEDLT 142
Query: 143 LKITDYALNSFYDAQNIPPR-QKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQE 201
+KI D+ L + + + ++ + +LW APE++R + Q DVY+FGI++ E
Sbjct: 143 VKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ-SDVYAFGIVLYE 201
Query: 202 VVLQGLRHENLN 213
++ L + N+N
Sbjct: 202 LMTGQLPYSNIN 213
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 42/159 (26%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 262
VL+ RH N+ F+G+ P A+V ++C SL L E K + + + +
Sbjct: 57 VLRKTRHVNILLFMGYSTKPQ-LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQ 115
Query: 263 GMRYLH--SVPHR--------LHE------------------------------LLWTAP 282
GM YLH S+ HR LHE +LW AP
Sbjct: 116 GMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAP 175
Query: 283 ELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCMLS 321
E++R + Q DVY+FGI++ E++ P+ ++
Sbjct: 176 EVIRMQDKNPYSFQ-SDVYAFGIVLYELMTGQLPYSNIN 213
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 22/183 (12%)
Query: 37 PLHGNTIE------LKSKSVDHLLQ-------LQGLRHENLNPFIGFLWDP--TGPALVW 81
PL NT E L+ + +HL L+ L+H+N+ + G + L+
Sbjct: 36 PLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM 95
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARW 141
EF GSL + L + + ++D L + + +GM YL + + +H +L +RN +++
Sbjct: 96 EFLPYGSLREYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY-IHRDLATRNILVENEN 154
Query: 142 VLKITDYALNSF--YDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIII 199
+KI D+ L D + ++ + W APE L + + S DV+SFG+++
Sbjct: 155 RVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTES----KFSVASDVWSFGVVL 210
Query: 200 QEV 202
E+
Sbjct: 211 YEL 213
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 203 VLQGLRHENLNPFIGFLWDP--TGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 260
+L+ L+H+N+ + G + L+ EF GSL + L + + ++D L + +
Sbjct: 67 ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQKHKERIDHIKLLQYTSQI 126
Query: 261 VRGMRYLHSVPHRLHELLWTAPELLRDE 288
+GM YL + + +H L T L+ +E
Sbjct: 127 CKGMEYLGTKRY-IHRDLATRNILVENE 153
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 94/192 (48%), Gaps = 5/192 (2%)
Query: 23 KARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWE 82
K +++GD V +K + + T + + + L+ RH N+ F+G+ P A+V +
Sbjct: 46 KGKWHGD-VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQ-LAIVTQ 103
Query: 83 FCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWV 142
+C SL L E K + + + +GM YLH+ +H +L S N +
Sbjct: 104 WCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHA-KSIIHRDLKSNNIFLHEDLT 162
Query: 143 LKITDYALNSFYDAQNIPPR-QKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQE 201
+KI D+ L + + + ++ + +LW APE++R + Q DVY+FGI++ E
Sbjct: 163 VKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ-SDVYAFGIVLYE 221
Query: 202 VVLQGLRHENLN 213
++ L + N+N
Sbjct: 222 LMTGQLPYSNIN 233
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 42/159 (26%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 262
VL+ RH N+ F+G+ P A+V ++C SL L E K + + + +
Sbjct: 77 VLRKTRHVNILLFMGYSTKPQ-LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQ 135
Query: 263 GMRYLH--SVPHR--------LHE------------------------------LLWTAP 282
GM YLH S+ HR LHE +LW AP
Sbjct: 136 GMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAP 195
Query: 283 ELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCMLS 321
E++R + Q DVY+FGI++ E++ P+ ++
Sbjct: 196 EVIRMQDKNPYSFQ-SDVYAFGIVLYELMTGQLPYSNIN 233
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 8/165 (4%)
Query: 44 ELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWT 103
+LK+K + L+ H N+ IG +V E G L + +L
Sbjct: 154 DLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVK 213
Query: 104 FRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQ 163
L ++ D GM YL S +H +L +RNC++ + VLKI+D+ + S +A +
Sbjct: 214 TLLQMVGDAAAGMEYLES-KCCIHRDLAARNCLVTEKNVLKISDFGM-SREEADGVYAAS 271
Query: 164 KTARE--LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
R+ + WTAPE L + R S DV+SFGI++ E G
Sbjct: 272 GGLRQVPVKWTAPEAL----NYGRYSSESDVWSFGILLWETFSLG 312
>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex
With A Staurosporine Analogue
Length = 290
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 9/151 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPAL--VWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLV 113
L+ L + + + G + P P L V E+ G L D L + +LD + L + +
Sbjct: 62 LKALHSDFIVKYRGVSYGPGRPELRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQIC 121
Query: 114 RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSF--YDAQNIPPRQKTARELLW 171
+GM YL S +H +L +RN ++++ +KI D+ L D R+ + W
Sbjct: 122 KGMEYLGSR-RCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDXXVVREPGQSPIFW 180
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEV 202
APE L D S+ DV+SFG+++ E+
Sbjct: 181 YAPESLSDNIF----SRQSDVWSFGVVLYEL 207
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 74/191 (38%), Gaps = 53/191 (27%)
Query: 183 RLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFLWDPTGPAL--VWEFCCRGSLEDV 240
+L+ S P F IQ +L+ L + + + G + P P L V E+ G L D
Sbjct: 43 QLQHSGPDQQRDFQREIQ--ILKALHSDFIVKYRGVSYGPGRPELRLVMEYLPSGCLRDF 100
Query: 241 LVQDEIKLDWTFRLSLLTDLVRGMRYLHS--VPHR---------------------LHEL 277
L + +LD + L + + +GM YL S HR L +L
Sbjct: 101 LQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKL 160
Query: 278 L------------------WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCM 319
L W APE L D S+ DV+SFG+++ E+ +C
Sbjct: 161 LPLDKDXXVVREPGQSPIFWYAPESLSDNIF----SRQSDVWSFGVVLYELFT----YCD 212
Query: 320 LSLTPEGKLVR 330
S +P + +R
Sbjct: 213 KSCSPSAEFLR 223
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 94/192 (48%), Gaps = 5/192 (2%)
Query: 23 KARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWE 82
K +++GD V +K + + T + + + L+ RH N+ F+G+ P A+V +
Sbjct: 54 KGKWHGD-VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQ-LAIVTQ 111
Query: 83 FCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWV 142
+C SL L E K + + + +GM YLH+ +H +L S N +
Sbjct: 112 WCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHA-KSIIHRDLKSNNIFLHEDLT 170
Query: 143 LKITDYALNSFYDAQNIPPR-QKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQE 201
+KI D+ L + + + ++ + +LW APE++R + Q DVY+FGI++ E
Sbjct: 171 VKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ-SDVYAFGIVLYE 229
Query: 202 VVLQGLRHENLN 213
++ L + N+N
Sbjct: 230 LMTGQLPYSNIN 241
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 42/159 (26%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 262
VL+ RH N+ F+G+ P A+V ++C SL L E K + + + +
Sbjct: 85 VLRKTRHVNILLFMGYSTKPQ-LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQ 143
Query: 263 GMRYLH--SVPHR--------LHE------------------------------LLWTAP 282
GM YLH S+ HR LHE +LW AP
Sbjct: 144 GMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAP 203
Query: 283 ELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCMLS 321
E++R + Q DVY+FGI++ E++ P+ ++
Sbjct: 204 EVIRMQDKNPYSFQ-SDVYAFGIVLYELMTGQLPYSNIN 241
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 79/171 (46%), Gaps = 10/171 (5%)
Query: 42 TIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ-D 96
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L + +
Sbjct: 291 TLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECN 350
Query: 97 EIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDA 156
+++ L + T + M YL + +H NL +RNC++ ++K+ D+ L+
Sbjct: 351 RQEVNAVVLLYMATQISSAMEYLEK-KNFIHRNLAARNCLVGENHLVKVADFGLSRLMTG 409
Query: 157 QNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 410 DTYTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 456
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 277 LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH---- 331
+ WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 422 IKWTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRM 477
Query: 332 -----TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 478 ERPEGCPEKVYELMRACW 495
>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With
Quinoline-Thiadiazole- Thiophene Inhibitor
Length = 302
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 21/157 (13%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPAL--VWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLV 113
L+ L HE++ + G D +L V E+ GSL D L + I L L +
Sbjct: 70 LRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYLPRHSIGLAQL--LLFAQQIC 127
Query: 114 RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-------RQKTA 166
GM YLHS H +H NL +RN ++D ++KI D+ L A+ +P R+
Sbjct: 128 EGMAYLHS-QHYIHRNLAARNVLLDNDRLVKIGDFGL-----AKAVPEGHEYYRVREDGD 181
Query: 167 RELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ W APE L++ + DV+SFG+ + E++
Sbjct: 182 SPVFWYAPECLKE----YKFYYASDVWSFGVTLYELL 214
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 79/171 (46%), Gaps = 10/171 (5%)
Query: 42 TIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ-D 96
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L + +
Sbjct: 249 TLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECN 308
Query: 97 EIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDA 156
+++ L + T + M YL + +H NL +RNC++ ++K+ D+ L+
Sbjct: 309 RQEVNAVVLLYMATQISSAMEYLEK-KNFIHRNLAARNCLVGENHLVKVADFGLSRLMTG 367
Query: 157 QNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 368 DTYTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 414
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 277 LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH---- 331
+ WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 380 IKWTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRM 435
Query: 332 -----TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 436 ERPEGCPEKVYELMRACW 453
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 37 PLHGNTIE------LKSKSVDHLLQ-------LQGLRHENLNPFIGFLWDP--TGPALVW 81
PL NT E L+ + +HL L+ L+H+N+ + G + L+
Sbjct: 36 PLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM 95
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARW 141
E+ GSL D L ++D L + + +GM YL + + +H +L +RN +++
Sbjct: 96 EYLPYGSLRDYLQAHAERIDHIKLLQYTSQICKGMEYLGTKRY-IHRDLATRNILVENEN 154
Query: 142 VLKITDYALNSF--YDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIII 199
+KI D+ L D + ++ + W APE L + + S DV+SFG+++
Sbjct: 155 RVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTES----KFSVASDVWSFGVVL 210
Query: 200 QEV 202
E+
Sbjct: 211 YEL 213
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 203 VLQGLRHENLNPFIGFLWDP--TGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDL 260
+L+ L+H+N+ + G + L+ E+ GSL D L ++D L + +
Sbjct: 67 ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQAHAERIDHIKLLQYTSQI 126
Query: 261 VRGMRYLHSVPHRLHELLWTAPELLRDE 288
+GM YL + + +H L T L+ +E
Sbjct: 127 CKGMEYLGTKRY-IHRDLATRNILVENE 153
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 78/171 (45%), Gaps = 10/171 (5%)
Query: 42 TIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ-D 96
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L + +
Sbjct: 252 TLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECN 311
Query: 97 EIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDA 156
++ L + T + M YL + +H NL +RNC++ ++K+ D+ L+
Sbjct: 312 RQEVSAVVLLYMATQISSAMEYLEK-KNFIHRNLAARNCLVGENHLVKVADFGLSRLMTG 370
Query: 157 QNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 371 DTYTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 417
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 277 LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH---- 331
+ WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 383 IKWTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRM 438
Query: 332 -----TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 439 ERPEGCPEKVYELMRACW 456
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 78/152 (51%), Gaps = 11/152 (7%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ G + +V E+ GSL+ L +++ + + +L + GM+YL
Sbjct: 82 HPNIIHLEGVVTKSKPVMIVTEYMENGSLDTFLKKNDGQFTVIQLVGMLRGISAGMKYLS 141
Query: 121 SVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR----ELLWTAPEL 176
+ + +H +L +RN +I++ V K++D+ L+ ++ P T R + WTAPE
Sbjct: 142 DMGY-VHRDLAARNILINSNLVCKVSDFGLSRVL--EDDPEAAYTTRGGKIPIRWTAPEA 198
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ A R + + DV+S+GI++ EVV G R
Sbjct: 199 I---AFR-KFTSASDVWSYGIVMWEVVSYGER 226
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE 315
WTAPE + A R + + DV+S+GI++ EVV GE
Sbjct: 193 WTAPEAI---AFR-KFTSASDVWSYGIVMWEVVSYGE 225
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 101/247 (40%), Gaps = 36/247 (14%)
Query: 60 RHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYL 119
RHEN+ F+G P A++ C +L V+ +I LD + ++V+GM YL
Sbjct: 87 RHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYL 146
Query: 120 HSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARE----LLWTAPE 175
H+ LH +L S+N D V+ ITD+ L S R+ R L APE
Sbjct: 147 HA-KGILHKDLKSKNVFYDNGKVV-ITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPE 204
Query: 176 LLRD-----EAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFLWDPTGP--ALV 228
++R E +L S+ DV++ G I E+ H PF T P A++
Sbjct: 205 IIRQLSPDTEEDKLPFSKHSDVFALGTIWYEL------HAREWPF------KTQPAEAII 252
Query: 229 WEFCC--RGSLEDVLVQDEIK----LDWTFRLSLLTDLVRGMRYLHSVPHRLHEL----- 277
W+ + +L + + EI W F + M L +P R L
Sbjct: 253 WQMGTGMKPNLSQIGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNRRLSHPGH 312
Query: 278 LWTAPEL 284
W + EL
Sbjct: 313 FWKSAEL 319
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 95/195 (48%), Gaps = 11/195 (5%)
Query: 23 KARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWE 82
K +++GD V +K + + T E + + L+ RH N+ F+G++ A+V +
Sbjct: 54 KGKWHGD-VAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYM-TKDNLAIVTQ 111
Query: 83 FCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWV 142
+C SL L E K + + +GM YLH+ + +H ++ S N +
Sbjct: 112 WCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHA-KNIIHRDMKSNNIFLHEGLT 170
Query: 143 LKITDYALNSFYD----AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGII 198
+KI D+ L + +Q + ++ +LW APE++R + + Q DVYS+GI+
Sbjct: 171 VKIGDFGLATVKSRWSGSQQV---EQPTGSVLWMAPEVIRMQDNNPFSFQ-SDVYSYGIV 226
Query: 199 IQEVVLQGLRHENLN 213
+ E++ L + ++N
Sbjct: 227 LYELMTGELPYSHIN 241
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 42/160 (26%)
Query: 202 VVLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLV 261
VL+ RH N+ F+G++ A+V ++C SL L E K + +
Sbjct: 84 AVLRKTRHVNILLFMGYM-TKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTA 142
Query: 262 RGMRYLHS--VPHR--------LHE------------------------------LLWTA 281
+GM YLH+ + HR LHE +LW A
Sbjct: 143 QGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMA 202
Query: 282 PELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCMLS 321
PE++R + + Q DVYS+GI++ E++ P+ ++
Sbjct: 203 PEVIRMQDNNPFSFQ-SDVYSYGIVLYELMTGELPYSHIN 241
>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6
Length = 302
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 21/157 (13%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPAL--VWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLV 113
L+ L HE++ + G D +L V E+ GSL D L + I L L +
Sbjct: 70 LRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYLPRHSIGLAQL--LLFAQQIC 127
Query: 114 RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-------RQKTA 166
GM YLH+ H +H NL +RN ++D ++KI D+ L A+ +P R+
Sbjct: 128 EGMAYLHA-QHYIHRNLAARNVLLDNDRLVKIGDFGL-----AKAVPEGHEYYRVREDGD 181
Query: 167 RELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ W APE L++ + DV+SFG+ + E++
Sbjct: 182 SPVFWYAPECLKE----YKFYYASDVWSFGVTLYELL 214
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 11/152 (7%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ G + +V E+ GSL+ L + + + + +L + GM+YL
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS 164
Query: 121 SVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR----ELLWTAPEL 176
+ + +H +L +RN +I++ V K++D+ L+ ++ P T R + WT+PE
Sbjct: 165 DMGY-VHRDLAARNILINSNLVCKVSDFGLSRVL--EDDPEAAYTTRGGKIPIRWTSPEA 221
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ A+R + + DV+S+GI++ EV+ G R
Sbjct: 222 I---AYR-KFTSASDVWSYGIVLWEVMSYGER 249
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE-PFCMLS 321
WT+PE + A+R + + DV+S+GI++ EV+ GE P+ +S
Sbjct: 216 WTSPEAI---AYR-KFTSASDVWSYGIVLWEVMSYGERPYWEMS 255
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 11/152 (7%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ G + +V E+ GSL+ L + + + + +L + GM+YL
Sbjct: 103 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS 162
Query: 121 SVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR----ELLWTAPEL 176
+ + +H +L +RN +I++ V K++D+ L+ ++ P T R + WT+PE
Sbjct: 163 DMGY-VHRDLAARNILINSNLVCKVSDFGLSRVL--EDDPEAAYTTRGGKIPIRWTSPEA 219
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ A+R + + DV+S+GI++ EV+ G R
Sbjct: 220 I---AYR-KFTSASDVWSYGIVLWEVMSYGER 247
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE-PFCMLS 321
WT+PE + A+R + + DV+S+GI++ EV+ GE P+ +S
Sbjct: 214 WTSPEAI---AYR-KFTSASDVWSYGIVLWEVMSYGERPYWEMS 253
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 11/152 (7%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ G + +V E+ GSL+ L + + + + +L + GM+YL
Sbjct: 93 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS 152
Query: 121 SVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR----ELLWTAPEL 176
+ + +H +L +RN +I++ V K++D+ L+ ++ P T R + WT+PE
Sbjct: 153 DMGY-VHRDLAARNILINSNLVCKVSDFGLSRVL--EDDPEAAYTTRGGKIPIRWTSPEA 209
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ A+R + + DV+S+GI++ EV+ G R
Sbjct: 210 I---AYR-KFTSASDVWSYGIVLWEVMSYGER 237
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE-PFCMLS 321
WT+PE + A+R + + DV+S+GI++ EV+ GE P+ +S
Sbjct: 204 WTSPEAI---AYR-KFTSASDVWSYGIVLWEVMSYGERPYWEMS 243
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 11/152 (7%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ G + +V E+ GSL+ L + + + + +L + GM+YL
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS 164
Query: 121 SVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR----ELLWTAPEL 176
+ + +H +L +RN +I++ V K++D+ L+ ++ P T R + WT+PE
Sbjct: 165 DMGY-VHRDLAARNILINSNLVCKVSDFGLSRVL--EDDPEAAYTTRGGKIPIRWTSPEA 221
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ A+R + + DV+S+GI++ EV+ G R
Sbjct: 222 I---AYR-KFTSASDVWSYGIVLWEVMSYGER 249
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE-PFCMLS 321
WT+PE + A+R + + DV+S+GI++ EV+ GE P+ +S
Sbjct: 216 WTSPEAI---AYR-KFTSASDVWSYGIVLWEVMSYGERPYWEMS 255
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 11/152 (7%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ G + +V E+ GSL+ L + + + + +L + GM+YL
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS 164
Query: 121 SVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR----ELLWTAPEL 176
+ + +H +L +RN +I++ V K++D+ L+ ++ P T R + WT+PE
Sbjct: 165 DMGY-VHRDLAARNILINSNLVCKVSDFGLSRVL--EDDPEAAYTTRGGKIPIRWTSPEA 221
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ A+R + + DV+S+GI++ EV+ G R
Sbjct: 222 I---AYR-KFTSASDVWSYGIVLWEVMSYGER 249
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE-PFCMLS 321
WT+PE + A+R + + DV+S+GI++ EV+ GE P+ +S
Sbjct: 216 WTSPEAI---AYR-KFTSASDVWSYGIVLWEVMSYGERPYWEMS 255
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 11/152 (7%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ G + +V E+ GSL+ L + + + + +L + GM+YL
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS 164
Query: 121 SVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR----ELLWTAPEL 176
+ + +H +L +RN +I++ V K++D+ L+ ++ P T R + WT+PE
Sbjct: 165 DMGY-VHRDLAARNILINSNLVCKVSDFGLSRVL--EDDPEAAYTTRGGKIPIRWTSPEA 221
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ A+R + + DV+S+GI++ EV+ G R
Sbjct: 222 I---AYR-KFTSASDVWSYGIVLWEVMSYGER 249
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE-PFCMLS 321
WT+PE + A+R + + DV+S+GI++ EV+ GE P+ +S
Sbjct: 216 WTSPEAI---AYR-KFTSASDVWSYGIVLWEVMSYGERPYWEMS 255
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 11/152 (7%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ G + +V E+ GSL+ L + + + + +L + GM+YL
Sbjct: 76 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS 135
Query: 121 SVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR----ELLWTAPEL 176
+ + +H +L +RN +I++ V K++D+ L+ ++ P T R + WT+PE
Sbjct: 136 DMGY-VHRDLAARNILINSNLVCKVSDFGLSRVL--EDDPEAAYTTRGGKIPIRWTSPEA 192
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ A+R + + DV+S+GI++ EV+ G R
Sbjct: 193 I---AYR-KFTSASDVWSYGIVLWEVMSYGER 220
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE-PFCMLS 321
WT+PE + A+R + + DV+S+GI++ EV+ GE P+ +S
Sbjct: 187 WTSPEAI---AYR-KFTSASDVWSYGIVLWEVMSYGERPYWEMS 226
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 85/188 (45%), Gaps = 17/188 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 42 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 101
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ ++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 102 NRQEVSAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 160
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPF 215
+ WTAPE L ++ DV++FG+++ E+ G ++P+
Sbjct: 161 GDTFTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYG-----MSPY 211
Query: 216 IGFLWDPT 223
G DP+
Sbjct: 212 PGI--DPS 217
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 48 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 107
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ +++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 108 NRQEVNAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 166
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 167 GDTYTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 214
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH------ 331
WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 182 WTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER 237
Query: 332 ---TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 238 PEGCPEKVYELMRACW 253
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 49 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 108
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ +++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 109 NRQEVNAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 167
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 168 GDTXTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 215
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH------ 331
WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 183 WTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER 238
Query: 332 ---TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 239 PEGCPEKVYELMRACW 254
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 49 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 108
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ +++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 109 NRQEVNAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 167
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 168 GDTYTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 215
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH------ 331
WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 183 WTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER 238
Query: 332 ---TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 239 PEGCPEKVYELMRACW 254
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 44 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 103
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ +++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 104 NRQEVNAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 162
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 163 GDTYTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 210
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH------ 331
WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 178 WTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER 233
Query: 332 ---TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 234 PEGCPEKVYELMRACW 249
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 79 LVWEFCCRGSLEDVLVQDE-IKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVI 137
++ EF +GSL D L DE K + + GM ++ + +H +L + N ++
Sbjct: 259 IITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNY-IHRDLRAANILV 317
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGI 197
A V KI D+ L + R+ + WTAPE + + ++ DV+SFGI
Sbjct: 318 SASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIK----SDVWSFGI 373
Query: 198 IIQEVVLQG 206
++ E+V G
Sbjct: 374 LLMEIVTYG 382
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/172 (19%), Positives = 70/172 (40%), Gaps = 47/172 (27%)
Query: 184 LRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFLW-DPTGPALVWEFCCRGSLEDVLV 242
++ +PG + + + V++ L+H+ L + +P ++ EF +GSL D L
Sbjct: 217 VKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPI--YIITEFMAKGSLLDFLK 274
Query: 243 QDEIK-------LDWTFRLSLLTDLVRGMRYLH------------SVPHRLHE------- 276
DE +D++ +++ + Y+H S+ ++ +
Sbjct: 275 SDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVI 334
Query: 277 --------------LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
+ WTAPE + + ++ DV+SFGI++ E+V G
Sbjct: 335 EDNEYTAREGAKFPIKWTAPEAINFGSFTIKS----DVWSFGILLMEIVTYG 382
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 49 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 108
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ +++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 109 NRQEVNAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 167
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 168 GDTYTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 215
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH------ 331
WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 183 WTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER 238
Query: 332 ---TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 239 PEGCPEKVYELMRACW 254
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 57 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 116
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ +++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 117 NRQEVNAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 175
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 176 GDTYTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 223
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH------ 331
WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 191 WTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER 246
Query: 332 ---TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 247 PEGCPEKVYELMRACW 262
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 46 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 105
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ +++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 106 NRQEVNAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 164
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 165 GDTYTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 212
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH------ 331
WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 180 WTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER 235
Query: 332 ---TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 236 PEGCPEKVYELMRACW 251
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 44 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 103
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ +++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 104 NRQEVNAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 162
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 163 GDTYTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 210
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH------ 331
WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 178 WTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER 233
Query: 332 ---TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 234 PEGCPEKVYELMRACW 249
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 45 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLREC 104
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ +++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 105 NRQEVNAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 163
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 164 GDTXTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 211
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH------ 331
WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 179 WTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER 234
Query: 332 ---TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 235 PEGCPEKVYELMRACW 250
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 49 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLREC 108
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ +++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 109 NRQEVNAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 167
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 168 GDTYTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 215
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH------ 331
WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 183 WTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER 238
Query: 332 ---TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 239 PEGCPEKVYELMRACW 254
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 79 LVWEFCCRGSLEDVLVQDE-IKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVI 137
++ EF +GSL D L DE K + + GM ++ + +H +L + N ++
Sbjct: 86 IITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNY-IHRDLRAANILV 144
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGI 197
A V KI D+ L + R+ + WTAPE + + ++ DV+SFGI
Sbjct: 145 SASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIK----SDVWSFGI 200
Query: 198 IIQEVVLQG 206
++ E+V G
Sbjct: 201 LLMEIVTYG 209
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
WTAPE + + ++ DV+SFGI++ E+V G
Sbjct: 178 WTAPEAINFGSFTIKS----DVWSFGILLMEIVTYG 209
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 46 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 105
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ +++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 106 NRQEVNAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 164
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 165 GDTYTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 212
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH------ 331
WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 180 WTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER 235
Query: 332 ---TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 236 PEGCPEKVYELMRACW 251
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 11/152 (7%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ G + +V E+ GSL+ L + + + + +L + GM+YL
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS 164
Query: 121 SVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR----ELLWTAPEL 176
+ + +H +L +RN +I++ V K++D+ L ++ P T R + WT+PE
Sbjct: 165 DMGY-VHRDLAARNILINSNLVCKVSDFGLGRVL--EDDPEAAYTTRGGKIPIRWTSPEA 221
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ A+R + + DV+S+GI++ EV+ G R
Sbjct: 222 I---AYR-KFTSASDVWSYGIVLWEVMSYGER 249
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE-PFCMLS 321
WT+PE + A+R + + DV+S+GI++ EV+ GE P+ +S
Sbjct: 216 WTSPEAI---AYR-KFTSASDVWSYGIVLWEVMSYGERPYWEMS 255
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 85/188 (45%), Gaps = 17/188 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 42 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 101
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ ++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 102 NRQEVSAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 160
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPF 215
+ WTAPE L ++ DV++FG+++ E+ G ++P+
Sbjct: 161 GDTXTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYG-----MSPY 211
Query: 216 IGFLWDPT 223
G DP+
Sbjct: 212 PGI--DPS 217
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 85/188 (45%), Gaps = 17/188 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 42 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLREC 101
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ ++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 102 NRQEVSAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 160
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPF 215
+ WTAPE L ++ DV++FG+++ E+ G ++P+
Sbjct: 161 GDTXTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYG-----MSPY 211
Query: 216 IGFLWDPT 223
G DP+
Sbjct: 212 PGI--DPS 217
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 9/151 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPAL--VWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLV 113
L+ L + + + G + P +L V E+ G L D L + +LD + L + +
Sbjct: 65 LKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQIC 124
Query: 114 RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSF--YDAQNIPPRQKTARELLW 171
+GM YL S +H +L +RN ++++ +KI D+ L D R+ + W
Sbjct: 125 KGMEYLGSR-RCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFW 183
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEV 202
APE L D S+ DV+SFG+++ E+
Sbjct: 184 YAPESLSDNIF----SRQSDVWSFGVVLYEL 210
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 79/204 (38%), Gaps = 55/204 (26%)
Query: 183 RLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFLWDPTGPAL--VWEFCCRGSLEDV 240
+L+ S P F IQ +L+ L + + + G + P +L V E+ G L D
Sbjct: 46 QLQHSGPDQQRDFQREIQ--ILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDF 103
Query: 241 LVQDEIKLDWTFRLSLLTDLVRGMRYLHS--VPHR---------------------LHEL 277
L + +LD + L + + +GM YL S HR L +L
Sbjct: 104 LQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKL 163
Query: 278 L------------------WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCM 319
L W APE L D S+ DV+SFG+++ E+ +C
Sbjct: 164 LPLDKDYYVVREPGQSPIFWYAPESLSDNIF----SRQSDVWSFGVVLYELFT----YCD 215
Query: 320 LSLTPEGKLVRH--TPQAVPVFQR 341
S +P + +R + + VP R
Sbjct: 216 KSCSPSAEFLRMMGSERDVPALSR 239
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 11/152 (7%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ G + +V E+ GSL+ L + + + + +L + GM+YL
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS 164
Query: 121 SVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR----ELLWTAPEL 176
+ + +H +L +RN +I++ V K++D+ L ++ P T R + WT+PE
Sbjct: 165 DMGY-VHRDLAARNILINSNLVCKVSDFGLARVL--EDDPEAAYTTRGGKIPIRWTSPEA 221
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ A+R + + DV+S+GI++ EV+ G R
Sbjct: 222 I---AYR-KFTSASDVWSYGIVLWEVMSYGER 249
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE-PFCMLS 321
WT+PE + A+R + + DV+S+GI++ EV+ GE P+ +S
Sbjct: 216 WTSPEAI---AYR-KFTSASDVWSYGIVLWEVMSYGERPYWEMS 255
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 78/172 (45%), Gaps = 10/172 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 49 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 108
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ ++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 109 NRQEVSAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 167
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 168 GDTYTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 215
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH------ 331
WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 183 WTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER 238
Query: 332 ---TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 239 PEGCPEKVYELMRACW 254
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 78/172 (45%), Gaps = 10/172 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 44 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 103
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ ++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 104 NRQEVSAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 162
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 163 GDTYTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 210
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH------ 331
WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 178 WTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER 233
Query: 332 ---TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 234 PEGCPEKVYELMRACW 249
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 78/172 (45%), Gaps = 10/172 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 44 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLREC 103
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ ++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 104 NRQEVSAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 162
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 163 GDTYTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 210
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH------ 331
WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 178 WTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER 233
Query: 332 ---TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 234 PEGCPEKVYELMRACW 249
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 78/172 (45%), Gaps = 10/172 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 44 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 103
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ ++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 104 NRQEVSAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 162
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 163 GDTYTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 210
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH------ 331
WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 178 WTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER 233
Query: 332 ---TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 234 PEGCPEKVYELMRACW 249
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 9/151 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPAL--VWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLV 113
L+ L + + + G + P +L V E+ G L D L + +LD + L + +
Sbjct: 78 LKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQIC 137
Query: 114 RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSF--YDAQNIPPRQKTARELLW 171
+GM YL S +H +L +RN ++++ +KI D+ L D R+ + W
Sbjct: 138 KGMEYLGSR-RCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFW 196
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEV 202
APE L D S+ DV+SFG+++ E+
Sbjct: 197 YAPESLSDNIF----SRQSDVWSFGVVLYEL 223
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 53/191 (27%)
Query: 183 RLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFLWDPTGPAL--VWEFCCRGSLEDV 240
+L+ S P F IQ +L+ L + + + G + P +L V E+ G L D
Sbjct: 59 QLQHSGPDQQRDFQREIQ--ILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDF 116
Query: 241 LVQDEIKLDWTFRLSLLTDLVRGMRYLHS--VPHR---------------------LHEL 277
L + +LD + L + + +GM YL S HR L +L
Sbjct: 117 LQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKL 176
Query: 278 L------------------WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCM 319
L W APE L D S+ DV+SFG+++ E+ +C
Sbjct: 177 LPLDKDYYVVREPGQSPIFWYAPESLSDNIF----SRQSDVWSFGVVLYELFT----YCD 228
Query: 320 LSLTPEGKLVR 330
S +P + +R
Sbjct: 229 KSCSPSAEFLR 239
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 78/172 (45%), Gaps = 10/172 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 44 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLREC 103
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ ++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 104 NRQEVSAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 162
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 163 GDTYTAHAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 210
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH------ 331
WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 178 WTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER 233
Query: 332 ---TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 234 PEGCPEKVYELMRACW 249
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 45 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 104
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ +++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 105 NRQEVNAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 163
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 164 GDTYTAPAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 211
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH------ 331
WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 179 WTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER 234
Query: 332 ---TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 235 PEGCPEKVYELMRACW 250
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G ++ EF G+L D L +
Sbjct: 46 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 105
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ +++ L + T + M YL + +H +L +RNC++ ++K+ D+ L+
Sbjct: 106 NRQEVNAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 164
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 165 GDTYTAPAGAKFPIKWTAPESLAYNKFSIK----SDVWAFGVLLWEIATYGM 212
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG-EPFCMLSLTPEGKLVRH------ 331
WTAPE L ++ DV++FG+++ E+ G P+ + L+ +L+
Sbjct: 180 WTAPESLAYNKFSIKS----DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER 235
Query: 332 ---TPQAVPVFQRACY 344
P+ V RAC+
Sbjct: 236 PEGCPEKVYELMRACW 251
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 9/151 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPAL--VWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLV 113
L+ L + + + G + P +L V E+ G L D L + +LD + L + +
Sbjct: 66 LKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQIC 125
Query: 114 RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSF--YDAQNIPPRQKTARELLW 171
+GM YL S +H +L +RN ++++ +KI D+ L D R+ + W
Sbjct: 126 KGMEYLGSR-RCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFW 184
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEV 202
APE L D S+ DV+SFG+++ E+
Sbjct: 185 YAPESLSDNIF----SRQSDVWSFGVVLYEL 211
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 53/191 (27%)
Query: 183 RLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFLWDPTGPAL--VWEFCCRGSLEDV 240
+L+ S P F IQ +L+ L + + + G + P +L V E+ G L D
Sbjct: 47 QLQHSGPDQQRDFQREIQ--ILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDF 104
Query: 241 LVQDEIKLDWTFRLSLLTDLVRGMRYLHS--VPHR---------------------LHEL 277
L + +LD + L + + +GM YL S HR L +L
Sbjct: 105 LQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKL 164
Query: 278 L------------------WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCM 319
L W APE L D S+ DV+SFG+++ E+ +C
Sbjct: 165 LPLDKDYYVVREPGQSPIFWYAPESLSDNIF----SRQSDVWSFGVVLYELFT----YCD 216
Query: 320 LSLTPEGKLVR 330
S +P + +R
Sbjct: 217 KSCSPSAEFLR 227
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 11/152 (7%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ G + +V E+ GSL+ L + + + + +L + GM+YL
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS 164
Query: 121 SVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR----ELLWTAPEL 176
+ +H +L +RN +I++ V K++D+ L+ ++ P T R + WT+PE
Sbjct: 165 DMGF-VHRDLAARNILINSNLVCKVSDFGLSRVL--EDDPEAAYTTRGGKIPIRWTSPEA 221
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ A+R + + DV+S+GI++ EV+ G R
Sbjct: 222 I---AYR-KFTSASDVWSYGIVLWEVMSYGER 249
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE-PFCMLS 321
WT+PE + A+R + + DV+S+GI++ EV+ GE P+ +S
Sbjct: 216 WTSPEAI---AYR-KFTSASDVWSYGIVLWEVMSYGERPYWEMS 255
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 9/168 (5%)
Query: 43 IELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEI 98
I+ S S D ++ + L HE L G ++ E+ G L + L +
Sbjct: 41 IKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH 100
Query: 99 KLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQN 158
+ L + D+ M YL S LH +L +RNC+++ + V+K++D+ L+ +
Sbjct: 101 RFQTQQLLEMCKDVCEAMEYLES-KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE 159
Query: 159 IPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ + + W+ PE+L + S D+++FG+++ E+ G
Sbjct: 160 YTSSRGSKFPVRWSPPEVLMYS----KFSSKSDIWAFGVLMWEIYSLG 203
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTG-PALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 114
++ H N+ +G G P +V + G L + + + + + +
Sbjct: 84 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 143
Query: 115 GMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTAREL--LW 171
GM+YL S +H +L +RNC++D ++ +K+ D+ L YD + KT +L W
Sbjct: 144 GMKYLAS-KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNKTGAKLPVKW 202
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
A E L+ + + + DV+SFG+++ E++ +G
Sbjct: 203 MALESLQTQ----KFTTKSDVWSFGVLLWELMTRG 233
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVID 138
+V E+ GSL+ L + + + +L + GMRYL + + +H +L +RN ++D
Sbjct: 127 IVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGY-VHRDLAARNVLVD 185
Query: 139 ARWVLKITDYALNSFYDAQNIPPRQKTAREL--LWTAPELLRDEAHRLRGSQPGDVYSFG 196
+ V K++D+ L+ + T ++ WTAPE + S DV+SFG
Sbjct: 186 SNLVCKVSDFGLSRVLEDDPDAAXTTTGGKIPIRWTAPEAIAFRTF----SSASDVWSFG 241
Query: 197 IIIQEVVLQGLR 208
+++ EV+ G R
Sbjct: 242 VVMWEVLAYGER 253
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE 315
WTAPE + S DV+SFG+++ EV+ GE
Sbjct: 220 WTAPEAIAFRTF----SSASDVWSFGVVMWEVLAYGE 252
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTG-PALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 114
++ H N+ +G G P +V + G L + + + + + +
Sbjct: 85 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 144
Query: 115 GMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTAREL--LW 171
GM+YL S +H +L +RNC++D ++ +K+ D+ L YD + KT +L W
Sbjct: 145 GMKYLAS-KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 203
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
A E L+ + + + DV+SFG+++ E++ +G
Sbjct: 204 MALESLQTQ----KFTTKSDVWSFGVLLWELMTRG 234
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 11/152 (7%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ G + +V E GSL+ L + + + + +L + GM+YL
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS 164
Query: 121 SVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR----ELLWTAPEL 176
+ + +H +L +RN +I++ V K++D+ L+ ++ P T R + WT+PE
Sbjct: 165 DMGY-VHRDLAARNILINSNLVCKVSDFGLSRVL--EDDPEAAYTTRGGKIPIRWTSPEA 221
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ A+R + + DV+S+GI++ EV+ G R
Sbjct: 222 I---AYR-KFTSASDVWSYGIVLWEVMSYGER 249
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE-PFCMLS 321
WT+PE + A+R + + DV+S+GI++ EV+ GE P+ +S
Sbjct: 216 WTSPEAI---AYR-KFTSASDVWSYGIVLWEVMSYGERPYWEMS 255
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 79/152 (51%), Gaps = 11/152 (7%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ G + ++ E+ GSL+ L +++ + + +L + GM+YL
Sbjct: 68 HPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLS 127
Query: 121 SVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR----ELLWTAPEL 176
+ + +H +L +RN ++++ V K++D+ ++ ++ P T R + WTAPE
Sbjct: 128 DMSY-VHRDLAARNILVNSNLVCKVSDFGMSRVL--EDDPEAAYTTRGGKIPIRWTAPEA 184
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ A+R + + DV+S+GI++ EV+ G R
Sbjct: 185 I---AYR-KFTSASDVWSYGIVMWEVMSYGER 212
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE 315
WTAPE + A+R + + DV+S+GI++ EV+ GE
Sbjct: 179 WTAPEAI---AYR-KFTSASDVWSYGIVMWEVMSYGE 211
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTG-PALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 114
++ H N+ +G G P +V + G L + + + + + +
Sbjct: 85 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 144
Query: 115 GMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTAREL--LW 171
GM+YL S +H +L +RNC++D ++ +K+ D+ L YD + KT +L W
Sbjct: 145 GMKYLAS-KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 203
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
A E L+ + + + DV+SFG+++ E++ +G
Sbjct: 204 MALESLQTQ----KFTTKSDVWSFGVLLWELMTRG 234
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEP 316
W A E L+ + + + DV+SFG+++ E++ RG P
Sbjct: 203 WMALESLQTQ----KFTTKSDVWSFGVLLWELMTRGAP 236
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 11/152 (7%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ G + +V E GSL+ L + + + + +L + GM+YL
Sbjct: 76 HPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS 135
Query: 121 SVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR----ELLWTAPEL 176
+ + +H +L +RN +I++ V K++D+ L+ ++ P T R + WT+PE
Sbjct: 136 DMGY-VHRDLAARNILINSNLVCKVSDFGLSRVL--EDDPEAAYTTRGGKIPIRWTSPEA 192
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ A+R + + DV+S+GI++ EV+ G R
Sbjct: 193 I---AYR-KFTSASDVWSYGIVLWEVMSYGER 220
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE-PFCMLS 321
WT+PE + A+R + + DV+S+GI++ EV+ GE P+ +S
Sbjct: 187 WTSPEAI---AYR-KFTSASDVWSYGIVLWEVMSYGERPYWEMS 226
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTG-PALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 114
++ H N+ +G G P +V + G L + + + + + +
Sbjct: 83 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 142
Query: 115 GMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTAREL--LW 171
GM+YL S +H +L +RNC++D ++ +K+ D+ L YD + KT +L W
Sbjct: 143 GMKYLAS-KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 201
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
A E L+ + + + DV+SFG+++ E++ +G
Sbjct: 202 MALESLQTQ----KFTTKSDVWSFGVLLWELMTRG 232
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTG-PALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 114
++ H N+ +G G P +V + G L + + + + + +
Sbjct: 84 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 143
Query: 115 GMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTAREL--LW 171
GM+YL S +H +L +RNC++D ++ +K+ D+ L YD + KT +L W
Sbjct: 144 GMKYLAS-KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 202
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
A E L+ + + + DV+SFG+++ E++ +G
Sbjct: 203 MALESLQTQ----KFTTKSDVWSFGVLLWELMTRG 233
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 79/152 (51%), Gaps = 11/152 (7%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ G + ++ E+ GSL+ L +++ + + +L + GM+YL
Sbjct: 74 HPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLS 133
Query: 121 SVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR----ELLWTAPEL 176
+ + +H +L +RN ++++ V K++D+ ++ ++ P T R + WTAPE
Sbjct: 134 DMSY-VHRDLAARNILVNSNLVCKVSDFGMSRVL--EDDPEAAYTTRGGKIPIRWTAPEA 190
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ A+R + + DV+S+GI++ EV+ G R
Sbjct: 191 I---AYR-KFTSASDVWSYGIVMWEVMSYGER 218
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE 315
WTAPE + A+R + + DV+S+GI++ EV+ GE
Sbjct: 185 WTAPEAI---AYR-KFTSASDVWSYGIVMWEVMSYGE 217
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTG-PALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 114
++ H N+ +G G P +V + G L + + + + + +
Sbjct: 77 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 136
Query: 115 GMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTAREL--LW 171
GM+YL S +H +L +RNC++D ++ +K+ D+ L YD + KT +L W
Sbjct: 137 GMKYLAS-KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 195
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
A E L+ + + + DV+SFG+++ E++ +G
Sbjct: 196 MALESLQTQ----KFTTKSDVWSFGVLLWELMTRG 226
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTG-PALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 114
++ H N+ +G G P +V + G L + + + + + +
Sbjct: 82 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 141
Query: 115 GMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTAREL--LW 171
GM+YL S +H +L +RNC++D ++ +K+ D+ L YD + KT +L W
Sbjct: 142 GMKYLAS-KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 200
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
A E L+ + + + DV+SFG+++ E++ +G
Sbjct: 201 MALESLQTQ----KFTTKSDVWSFGVLLWELMTRG 231
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTG-PALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 114
++ H N+ +G G P +V + G L + + + + + +
Sbjct: 80 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 139
Query: 115 GMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTAREL--LW 171
GM+YL S +H +L +RNC++D ++ +K+ D+ L YD + KT +L W
Sbjct: 140 GMKYLAS-KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 198
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
A E L+ + + + DV+SFG+++ E++ +G
Sbjct: 199 MALESLQTQ----KFTTKSDVWSFGVLLWELMTRG 229
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 78/172 (45%), Gaps = 10/172 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ- 95
T++ + V+ L+ ++ ++H NL +G +V E+ G+L D L +
Sbjct: 63 KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNLLDYLREC 122
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
+ ++ L + T + M YL + +H +L +RNC++ V+K+ D+ L+
Sbjct: 123 NREEVTAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLVGENHVVKVADFGLSRLMT 181
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
+ WTAPE L ++ DV++FG+++ E+ G+
Sbjct: 182 GDTYTAHAGAKFPIKWTAPESLAYNTFSIK----SDVWAFGVLLWEIATYGM 229
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVID 138
+V E+ GSL+ L + + + +L + GMRYL + + +H +L +RN ++D
Sbjct: 127 IVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGY-VHRDLAARNVLVD 185
Query: 139 ARWVLKITDYALNSFYDAQNIPPRQKTAREL--LWTAPELLRDEAHRLRGSQPGDVYSFG 196
+ V K++D+ L+ + T ++ WTAPE + S DV+SFG
Sbjct: 186 SNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTF----SSASDVWSFG 241
Query: 197 IIIQEVVLQGLR 208
+++ EV+ G R
Sbjct: 242 VVMWEVLAYGER 253
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE 315
WTAPE + S DV+SFG+++ EV+ GE
Sbjct: 220 WTAPEAIAFRTF----SSASDVWSFGVVMWEVLAYGE 252
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + S + LQ ++ LRHE L + + +V E+ +GSL D L +
Sbjct: 38 KTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP-IXIVTEYMSKGSLLDFLKGE 96
Query: 97 EIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
K RL L D+ GM Y+ + + +H +L + N ++ V K+ D+ L
Sbjct: 97 TGKY---LRLPQLVDMAAQIASGMAYVERMNY-VHRDLRAANILVGENLVCKVADFGLAR 152
Query: 153 FYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ RQ + WTAPE A R + DV+SFGI++ E+ +G
Sbjct: 153 LIEDNEXTARQGAKFPIKWTAPEA----ALYGRFTIKSDVWSFGILLTELTTKG 202
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTG-PALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 114
++ H N+ +G G P +V + G L + + + + + +
Sbjct: 104 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 163
Query: 115 GMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTAREL--LW 171
GM+YL S +H +L +RNC++D ++ +K+ D+ L YD + KT +L W
Sbjct: 164 GMKYLAS-KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 222
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
A E L+ + + + DV+SFG+++ E++ +G
Sbjct: 223 MALESLQTQ----KFTTKSDVWSFGVLLWELMTRG 253
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEP 316
W A E L+ + + + DV+SFG+++ E++ RG P
Sbjct: 222 WMALESLQTQ----KFTTKSDVWSFGVLLWELMTRGAP 255
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTG-PALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 114
++ H N+ +G G P +V + G L + + + + + +
Sbjct: 103 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 162
Query: 115 GMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTAREL--LW 171
GM+YL S +H +L +RNC++D ++ +K+ D+ L YD + KT +L W
Sbjct: 163 GMKYLAS-KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 221
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
A E L+ + + + DV+SFG+++ E++ +G
Sbjct: 222 MALESLQTQ----KFTTKSDVWSFGVLLWELMTRG 252
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + S + LQ ++ LRHE L + + +V E+ +GSL D L +
Sbjct: 48 KTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGE 106
Query: 97 EIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
K RL L D+ GM Y+ + + +H +L + N ++ V K+ D+ L
Sbjct: 107 MGKY---LRLPQLVDMAAQIASGMAYVERMNY-VHRDLAAANILVGENLVCKVADFGLAR 162
Query: 153 FYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ RQ + WTAPE A R + DV+SFGI++ E+ +G
Sbjct: 163 LIEDNEYTARQGAKFPIKWTAPE----AALYGRFTIKSDVWSFGILLTELTTKG 212
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + S + LQ ++ LRHE L + + +V E+ +GSL D L +
Sbjct: 214 KTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP-IYIVGEYMSKGSLLDFLKGE 272
Query: 97 EIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
K RL L D+ GM Y+ + + +H +L + N ++ V K+ D+ L
Sbjct: 273 TGKY---LRLPQLVDMAAQIASGMAYVERMNY-VHRDLRAANILVGENLVCKVADFGLAR 328
Query: 153 FYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ RQ + WTAPE A R + DV+SFGI++ E+ +G
Sbjct: 329 LIEDNEYTARQGAKFPIKWTAPEA----ALYGRFTIKSDVWSFGILLTELTTKG 378
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + S + LQ ++ LRHE L + + +V E+ +GSL D L +
Sbjct: 214 KTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGE 272
Query: 97 EIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
K RL L D+ GM Y+ + + +H +L + N ++ V K+ D+ L
Sbjct: 273 TGKY---LRLPQLVDMAAQIASGMAYVERMNY-VHRDLRAANILVGENLVCKVADFGLAR 328
Query: 153 FYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ RQ + WTAPE A R + DV+SFGI++ E+ +G
Sbjct: 329 LIEDNEYTARQGAKFPIKWTAPEA----ALYGRFTIKSDVWSFGILLTELTTKG 378
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + S + LQ ++ LRHE L + + +V E+ +GSL D L +
Sbjct: 41 KTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGE 99
Query: 97 EIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
K RL L D+ GM Y+ + + +H +L + N ++ V K+ D+ L
Sbjct: 100 TGKY---LRLPQLVDMAAQIASGMAYVERMNY-VHRDLRAANILVGENLVCKVADFGLAR 155
Query: 153 FYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ RQ + WTAPE A R + DV+SFGI++ E+ +G
Sbjct: 156 LIEDNEYTARQGAKFPIKWTAPEA----ALYGRFTIKSDVWSFGILLTELTTKG 205
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
Query: 43 IELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEI 98
I+ S S D ++ + L HE L G ++ E+ G L + L +
Sbjct: 36 IKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH 95
Query: 99 KLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQN 158
+ L + D+ M YL S LH +L +RNC+++ + V+K++D+ L+ +
Sbjct: 96 RFQTQQLLEMCKDVCEAMEYLES-KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE 154
Query: 159 IPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ + W+ PE+L + S D+++FG+++ E+ G
Sbjct: 155 YTSSVGSKFPVRWSPPEVLMYS----KFSSKSDIWAFGVLMWEIYSLG 198
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + S + LQ ++ LRHE L + + +V E+ +GSL D L +
Sbjct: 214 KTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGE 272
Query: 97 EIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
K RL L D+ GM Y+ + + +H +L + N ++ V K+ D+ L
Sbjct: 273 TGKY---LRLPQLVDMAAQIASGMAYVERMNY-VHRDLRAANILVGENLVCKVADFGLAR 328
Query: 153 FYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ RQ + WTAPE A R + DV+SFGI++ E+ +G
Sbjct: 329 LIEDNEYTARQGAKFPIKWTAPEA----ALYGRFTIKSDVWSFGILLTELTTKG 378
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
Query: 43 IELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEI 98
I+ S S D ++ + L HE L G ++ E+ G L + L +
Sbjct: 56 IKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH 115
Query: 99 KLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQN 158
+ L + D+ M YL S LH +L +RNC+++ + V+K++D+ L+ +
Sbjct: 116 RFQTQQLLEMCKDVCEAMEYLES-KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE 174
Query: 159 IPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ + W+ PE+L + S D+++FG+++ E+ G
Sbjct: 175 YTSSVGSKFPVRWSPPEVLMYS----KFSSKSDIWAFGVLMWEIYSLG 218
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + S + LQ ++ LRHE L + + +V E+ +GSL D L +
Sbjct: 297 KTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGE 355
Query: 97 EIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
K RL L D+ GM Y+ + + +H +L + N ++ V K+ D+ L
Sbjct: 356 TGKY---LRLPQLVDMAAQIASGMAYVERMNY-VHRDLRAANILVGENLVCKVADFGLAR 411
Query: 153 FYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ RQ + WTAPE A R + DV+SFGI++ E+ +G
Sbjct: 412 LIEDNEYTARQGAKFPIKWTAPEA----ALYGRFTIKSDVWSFGILLTELTTKG 461
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 90/183 (49%), Gaps = 13/183 (7%)
Query: 34 KPVPLHGNTIE---LKSKSVDHLLQ---LQGLRHENLNPFIGFLWDPTGPALVWEFCCRG 87
K VP+ T++ + + VD L + + H N+ G + ++ E+ G
Sbjct: 72 KEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENG 131
Query: 88 SLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITD 147
+L+ L + + + + +L + GM+YL ++ + +H +L +RN ++++ V K++D
Sbjct: 132 ALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNY-VHRDLAARNILVNSNLVCKVSD 190
Query: 148 YALNSFY--DAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQ 205
+ L+ D + + WTAPE + ++R + + DV+SFGI++ EV+
Sbjct: 191 FGLSRVLEDDPEATYTTSGGKIPIRWTAPEAI---SYR-KFTSASDVWSFGIVMWEVMTY 246
Query: 206 GLR 208
G R
Sbjct: 247 GER 249
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE-PFCMLS 321
WTAPE + ++R + + DV+SFGI++ EV+ GE P+ LS
Sbjct: 216 WTAPEAI---SYR-KFTSASDVWSFGIVMWEVMTYGERPYWELS 255
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLV-- 113
++ LRHE L + + +V E+ +GSL D L + K RL L D+
Sbjct: 234 MKKLRHEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGEMGKY---LRLPQLVDMAAQ 289
Query: 114 --RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLW 171
GM Y+ + + +H +L + N ++ V K+ D+ L + RQ + W
Sbjct: 290 IASGMAYVERMNY-VHRDLRAANILVGENLVCKVADFGLGRLIEDNEYTARQGAKFPIKW 348
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
TAPE A R + DV+SFGI++ E+ +G
Sbjct: 349 TAPEA----ALYGRFTIKSDVWSFGILLTELTTKG 379
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
Query: 43 IELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEI 98
I+ S S D ++ + L HE L G ++ E+ G L + L +
Sbjct: 47 IKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH 106
Query: 99 KLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQN 158
+ L + D+ M YL S LH +L +RNC+++ + V+K++D+ L+ +
Sbjct: 107 RFQTQQLLEMCKDVCEAMEYLES-KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE 165
Query: 159 IPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ + W+ PE+L + S D+++FG+++ E+ G
Sbjct: 166 YTSSVGSKFPVRWSPPEVLMYS----KFSSKSDIWAFGVLMWEIYSLG 209
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
Query: 43 IELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEI 98
I+ S S D ++ + L HE L G ++ E+ G L + L +
Sbjct: 40 IKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH 99
Query: 99 KLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQN 158
+ L + D+ M YL S LH +L +RNC+++ + V+K++D+ L+ +
Sbjct: 100 RFQTQQLLEMCKDVCEAMEYLES-KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE 158
Query: 159 IPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ + W+ PE+L + S D+++FG+++ E+ G
Sbjct: 159 YTSSVGSKFPVRWSPPEVLMYS----KFSSKSDIWAFGVLMWEIYSLG 202
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
Query: 43 IELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEI 98
I+ S S D ++ + L HE L G ++ E+ G L + L +
Sbjct: 41 IKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH 100
Query: 99 KLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQN 158
+ L + D+ M YL S LH +L +RNC+++ + V+K++D+ L+ +
Sbjct: 101 RFQTQQLLEMCKDVCEAMEYLES-KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE 159
Query: 159 IPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ + W+ PE+L + S D+++FG+++ E+ G
Sbjct: 160 YTSSVGSKFPVRWSPPEVLMYS----KFSSKSDIWAFGVLMWEIYSLG 203
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + S + LQ ++ LRHE L + + +V E+ +GSL D L +
Sbjct: 37 KTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGE 95
Query: 97 EIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
K RL L D+ GM Y+ + + +H +L + N ++ V K+ D+ L
Sbjct: 96 MGKY---LRLPQLVDMAAQIASGMAYVERMNY-VHRDLRAANILVGENLVCKVADFGLAR 151
Query: 153 FYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ RQ + WTAPE A R + DV+SFGI++ E+ +G
Sbjct: 152 LIEDNEYTARQGAKFPIKWTAPE----AALYGRFTIKSDVWSFGILLTELTTKG 201
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + S + LQ ++ LRHE L + + +V E+ +GSL D L +
Sbjct: 39 KTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGE 97
Query: 97 EIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
K RL L D+ GM Y+ + + +H +L + N ++ V K+ D+ L
Sbjct: 98 MGKY---LRLPQLVDMAAQIASGMAYVERMNY-VHRDLRAANILVGENLVCKVADFGLAR 153
Query: 153 FYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ RQ + WTAPE A R + DV+SFGI++ E+ +G
Sbjct: 154 LIEDNEYTARQGAKFPIKWTAPEA----ALYGRFTIKSDVWSFGILLTELTTKG 203
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + S + LQ ++ LRHE L + + +V E+ +GSL D L +
Sbjct: 48 KTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP-IYIVCEYMSKGSLLDFLKGE 106
Query: 97 EIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
K RL L D+ GM Y+ + + +H +L + N ++ V K+ D+ L
Sbjct: 107 MGKY---LRLPQLVDMAAQIASGMAYVERMNY-VHRDLRAANILVGENLVCKVADFGLAR 162
Query: 153 FYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ RQ + WTAPE A R + DV+SFGI++ E+ +G
Sbjct: 163 LIEDNEYTARQGAKFPIKWTAPE----AALYGRFTIKSDVWSFGILLTELTTKG 212
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + S + LQ ++ LRHE L + + +V E+ +GSL D L +
Sbjct: 48 KTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP-IYIVIEYMSKGSLLDFLKGE 106
Query: 97 EIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
K RL L D+ GM Y+ + + +H +L + N ++ V K+ D+ L
Sbjct: 107 MGKY---LRLPQLVDMAAQIASGMAYVERMNY-VHRDLRAANILVGENLVCKVADFGLAR 162
Query: 153 FYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ RQ + WTAPE A R + DV+SFGI++ E+ +G
Sbjct: 163 LIEDNEYTARQGAKFPIKWTAPE----AALYGRFTIKSDVWSFGILLTELTTKG 212
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + S + LQ ++ LRHE L + + +V E+ +GSL D L +
Sbjct: 48 KTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP-IYIVIEYMSKGSLLDFLKGE 106
Query: 97 EIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
K RL L D+ GM Y+ + + +H +L + N ++ V K+ D+ L
Sbjct: 107 MGKY---LRLPQLVDMAAQIASGMAYVERMNY-VHRDLRAANILVGENLVCKVADFGLAR 162
Query: 153 FYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ RQ + WTAPE A R + DV+SFGI++ E+ +G
Sbjct: 163 LIEDNEXTARQGAKFPIKWTAPE----AALYGRFTIKSDVWSFGILLTELTTKG 212
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + S + LQ ++ LRHE L + + +V E+ +GSL D L +
Sbjct: 48 KTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGE 106
Query: 97 EIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
K RL L D+ GM Y+ + + +H +L + N ++ V K+ D+ L
Sbjct: 107 MGKY---LRLPQLVDMAAQIASGMAYVERMNY-VHRDLRAANILVGENLVCKVADFGLAR 162
Query: 153 FYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ RQ + WTAPE A R + DV+SFGI++ E+ +G
Sbjct: 163 LIEDNEYTARQGAKFPIKWTAPE----AALYGRFTIKSDVWSFGILLTELTTKG 212
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 11/152 (7%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ G + +V E GSL+ L + + + + +L + GM+YL
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS 164
Query: 121 SVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR----ELLWTAPEL 176
+ +H +L +RN +I++ V K++D+ L+ ++ P T R + WT+PE
Sbjct: 165 DM-GAVHRDLAARNILINSNLVCKVSDFGLSRVL--EDDPEAAYTTRGGKIPIRWTSPEA 221
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ A+R + + DV+S+GI++ EV+ G R
Sbjct: 222 I---AYR-KFTSASDVWSYGIVLWEVMSYGER 249
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE-PFCMLS 321
WT+PE + A+R + + DV+S+GI++ EV+ GE P+ +S
Sbjct: 216 WTSPEAI---AYR-KFTSASDVWSYGIVLWEVMSYGERPYWEMS 255
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR----GMRYLHSVPHRLHGNLTSRN 134
+V E+ +GSL D L E + +L L D+ GM Y+ + + +H +L S N
Sbjct: 80 IVTEYMNKGSLLDFLKDGEGR---ALKLPNLVDMAAQVAAGMAYIERMNY-IHRDLRSAN 135
Query: 135 CVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYS 194
++ + KI D+ L + RQ + WTAPE A R + DV+S
Sbjct: 136 ILVGNGLICKIADFGLARLIEDNEXTARQGAKFPIKWTAPE----AALYGRFTIKSDVWS 191
Query: 195 FGIIIQEVVLQG 206
FGI++ E+V +G
Sbjct: 192 FGILLTELVTKG 203
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
WTAPE A R + DV+SFGI++ E+V +G
Sbjct: 172 WTAPE----AALYGRFTIKSDVWSFGILLTELVTKG 203
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + S + LQ ++ LRHE L + + +V E+ +GSL D L +
Sbjct: 45 KTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP-IYIVTEYMNKGSLLDFLKGE 103
Query: 97 EIKLDWTFRLSLLTDL----VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
K RL L D+ GM Y+ + + +H +L + N ++ V K+ D+ L
Sbjct: 104 TGKY---LRLPQLVDMSAQIASGMAYVERMNY-VHRDLRAANILVGENLVCKVADFGLAR 159
Query: 153 FYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ RQ + WTAPE A R + DV+SFGI++ E+ +G
Sbjct: 160 LIEDNEYTARQGAKFPIKWTAPEA----ALYGRFTIKSDVWSFGILLTELTTKG 209
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 10/171 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + SV L+ ++ L+H+ L + ++ EF +GSL D L D
Sbjct: 42 KTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSD 101
Query: 97 EI-KLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
E K+ + + GM Y+ + +H +L + N ++ + KI D+ L +
Sbjct: 102 EGGKVLLPKLIDFSAQIAEGMAYIER-KNYIHRDLRAANVLVSESLMCKIADFGLARVIE 160
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
R+ + WTAPE + ++ +V+SFGI++ E+V G
Sbjct: 161 DNEYTAREGAKFPIKWTAPEAINFGCFTIK----SNVWSFGILLYEIVTYG 207
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE 315
WTAPE + ++ +V+SFGI++ E+V G+
Sbjct: 176 WTAPEAINFGCFTIKS----NVWSFGILLYEIVTYGK 208
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVID 138
+V EF G+L+ L + + + + +L + GMRYL + + +H +L +RN +++
Sbjct: 121 IVIEFMENGALDAFLRKHDGQFTVIQLVGMLRGIAAGMRYLADMGY-VHRDLAARNILVN 179
Query: 139 ARWVLKITDYALNSFY--DAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+ V K++D+ L+ D + + + WTAPE ++ +R + + DV+S+G
Sbjct: 180 SNLVCKVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQ---YR-KFTSASDVWSYG 235
Query: 197 IIIQEVVLQGLR 208
I++ EV+ G R
Sbjct: 236 IVMWEVMSYGER 247
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE 315
WTAPE ++ +R + + DV+S+GI++ EV+ GE
Sbjct: 214 WTAPEAIQ---YR-KFTSASDVWSYGIVMWEVMSYGE 246
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 21/167 (12%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLV---------------QDEIKL 100
L L+HE++ F G D +V+E+ G L L Q + +L
Sbjct: 71 LTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGEL 130
Query: 101 DWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNI 159
+ L + + + GM YL S H +H +L +RNC++ A ++KI D+ ++ Y
Sbjct: 131 GLSQMLHIASQIASGMVYLAS-QHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYY 189
Query: 160 PPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
T + W PE + + + DV+SFG+I+ E+ G
Sbjct: 190 RVGGHTMLPIRWMPPESIMYR----KFTTESDVWSFGVILWEIFTYG 232
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 78/152 (51%), Gaps = 11/152 (7%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ G + ++ E+ GSL+ L +++ + + +L + GM+YL
Sbjct: 89 HPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLS 148
Query: 121 SVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR----ELLWTAPEL 176
+ +H +L +RN ++++ V K++D+ ++ ++ P T R + WTAPE
Sbjct: 149 DMSA-VHRDLAARNILVNSNLVCKVSDFGMSRVL--EDDPEAAYTTRGGKIPIRWTAPEA 205
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ A+R + + DV+S+GI++ EV+ G R
Sbjct: 206 I---AYR-KFTSASDVWSYGIVMWEVMSYGER 233
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE 315
WTAPE + A+R + + DV+S+GI++ EV+ GE
Sbjct: 200 WTAPEAI---AYR-KFTSASDVWSYGIVMWEVMSYGE 232
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
Query: 43 IELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEI 98
I+ S S D ++ + L HE L G ++ E+ G L + L +
Sbjct: 56 IKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH 115
Query: 99 KLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQN 158
+ L + D+ M YL S LH +L +RNC+++ + V+K++D+ L+ +
Sbjct: 116 RFQTQQLLEMCKDVCEAMEYLES-KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE 174
Query: 159 IPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ + W+ PE+L + S D+++FG+++ E+ G
Sbjct: 175 ETSSVGSKFPVRWSPPEVLMYS----KFSSKSDIWAFGVLMWEIYSLG 218
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 19/166 (11%)
Query: 60 RHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEI---KLDWTFRLSLLTDLVRGM 116
RH +L IGF + L++++ G+L+ L ++ + W RL + RG+
Sbjct: 93 RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGL 152
Query: 117 RYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN---SFYDAQNIPPRQKTARELLWTA 173
YLH+ +H ++ S N ++D +V KITD+ ++ + D ++ K L +
Sbjct: 153 HYLHTRA-IIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKGT--LGYID 209
Query: 174 PELLRDEAHRLRGSQPGDVYSFGIIIQEV------VLQGLRHENLN 213
PE + R ++ DVYSFG+++ EV ++Q L E +N
Sbjct: 210 PEYFI----KGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVN 251
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 208 RHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEI---KLDWTFRLSLLTDLVRGM 264
RH +L IGF + L++++ G+L+ L ++ + W RL + RG+
Sbjct: 93 RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGL 152
Query: 265 RYLHS--VPHR 273
YLH+ + HR
Sbjct: 153 HYLHTRAIIHR 163
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 12/109 (11%)
Query: 103 TFR--LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIP 160
TF+ +S L RGM YL S +H +LT+RN ++ V+KI D+ L D NI
Sbjct: 142 TFKDLVSCTYQLARGMEYLAS-QKCIHRDLTARNVLVTENNVMKIADFGLAR--DINNID 198
Query: 161 PRQKTARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+KT L W APE L D + + DV+SFG+++ E+ G
Sbjct: 199 YYKKTTNGRLPVKWMAPEALFDRVY----THQSDVWSFGVLMWEIFTLG 243
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + S + LQ ++ +RHE L + + +V E+ +GSL D L +
Sbjct: 48 KTLKPGTMSPEAFLQEAQVMKKIRHEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGE 106
Query: 97 EIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
K RL L D+ GM Y+ + + +H +L + N ++ V K+ D+ L
Sbjct: 107 MGKY---LRLPQLVDMAAQIASGMAYVERMNY-VHRDLRAANILVGENLVCKVADFGLAR 162
Query: 153 FYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ RQ + WTAPE A R + DV+SFGI++ E+ +G
Sbjct: 163 LIEDNEYTARQGAKFPIKWTAPEA----ALYGRFTIKSDVWSFGILLTELTTKG 212
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 79 LVWEFCCRGSLEDVL-VQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVI 137
++ E+ GSL D L IKL L + + GM ++ + +H NL + N ++
Sbjct: 80 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNY-IHRNLRAANILV 138
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGI 197
KI D+ L + R+ + WTAPE + ++ DV+SFGI
Sbjct: 139 SDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIK----SDVWSFGI 194
Query: 198 IIQEVVLQG 206
++ E+V G
Sbjct: 195 LLTEIVTHG 203
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
WTAPE + ++ DV+SFGI++ E+V G
Sbjct: 172 WTAPEAINYGTFTIKS----DVWSFGILLTEIVTHG 203
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLV---QDEIKLDWTFRLSLLTDLVRGMR 117
H NL GF PT LV+ + GS+ L + + LDW R + RG+
Sbjct: 86 HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLA 145
Query: 118 YLHS--VPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPE 175
YLH P +H ++ + N ++D + + D+ L D ++ + APE
Sbjct: 146 YLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGXIGHIAPE 205
Query: 176 LLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
L + S+ DV+ +G+++ E++
Sbjct: 206 YLSTG----KSSEKTDVFGYGVMLLELI 229
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 209 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLV---QDEIKLDWTFRLSLLTDLVRGMR 265
H NL GF PT LV+ + GS+ L + + LDW R + RG+
Sbjct: 86 HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLA 145
Query: 266 YLHS--VPHRLHELLWTAPELLRDEAHRLRG 294
YLH P +H + A LL +E + G
Sbjct: 146 YLHDHCDPKIIHRDVKAANILLDEEFEAVVG 176
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLV---QDEIKLDWTFRLSLLTDLVRGMR 117
H NL GF PT LV+ + GS+ L + + LDW R + RG+
Sbjct: 94 HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLA 153
Query: 118 YLHS--VPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPE 175
YLH P +H ++ + N ++D + + D+ L D ++ + APE
Sbjct: 154 YLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGTIGHIAPE 213
Query: 176 LLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
L + S+ DV+ +G+++ E++
Sbjct: 214 YLSTG----KSSEKTDVFGYGVMLLELI 237
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 209 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLV---QDEIKLDWTFRLSLLTDLVRGMR 265
H NL GF PT LV+ + GS+ L + + LDW R + RG+
Sbjct: 94 HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLA 153
Query: 266 YLHS--VPHRLHELLWTAPELLRDEAHRLRG 294
YLH P +H + A LL +E + G
Sbjct: 154 YLHDHCDPKIIHRDVKAANILLDEEFEAVVG 184
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 10/171 (5%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + SV L+ ++ L+H+ L + ++ E+ +GSL D L D
Sbjct: 43 KTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTREEPIYIITEYMAKGSLLDFLKSD 102
Query: 97 EI-KLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
E K+ + + GM Y+ + +H +L + N ++ + KI D+ L +
Sbjct: 103 EGGKVLLPKLIDFSAQIAEGMAYIER-KNYIHRDLRAANVLVSESLMCKIADFGLARVIE 161
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
R+ + WTAPE + ++ DV+SFGI++ E+V G
Sbjct: 162 DNEYTAREGAKFPIKWTAPEAINFGCFTIK----SDVWSFGILLYEIVTYG 208
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGE 315
WTAPE + ++ DV+SFGI++ E+V G+
Sbjct: 177 WTAPEAINFGCFTIKS----DVWSFGILLYEIVTYGK 209
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 15/164 (9%)
Query: 60 RHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEI---KLDWTFRLSLLTDLVRGM 116
RH +L IGF + L++++ G+L+ L ++ + W RL + RG+
Sbjct: 93 RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGL 152
Query: 117 RYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELL-WTAPE 175
YLH+ +H ++ S N ++D +V KITD+ ++ + L + PE
Sbjct: 153 HYLHTRA-IIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTLGYIDPE 211
Query: 176 LLRDEAHRLRGSQPGDVYSFGIIIQEV------VLQGLRHENLN 213
+ R ++ DVYSFG+++ EV ++Q L E +N
Sbjct: 212 YFI----KGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVN 251
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 208 RHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEI---KLDWTFRLSLLTDLVRGM 264
RH +L IGF + L++++ G+L+ L ++ + W RL + RG+
Sbjct: 93 RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGL 152
Query: 265 RYLHS--VPHR 273
YLH+ + HR
Sbjct: 153 HYLHTRAIIHR 163
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 90/208 (43%), Gaps = 24/208 (11%)
Query: 25 RYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWEFC 84
+ G +V +K VP+ + E+ + + +Q ++ + G + T +V E+C
Sbjct: 51 KETGQIVAIKQVPVESDLQEI----IKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYC 106
Query: 85 CRGSLEDV-------LVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVI 137
GS+ D+ L +DEI ++L ++G+ YLH + ++H ++ + N ++
Sbjct: 107 GAGSVSDIIRLRNKTLTEDEIA-------TILQSTLKGLEYLHFM-RKIHRDIKAGNILL 158
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGI 197
+ K+ D+ + + R W APE++++ + D++S GI
Sbjct: 159 NTEGHAKLADFGVAGQL-TDXMAKRNXVIGTPFWMAPEVIQEIGYNCV----ADIWSLGI 213
Query: 198 IIQEVVLQGLRHENLNPFIGFLWDPTGP 225
E+ + +++P PT P
Sbjct: 214 TAIEMAEGKPPYADIHPMRAIFMIPTNP 241
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 16/101 (15%)
Query: 198 IIQEV-VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDV-------LVQDEIKLD 249
II+E+ ++Q ++ + G + T +V E+C GS+ D+ L +DEI
Sbjct: 71 IIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIA-- 128
Query: 250 WTFRLSLLTDLVRGMRYLHSVPHRLHELLWTAPELLRDEAH 290
++L ++G+ YLH + ++H + LL E H
Sbjct: 129 -----TILQSTLKGLEYLHFM-RKIHRDIKAGNILLNTEGH 163
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + S + LQ ++ LRHE L + + +V E+ +GSL D L +
Sbjct: 45 KTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP-IYIVTEYMNKGSLLDFLKGE 103
Query: 97 EIKLDWTFRLSLLTDL----VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
K RL L D+ GM Y+ + + +H +L + N ++ V K+ D+ L
Sbjct: 104 TGKY---LRLPQLVDMSAQIASGMAYVERMNY-VHRDLRAANILVGENLVCKVADFGLAR 159
Query: 153 FYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ RQ + WTAPE A R + DV+SFGI++ E+ +G
Sbjct: 160 LIEDNEWTARQGAKFPIKWTAPEA----ALYGRFTIKSDVWSFGILLTELTTKG 209
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + S + LQ ++ LRHE L + + +V E+ +G L D L +
Sbjct: 48 KTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP-IYIVMEYMSKGCLLDFLKGE 106
Query: 97 EIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
K RL L D+ GM Y+ + + +H +L + N ++ V K+ D+ L
Sbjct: 107 MGKY---LRLPQLVDMAAQIASGMAYVERMNY-VHRDLRAANILVGENLVCKVADFGLAR 162
Query: 153 FYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ RQ + WTAPE A R + DV+SFGI++ E+ +G
Sbjct: 163 LIEDNEYTARQGAKFPIKWTAPE----AALYGRFTIKSDVWSFGILLTELTTKG 212
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTG-PALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 114
++ H N+ +G G P +V + G L + + + + + +
Sbjct: 83 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 142
Query: 115 GMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTAREL--LW 171
GM++L S +H +L +RNC++D ++ +K+ D+ L YD + KT +L W
Sbjct: 143 GMKFLAS-KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKW 201
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
A E L+ + + + DV+SFG+++ E++ +G
Sbjct: 202 MALESLQTQ----KFTTKSDVWSFGVLLWELMTRG 232
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEP 316
W A E L+ + + + DV+SFG+++ E++ RG P
Sbjct: 201 WMALESLQTQ----KFTTKSDVWSFGVLLWELMTRGAP 234
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTG-PALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 114
++ H N+ +G G P +V + G L + + + + + +
Sbjct: 90 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 149
Query: 115 GMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTAREL--LW 171
GM++L S +H +L +RNC++D ++ +K+ D+ L YD + KT +L W
Sbjct: 150 GMKFLAS-KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKW 208
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
A E L+ + + + DV+SFG+++ E++ +G
Sbjct: 209 MALESLQTQ----KFTTKSDVWSFGVLLWELMTRG 239
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTG-PALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 114
++ H N+ +G G P +V + G L + + + + + +
Sbjct: 85 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 144
Query: 115 GMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTAREL--LW 171
GM++L S +H +L +RNC++D ++ +K+ D+ L YD + KT +L W
Sbjct: 145 GMKFLAS-KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKW 203
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
A E L+ + + + DV+SFG+++ E++ +G
Sbjct: 204 MALESLQTQ----KFTTKSDVWSFGVLLWELMTRG 234
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTG-PALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 114
++ H N+ +G G P +V + G L + + + + + +
Sbjct: 86 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 145
Query: 115 GMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTAREL--LW 171
GM++L S +H +L +RNC++D ++ +K+ D+ L YD + KT +L W
Sbjct: 146 GMKFLAS-KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKW 204
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
A E L+ + + + DV+SFG+++ E++ +G
Sbjct: 205 MALESLQTQ----KFTTKSDVWSFGVLLWELMTRG 235
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTG-PALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 114
++ H N+ +G G P +V + G L + + + + + +
Sbjct: 85 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 144
Query: 115 GMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTAREL--LW 171
GM++L S +H +L +RNC++D ++ +K+ D+ L YD + KT +L W
Sbjct: 145 GMKFLAS-KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKW 203
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
A E L+ + + + DV+SFG+++ E++ +G
Sbjct: 204 MALESLQTQ----KFTTKSDVWSFGVLLWELMTRG 234
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 103 TFR--LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIP 160
TF+ +S L RGM YL S +H +L +RN ++ V+KI D+ L D NI
Sbjct: 155 TFKDLVSCTYQLARGMEYLAS-QKCIHRDLAARNVLVTENNVMKIADFGLAR--DINNID 211
Query: 161 PRQKTARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+KT L W APE L D + + DV+SFG+++ E+ G
Sbjct: 212 XXKKTTNGRLPVKWMAPEALFDRVY----THQSDVWSFGVLMWEIFTLG 256
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTG-PALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 114
++ H N+ +G G P +V + G L + + + + + +
Sbjct: 144 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 203
Query: 115 GMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTAREL--LW 171
GM++L S +H +L +RNC++D ++ +K+ D+ L YD + KT +L W
Sbjct: 204 GMKFLAS-KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKW 262
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
A E L+ + + + DV+SFG+++ E++ +G
Sbjct: 263 MALESLQTQ----KFTTKSDVWSFGVLLWELMTRG 293
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf
Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp
Analog And Substrate Peptide
Length = 334
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 103 TFR--LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIP 160
TF+ +S L RGM YL S +H +L +RN ++ V+KI D+ L D NI
Sbjct: 155 TFKDLVSCTYQLARGMEYLAS-QKCIHRDLAARNVLVTENNVMKIADFGLAR--DINNID 211
Query: 161 PRQKTARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+KT L W APE L D + + DV+SFG+++ E+ G
Sbjct: 212 XXKKTTNGRLPVKWMAPEALFDRVY----THQSDVWSFGVLMWEIFTLG 256
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
T++ + S + LQ ++ LRHE L + + +V E+ +G L D L +
Sbjct: 48 KTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP-IYIVTEYMSKGCLLDFLKGE 106
Query: 97 EIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
K RL L D+ GM Y+ + + +H +L + N ++ V K+ D+ L
Sbjct: 107 MGKY---LRLPQLVDMAAQIASGMAYVERMNY-VHRDLRAANILVGENLVCKVADFGLAR 162
Query: 153 FYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ RQ + WTAPE A R + DV+SFGI++ E+ +G
Sbjct: 163 LIEDNEYTARQGAKFPIKWTAPE----AALYGRFTIKSDVWSFGILLTELTTKG 212
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 26/173 (15%)
Query: 52 HLLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL-------------VQDEI 98
++++ G +H+N+ +G ++ E+ +G+L + L +
Sbjct: 92 EMMKMIG-KHKNIITLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVP 150
Query: 99 KLDWTFR--LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDA 156
+ TF+ +S L RGM YL S +H +L +RN ++ V+KI D+ L D
Sbjct: 151 EEQMTFKDLVSCTYQLARGMEYLAS-QKCIHRDLAARNVLVTENNVMKIADFGLAR--DI 207
Query: 157 QNIPPRQKTARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
NI +KT L W APE L D + + DV+SFG+++ E+ G
Sbjct: 208 NNIDYYKKTTNGRLPVKWMAPEALFDRVY----THQSDVWSFGVLMWEIFTLG 256
>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
pdb|2JKO|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 45 LKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPA-LVWEFCCRGSLEDVLVQDEIKLDWT 103
++ K + L ++ H ++ IG + + P ++ E C G L L + LD
Sbjct: 54 VREKFLQEALTMRQFDHPHIVKLIGVITE--NPVWIIMELCTLGELRSFLQVRKFSLDLA 111
Query: 104 FRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQ 163
+ L + YL S +H ++ +RN ++ A +K+ D+ L+ + +
Sbjct: 112 SLILYAYQLSTALAYLES-KRFVHRDIAARNVLVSATDCVKLGDFGLSRYMEDSTYYKAS 170
Query: 164 KTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIG 217
K + W APE + + R + DV+ FG+ + E+++ G++ PF G
Sbjct: 171 KGKLPIKWMAPESI----NFRRFTSASDVWMFGVCMWEILMHGVK-----PFQG 215
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 26/173 (15%)
Query: 52 HLLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL-------------VQDEI 98
++++ G +H+N+ +G ++ E+ +G+L + L +
Sbjct: 81 EMMKMIG-KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVP 139
Query: 99 KLDWTFR--LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDA 156
+ TF+ +S L RGM YL S +H +L +RN ++ V+KI D+ L D
Sbjct: 140 EEQMTFKDLVSCTYQLARGMEYLAS-QKCIHRDLAARNVLVTENNVMKIADFGLAR--DI 196
Query: 157 QNIPPRQKTARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
NI +KT L W APE L D + + DV+SFG+++ E+ G
Sbjct: 197 NNIDYYKKTTNGRLPVKWMAPEALFDRVY----THQSDVWSFGVLMWEIFTLG 245
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 103 TFR--LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIP 160
TF+ +S L RGM YL S +H +L +RN ++ V+KI D+ L D NI
Sbjct: 147 TFKDLVSCTYQLARGMEYLAS-QKCIHRDLAARNVLVTENNVMKIADFGLAR--DINNID 203
Query: 161 PRQKTARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+KT L W APE L D + + DV+SFG+++ E+ G
Sbjct: 204 YYKKTTNGRLPVKWMAPEALFDRVY----THQSDVWSFGVLMWEIFTLG 248
>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
pdb|2PY3|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 103 TFR--LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIP 160
TF+ +S L RGM YL S +H +L +RN ++ V+KI D+ L D NI
Sbjct: 155 TFKDLVSCTYQLARGMEYLAS-QKCIHRDLAARNVLVTENNVMKIADFGLAR--DINNID 211
Query: 161 PRQKTARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+KT L W APE L D + + DV+SFG+++ E+ G
Sbjct: 212 YYKKTTNGRLPVKWMAPEALFDRVY----THQSDVWSFGVLMWEIFTLG 256
>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
pdb|2Q0B|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 103 TFR--LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIP 160
TF+ +S L RGM YL S +H +L +RN ++ V+KI D+ L D NI
Sbjct: 155 TFKDLVSCTYQLARGMEYLAS-QKCIHRDLAARNVLVTENNVMKIADFGLAR--DINNID 211
Query: 161 PRQKTARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+KT L W APE L D + + DV+SFG+++ E+ G
Sbjct: 212 YYKKTTNGRLPVKWMAPEALFDRVY----THQSDVWSFGVLMWEIFTLG 256
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 103 TFR--LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIP 160
TF+ +S L RGM YL S +H +L +RN ++ V+KI D+ L D NI
Sbjct: 155 TFKDLVSCTYQLARGMEYLAS-QKCIHRDLAARNVLVTENNVMKIADFGLAR--DINNID 211
Query: 161 PRQKTARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+KT L W APE L D + + DV+SFG+++ E+ G
Sbjct: 212 YYKKTTNGRLPVKWMAPEALFDRVY----THQSDVWSFGVLMWEIFTLG 256
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 103 TFR--LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIP 160
TF+ +S L RGM YL S +H +L +RN ++ V+KI D+ L D NI
Sbjct: 155 TFKDLVSCTYQLARGMEYLAS-QKCIHRDLAARNVLVTENNVMKIADFGLAR--DINNID 211
Query: 161 PRQKTARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+KT L W APE L D + + DV+SFG+++ E+ G
Sbjct: 212 YYKKTTNGRLPVKWMAPEALFDRVY----THQSDVWSFGVLMWEIFTLG 256
>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The
Insulin Receptor Tyrosine Kinase
Length = 306
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNIPPRQK 164
+ + ++ GM YL++ +H NL +RNC++ + +KI D+ + Y+ K
Sbjct: 133 IQMAAEIADGMAYLNAKKF-VHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGK 191
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV------LQGLRHENLNPFI-- 216
+ W APE L+D + D++SFG+++ E+ QGL +E + F+
Sbjct: 192 GLLPVRWMAPESLKDGVF----TTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMD 247
Query: 217 -GFLWDP 222
G+L P
Sbjct: 248 GGYLDQP 254
>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
pdb|3EKN|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
Length = 307
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNIPPRQK 164
+ + ++ GM YL++ +H NL +RNC++ + +KI D+ + Y+ K
Sbjct: 134 IQMAAEIADGMAYLNAKKF-VHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGK 192
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV------LQGLRHENLNPFI-- 216
+ W APE L+D + D++SFG+++ E+ QGL +E + F+
Sbjct: 193 GLLPVRWMAPESLKDGVF----TTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMD 248
Query: 217 -GFLWDP 222
G+L P
Sbjct: 249 GGYLDQP 255
>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains.
pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 45 LKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPA-LVWEFCCRGSLEDVLVQDEIKLDWT 103
++ K + L ++ H ++ IG + + P ++ E C G L L + LD
Sbjct: 434 VREKFLQEALTMRQFDHPHIVKLIGVITE--NPVWIIMELCTLGELRSFLQVRKFSLDLA 491
Query: 104 FRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQ 163
+ L + YL S +H ++ +RN ++ A +K+ D+ L+ + +
Sbjct: 492 SLILYAYQLSTALAYLES-KRFVHRDIAARNVLVSATDCVKLGDFGLSRYMEDSTYYKAS 550
Query: 164 KTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIG 217
K + W APE + + R + DV+ FG+ + E+++ G++ PF G
Sbjct: 551 KGKLPIKWMAPESI----NFRRFTSASDVWMFGVCMWEILMHGVK-----PFQG 595
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 26/173 (15%)
Query: 52 HLLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL-------------VQDEI 98
++++ G +H+N+ +G ++ E+ +G+L + L +
Sbjct: 138 EMMKMIG-KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVP 196
Query: 99 KLDWTFR--LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDA 156
+ TF+ +S L RGM YL S +H +L +RN ++ V+KI D+ L D
Sbjct: 197 EEQMTFKDLVSCTYQLARGMEYLAS-QKCIHRDLAARNVLVTENNVMKIADFGLAR--DI 253
Query: 157 QNIPPRQKTARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
NI +KT L W APE L D + + DV+SFG+++ E+ G
Sbjct: 254 NNIDYYKKTTNGRLPVKWMAPEALFDRVY----THQSDVWSFGVLMWEIFTLG 302
>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The
Kinase Domain Of Focal Adhesion Kinase With A
Phosphorylated Activation Loop
Length = 276
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 45 LKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPA-LVWEFCCRGSLEDVLVQDEIKLDWT 103
++ K + L ++ H ++ IG + + P ++ E C G L L + LD
Sbjct: 54 VREKFLQEALTMRQFDHPHIVKLIGVITE--NPVWIIMELCTLGELRSFLQVRKFSLDLA 111
Query: 104 FRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQ 163
+ L + YL S +H ++ +RN ++ + +K+ D+ L+ + +
Sbjct: 112 SLILYAYQLSTALAYLES-KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTXXKAS 170
Query: 164 KTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIG 217
K + W APE + + R + DV+ FG+ + E+++ G++ PF G
Sbjct: 171 KGKLPIKWMAPESI----NFRRFTSASDVWMFGVCMWEILMHGVK-----PFQG 215
>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120
Length = 316
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 36/191 (18%)
Query: 61 HENLNPFIGFLWDPTGPALVW-EFCCRGSLE---------------DVLVQDEIKLDWTF 104
H N+ +G P GP +V EFC G+L + L +D + L+
Sbjct: 92 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKPEDLYKDFLTLEHLI 151
Query: 105 RLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQK 164
S + +GM +L S +H +L +RN ++ + V+KI D+ L R+
Sbjct: 152 XYSF--QVAKGMEFLASR-KXIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKG 208
Query: 165 TAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFLWDPT 223
AR L W APE + D + ++ DV+SFG+++ E+ G +P+ G D
Sbjct: 209 DARLPLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSLG-----ASPYPGVKIDE- 258
Query: 224 GPALVWEFCCR 234
EFC R
Sbjct: 259 ------EFCRR 263
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 79 LVWEFCCRGSLEDVL-VQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVI 137
++ E+ GSL D L IKL L + + GM ++ + +H +L + N ++
Sbjct: 94 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNY-IHRDLRAANILV 152
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGI 197
KI D+ L + R+ + WTAPE + ++ DV+SFGI
Sbjct: 153 SDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIK----SDVWSFGI 208
Query: 198 IIQEVVLQG 206
++ E+V G
Sbjct: 209 LLTEIVTHG 217
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
WTAPE + ++ DV+SFGI++ E+V G
Sbjct: 186 WTAPEAINYGTFTIKS----DVWSFGILLTEIVTHG 217
>pdb|1RJB|A Chain A, Crystal Structure Of Flt3
Length = 344
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 35/192 (18%)
Query: 61 HENLNPFIGFLWDPTGPA-LVWEFCCRGSLEDVL-------VQDEIKLDWTFRLSLLTDL 112
HEN+ +G +GP L++E+CC G L + L +DEI+ + RL DL
Sbjct: 108 HENIVNLLG-ACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDL 166
Query: 113 ---------------VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDA 156
+GM +L +H +L +RN ++ V+KI D+ L
Sbjct: 167 NVLTFEDLLCFAYQVAKGMEFLE-FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSD 225
Query: 157 QNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFI 216
N R + W APE L + + ++ DV+S+GI++ E+ G +NP+
Sbjct: 226 SNYVVRGNARLPVKWMAPESLFEGIYTIK----SDVWSYGILLWEIFSLG-----VNPYP 276
Query: 217 GFLWDPTGPALV 228
G D L+
Sbjct: 277 GIPVDANFYKLI 288
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 79 LVWEFCCRGSLEDVL-VQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVI 137
++ E+ GSL D L IKL L + + GM ++ + +H +L + N ++
Sbjct: 90 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNY-IHRDLRAANILV 148
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGI 197
KI D+ L + R+ + WTAPE + ++ DV+SFGI
Sbjct: 149 SDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIK----SDVWSFGI 204
Query: 198 IIQEVVLQG 206
++ E+V G
Sbjct: 205 LLTEIVTHG 213
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
WTAPE + ++ DV+SFGI++ E+V G
Sbjct: 182 WTAPEAINYGTFTIKS----DVWSFGILLTEIVTHG 213
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 79 LVWEFCCRGSLEDVL-VQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVI 137
++ E+ GSL D L IKL L + + GM ++ + +H +L + N ++
Sbjct: 92 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNY-IHRDLRAANILV 150
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGI 197
KI D+ L + R+ + WTAPE + ++ DV+SFGI
Sbjct: 151 SDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIK----SDVWSFGI 206
Query: 198 IIQEVVLQG 206
++ E+V G
Sbjct: 207 LLTEIVTHG 215
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
WTAPE + ++ DV+SFGI++ E+V G
Sbjct: 184 WTAPEAINYGTFTIKS----DVWSFGILLTEIVTHG 215
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 79 LVWEFCCRGSLEDVL-VQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVI 137
++ E+ GSL D L IKL L + + GM ++ + +H +L + N ++
Sbjct: 79 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNY-IHRDLRAANILV 137
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGI 197
KI D+ L + R+ + WTAPE + ++ DV+SFGI
Sbjct: 138 SDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIK----SDVWSFGI 193
Query: 198 IIQEVVLQG 206
++ E+V G
Sbjct: 194 LLTEIVTHG 202
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
WTAPE + ++ DV+SFGI++ E+V G
Sbjct: 171 WTAPEAINYGTFTIKS----DVWSFGILLTEIVTHG 202
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 79 LVWEFCCRGSLEDVL-VQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVI 137
++ E+ GSL D L IKL L + + GM ++ + +H +L + N ++
Sbjct: 84 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNY-IHRDLRAANILV 142
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGI 197
KI D+ L + R+ + WTAPE + ++ DV+SFGI
Sbjct: 143 SDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIK----SDVWSFGI 198
Query: 198 IIQEVVLQG 206
++ E+V G
Sbjct: 199 LLTEIVTHG 207
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
WTAPE + ++ DV+SFGI++ E+V G
Sbjct: 176 WTAPEAINYGTFTIKS----DVWSFGILLTEIVTHG 207
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 79 LVWEFCCRGSLEDVL-VQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVI 137
++ E+ GSL D L IKL L + + GM ++ + +H +L + N ++
Sbjct: 93 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNY-IHRDLRAANILV 151
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGI 197
KI D+ L + R+ + WTAPE + ++ DV+SFGI
Sbjct: 152 SDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIK----SDVWSFGI 207
Query: 198 IIQEVVLQG 206
++ E+V G
Sbjct: 208 LLTEIVTHG 216
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
WTAPE + ++ DV+SFGI++ E+V G
Sbjct: 185 WTAPEAINYGTFTIKS----DVWSFGILLTEIVTHG 216
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 62 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 120
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-RQKTARELLWTAPELL 177
LH + H ++ N ++D R LKI+D+ L + + N K L + APELL
Sbjct: 121 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 179
Query: 178 -RDEAHRLRGSQPGDVYSFGIII 199
R E H ++P DV+S GI++
Sbjct: 180 KRREFH----AEPVDVWSCGIVL 198
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 62 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 120
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-RQKTARELLWTAPELL 177
LH + H ++ N ++D R LKI+D+ L + + N K L + APELL
Sbjct: 121 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 179
Query: 178 -RDEAHRLRGSQPGDVYSFGIII 199
R E H ++P DV+S GI++
Sbjct: 180 KRREFH----AEPVDVWSCGIVL 198
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 62 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 120
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-RQKTARELLWTAPELL 177
LH + H ++ N ++D R LKI+D+ L + + N K L + APELL
Sbjct: 121 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 179
Query: 178 -RDEAHRLRGSQPGDVYSFGIII 199
R E H ++P DV+S GI++
Sbjct: 180 KRREFH----AEPVDVWSCGIVL 198
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 79 LVWEFCCRGSLEDVL-VQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVI 137
++ E+ GSL D L IKL L + + GM ++ + +H +L + N ++
Sbjct: 84 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNY-IHRDLRAANILV 142
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGI 197
KI D+ L + R+ + WTAPE + ++ DV+SFGI
Sbjct: 143 SDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIK----SDVWSFGI 198
Query: 198 IIQEVVLQG 206
++ E+V G
Sbjct: 199 LLTEIVTHG 207
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
WTAPE + ++ DV+SFGI++ E+V G
Sbjct: 176 WTAPEAINYGTFTIKS----DVWSFGILLTEIVTHG 207
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 79 LVWEFCCRGSLEDVL-VQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVI 137
++ E+ GSL D L IKL L + + GM ++ + +H +L + N ++
Sbjct: 90 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNY-IHRDLRAANILV 148
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGI 197
KI D+ L + R+ + WTAPE + ++ DV+SFGI
Sbjct: 149 SDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIK----SDVWSFGI 204
Query: 198 IIQEVVLQG 206
++ E+V G
Sbjct: 205 LLTEIVTHG 213
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
WTAPE + ++ DV+SFGI++ E+V G
Sbjct: 182 WTAPEAINYGTFTIKS----DVWSFGILLTEIVTHG 213
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 79 LVWEFCCRGSLEDVL-VQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVI 137
++ E+ GSL D L IKL L + + GM ++ + +H +L + N ++
Sbjct: 86 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNY-IHRDLRAANILV 144
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGI 197
KI D+ L + R+ + WTAPE + ++ DV+SFGI
Sbjct: 145 SDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIK----SDVWSFGI 200
Query: 198 IIQEVVLQG 206
++ E+V G
Sbjct: 201 LLTEIVTHG 209
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
WTAPE + ++ DV+SFGI++ E+V G
Sbjct: 178 WTAPEAINYGTFTIKS----DVWSFGILLTEIVTHG 209
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 79 LVWEFCCRGSLEDVL-VQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVI 137
++ E+ GSL D L IKL L + + GM ++ + +H +L + N ++
Sbjct: 89 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNY-IHRDLRAANILV 147
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGI 197
KI D+ L + R+ + WTAPE + ++ DV+SFGI
Sbjct: 148 SDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIK----SDVWSFGI 203
Query: 198 IIQEVVLQG 206
++ E+V G
Sbjct: 204 LLTEIVTHG 212
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
WTAPE + ++ DV+SFGI++ E+V G
Sbjct: 181 WTAPEAINYGTFTIKS----DVWSFGILLTEIVTHG 212
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 62 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 120
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQ----KTARELLWTAP 174
LH + H ++ N ++D R LKI+D+ L + + N R+ K L + AP
Sbjct: 121 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNN---RERLLNKMCGTLPYVAP 176
Query: 175 ELL-RDEAHRLRGSQPGDVYSFGIIIQEVV 203
ELL R E H ++P DV+S GI++ ++
Sbjct: 177 ELLKRREFH----AEPVDVWSCGIVLTAML 202
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 79 LVWEFCCRGSLEDVL-VQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVI 137
++ E+ GSL D L IKL L + + GM ++ + +H +L + N ++
Sbjct: 85 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNY-IHRDLRAANILV 143
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGI 197
KI D+ L + R+ + WTAPE + ++ DV+SFGI
Sbjct: 144 SDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIK----SDVWSFGI 199
Query: 198 IIQEVVLQG 206
++ E+V G
Sbjct: 200 LLTEIVTHG 208
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
WTAPE + ++ DV+SFGI++ E+V G
Sbjct: 177 WTAPEAINYGTFTIKS----DVWSFGILLTEIVTHG 208
>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 26/163 (15%)
Query: 61 HENLNPFIGFLWDPTGPALVW-EFCCRGSLEDVL-------------VQDEIKLDWTFRL 106
H N+ +G P GP +V EFC G+L L +D + L+
Sbjct: 90 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKDLYKDFLTLEHLIXY 149
Query: 107 SLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL--NSFYDAQNIPPRQK 164
S + +GM +L S +H +L +RN ++ + V+KI D+ L + + D + R+
Sbjct: 150 SF--QVAKGMEFLASR-KXIHRDLAARNILLSEKNVVKIXDFGLARDIYKDPDYV--RKG 204
Query: 165 TAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
AR L W APE + D + ++ DV+SFG+++ E+ G
Sbjct: 205 DARLPLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSLG 243
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 254 LSLLTDLVRGMRYLHSVPHRLHELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVR 313
L D+ + Y+ RL L W APE + D + ++ DV+SFG+++ E+
Sbjct: 188 FGLARDIYKDPDYVRKGDARL-PLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSL 242
Query: 314 G 314
G
Sbjct: 243 G 243
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 61 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 119
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQ----KTARELLWTAP 174
LH + H ++ N ++D R LKI+D+ L + + N R+ K L + AP
Sbjct: 120 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNN---RERLLNKMCGTLPYVAP 175
Query: 175 ELL-RDEAHRLRGSQPGDVYSFGIIIQEVV 203
ELL R E H ++P DV+S GI++ ++
Sbjct: 176 ELLKRREFH----AEPVDVWSCGIVLTAML 201
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 61 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 119
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-RQKTARELLWTAPELL 177
LH + H ++ N ++D R LKI+D+ L + + N K L + APELL
Sbjct: 120 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 178
Query: 178 -RDEAHRLRGSQPGDVYSFGIII 199
R E H ++P DV+S GI++
Sbjct: 179 KRREFH----AEPVDVWSCGIVL 197
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 79 LVWEFCCRGSLEDVL-VQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVI 137
++ E+ GSL D L IKL L + + GM ++ + +H +L + N ++
Sbjct: 84 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNY-IHRDLRAANILV 142
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGI 197
KI D+ L + R+ + WTAPE + ++ DV+SFGI
Sbjct: 143 SDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIK----SDVWSFGI 198
Query: 198 IIQEVVLQG 206
++ E+V G
Sbjct: 199 LLTEIVTHG 207
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
WTAPE + ++ DV+SFGI++ E+V G
Sbjct: 176 WTAPEAINYGTFTIKS----DVWSFGILLTEIVTHG 207
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 79 LVWEFCCRGSLEDVL-VQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVI 137
++ E+ GSL D L IKL L + + GM ++ + +H +L + N ++
Sbjct: 84 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNY-IHRDLRAANILV 142
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGI 197
KI D+ L + R+ + WTAPE + ++ DV+SFGI
Sbjct: 143 SDTLSCKIADFGLARLIEDAEXTAREGAKFPIKWTAPEAINYGTFTIK----SDVWSFGI 198
Query: 198 IIQEVVLQG 206
++ E+V G
Sbjct: 199 LLTEIVTHG 207
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
WTAPE + ++ DV+SFGI++ E+V G
Sbjct: 176 WTAPEAINYGTFTIKS----DVWSFGILLTEIVTHG 207
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 61 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 119
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-RQKTARELLWTAPELL 177
LH + H ++ N ++D R LKI+D+ L + + N K L + APELL
Sbjct: 120 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 178
Query: 178 -RDEAHRLRGSQPGDVYSFGIII 199
R E H ++P DV+S GI++
Sbjct: 179 KRREFH----AEPVDVWSCGIVL 197
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 62 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 120
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-RQKTARELLWTAPELL 177
LH + H ++ N ++D R LKI+D+ L + + N K L + APELL
Sbjct: 121 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 179
Query: 178 -RDEAHRLRGSQPGDVYSFGIII 199
R E H ++P DV+S GI++
Sbjct: 180 KRREFH----AEPVDVWSCGIVL 198
>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 61 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 119
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-RQKTARELLWTAPELL 177
LH + H ++ N ++D R LKI+D+ L + + N K L + APELL
Sbjct: 120 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 178
Query: 178 -RDEAHRLRGSQPGDVYSFGIII 199
R E H ++P DV+S GI++
Sbjct: 179 KRREFH----AEPVDVWSCGIVL 197
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 60 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 118
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-RQKTARELLWTAPELL 177
LH + H ++ N ++D R LKI+D+ L + + N K L + APELL
Sbjct: 119 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 177
Query: 178 -RDEAHRLRGSQPGDVYSFGIII 199
R E H ++P DV+S GI++
Sbjct: 178 KRREFH----AEPVDVWSCGIVL 196
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 61 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 119
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-RQKTARELLWTAPELL 177
LH + H ++ N ++D R LKI+D+ L + + N K L + APELL
Sbjct: 120 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 178
Query: 178 -RDEAHRLRGSQPGDVYSFGIII 199
R E H ++P DV+S GI++
Sbjct: 179 KRREFH----AEPVDVWSCGIVL 197
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 61 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 119
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-RQKTARELLWTAPELL 177
LH + H ++ N ++D R LKI+D+ L + + N K L + APELL
Sbjct: 120 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 178
Query: 178 -RDEAHRLRGSQPGDVYSFGIII 199
R E H ++P DV+S GI++
Sbjct: 179 KRREFH----AEPVDVWSCGIVL 197
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 62 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 120
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-RQKTARELLWTAPELL 177
LH + H ++ N ++D R LKI+D+ L + + N K L + APELL
Sbjct: 121 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 179
Query: 178 -RDEAHRLRGSQPGDVYSFGIII 199
R E H ++P DV+S GI++
Sbjct: 180 KRREFH----AEPVDVWSCGIVL 198
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 61 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 119
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-RQKTARELLWTAPELL 177
LH + H ++ N ++D R LKI+D+ L + + N K L + APELL
Sbjct: 120 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAPELL 178
Query: 178 -RDEAHRLRGSQPGDVYSFGIII 199
R E H ++P DV+S GI++
Sbjct: 179 KRREFH----AEPVDVWSCGIVL 197
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 61 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 119
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-RQKTARELLWTAPELL 177
LH + H ++ N ++D R LKI+D+ L + + N K L + APELL
Sbjct: 120 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAPELL 178
Query: 178 -RDEAHRLRGSQPGDVYSFGIII 199
R E H ++P DV+S GI++
Sbjct: 179 KRREFH----AEPVDVWSCGIVL 197
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 62 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 120
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-RQKTARELLWTAPELL 177
LH + H ++ N ++D R LKI+D+ L + + N K L + APELL
Sbjct: 121 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAPELL 179
Query: 178 -RDEAHRLRGSQPGDVYSFGIII 199
R E H ++P DV+S GI++
Sbjct: 180 KRREFH----AEPVDVWSCGIVL 198
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 61 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 119
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-RQKTARELLWTAPELL 177
LH + H ++ N ++D R LKI+D+ L + + N K L + APELL
Sbjct: 120 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAPELL 178
Query: 178 -RDEAHRLRGSQPGDVYSFGIII 199
R E H ++P DV+S GI++
Sbjct: 179 KRREFH----AEPVDVWSCGIVL 197
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 61 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 119
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-RQKTARELLWTAPELL 177
LH + H ++ N ++D R LKI+D+ L + + N K L + APELL
Sbjct: 120 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 178
Query: 178 -RDEAHRLRGSQPGDVYSFGIII 199
R E H ++P DV+S GI++
Sbjct: 179 KRREFH----AEPVDVWSCGIVL 197
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 61 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 119
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-RQKTARELLWTAPELL 177
LH + H ++ N ++D R LKI+D+ L + + N K L + APELL
Sbjct: 120 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAPELL 178
Query: 178 -RDEAHRLRGSQPGDVYSFGIII 199
R E H ++P DV+S GI++
Sbjct: 179 KRREFH----AEPVDVWSCGIVL 197
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 61 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 119
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-RQKTARELLWTAPELL 177
LH + H ++ N ++D R LKI+D+ L + + N K L + APELL
Sbjct: 120 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 178
Query: 178 -RDEAHRLRGSQPGDVYSFGIII 199
R E H ++P DV+S GI++
Sbjct: 179 KRREFH----AEPVDVWSCGIVL 197
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 22/171 (12%)
Query: 60 RHENLNPFIGFLWDPTGPALV-WEFCCRGSL---------EDVLVQDEIKLDWTFRLSLL 109
+HEN+ +G GP LV E+CC G L D+ +D L+ L
Sbjct: 100 QHENIVNLLGAC-THGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELRDLLHFS 158
Query: 110 TDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTARE 168
+ + +GM +L S + +H ++ +RN ++ V KI D+ L + N +
Sbjct: 159 SQVAQGMAFLAS-KNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLP 217
Query: 169 LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFL 219
+ W APE + D + ++ DV+S+GI++ E+ G LNP+ G L
Sbjct: 218 VKWMAPESIFDCVYTVQS----DVWSYGILLWEIFSLG-----LNPYPGIL 259
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L HEN+ F G + L E+C G L D ++ +I + L+ G+ Y
Sbjct: 62 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIGMPEPDAQRFFHQLMAGVVY 120
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPP-RQKTARELLWTAPELL 177
LH + H ++ N ++D R LKI+D+ L + + N K L + APELL
Sbjct: 121 LHGI-GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 179
Query: 178 -RDEAHRLRGSQPGDVYSFGIII 199
R E H ++P DV+S GI++
Sbjct: 180 KRREFH----AEPVDVWSCGIVL 198
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 22/171 (12%)
Query: 60 RHENLNPFIGFLWDPTGPALV-WEFCCRGSL---------EDVLVQDEIKLDWTFRLSLL 109
+HEN+ +G GP LV E+CC G L D+ +D L+ L
Sbjct: 108 QHENIVNLLGAC-THGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELRDLLHFS 166
Query: 110 TDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTARE 168
+ + +GM +L S + +H ++ +RN ++ V KI D+ L + N +
Sbjct: 167 SQVAQGMAFLAS-KNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLP 225
Query: 169 LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFL 219
+ W APE + D + ++ DV+S+GI++ E+ G LNP+ G L
Sbjct: 226 VKWMAPESIFDCVYTVQS----DVWSYGILLWEIFSLG-----LNPYPGIL 267
>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2-
Yl]amino}phenyl)acetic Acid
Length = 303
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 19/129 (14%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKT 165
+ + ++ GM YL++ +H +L +RNC++ + +KI D+ + D +K
Sbjct: 130 IQMAAEIADGMAYLNAKKF-VHRDLAARNCMVAHDFTVKIGDFGMTR--DIXETDXXRKG 186
Query: 166 ARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV------LQGLRHENLNPFI 216
+ LL W APE L+D + D++SFG+++ E+ QGL +E + F+
Sbjct: 187 GKGLLPVRWMAPESLKDGVF----TTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFV 242
Query: 217 ---GFLWDP 222
G+L P
Sbjct: 243 MDGGYLDQP 251
>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 45 LKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPA-LVWEFCCRGSLEDVLVQDEIKLDWT 103
++ K + L ++ H ++ IG + + P ++ E C G L L + LD
Sbjct: 434 VREKFLQEALTMRQFDHPHIVKLIGVITE--NPVWIIMELCTLGELRSFLQVRKFSLDLA 491
Query: 104 FRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQ 163
+ L + YL S +H ++ +RN ++ + +K+ D+ L+ + +
Sbjct: 492 SLILYAYQLSTALAYLES-KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKAS 550
Query: 164 KTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIG 217
K + W APE + + R + DV+ FG+ + E+++ G++ PF G
Sbjct: 551 KGKLPIKWMAPESI----NFRRFTSASDVWMFGVCMWEILMHGVK-----PFQG 595
>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And
Kinase Domains Of Focal Adhesion Kinase.
pdb|2JKQ|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 45 LKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPA-LVWEFCCRGSLEDVLVQDEIKLDWT 103
++ K + L ++ H ++ IG + + P ++ E C G L L + LD
Sbjct: 54 VREKFLQEALTMRQFDHPHIVKLIGVITE--NPVWIIMELCTLGELRSFLQVRKYSLDLA 111
Query: 104 FRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQ 163
+ L + YL S +H ++ +RN ++ + +K+ D+ L+ + +
Sbjct: 112 SLILYAYQLSTALAYLES-KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKAS 170
Query: 164 KTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIG 217
K + W APE + + R + DV+ FG+ + E+++ G++ PF G
Sbjct: 171 KGKLPIKWMAPESI----NFRRFTSASDVWMFGVCMWEILMHGVK-----PFQG 215
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 19/129 (14%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKT 165
+ + ++ GM YL++ +H +L +RNC++ + +KI D+ + D +K
Sbjct: 133 IQMAAEIADGMAYLNAKKF-VHRDLAARNCMVAHDFTVKIGDFGMTR--DIXETDXXRKG 189
Query: 166 ARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV------LQGLRHENLNPFI 216
+ LL W APE L+D + D++SFG+++ E+ QGL +E + F+
Sbjct: 190 GKGLLPVRWMAPESLKDGVF----TTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFV 245
Query: 217 ---GFLWDP 222
G+L P
Sbjct: 246 MDGGYLDQP 254
>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A
Methanesulfonamide Diaminopyrimidine Inhibitor
Length = 276
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 45 LKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPA-LVWEFCCRGSLEDVLVQDEIKLDWT 103
++ K + L ++ H ++ IG + + P ++ E C G L L + LD
Sbjct: 51 VREKFLQEALTMRQFDHPHIVKLIGVITE--NPVWIIMELCTLGELRSFLQVRKYSLDLA 108
Query: 104 FRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQ 163
+ L + YL S +H ++ +RN ++ + +K+ D+ L+ + +
Sbjct: 109 SLILYAYQLSTALAYLES-KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKAS 167
Query: 164 KTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIG 217
K + W APE + + R + DV+ FG+ + E+++ G++ PF G
Sbjct: 168 KGKLPIKWMAPESI----NFRRFTSASDVWMFGVCMWEILMHGVK-----PFQG 212
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 26/173 (15%)
Query: 52 HLLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL-------------VQDEI 98
++++ G +H+N+ +G ++ E+ +G+L + L +
Sbjct: 92 EMMKMIG-KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVP 150
Query: 99 KLDWTFR--LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDA 156
+ TF+ +S L RGM YL S +H +L +RN ++ V++I D+ L D
Sbjct: 151 EEQMTFKDLVSCTYQLARGMEYLAS-QKCIHRDLAARNVLVTENNVMRIADFGLAR--DI 207
Query: 157 QNIPPRQKTARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
NI +KT L W APE L D + + DV+SFG+++ E+ G
Sbjct: 208 NNIDYYKKTTNGRLPVKWMAPEALFDRVY----THQSDVWSFGVLMWEIFTLG 256
>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak)
pdb|4I4F|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With An Allosteric Binding Pyrazolobenzothiazine
Compound
Length = 281
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 45 LKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPA-LVWEFCCRGSLEDVLVQDEIKLDWT 103
++ K + L ++ H ++ IG + + P ++ E C G L L + LD
Sbjct: 59 VREKFLQEALTMRQFDHPHIVKLIGVITE--NPVWIIMELCTLGELRSFLQVRKYSLDLA 116
Query: 104 FRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQ 163
+ L + YL S +H ++ +RN ++ + +K+ D+ L+ + +
Sbjct: 117 SLILYAYQLSTALAYLES-KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKAS 175
Query: 164 KTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIG 217
K + W APE + + R + DV+ FG+ + E+++ G++ PF G
Sbjct: 176 KGKLPIKWMAPESI----NFRRFTSASDVWMFGVCMWEILMHGVK-----PFQG 220
>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
pdb|4EBV|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
Length = 304
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 45 LKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPA-LVWEFCCRGSLEDVLVQDEIKLDWT 103
++ K + L ++ H ++ IG + + P ++ E C G L L + LD
Sbjct: 82 VREKFLQEALTMRQFDHPHIVKLIGVITE--NPVWIIMELCTLGELRSFLQVRKYSLDLA 139
Query: 104 FRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQ 163
+ L + YL S +H ++ +RN ++ + +K+ D+ L+ + +
Sbjct: 140 SLILYAYQLSTALAYLES-KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKAS 198
Query: 164 KTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIG 217
K + W APE + + R + DV+ FG+ + E+++ G++ PF G
Sbjct: 199 KGKLPIKWMAPESI----NFRRFTSASDVWMFGVCMWEILMHGVK-----PFQG 243
>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2ETM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2IJM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
pdb|2IJM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
Length = 281
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 45 LKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPA-LVWEFCCRGSLEDVLVQDEIKLDWT 103
++ K + L ++ H ++ IG + + P ++ E C G L L + LD
Sbjct: 56 VREKFLQEALTMRQFDHPHIVKLIGVITE--NPVWIIMELCTLGELRSFLQVRKYSLDLA 113
Query: 104 FRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQ 163
+ L + YL S +H ++ +RN ++ + +K+ D+ L+ + +
Sbjct: 114 SLILYAYQLSTALAYLES-KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKAS 172
Query: 164 KTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIG 217
K + W APE + + R + DV+ FG+ + E+++ G++ PF G
Sbjct: 173 KGKLPIKWMAPESI----NFRRFTSASDVWMFGVCMWEILMHGVK-----PFQG 217
>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 45 LKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPA-LVWEFCCRGSLEDVLVQDEIKLDWT 103
++ K + L ++ H ++ IG + + P ++ E C G L L + LD
Sbjct: 54 VREKFLQEALTMRQFDHPHIVKLIGVITE--NPVWIIMELCTLGELRSFLQVRKYSLDLA 111
Query: 104 FRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQ 163
+ L + YL S +H ++ +RN ++ + +K+ D+ L+ + +
Sbjct: 112 SLILYAYQLSTALAYLES-KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKAS 170
Query: 164 KTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIG 217
K + W APE + + R + DV+ FG+ + E+++ G++ PF G
Sbjct: 171 KGKLPIKWMAPESI----NFRRFTSASDVWMFGVCMWEILMHGVK-----PFQG 215
>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|B Chain B, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|2AUH|A Chain A, Crystal Structure Of The Grb14 Bps Region In Complex With
The Insulin Receptor Tyrosine Kinase
pdb|2B4S|B Chain B, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|D Chain D, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|3BU3|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide
pdb|3BU5|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide And Atp
pdb|3BU6|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Phosphopeptide
Length = 306
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 19/129 (14%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKT 165
+ + ++ GM YL++ +H +L +RNC++ + +KI D+ + D +K
Sbjct: 133 IQMAAEIADGMAYLNAKKF-VHRDLAARNCMVAHDFTVKIGDFGMTR--DIXETDXXRKG 189
Query: 166 ARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV------LQGLRHENLNPFI 216
+ LL W APE L+D + D++SFG+++ E+ QGL +E + F+
Sbjct: 190 GKGLLPVRWMAPESLKDGVF----TTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFV 245
Query: 217 ---GFLWDP 222
G+L P
Sbjct: 246 MDGGYLDQP 254
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 4 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 61 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 120
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R T L + APE+L
Sbjct: 121 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVVTLWYRAPEIL 175
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 176 LGXKYY---STAVDIWSLGCIFAEMV 198
>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
pdb|3PXK|B Chain B, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
Length = 282
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 45 LKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPA-LVWEFCCRGSLEDVLVQDEIKLDWT 103
++ K + L ++ H ++ IG + + P ++ E C G L L + LD
Sbjct: 57 VREKFLQEALTMRQFDHPHIVKLIGVITE--NPVWIIMELCTLGELRSFLQVRKYSLDLA 114
Query: 104 FRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQ 163
+ L + YL S +H ++ +RN ++ + +K+ D+ L+ + +
Sbjct: 115 SLILYAYQLSTALAYLES-KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKAS 173
Query: 164 KTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIG 217
K + W APE + + R + DV+ FG+ + E+++ G++ PF G
Sbjct: 174 KGKLPIKWMAPESI----NFRRFTSASDVWMFGVCMWEILMHGVK-----PFQG 218
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 11 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 67
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 68 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 127
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R T L + APE+L
Sbjct: 128 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVVTLWYRAPEIL 182
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 183 LGXKYY---STAVDIWSLGCIFAEMV 205
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 38/191 (19%)
Query: 61 HENLNPFIGFLWDPTGPALVW-EFCCRGSLEDVL-------------VQDEIKLDWTFRL 106
H N+ +G P GP +V EFC G+L L +D + L+
Sbjct: 90 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKDLYKDFLTLEHLICY 149
Query: 107 SLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL--NSFYDAQNIPPRQK 164
S + +GM +L S +H +L +RN ++ + V+KI D+ L + + D + R+
Sbjct: 150 SF--QVAKGMEFLASR-KXIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV--RKG 204
Query: 165 TAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFLWDPT 223
AR L W APE + D + ++ DV+SFG+++ E+ G +P+ G D
Sbjct: 205 DARLPLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSLG-----ASPYPGVKIDE- 254
Query: 224 GPALVWEFCCR 234
EFC R
Sbjct: 255 ------EFCRR 259
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 254 LSLLTDLVRGMRYLHSVPHRLHELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVR 313
L D+ + Y+ RL L W APE + D + ++ DV+SFG+++ E+
Sbjct: 188 FGLARDIYKDPDYVRKGDARL-PLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSL 242
Query: 314 G 314
G
Sbjct: 243 G 243
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 12/188 (6%)
Query: 19 VVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPA 78
VV + G +V +K + L + S ++ + L+ L H N+ I +
Sbjct: 36 VVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLT 95
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHR-LHGNLTSRNCVI 137
LV+EF + L+ VL +++ L + L L+RG+ + H HR LH +L +N +I
Sbjct: 96 LVFEFMEK-DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQ--HRILHRDLKPQNLLI 152
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELLRDEAHRLRGSQPGDVYSF 195
++ LK+ D+ L + IP R T L + AP++L + S D++S
Sbjct: 153 NSDGALKLADFGLARAF---GIPVRSYTHEVVTLWYRAPDVLMGSK---KYSTSVDIWSI 206
Query: 196 GIIIQEVV 203
G I E++
Sbjct: 207 GCIFAEMI 214
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 12/188 (6%)
Query: 19 VVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPA 78
VV + G +V +K + L + S ++ + L+ L H N+ I +
Sbjct: 36 VVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLT 95
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHR-LHGNLTSRNCVI 137
LV+EF + L+ VL +++ L + L L+RG+ + H HR LH +L +N +I
Sbjct: 96 LVFEFMEK-DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQ--HRILHRDLKPQNLLI 152
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELLRDEAHRLRGSQPGDVYSF 195
++ LK+ D+ L + IP R T L + AP++L + S D++S
Sbjct: 153 NSDGALKLADFGLARAF---GIPVRSYTHEVVTLWYRAPDVLMGSK---KYSTSVDIWSI 206
Query: 196 GIIIQEVV 203
G I E++
Sbjct: 207 GCIFAEMI 214
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 19/129 (14%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKT 165
+ + ++ GM YL++ +H +L +RNC++ + +KI D+ + D +K
Sbjct: 133 IQMAAEIADGMAYLNAKKF-VHRDLAARNCMVAHDFTVKIGDFGMTR--DIYETAYYRKG 189
Query: 166 ARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV------LQGLRHENLNPFI 216
+ LL W APE L+D + D++SFG+++ E+ QGL +E + F+
Sbjct: 190 GKGLLPVRWMAPESLKDGVF----TTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFV 245
Query: 217 ---GFLWDP 222
G+L P
Sbjct: 246 MDGGYLDQP 254
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNIPPRQK 164
+ + ++ GM YL++ +H +L +RNC++ + +KI D+ + Y+ K
Sbjct: 133 IQMAAEIADGMAYLNAKKF-VHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGK 191
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV------LQGLRHENLNPFI-- 216
+ W APE L+D + D++SFG+++ E+ QGL +E + F+
Sbjct: 192 GLLPVRWMAPESLKDGVF----TTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMD 247
Query: 217 -GFLWDP 222
G+L P
Sbjct: 248 GGYLDQP 254
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNIPPRQK 164
+ + ++ GM YL++ +H +L +RNC++ + +KI D+ + Y+ K
Sbjct: 132 IQMAAEIADGMAYLNAKKF-VHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGK 190
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV------LQGLRHENLNPFI-- 216
+ W APE L+D + D++SFG+++ E+ QGL +E + F+
Sbjct: 191 GLLPVRWMAPESLKDGVF----TTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMD 246
Query: 217 -GFLWDP 222
G+L P
Sbjct: 247 GGYLDQP 253
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 103 TFR--LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIP 160
TF+ +S L RGM YL S +H +L +RN ++ V+KI D+ L D NI
Sbjct: 155 TFKDLVSCTYQLARGMEYLAS-QKCIHRDLAARNVLVTENNVMKIADFGLAR--DINNID 211
Query: 161 PRQKTARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ T L W APE L D + + DV+SFG+++ E+ G
Sbjct: 212 YYKNTTNGRLPVKWMAPEALFDRVY----THQSDVWSFGVLMWEIFTLG 256
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 4 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 61 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLSFCH 120
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R T L + APE+L
Sbjct: 121 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVVTLWYRAPEIL 175
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 176 LGCKYY---STAVDIWSLGCIFAEMV 198
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 9/155 (5%)
Query: 56 LQGLRHENLNPFIGFLWDPTG-PALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 114
++ H N+ +G G P +V + G L + + + + + +
Sbjct: 86 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 145
Query: 115 GMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTAREL--LW 171
GM++L S +H +L +RNC++D ++ +K+ D+ L D + KT +L W
Sbjct: 146 GMKFLAS-KKFVHRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNKTGAKLPVKW 204
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
A E L+ + + + DV+SFG+++ E++ +G
Sbjct: 205 MALESLQTQ----KFTTKSDVWSFGVLLWELMTRG 235
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 4 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 61 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 120
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R T L + APE+L
Sbjct: 121 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVVTLWYRAPEIL 175
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 176 LGCKYY---STAVDIWSLGCIFAEMV 198
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 3 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 59
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 60 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 119
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R T L + APE+L
Sbjct: 120 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVVTLWYRAPEIL 174
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 175 LGCKYY---STAVDIWSLGCIFAEMV 197
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 79 LVWEFCCRGSLEDVLVQDE-IKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVI 137
++ EF +GSL D L DE K + + GM ++ + +H +L + N ++
Sbjct: 253 IITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNY-IHRDLRAANILV 311
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGI 197
A V KI D+ L R + WTAPE + + ++ DV+SFGI
Sbjct: 312 SASLVCKIADFGL----------ARVGAKFPIKWTAPEAINFGSFTIKS----DVWSFGI 357
Query: 198 IIQEVVLQG 206
++ E+V G
Sbjct: 358 LLMEIVTYG 366
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 37/162 (22%)
Query: 184 LRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFLW-DPTGPALVWEFCCRGSLEDVLV 242
++ +PG + + + V++ L+H+ L + +P ++ EF +GSL D L
Sbjct: 211 VKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPI--YIITEFMAKGSLLDFLK 268
Query: 243 QDEIK-------LDWTFRLSLLTDLVRGMRYLH------------SVPHRLHE------- 276
DE +D++ +++ + Y+H S+ ++ +
Sbjct: 269 SDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVG 328
Query: 277 ----LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRG 314
+ WTAPE + + ++ DV+SFGI++ E+V G
Sbjct: 329 AKFPIKWTAPEAINFGSFTIKS----DVWSFGILLMEIVTYG 366
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 11 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 67
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 68 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 127
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R T L + APE+L
Sbjct: 128 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVVTLWYRAPEIL 182
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 183 LGCKYY---STAVDIWSLGCIFAEMV 205
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 5 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 62 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 121
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R T L + APE+L
Sbjct: 122 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVVTLWYRAPEIL 176
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 177 LGCKYY---STAVDIWSLGCIFAEMV 199
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 4 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 61 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 120
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R T L + APE+L
Sbjct: 121 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVVTLWYRAPEIL 175
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 176 LGCKYY---STAVDIWSLGCIFAEMV 198
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 3 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 59
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 60 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 119
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R T L + APE+L
Sbjct: 120 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVVTLWYRAPEIL 174
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 175 LGCKYY---STAVDIWSLGCIFAEMV 197
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 60 RHENLNPFIGFLWDPTGPALV-WEFCCRGSLEDVLVQDE--IKLDWTFRLSLLTDLVRGM 116
+HEN+ +G GP LV E+CC G L + L + ++ D F ++ T R +
Sbjct: 108 QHENIVNLLGAC-THGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDL 166
Query: 117 RYLHSVPHRLHGNLTSRNCV---IDARWVL-------KITDYAL-NSFYDAQNIPPRQKT 165
+ S + L S+NC+ + AR VL KI D+ L + N +
Sbjct: 167 LHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNA 226
Query: 166 ARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFL 219
+ W APE + D + ++ DV+S+GI++ E+ G LNP+ G L
Sbjct: 227 RLPVKWMAPESIFDCVYTVQS----DVWSYGILLWEIFSLG-----LNPYPGIL 271
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 8 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 64
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 65 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 124
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R T L + APE+L
Sbjct: 125 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVVTLWYRAPEIL 179
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 180 LGCKYY---STAVDIWSLGCIFAEMV 202
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 25/165 (15%)
Query: 60 RHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL-VQDEIKLDWTFR------------- 105
+H+N+ +G ++ E+ +G+L + L ++ L++++
Sbjct: 92 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQAREPPGLEYSYNPSHNPEEQLSSKD 151
Query: 106 -LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQK 164
+S + RGM YL S +H +L +RN ++ V+KI D+ L D +I +K
Sbjct: 152 LVSCAYQVARGMEYLAS-KKCIHRDLAARNVLVTEDNVMKIADFGLAR--DIHHIDYYKK 208
Query: 165 TARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
T L W APE L D + + DV+SFG+++ E+ G
Sbjct: 209 TTNGRLPVKWMAPEALFDRIY----THQSDVWSFGVLLWEIFTLG 249
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 26/175 (14%)
Query: 60 RHENLNPFIGFLWDPTGPALV-WEFCCRGSLEDVLVQDE--IKLDWTFRLS--------- 107
+HEN+ +G GP LV E+CC G L + L + ++ D F ++
Sbjct: 108 QHENIVNLLGAC-THGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTLSTRDL 166
Query: 108 --LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQK 164
+ + +GM +L S + +H ++ +RN ++ V KI D+ L + N +
Sbjct: 167 LHFSSQVAQGMAFLAS-KNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGN 225
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFL 219
+ W APE + D + ++ DV+S+GI++ E+ G LNP+ G L
Sbjct: 226 ARLPVKWMAPESIFDCVYTVQS----DVWSYGILLWEIFSLG-----LNPYPGIL 271
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 25/165 (15%)
Query: 60 RHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL-VQDEIKLDWTFR------------- 105
+H+N+ +G ++ E+ +G+L + L + L+++F
Sbjct: 92 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEFSFNPSHNPEEQLSSKD 151
Query: 106 -LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQK 164
+S + RGM YL S +H +L +RN ++ V+KI D+ L D +I +K
Sbjct: 152 LVSCAYQVARGMEYLAS-KKCIHRDLAARNVLVTEDNVMKIADFGLAR--DIHHIDXXKK 208
Query: 165 TARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
T L W APE L D + + DV+SFG+++ E+ G
Sbjct: 209 TTNGRLPVKWMAPEALFDRIY----THQSDVWSFGVLLWEIFTLG 249
>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea
Inhibitor
Length = 316
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 37/192 (19%)
Query: 61 HENLNPFIGFLWDPTGPALVW-EFCCRGSLE----------------DVLVQDEIKLDWT 103
H N+ +G P GP +V EFC G+L + L +D + L+
Sbjct: 91 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTPEDLYKDFLTLEHL 150
Query: 104 FRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQ 163
S + +GM +L S +H +L +RN ++ + V+KI D+ L R+
Sbjct: 151 ICYSF--QVAKGMEFLASR-KCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRK 207
Query: 164 KTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFLWDP 222
AR L W APE + D + ++ DV+SFG+++ E+ G +P+ G D
Sbjct: 208 GDARLPLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSLG-----ASPYPGVKIDE 258
Query: 223 TGPALVWEFCCR 234
EFC R
Sbjct: 259 -------EFCRR 263
>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridinyl-Triazine Inhibitor
pdb|2QU5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzimidazole Inhibitor
pdb|2QU6|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|2QU6|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|3B8Q|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8Q|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|2RL5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A 2,3-Dihydro-1,4-Benzoxazine Inhibitor
pdb|3BE2|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzamide Inhibitor
pdb|3CP9|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CP9|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPB|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPB|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPC|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPC|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3DTW|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
pdb|3DTW|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
Length = 314
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 38/193 (19%)
Query: 61 HENLNPFIGFLWDPTGPALV-WEFCCRGSLE-----------------DVLVQDEIKLDW 102
H N+ +G P GP +V EFC G+L + L +D + L+
Sbjct: 81 HLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEH 140
Query: 103 TFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPR 162
S + +GM +L S +H +L +RN ++ + V+KI D+ L R
Sbjct: 141 LICYSF--QVAKGMEFLASRKC-IHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVR 197
Query: 163 QKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFLWD 221
+ AR L W APE + D + ++ DV+SFG+++ E+ G +P+ G D
Sbjct: 198 KGDARLPLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSLG-----ASPYPGVKID 248
Query: 222 PTGPALVWEFCCR 234
EFC R
Sbjct: 249 E-------EFCRR 254
>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|2P2I|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|3EFL|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
pdb|3EFL|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
Length = 314
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 38/193 (19%)
Query: 61 HENLNPFIGFLWDPTGPALVW-EFCCRGSLE-----------------DVLVQDEIKLDW 102
H N+ +G P GP +V EFC G+L + L +D + L+
Sbjct: 81 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEH 140
Query: 103 TFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPR 162
S + +GM +L S +H +L +RN ++ + V+KI D+ L R
Sbjct: 141 LICYSF--QVAKGMEFLASRKC-IHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVR 197
Query: 163 QKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFLWD 221
+ AR L W APE + D + ++ DV+SFG+++ E+ G +P+ G D
Sbjct: 198 KGDARLPLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSLG-----ASPYPGVKID 248
Query: 222 PTGPALVWEFCCR 234
EFC R
Sbjct: 249 E-------EFCRR 254
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 20/139 (14%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKT 165
+ + ++ GM YL++ +H +L +RNC++ + +KI D+ + D +K
Sbjct: 135 IQMAGEIADGMAYLNANKF-VHRDLAARNCMVAEDFTVKIGDFGMTR--DIXETDXXRKG 191
Query: 166 ARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL------QGLRHENLNPFI 216
+ LL W +PE L+D + DV+SFG+++ E+ QGL +E + F+
Sbjct: 192 GKGLLPVRWMSPESLKDGVF----TTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFV 247
Query: 217 ---GFLWDPTG-PALVWEF 231
G L P P +++E
Sbjct: 248 MEGGLLDKPDNCPDMLFEL 266
>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel
4-amino-furo[2,3-d]pyrimidine
Length = 316
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 38/193 (19%)
Query: 61 HENLNPFIGFLWDPTGPALVW-EFCCRGSLE-----------------DVLVQDEIKLDW 102
H N+ +G P GP +V EFC G+L + L +D + L+
Sbjct: 90 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEH 149
Query: 103 TFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPR 162
S + +GM +L S +H +L +RN ++ + V+KI D+ L R
Sbjct: 150 LICYSF--QVAKGMEFLASR-KCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVR 206
Query: 163 QKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFLWD 221
+ AR L W APE + D + ++ DV+SFG+++ E+ G +P+ G D
Sbjct: 207 KGDARLPLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSLG-----ASPYPGVKID 257
Query: 222 PTGPALVWEFCCR 234
EFC R
Sbjct: 258 E-------EFCRR 263
>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr)
Kinase Domain
Length = 316
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 42/195 (21%)
Query: 61 HENLNPFIGFLWDPTGPALVW-EFCCRGSLE-----------------DVLVQDEIKLDW 102
H N+ +G P GP +V EFC G+L + L +D + L+
Sbjct: 90 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEH 149
Query: 103 TFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL--NSFYDAQNIP 160
S + +GM +L S +H +L +RN ++ + V+KI D+ L + + D +
Sbjct: 150 LICYSF--QVAKGMEFLASR-KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDXV- 205
Query: 161 PRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFL 219
R+ AR L W APE + D + ++ DV+SFG+++ E+ G +P+ G
Sbjct: 206 -RKGDARLPLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSLG-----ASPYPGVK 255
Query: 220 WDPTGPALVWEFCCR 234
D EFC R
Sbjct: 256 IDE-------EFCRR 263
>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Axitinib (Ag-013736)
(N-Methyl-2-(
3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-
Benzamide)
pdb|4AGD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sunitinib (Su11248) (N-2-
Diethylaminoethyl)-5-((Z)-(5-Fluoro-2-Oxo-1h-Indol-3-
Ylidene)methyl)-2,4-Dimethyl-1h-Pyrrole-3-Carboxamide)
pdb|4ASD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sorafenib (Bay 43-9006)
pdb|4ASE|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Tivozanib (Av-951)
Length = 353
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 42/195 (21%)
Query: 61 HENLNPFIGFLWDPTGPALVW-EFCCRGSLE-----------------DVLVQDEIKLDW 102
H N+ +G P GP +V EFC G+L + L +D + L+
Sbjct: 127 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEH 186
Query: 103 TFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL--NSFYDAQNIP 160
S + +GM +L S +H +L +RN ++ + V+KI D+ L + + D +
Sbjct: 187 LICYSF--QVAKGMEFLASR-KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV- 242
Query: 161 PRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFL 219
R+ AR L W APE + D + ++ DV+SFG+++ E+ G +P+ G
Sbjct: 243 -RKGDARLPLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSLG-----ASPYPGVK 292
Query: 220 WDPTGPALVWEFCCR 234
D EFC R
Sbjct: 293 IDE-------EFCRR 300
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 254 LSLLTDLVRGMRYLHSVPHRLHELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVR 313
L D+ + Y+ RL L W APE + D + ++ DV+SFG+++ E+
Sbjct: 229 FGLARDIYKDPDYVRKGDARL-PLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSL 283
Query: 314 G 314
G
Sbjct: 284 G 284
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 16/120 (13%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKT 165
+ + ++ GM YL++ +H +L +RNC++ + +KI D+ + D +K
Sbjct: 126 IQMAGEIADGMAYLNANKF-VHRDLAARNCMVAEDFTVKIGDFGMTR--DIXETDXXRKG 182
Query: 166 ARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL------QGLRHENLNPFI 216
+ LL W +PE L+D + DV+SFG+++ E+ QGL +E + F+
Sbjct: 183 GKGLLPVRWMSPESLKDGVF----TTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFV 238
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 16/207 (7%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 6 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIK-LDWTFRLSLLTDLVRGMRYL 119
H N+ + + LV+EF L+D + + + S L L++G+ +
Sbjct: 63 HPNIVKLLDVIHTENKLYLVFEFLSM-DLKDFMDASALTGIPLPLIKSYLFQLLQGLAFC 121
Query: 120 HSVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPEL 176
HS HR LH +L +N +I+ +K+ D+ L A +P R L + APE+
Sbjct: 122 HS--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEI 176
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVV 203
L + S D++S G I E+V
Sbjct: 177 LLGCKYY---STAVDIWSLGCIFAEMV 200
>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyrazolone Inhibitor
Length = 314
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 42/195 (21%)
Query: 61 HENLNPFIGFLWDPTGPALV-WEFCCRGSLE-----------------DVLVQDEIKLDW 102
H N+ +G P GP +V EFC G+L + L +D + L+
Sbjct: 81 HLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEH 140
Query: 103 TFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL--NSFYDAQNIP 160
S + +GM +L S +H +L +RN ++ + V+KI D+ L + + D +
Sbjct: 141 LICYSF--QVAKGMEFLASRKC-IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV- 196
Query: 161 PRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFL 219
R+ AR L W APE + D + ++ DV+SFG+++ E+ G +P+ G
Sbjct: 197 -RKGDARLPLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSLG-----ASPYPGVK 246
Query: 220 WDPTGPALVWEFCCR 234
D EFC R
Sbjct: 247 IDE-------EFCRR 254
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 254 LSLLTDLVRGMRYLHSVPHRLHELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVR 313
L D+ + Y+ RL L W APE + D + ++ DV+SFG+++ E+
Sbjct: 183 FGLARDIYKDPDYVRKGDARL-PLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSL 237
Query: 314 G 314
G
Sbjct: 238 G 238
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 16/207 (7%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 7 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIK-LDWTFRLSLLTDLVRGMRYL 119
H N+ + + LV+EF L+D + + + S L L++G+ +
Sbjct: 64 HPNIVKLLDVIHTENKLYLVFEFLSM-DLKDFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 120 HSVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPEL 176
HS HR LH +L +N +I+ +K+ D+ L A +P R L + APE+
Sbjct: 123 HS--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEI 177
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVV 203
L + S D++S G I E+V
Sbjct: 178 LLGCKYY---STAVDIWSLGCIFAEMV 201
>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2
With A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 318
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 42/195 (21%)
Query: 61 HENLNPFIGFLWDPTGPALVW-EFCCRGSLE-----------------DVLVQDEIKLDW 102
H N+ +G P GP +V EFC G+L + L +D + L+
Sbjct: 92 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKEAPEDLYKDFLTLEH 151
Query: 103 TFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL--NSFYDAQNIP 160
S + +GM +L S +H +L +RN ++ + V+KI D+ L + + D +
Sbjct: 152 LICYSF--QVAKGMEFLASR-KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV- 207
Query: 161 PRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFL 219
R+ AR L W APE + D + ++ DV+SFG+++ E+ G +P+ G
Sbjct: 208 -RKGDARLPLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSLG-----ASPYPGVK 257
Query: 220 WDPTGPALVWEFCCR 234
D EFC R
Sbjct: 258 IDE-------EFCRR 265
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 254 LSLLTDLVRGMRYLHSVPHRLHELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVR 313
L D+ + Y+ RL L W APE + D + ++ DV+SFG+++ E+
Sbjct: 194 FGLARDIYKDPDYVRKGDARL-PLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSL 248
Query: 314 G 314
G
Sbjct: 249 G 249
>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy)
Quinolin-4-Yloxy)benzofuran-3-Carboxamide)
pdb|4AG8|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Axitinib (Ag-013736)
(N-Methyl-2-(3-((E)-2-Pyridin-2-
Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-Benzamide)
Length = 316
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 42/195 (21%)
Query: 61 HENLNPFIGFLWDPTGPALVW-EFCCRGSLE-----------------DVLVQDEIKLDW 102
H N+ +G P GP +V EFC G+L + L +D + L+
Sbjct: 90 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEH 149
Query: 103 TFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL--NSFYDAQNIP 160
S + +GM +L S +H +L +RN ++ + V+KI D+ L + + D +
Sbjct: 150 LICYSF--QVAKGMEFLASR-KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV- 205
Query: 161 PRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFL 219
R+ AR L W APE + D + ++ DV+SFG+++ E+ G +P+ G
Sbjct: 206 -RKGDARLPLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSLG-----ASPYPGVK 255
Query: 220 WDPTGPALVWEFCCR 234
D EFC R
Sbjct: 256 IDE-------EFCRR 263
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 254 LSLLTDLVRGMRYLHSVPHRLHELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVR 313
L D+ + Y+ RL L W APE + D + ++ DV+SFG+++ E+
Sbjct: 192 FGLARDIYKDPDYVRKGDARL-PLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSL 246
Query: 314 G 314
G
Sbjct: 247 G 247
>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridyl-Pyrimidine Benzimidazole Inhibitor
Length = 314
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 42/195 (21%)
Query: 61 HENLNPFIGFLWDPTGPALV-WEFCCRGSLE-----------------DVLVQDEIKLDW 102
H N+ +G P GP +V EFC G+L + L +D + L+
Sbjct: 81 HLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEH 140
Query: 103 TFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL--NSFYDAQNIP 160
S + +GM +L S +H +L +RN ++ + V+KI D+ L + + D +
Sbjct: 141 LICYSF--QVAKGMEFLASRKC-IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV- 196
Query: 161 PRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFL 219
R+ AR L W APE + D + ++ DV+SFG+++ E+ G +P+ G
Sbjct: 197 -RKGDARLPLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSLG-----ASPYPGVK 246
Query: 220 WDPTGPALVWEFCCR 234
D EFC R
Sbjct: 247 IDE-------EFCRR 254
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 254 LSLLTDLVRGMRYLHSVPHRLHELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVR 313
L D+ + Y+ RL L W APE + D + ++ DV+SFG+++ E+
Sbjct: 183 FGLARDIYKDPDYVRKGDARL-PLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSL 237
Query: 314 G 314
G
Sbjct: 238 G 238
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 16/137 (11%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNIPPRQK 164
+ + ++ GM YL++ +H +L +RNC++ + +KI D+ + Y+ K
Sbjct: 135 IQMAGEIADGMAYLNANKF-VHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 193
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV------LQGLRHENLNPFI-- 216
+ W +PE L+D + DV+SFG+++ E+ QGL +E + F+
Sbjct: 194 GLLPVRWMSPESLKDGVF----TTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVME 249
Query: 217 -GFLWDPTG-PALVWEF 231
G L P P +++E
Sbjct: 250 GGLLDKPDNCPDMLFEL 266
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 16/137 (11%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNIPPRQK 164
+ + ++ GM YL++ +H +L +RNC++ + +KI D+ + Y+ K
Sbjct: 128 IQMAGEIADGMAYLNANKF-VHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 186
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV------LQGLRHENLNPFI-- 216
+ W +PE L+D + DV+SFG+++ E+ QGL +E + F+
Sbjct: 187 GLLPVRWMSPESLKDGVF----TTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVME 242
Query: 217 -GFLWDPTG-PALVWEF 231
G L P P +++E
Sbjct: 243 GGLLDKPDNCPDMLFEL 259
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 16/137 (11%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNIPPRQK 164
+ + ++ GM YL++ +H +L +RNC++ + +KI D+ + Y+ K
Sbjct: 132 IQMAGEIADGMAYLNANKF-VHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 190
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV------LQGLRHENLNPFI-- 216
+ W +PE L+D + DV+SFG+++ E+ QGL +E + F+
Sbjct: 191 GLLPVRWMSPESLKDGVF----TTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVME 246
Query: 217 -GFLWDPTG-PALVWEF 231
G L P P +++E
Sbjct: 247 GGLLDKPDNCPDMLFEL 263
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 16/137 (11%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNIPPRQK 164
+ + ++ GM YL++ +H +L +RNC++ + +KI D+ + Y+ K
Sbjct: 134 IQMAGEIADGMAYLNANKF-VHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 192
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV------LQGLRHENLNPFI-- 216
+ W +PE L+D + DV+SFG+++ E+ QGL +E + F+
Sbjct: 193 GLLPVRWMSPESLKDGVF----TTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVME 248
Query: 217 -GFLWDPTG-PALVWEF 231
G L P P +++E
Sbjct: 249 GGLLDKPDNCPDMLFEL 265
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 16/137 (11%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNIPPRQK 164
+ + ++ GM YL++ +H +L +RNC++ + +KI D+ + Y+ K
Sbjct: 131 IQMAGEIADGMAYLNANKF-VHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 189
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV------LQGLRHENLNPFI-- 216
+ W +PE L+D + DV+SFG+++ E+ QGL +E + F+
Sbjct: 190 GLLPVRWMSPESLKDGVF----TTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVME 245
Query: 217 -GFLWDPTG-PALVWEF 231
G L P P +++E
Sbjct: 246 GGLLDKPDNCPDMLFEL 262
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 25/165 (15%)
Query: 60 RHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL-VQDEIKLDWTFR------------- 105
+H+N+ +G ++ E+ +G+L + L + L++++
Sbjct: 92 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 151
Query: 106 -LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQK 164
+S + RGM YL S +H +L +RN ++ V+KI D+ L D +I +K
Sbjct: 152 LVSCAYQVARGMEYLAS-KKCIHRDLAARNVLVTEDNVMKIADFGLAR--DIHHIDYYKK 208
Query: 165 TARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
T L W APE L D + + DV+SFG+++ E+ G
Sbjct: 209 TTNGRLPVKWMAPEALFDRIY----THQSDVWSFGVLLWEIFTLG 249
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 28/177 (15%)
Query: 60 RHENLNPFIGFLWDPTGPALV-WEFCCRGSLEDVLVQDEI-KLDWTFR------------ 105
+HEN+ +G GP LV E+CC G L + L + L++++
Sbjct: 108 QHENIVNLLGAC-THGGPVLVITEYCCYGDLLNFLRRKRPPGLEYSYNPSHNPEEQLSSR 166
Query: 106 --LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPR 162
L + + +GM +L S + +H ++ +RN ++ V KI D+ L + N +
Sbjct: 167 DLLHFSSQVAQGMAFLAS-KNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 225
Query: 163 QKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFL 219
+ W APE + D + ++ DV+S+GI++ E+ G LNP+ G L
Sbjct: 226 GNARLPVKWMAPESIFDCVYTVQS----DVWSYGILLWEIFSLG-----LNPYPGIL 273
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 16/137 (11%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNIPPRQK 164
+ + ++ GM YL++ +H +L +RNC++ + +KI D+ + Y+ K
Sbjct: 163 IQMAGEIADGMAYLNANKF-VHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 221
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV------LQGLRHENLNPFI-- 216
+ W +PE L+D + DV+SFG+++ E+ QGL +E + F+
Sbjct: 222 GLLPVRWMSPESLKDGVF----TTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVME 277
Query: 217 -GFLWDPTG-PALVWEF 231
G L P P +++E
Sbjct: 278 GGLLDKPDNCPDMLFEL 294
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 16/207 (7%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 4 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIK-LDWTFRLSLLTDLVRGMRYL 119
H N+ + + LV+EF + L+D + + + S L L++G+ +
Sbjct: 61 HPNIVKLLDVIHTENKLYLVFEFLHQ-DLKDFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 120 HSVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPEL 176
HS HR LH +L N +I+ +K+ D+ L A +P R L + APE+
Sbjct: 120 HS--HRVLHRDLKPENLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEI 174
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVV 203
L + S D++S G I E+V
Sbjct: 175 LLGCKYY---STAVDIWSLGCIFAEMV 198
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 25/165 (15%)
Query: 60 RHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL-VQDEIKLDWTFR------------- 105
+H+N+ +G ++ E+ +G+L + L + L++++
Sbjct: 133 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 192
Query: 106 -LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQK 164
+S + RGM YL S +H +L +RN ++ V+KI D+ L D +I +K
Sbjct: 193 LVSCAYQVARGMEYLAS-KKCIHRDLAARNVLVTEDNVMKIADFGLAR--DIHHIDYYKK 249
Query: 165 TARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
T L W APE L D + + DV+SFG+++ E+ G
Sbjct: 250 TTNGRLPVKWMAPEALFDRIY----THQSDVWSFGVLLWEIFTLG 290
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 16/137 (11%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNIPPRQK 164
+ + ++ GM YL++ +H +L +RNC++ + +KI D+ + Y+ K
Sbjct: 134 IQMAGEIADGMAYLNANKF-VHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 192
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV------LQGLRHENLNPFI-- 216
+ W +PE L+D + DV+SFG+++ E+ QGL +E + F+
Sbjct: 193 GLLPVRWMSPESLKDGVF----TTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVME 248
Query: 217 -GFLWDPTG-PALVWEF 231
G L P P +++E
Sbjct: 249 GGLLDKPDNCPDMLFEL 265
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 25/165 (15%)
Query: 60 RHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL-VQDEIKLDWTFR------------- 105
+H+N+ +G ++ E+ +G+L + L + L++++
Sbjct: 85 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 144
Query: 106 -LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQK 164
+S + RGM YL S +H +L +RN ++ V+KI D+ L D +I +K
Sbjct: 145 LVSCAYQVARGMEYLAS-KKCIHRDLAARNVLVTEDNVMKIADFGLAR--DIHHIDYYKK 201
Query: 165 TARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
T L W APE L D + + DV+SFG+++ E+ G
Sbjct: 202 TTNGRLPVKWMAPEALFDRIY----THQSDVWSFGVLLWEIFTLG 242
>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156.
pdb|2X4F|B Chain B, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156
Length = 373
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 20/192 (10%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRG 115
+ L H NL LV E+ G L D ++ + L + + + G
Sbjct: 140 MNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEG 199
Query: 116 MRYLHSVPHRLHGNLTSRN--CVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTA 173
+R++H + + LH +L N CV +KI D+ L A+ PR+K ++ +
Sbjct: 200 IRHMHQM-YILHLDLKPENILCVNRDAKQIKIIDFGL-----ARRYKPREKL--KVNFGT 251
Query: 174 PELLRDEAHRLRG-SQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFLWDPTGPALVWEFC 232
PE L E S P D++S G+I ++L G L+PF+G D L
Sbjct: 252 PEFLAPEVVNYDFVSFPTDMWSVGVIAY-MLLSG-----LSPFLG---DNDAETLNNILA 302
Query: 233 CRGSLEDVLVQD 244
CR LED QD
Sbjct: 303 CRWDLEDEEFQD 314
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 25/165 (15%)
Query: 60 RHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL-VQDEIKLDWTFR------------- 105
+H+N+ +G ++ E+ +G+L + L + L++++
Sbjct: 84 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 143
Query: 106 -LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQK 164
+S + RGM YL S +H +L +RN ++ V+KI D+ L D +I +K
Sbjct: 144 LVSCAYQVARGMEYLAS-KKCIHRDLAARNVLVTEDNVMKIADFGLAR--DIHHIDYYKK 200
Query: 165 TARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
T L W APE L D + + DV+SFG+++ E+ G
Sbjct: 201 TTNGRLPVKWMAPEALFDRIY----THQSDVWSFGVLLWEIFTLG 241
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 8 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 64
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 65 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 124
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R L + APE+L
Sbjct: 125 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEIL 179
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 180 LGCKYY---STAVDIWSLGCIFAEMV 202
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 16/137 (11%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNIPPRQK 164
+ + ++ GM YL++ +H +L +RNC++ + +KI D+ + Y+ K
Sbjct: 141 IQMAGEIADGMAYLNANKF-VHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 199
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV------LQGLRHENLNPFI-- 216
+ W +PE L+D + DV+SFG+++ E+ QGL +E + F+
Sbjct: 200 GLLPVRWMSPESLKDGVF----TTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVME 255
Query: 217 -GFLWDPTG-PALVWEF 231
G L P P +++E
Sbjct: 256 GGLLDKPDNCPDMLFEL 272
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 25/165 (15%)
Query: 60 RHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL-VQDEIKLDWTFR------------- 105
+H+N+ +G ++ E+ +G+L + L + L++++
Sbjct: 81 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 140
Query: 106 -LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQK 164
+S + RGM YL S +H +L +RN ++ V+KI D+ L D +I +K
Sbjct: 141 LVSCAYQVARGMEYLAS-KKCIHRDLAARNVLVTEDNVMKIADFGLAR--DIHHIDYYKK 197
Query: 165 TARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
T L W APE L D + + DV+SFG+++ E+ G
Sbjct: 198 TTNGRLPVKWMAPEALFDRIY----THQSDVWSFGVLLWEIFTLG 238
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 16/137 (11%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNIPPRQK 164
+ + ++ GM YL++ +H +L +RNC++ + +KI D+ + Y+ K
Sbjct: 141 IQMAGEIADGMAYLNANKF-VHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 199
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV------LQGLRHENLNPFI-- 216
+ W +PE L+D + DV+SFG+++ E+ QGL +E + F+
Sbjct: 200 GLLPVRWMSPESLKDGVF----TTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVME 255
Query: 217 -GFLWDPTG-PALVWEF 231
G L P P +++E
Sbjct: 256 GGLLDKPDNCPDMLFEL 272
>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain
pdb|4GT4|B Chain B, Structure Of Unliganded, Inactive Ror2 Kinase Domain
Length = 308
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 26/176 (14%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ-------DEIKLDWTFR------ 105
L+H N+ +G + ++++ +C G L + LV D T +
Sbjct: 86 LQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPP 145
Query: 106 --LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPR 162
+ L+ + GM YL S H +H +L +RN ++ + +KI+D L Y A
Sbjct: 146 DFVHLVAQIAAGMEYLSS-HHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLL 204
Query: 163 QKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGF 218
+ + W APE + + S D++S+G+++ EV GL+ P+ G+
Sbjct: 205 GNSLLPIRWMAPEAIM----YGKFSIDSDIWSYGVVLWEVFSYGLQ-----PYCGY 251
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 4 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 61 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 120
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R L + APE+L
Sbjct: 121 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEIL 175
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 176 LGCKYY---STAVDIWSLGCIFAEMV 198
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 25/165 (15%)
Query: 60 RHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLV---------------QDEIKLDWTF 104
+H+N+ +G ++ E+ +G+L + L E +L
Sbjct: 77 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKD 136
Query: 105 RLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQK 164
+S + RGM YL S +H +L +RN ++ V+KI D+ L D +I +K
Sbjct: 137 LVSCAYQVARGMEYLAS-KKCIHRDLAARNVLVTEDNVMKIADFGLAR--DIHHIDYYKK 193
Query: 165 TARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
T L W APE L D + + DV+SFG+++ E+ G
Sbjct: 194 TTNGRLPVKWMAPEALFDRIY----THQSDVWSFGVLLWEIFTLG 234
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 91/210 (43%), Gaps = 18/210 (8%)
Query: 28 GDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPA------LVW 81
G L +K + + G+ E + ++ L + H N+ + G P LV
Sbjct: 49 GQLAAIKVMDVTGDEEEEIKQEINMLKKYS--HHRNIATYYGAFIKKNPPGMDDQLWLVM 106
Query: 82 EFCCRGSLEDVLVQ---DEIKLDWTFRLSLLTDLVRGMRYLHSVPHR-LHGNLTSRNCVI 137
EFC GS+ D++ + +K +W + +++RG+ +LH H+ +H ++ +N ++
Sbjct: 107 EFCGAGSVTDLIKNTKGNTLKEEWI--AYICREILRGLSHLHQ--HKVIHRDIKGQNVLL 162
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLR-DEAHRLRGSQPGDVYSFG 196
+K+ D+ +++ D + + R W APE++ DE D++S G
Sbjct: 163 TENAEVKLVDFGVSAQLD-RTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLG 221
Query: 197 IIIQEVVLQGLRHENLNPFIGFLWDPTGPA 226
I E+ +++P P PA
Sbjct: 222 ITAIEMAEGAPPLCDMHPMRALFLIPRNPA 251
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query: 209 HENLNPFIGFLWDPTGPA------LVWEFCCRGSLEDVLVQ---DEIKLDWTFRLSLLTD 259
H N+ + G P LV EFC GS+ D++ + +K +W + +
Sbjct: 80 HRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWI--AYICRE 137
Query: 260 LVRGMRYL--HSVPHR 273
++RG+ +L H V HR
Sbjct: 138 ILRGLSHLHQHKVIHR 153
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 3 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 59
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 60 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 119
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R L + APE+L
Sbjct: 120 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEIL 174
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 175 LGCKYY---STAVDIWSLGCIFAEMV 197
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 25/165 (15%)
Query: 60 RHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLV---------------QDEIKLDWTF 104
+H+N+ +G ++ E+ +G+L + L E +L
Sbjct: 92 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKD 151
Query: 105 RLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQK 164
+S + RGM YL S +H +L +RN ++ V+KI D+ L D +I +K
Sbjct: 152 LVSCAYQVARGMEYLAS-KKCIHRDLAARNVLVTEDNVMKIADFGLAR--DIHHIDYYKK 208
Query: 165 TARELL---WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
T L W APE L D + + DV+SFG+++ E+ G
Sbjct: 209 TTNGRLPVKWMAPEALFDRIY----THQSDVWSFGVLLWEIFTLG 249
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 5 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 62 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 121
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R L + APE+L
Sbjct: 122 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEIL 176
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 177 LGCKYY---STAVDIWSLGCIFAEMV 199
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 5 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 62 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 121
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R L + APE+L
Sbjct: 122 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEIL 176
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 177 LGCKYY---STAVDIWSLGCIFAEMV 199
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 7 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 64 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 123
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R L + APE+L
Sbjct: 124 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEIL 178
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 179 LGCKYY---STAVDIWSLGCIFAEMV 201
>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2
pdb|3ZZW|B Chain B, Crystal Structure Of The Kinase Domain Of Ror2
Length = 289
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 26/176 (14%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQ-------DEIKLDWTFR------ 105
L+H N+ +G + ++++ +C G L + LV D T +
Sbjct: 69 LQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPP 128
Query: 106 --LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPR 162
+ L+ + GM YL S H +H +L +RN ++ + +KI+D L Y A
Sbjct: 129 DFVHLVAQIAAGMEYLSS-HHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLL 187
Query: 163 QKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGF 218
+ + W APE + + S D++S+G+++ EV GL+ P+ G+
Sbjct: 188 GNSLLPIRWMAPEAIM----YGKFSIDSDIWSYGVVLWEVFSYGLQ-----PYCGY 234
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 6 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 63 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 122
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R L + APE+L
Sbjct: 123 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEIL 177
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 178 LGCKYY---STAVDIWSLGCIFAEMV 200
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 4 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 61 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 120
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R L + APE+L
Sbjct: 121 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEIL 175
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 176 LGCKYY---STAVDIWSLGCIFAEMV 198
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 3 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 59
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 60 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 119
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R L + APE+L
Sbjct: 120 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEIL 174
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 175 LGCKYY---STAVDIWSLGCIFAEMV 197
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V + + L T + S ++ + L+ L
Sbjct: 4 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELN 60
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 61 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 120
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R T L + APE+L
Sbjct: 121 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVVTLWYRAPEIL 175
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 176 LGCKYY---STAVDIWSLGCIFAEMV 198
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V + + L T + S ++ + L+ L
Sbjct: 3 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELN 59
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 60 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 119
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R T L + APE+L
Sbjct: 120 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEVVTLWYRAPEIL 174
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 175 LGCKYY---STAVDIWSLGCIFAEMV 197
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 4 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 61 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 120
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R L + APE+L
Sbjct: 121 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEIL 175
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 176 LGCKYY---STAVDIWSLGCIFAEMV 198
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 5 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + S L L++G+ + H
Sbjct: 62 HPNIVKLLDVIHTENKLYLVFEFLSMDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 121
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L N +I+ +K+ D+ L A +P R L + APE+L
Sbjct: 122 S--HRVLHRDLKPENLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEIL 176
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 177 LGCKYY---STAVDIWSLGCIFAEMV 199
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 7 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 64 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 123
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R L + APE+L
Sbjct: 124 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEIL 178
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 179 LGCKYY---STAVDIWSLGCIFAEMV 201
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 6 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 63 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 122
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R L + APE+L
Sbjct: 123 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEIL 177
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 178 LGCKYY---STAVDIWSLGCIFAEMV 200
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 4 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 61 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 120
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R L + APE+L
Sbjct: 121 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEIL 175
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 176 LGCKYY---STAVDIWSLGCIFAEMV 198
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 7 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + S L L++G+ + H
Sbjct: 64 HPNIVKLLDVIHTENKLYLVFEFLSMDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 123
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L N +I+ +K+ D+ L A +P R L + APE+L
Sbjct: 124 S--HRVLHRDLKPENLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEIL 178
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 179 LGCKYY---STAVDIWSLGCIFAEMV 201
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 5 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 62 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 121
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L N +I+ +K+ D+ L A +P R L + APE+L
Sbjct: 122 S--HRVLHRDLKPENLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEIL 176
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 177 LGCKYY---STAVDIWSLGCIFAEMV 199
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 6 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + + S L L++G+ + H
Sbjct: 63 HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 122
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L N +I+ +K+ D+ L A +P R L + APE+L
Sbjct: 123 S--HRVLHRDLKPENLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEIL 177
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 178 LGCKYY---STAVDIWSLGCIFAEMV 200
>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
Length = 613
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 50 VDHLLQLQGLRHENLNPFIGFL---WDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRL 106
+ +++ + H+ NP+I L LV E G L LV ++ +
Sbjct: 380 TEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVA 439
Query: 107 SLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA 166
LL + GM+YL + +H NL +RN ++ R KI+D+ L+ A + ++A
Sbjct: 440 ELLHQVSMGMKYLEE-KNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSA 498
Query: 167 RE--LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ L W APE + R DV+S+G+ + E + G +
Sbjct: 499 GKWPLKWYAPECINFRKFSSR----SDVWSYGVTMWEALSYGQK 538
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNIPPRQK 164
+ + ++ GM YL++ +H +L +RNC + + +KI D+ + Y+ K
Sbjct: 128 IQMAGEIADGMAYLNANKF-VHRDLAARNCXVAEDFTVKIGDFGMTRDIYETDYYRKGGK 186
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV------LQGLRHENLNPFI 216
+ W +PE L+D + DV+SFG+++ E+ QGL +E + F+
Sbjct: 187 GLLPVRWMSPESLKDGVF----TTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFV 240
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 14/206 (6%)
Query: 1 SLQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLR 60
+ Q V +G + Y V V + + G++V +K + L T + S ++ + L+ L
Sbjct: 7 NFQKVEKIGEGT--YGV-VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 61 HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLH 120
H N+ + + LV+EF + + + S L L++G+ + H
Sbjct: 64 HPNIVKLLDVIHTENKLYLVFEFLHQDLKTFMDASALTGIPLPLIKSYLFQLLQGLAFCH 123
Query: 121 SVPHR-LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR--ELLWTAPELL 177
S HR LH +L +N +I+ +K+ D+ L A +P R L + APE+L
Sbjct: 124 S--HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEVVTLWYRAPEIL 178
Query: 178 RDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ S D++S G I E+V
Sbjct: 179 LGCKYY---STAVDIWSLGCIFAEMV 201
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 18/164 (10%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLE--------DVLVQDE----IKLDWT 103
L L+HE++ F G + +V+E+ G L D ++ E +L +
Sbjct: 69 LTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQS 128
Query: 104 FRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNIPPR 162
L + + GM YL S H +H +L +RNC++ ++KI D+ ++ Y
Sbjct: 129 QMLHIAQQIAAGMVYLAS-QHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVG 187
Query: 163 QKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
T + W PE + + + DV+S G+++ E+ G
Sbjct: 188 GHTMLPIRWMPPESIMYR----KFTTESDVWSLGVVLWEIFTYG 227
>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 337
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query: 59 LRHENLNPFIGFLWDPTGP----ALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 114
+RHEN+ FI TG L+ ++ GSL D L LD L L V
Sbjct: 88 MRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYL--KSTTLDAKSMLKLAYSSVS 145
Query: 115 GMRYLHS-------VPHRLHGNLTSRNCVIDARWVLKITDYALN----SFYDAQNIPPRQ 163
G+ +LH+ P H +L S+N ++ I D L S + +IPP
Sbjct: 146 GLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNT 205
Query: 164 KTARELLWTAPELLRDEAHR--LRGSQPGDVYSFGIIIQEVV 203
+ + + PE+L + +R + D+YSFG+I+ EV
Sbjct: 206 RVGTKR-YMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVA 246
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKT 165
L D+ RGM YL S +H NL +RN ++ +V KI D+ L+ Q + ++
Sbjct: 142 LHFAADVARGMDYL-SQKQFIHRNLAARNILVGENYVAKIADFGLSR---GQEVYVKKTM 197
Query: 166 AR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
R + W A E L + + DV+S+G+++ E+V G
Sbjct: 198 GRLPVRWMAIESLNYSVY----TTNSDVWSYGVLLWEIVSLG 235
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 35/184 (19%)
Query: 60 RHENLNPFIGFLWDPTGPALV-WEFCCRGSLEDVL----------------------VQD 96
+HEN+ +G GP LV E+CC G L + L +D
Sbjct: 93 QHENIVNLLGAC-THGGPVLVITEYCCYGDLLNFLRRKAEAMLGPSLAPGQDPEGLDKED 151
Query: 97 EIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYD 155
L+ L + + +GM +L S + +H ++ +RN ++ V KI D+ L +
Sbjct: 152 GRPLELRDLLHFSSQVAQGMAFLAS-KNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMN 210
Query: 156 AQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPF 215
N + + W APE + D + ++ DV+S+GI++ E+ G LNP+
Sbjct: 211 DSNYIVKGNARLPVKWMAPESIFDCVYTVQS----DVWSYGILLWEIFSLG-----LNPY 261
Query: 216 IGFL 219
G L
Sbjct: 262 PGIL 265
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 14/189 (7%)
Query: 23 KARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPAL--V 80
+ + +G ++ K + T K V + L+ L+H N+ + + D T L V
Sbjct: 26 RRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV 85
Query: 81 WEFCCRGSLEDVLVQ---DEIKLDWTFRLSLLTDLVRGMRYLHSVPHR----LHGNLTSR 133
E+C G L V+ + + LD F L ++T L ++ H LH +L
Sbjct: 86 MEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPA 145
Query: 134 NCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVY 193
N +D + +K+ D+ L A+ + + A+E + T + ++ +R+ ++ D++
Sbjct: 146 NVFLDGKQNVKLGDFGL-----ARILNHDEDFAKEFVGTPYYMSPEQMNRMSYNEKSDIW 200
Query: 194 SFGIIIQEV 202
S G ++ E+
Sbjct: 201 SLGCLLYEL 209
>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex
With Staurosporine
Length = 287
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%)
Query: 50 VDHLLQLQGLRHENLNPFIGFL---WDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRL 106
+ +++ + H+ NP+I L LV E G L LV ++ +
Sbjct: 54 TEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVA 113
Query: 107 SLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA 166
LL + GM+YL + +H +L +RN ++ R KI+D+ L+ A + ++A
Sbjct: 114 ELLHQVSMGMKYLEE-KNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSA 172
Query: 167 RE--LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ L W APE + + + S DV+S+G+ + E + G +
Sbjct: 173 GKWPLKWYAPECI----NFRKFSSRSDVWSYGVTMWEALSYGQK 212
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 15/156 (9%)
Query: 53 LLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWT--FRLSLLT 110
L QL + H N+ G +P LV E+ GSL +VL E +T +S
Sbjct: 53 LRQLSRVNHPNIVKLYGACLNPV--CLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCL 110
Query: 111 DLVRGMRYLHSVPHR--LHGNLTSRNCVIDARW-VLKITDYALNSFYDAQNIPPRQKTAR 167
+G+ YLHS+ + +H +L N ++ A VLKI D+ + D Q K +
Sbjct: 111 QCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFG--TACDIQTHMTNNKGSA 168
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
W APE+ + S+ DV+S+GII+ EV+
Sbjct: 169 A--WMAPEVFEGSNY----SEKCDVFSWGIILWEVI 198
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPF 317
W APE+ + S+ DV+S+GII+ EV+ R +PF
Sbjct: 170 WMAPEVFEGSNY----SEKCDVFSWGIILWEVITRRKPF 204
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 105 RLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNIPPRQ 163
+L + + GM YL S +H +L +RNC++ V+KI D+ L+ + Y A
Sbjct: 176 QLCIARQVAAGMAYL-SERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADG 234
Query: 164 KTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
A + W PE + R + DV+++G+++ E+ GL+
Sbjct: 235 NDAIPIRWMPPESI----FYNRYTTESDVWAYGVVLWEIFSYGLQ 275
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 15/156 (9%)
Query: 53 LLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWT--FRLSLLT 110
L QL + H N+ G +P LV E+ GSL +VL E +T +S
Sbjct: 52 LRQLSRVNHPNIVKLYGACLNPV--CLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCL 109
Query: 111 DLVRGMRYLHSVPHR--LHGNLTSRNCVIDARW-VLKITDYALNSFYDAQNIPPRQKTAR 167
+G+ YLHS+ + +H +L N ++ A VLKI D+ + D Q K +
Sbjct: 110 QCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFG--TACDIQTHMTNNKGSA 167
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
W APE+ + S+ DV+S+GII+ EV+
Sbjct: 168 A--WMAPEVFEGSNY----SEKCDVFSWGIILWEVI 197
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 279 WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPF 317
W APE+ + S+ DV+S+GII+ EV+ R +PF
Sbjct: 169 WMAPEVFEGSNY----SEKCDVFSWGIILWEVITRRKPF 203
>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With
N-(4-chlorophenyl)-2-
((pyridin-4-ylmethyl)amino)benzamide
Length = 360
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQK 164
+S + RGM +L S +H +L +RN ++ V+KI D+ L Y + +
Sbjct: 202 ISYSFQVARGMEFLSSRKC-IHRDLAARNILLSENNVVKICDFGLARDIYKNPDYVRKGD 260
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFLWDPTG 224
T L W APE + D+ + S DV+S+G+++ E+ G +P+ G D
Sbjct: 261 TRLPLKWMAPESIFDKIY----STKSDVWSYGVLLWEIFSLG-----GSPYPGVQMDE-- 309
Query: 225 PALVWEFCCR 234
+FC R
Sbjct: 310 -----DFCSR 314
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 254 LSLLTDLVRGMRYLHSVPHRLHELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV-V 312
L D+ + Y+ RL L W APE + D+ + S DV+S+G+++ E+ +
Sbjct: 243 FGLARDIYKNPDYVRKGDTRL-PLKWMAPESIFDKIY----STKSDVWSYGVLLWEIFSL 297
Query: 313 RGEPF 317
G P+
Sbjct: 298 GGSPY 302
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNIPPRQK 164
L++ + + GM YL + H +H +L +RNC++ V+KI D+ ++ Y +
Sbjct: 138 LAVASQVAAGMVYLAGL-HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGR 196
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
T + W PE + + + DV+SFG+++ E+ G
Sbjct: 197 TMLPIRWMPPESILYR----KFTTESDVWSFGVVLWEIFTYG 234
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNIPPRQK 164
L++ + + GM YL + H +H +L +RNC++ V+KI D+ ++ Y +
Sbjct: 132 LAVASQVAAGMVYLAGL-HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGR 190
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
T + W PE + + + DV+SFG+++ E+ G
Sbjct: 191 TMLPIRWMPPESILYR----KFTTESDVWSFGVVLWEIFTYG 228
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFYDAQNIPPRQK 164
L++ + + GM YL + H +H +L +RNC++ V+KI D+ ++ Y +
Sbjct: 161 LAVASQVAAGMVYLAGL-HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGR 219
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
T + W PE + + + DV+SFG+++ E+ G
Sbjct: 220 TMLPIRWMPPESILYR----KFTTESDVWSFGVVLWEIFTYG 257
>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3Q4T|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3SOC|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|3SOC|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|4ASX|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
pdb|4ASX|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
Length = 322
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 29/169 (17%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPA----LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTD 111
L G++HEN+ FIG T L+ F +GSL D L + + W +
Sbjct: 72 LPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVS--WNELCHIAET 129
Query: 112 LVRGMRYLHS---------VPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQN---- 158
+ RG+ YLH P H ++ S+N ++ I D+ L ++A
Sbjct: 130 MARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGD 189
Query: 159 ----IPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ R+ A E+L A RD R+ D+Y+ G+++ E+
Sbjct: 190 THGQVGTRRYMAPEVLEGAINFQRDAFLRI------DMYAMGLVLWELA 232
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 204 LQGLRHENLNPFIGFLWDPTGPA----LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTD 259
L G++HEN+ FIG T L+ F +GSL D L + + W +
Sbjct: 72 LPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVS--WNELCHIAET 129
Query: 260 LVRGMRYLH 268
+ RG+ YLH
Sbjct: 130 MARGLAYLH 138
>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 271
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 87/195 (44%), Gaps = 11/195 (5%)
Query: 23 KARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGP--ALV 80
K R+ G+ + +K + + + + +L+ H N+ P +G P P L+
Sbjct: 28 KGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87
Query: 81 WEFCCRGSLEDVLVQ-DEIKLDWTFRLSLLTDLVRGMRYLHSV-PHRLHGNLTSRNCVID 138
+ GSL +VL + +D + + D+ RGM +LH++ P L SR+ +ID
Sbjct: 88 THWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMID 147
Query: 139 ARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGII 198
+I+ + + + P R W APE L+ + + D++SF ++
Sbjct: 148 EDMTARISMADVKFSFQS---PGRMYAP---AWVAPEALQKKPEDT-NRRSADMWSFAVL 200
Query: 199 IQEVVLQGLRHENLN 213
+ E+V + + +L+
Sbjct: 201 LWELVTREVPFADLS 215
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 39/156 (25%)
Query: 204 LQGLRHENLNPFIGFLWDPTGP--ALVWEFCCRGSLEDVLVQ-DEIKLDWTFRLSLLTDL 260
L+ H N+ P +G P P L+ + GSL +VL + +D + + D+
Sbjct: 61 LRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDM 120
Query: 261 VRGMRYLHSV-----------------------------------PHRLHELLWTAPELL 285
RGM +LH++ P R++ W APE L
Sbjct: 121 ARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGRMYAPAWVAPEAL 180
Query: 286 RDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCMLS 321
+ + + D++SF +++ E+V R PF LS
Sbjct: 181 QKKPEDT-NRRSADMWSFAVLLWELVTREVPFADLS 215
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKT 165
L D+ RGM YL S +H +L +RN ++ +V KI D+ L+ Q + ++
Sbjct: 135 LHFAADVARGMDYL-SQKQFIHRDLAARNILVGENYVAKIADFGLSR---GQEVYVKKTM 190
Query: 166 AR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
R + W A E L + + DV+S+G+++ E+V G
Sbjct: 191 GRLPVRWMAIESLNYSVY----TTNSDVWSYGVLLWEIVSLG 228
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKT 165
L D+ RGM YL S +H +L +RN ++ +V KI D+ L+ Q + ++
Sbjct: 145 LHFAADVARGMDYL-SQKQFIHRDLAARNILVGENYVAKIADFGLSR---GQEVYVKKTM 200
Query: 166 AR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
R + W A E L + + DV+S+G+++ E+V G
Sbjct: 201 GRLPVRWMAIESLNYSVY----TTNSDVWSYGVLLWEIVSLG 238
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 82 EFCCRGSLED-VLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDAR 140
EFC +G+LE + + KLD L L + +G+ Y+HS +H +L N +
Sbjct: 114 EFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHS-KKLIHRDLKPSNIFLVDT 172
Query: 141 WVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQ 200
+KI D+ L + +N R ++ L + +PE + + + + D+Y+ G+I+
Sbjct: 173 KQVKIGDFGLVT--SLKNDGKRTRSKGTLRYMSPEQISSQDY----GKEVDLYALGLILA 226
Query: 201 EVV 203
E++
Sbjct: 227 ELL 229
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 230 EFCCRGSLED-VLVQDEIKLDWTFRLSLLTDLVRGMRYLHS 269
EFC +G+LE + + KLD L L + +G+ Y+HS
Sbjct: 114 EFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHS 154
>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Back Pocket Binder
Length = 368
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 22/126 (17%)
Query: 112 LVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL--NSFYDAQNIPPRQKTAR-E 168
+ +GM +L S +H +L +RN ++ + V+KI D+ L + + D + R+ AR
Sbjct: 209 VAKGMEFLASRKC-IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV--RKGDARLP 265
Query: 169 LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFLWDPTGPALV 228
L W APE + D + ++ DV+SFG+++ E+ G +P+ G D
Sbjct: 266 LKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSLG-----ASPYPGVKIDE------ 310
Query: 229 WEFCCR 234
EFC R
Sbjct: 311 -EFCRR 315
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 254 LSLLTDLVRGMRYLHSVPHRLHELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVR 313
L D+ + Y+ RL L W APE + D + ++ DV+SFG+++ E+
Sbjct: 244 FGLARDIYKDPDYVRKGDARL-PLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSL 298
Query: 314 G 314
G
Sbjct: 299 G 299
>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
pdb|1Y6B|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
Length = 366
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 22/126 (17%)
Query: 112 LVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL--NSFYDAQNIPPRQKTAR-E 168
+ +GM +L S +H +L +RN ++ + V+KI D+ L + + D + R+ AR
Sbjct: 207 VAKGMEFLASRKC-IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV--RKGDARLP 263
Query: 169 LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFLWDPTGPALV 228
L W APE + D + ++ DV+SFG+++ E+ G +P+ G D
Sbjct: 264 LKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSLG-----ASPYPGVKIDE------ 308
Query: 229 WEFCCR 234
EFC R
Sbjct: 309 -EFCRR 313
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 254 LSLLTDLVRGMRYLHSVPHRLHELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVR 313
L D+ + Y+ RL L W APE + D + ++ DV+SFG+++ E+
Sbjct: 242 FGLARDIYKDPDYVRKGDARL-PLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSL 296
Query: 314 G 314
G
Sbjct: 297 G 297
>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A
Novel Pyrrolopyrimidine Inhibitor
Length = 359
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 22/126 (17%)
Query: 112 LVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL--NSFYDAQNIPPRQKTAR-E 168
+ +GM +L S +H +L +RN ++ + V+KI D+ L + + D + R+ AR
Sbjct: 202 VAKGMEFLASRKC-IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV--RKGDARLP 258
Query: 169 LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFLWDPTGPALV 228
L W APE + D + ++ DV+SFG+++ E+ G +P+ G D
Sbjct: 259 LKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSLG-----ASPYPGVKIDE------ 303
Query: 229 WEFCCR 234
EFC R
Sbjct: 304 -EFCRR 308
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 254 LSLLTDLVRGMRYLHSVPHRLHELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVR 313
L D+ + Y+ RL L W APE + D + ++ DV+SFG+++ E+
Sbjct: 237 FGLARDIYKDPDYVRKGDARL-PLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSL 291
Query: 314 G 314
G
Sbjct: 292 G 292
>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With
Compound A
Length = 356
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 22/126 (17%)
Query: 112 LVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL--NSFYDAQNIPPRQKTAR-E 168
+ +GM +L S +H +L +RN ++ + V+KI D+ L + + D + R+ AR
Sbjct: 200 VAKGMEFLASRKC-IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV--RKGDARLP 256
Query: 169 LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNPFIGFLWDPTGPALV 228
L W APE + D + ++ DV+SFG+++ E+ G +P+ G D
Sbjct: 257 LKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSLG-----ASPYPGVKIDE------ 301
Query: 229 WEFCCR 234
EFC R
Sbjct: 302 -EFCRR 306
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 254 LSLLTDLVRGMRYLHSVPHRLHELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVR 313
L D+ + Y+ RL L W APE + D + ++ DV+SFG+++ E+
Sbjct: 235 FGLARDIYKDPDYVRKGDARL-PLKWMAPETIFDRVYTIQS----DVWSFGVLLWEIFSL 289
Query: 314 G 314
G
Sbjct: 290 G 290
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 75/168 (44%), Gaps = 18/168 (10%)
Query: 44 ELKSKSVDHLLQLQ-----GLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEI 98
+L+ V+H L+ + LRH N+ G+ D T L+ E+ RG + L Q
Sbjct: 50 QLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKEL-QKLS 108
Query: 99 KLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQN 158
K D + +T+L + Y HS +H ++ N ++ + LKI D+ + +
Sbjct: 109 KFDEQRTATYITELANALSYCHS-KRVIHRDIKPENLLLGSAGELKIADFGWSV-----H 162
Query: 159 IPPRQKTA--RELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
P ++T L + PE++ H + D++S G++ E ++
Sbjct: 163 APSSRRTTLCGTLDYLPPEMIEGRMH----DEKVDLWSLGVLCYEFLV 206
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 200 QEVVLQG-LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLT 258
+EV +Q LRH N+ G+ D T L+ E+ RG + L Q K D + +T
Sbjct: 62 REVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKEL-QKLSKFDEQRTATYIT 120
Query: 259 DLVRGMRYLHS--VPHR 273
+L + Y HS V HR
Sbjct: 121 ELANALSYCHSKRVIHR 137
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 87/202 (43%), Gaps = 30/202 (14%)
Query: 19 VVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIG----FLWDP 74
V K R +G +K V + E + K+ L L H N+ + G F +DP
Sbjct: 27 VFKAKHRIDGKTYVIKRVKYNNEKAEREVKA------LAKLDHVNIVHYNGCWDGFDYDP 80
Query: 75 TGPA------------LVWEFCCRGSLED-VLVQDEIKLDWTFRLSLLTDLVRGMRYLHS 121
+ + EFC +G+LE + + KLD L L + +G+ Y+HS
Sbjct: 81 ETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHS 140
Query: 122 VPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEA 181
++ +L N + +KI D+ L + +N R ++ L + +PE + +
Sbjct: 141 -KKLINRDLKPSNIFLVDTKQVKIGDFGLVT--SLKNDGKRXRSKGTLRYMSPEQISSQD 197
Query: 182 HRLRGSQPGDVYSFGIIIQEVV 203
+ + D+Y+ G+I+ E++
Sbjct: 198 Y----GKEVDLYALGLILAELL 215
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 217 GFLWDPTGPA------------LVWEFCCRGSLED-VLVQDEIKLDWTFRLSLLTDLVRG 263
GF +DP + + EFC +G+LE + + KLD L L + +G
Sbjct: 75 GFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKG 134
Query: 264 MRYLHS 269
+ Y+HS
Sbjct: 135 VDYIHS 140
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 14/166 (8%)
Query: 44 ELKSKSVDHLLQLQ-----GLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEI 98
+L+ V+H L+ + LRH N+ G+ D T L+ E+ RG + L Q
Sbjct: 50 QLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKEL-QKLS 108
Query: 99 KLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQN 158
K D + +T+L + Y HS +H ++ N ++ + LKI D+ + +
Sbjct: 109 KFDEQRTATYITELANALSYCHS-KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR 167
Query: 159 IPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
R L + PE++ H + D++S G++ E ++
Sbjct: 168 ---RXXLXGTLDYLPPEMIEGRMH----DEKVDLWSLGVLCYEFLV 206
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 200 QEVVLQG-LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLT 258
+EV +Q LRH N+ G+ D T L+ E+ RG + L Q K D + +T
Sbjct: 62 REVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKEL-QKLSKFDEQRTATYIT 120
Query: 259 DLVRGMRYLHS--VPHR 273
+L + Y HS V HR
Sbjct: 121 ELANALSYCHSKRVIHR 137
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKT 165
L + D+ GM YL S + LH +L +RNC++ + + D+ L+ + + + +
Sbjct: 150 LKFMVDIALGMEYL-SNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRI 208
Query: 166 AR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGL 207
A+ + W A E L D + + DV++FG+ + E+ +G+
Sbjct: 209 AKMPVKWIAIESLADRVY----TSKSDVWAFGVTMWEIATRGM 247
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFY 154
DE L +S + +GM+YL + +H +L +RN ++ +KI+D+ L+ Y
Sbjct: 143 DERALTMGDLISFAWQISQGMQYLAEM-KLVHRDLAARNILVAEGRKMKISDFGLSRDVY 201
Query: 155 DAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNP 214
+ + R + + W A E L D + + DV+SFG+++ E+V G NP
Sbjct: 202 EEDSXVKRSQGRIPVKWMAIESLFDHIY----TTQSDVWSFGVLLWEIVTLG-----GNP 252
Query: 215 FIGF 218
+ G
Sbjct: 253 YPGI 256
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFY 154
DE L +S + +GM+YL + +H +L +RN ++ +KI+D+ L+ Y
Sbjct: 143 DERALTMGDLISFAWQISQGMQYLAEM-KLVHRDLAARNILVAEGRKMKISDFGLSRDVY 201
Query: 155 DAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNP 214
+ + R + + W A E L D + + DV+SFG+++ E+V G NP
Sbjct: 202 EEDSYVKRSQGRIPVKWMAIESLFDHIY----TTQSDVWSFGVLLWEIVTLG-----GNP 252
Query: 215 FIGF 218
+ G
Sbjct: 253 YPGI 256
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 96 DEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALN-SFY 154
DE L +S + +GM+YL + +H +L +RN ++ +KI+D+ L+ Y
Sbjct: 143 DERALTMGDLISFAWQISQGMQYLAEM-SLVHRDLAARNILVAEGRKMKISDFGLSRDVY 201
Query: 155 DAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLNP 214
+ + R + + W A E L D + + DV+SFG+++ E+V G NP
Sbjct: 202 EEDSXVKRSQGRIPVKWMAIESLFDHIY----TTQSDVWSFGVLLWEIVTLG-----GNP 252
Query: 215 FIGF 218
+ G
Sbjct: 253 YPGI 256
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 2/161 (1%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRG 115
L H N+ + + ++ EFC G+++ V+++ E L + + +
Sbjct: 61 LASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDA 120
Query: 116 MRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPE 175
+ YLH +H +L + N + +K+ D+ +++ I R W APE
Sbjct: 121 LNYLHD-NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTXIQRRDSFIGTPYWMAPE 179
Query: 176 LLRDEAHRLRG-SQPGDVYSFGIIIQEVVLQGLRHENLNPF 215
++ E + R DV+S GI + E+ H LNP
Sbjct: 180 VVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPM 220
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 46/157 (29%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 262
++ L H N+ G + +P P +V EF G L L+ + W+ +L L+ D+
Sbjct: 76 IMSNLNHPNIVKLYGLMHNP--PRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIAL 133
Query: 263 GMRYL------------------------------------------HSVPHRLHELLWT 280
G+ Y+ HSV L W
Sbjct: 134 GIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGTSQQSVHSVSGLLGNFQWM 193
Query: 281 APELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPF 317
APE + E ++ D YSF +I+ ++ PF
Sbjct: 194 APETIGAEEESY--TEKADTYSFAMILYTILTGEGPF 228
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 46/157 (29%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 262
++ L H N+ G + +P P +V EF G L L+ + W+ +L L+ D+
Sbjct: 76 IMSNLNHPNIVKLYGLMHNP--PRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIAL 133
Query: 263 GMRYL------------------------------------------HSVPHRLHELLWT 280
G+ Y+ HSV L W
Sbjct: 134 GIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFSLSQQSVHSVSGLLGNFQWM 193
Query: 281 APELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPF 317
APE + E ++ D YSF +I+ ++ PF
Sbjct: 194 APETIGAEEESY--TEKADTYSFAMILYTILTGEGPF 228
>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In
Complex With A Diaminopyrimidine Carboxamide Inhibitor
Length = 277
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 16/174 (9%)
Query: 45 LKSKSVDHLLQLQGLRHENL-----NPFIGFL---WDPTGPALVWEFCCRGSLEDVLVQD 96
LK+++ D L+ + L N+ NP+I + + LV E G L L Q+
Sbjct: 46 LKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQN 105
Query: 97 EIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDA 156
D + L+ + GM+YL + +H +L +RN ++ + KI+D+ L+ A
Sbjct: 106 RHVKDKNI-IELVHQVSMGMKYLEE-SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA 163
Query: 157 QNIPPRQKTARE--LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ +T + + W APE + + + S DV+SFG+++ E G +
Sbjct: 164 DENXYKAQTHGKWPVKWYAPECI----NYYKFSSKSDVWSFGVLMWEAFSYGQK 213
>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 635
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVID 138
LV E G L L Q+ D + L+ + GM+YL + +H +L +RN ++
Sbjct: 446 LVMEMAELGPLNKYLQQNRHVKDKNI-IELVHQVSMGMKYLEE-SNFVHRDLAARNVLLV 503
Query: 139 ARWVLKITDYALNSFYDAQNIPPRQKTARE--LLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+ KI+D+ L+ A + +T + + W APE + + + S DV+SFG
Sbjct: 504 TQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECI----NYYKFSSKSDVWSFG 559
Query: 197 IIIQEVVLQGLR 208
+++ E G +
Sbjct: 560 VLMWEAFSYGQK 571
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 46/157 (29%)
Query: 203 VLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVR 262
++ L H N+ G + +P P +V EF G L L+ + W+ +L L+ D+
Sbjct: 76 IMSNLNHPNIVKLYGLMHNP--PRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIAL 133
Query: 263 GMRYL------------------------------------------HSVPHRLHELLWT 280
G+ Y+ HSV L W
Sbjct: 134 GIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLGNFQWM 193
Query: 281 APELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPF 317
APE + E ++ D YSF +I+ ++ PF
Sbjct: 194 APETIGAEEESY--TEKADTYSFAMILYTILTGEGPF 228
>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 636
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVID 138
LV E G L L Q+ D + L+ + GM+YL + +H +L +RN ++
Sbjct: 447 LVMEMAELGPLNKYLQQNRHVKDKNI-IELVHQVSMGMKYLEE-SNFVHRDLAARNVLLV 504
Query: 139 ARWVLKITDYALNSFYDAQNIPPRQKTARE--LLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+ KI+D+ L+ A + +T + + W APE + + + S DV+SFG
Sbjct: 505 TQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECI----NYYKFSSKSDVWSFG 560
Query: 197 IIIQEVVLQGLR 208
+++ E G +
Sbjct: 561 VLMWEAFSYGQK 572
>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7-
Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2-
Phenylcyclopropyl)urea
Length = 293
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 16/174 (9%)
Query: 45 LKSKSVDHLLQLQGLRHENL-----NPFIGFL---WDPTGPALVWEFCCRGSLEDVLVQD 96
LK+++ D L+ + L N+ NP+I + + LV E G L L Q+
Sbjct: 62 LKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQN 121
Query: 97 EIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDA 156
D + L+ + GM+YL + +H +L +RN ++ + KI+D+ L+ A
Sbjct: 122 RHVKDKNI-IELVHQVSMGMKYLEE-SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA 179
Query: 157 QNIPPRQKTARE--LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ +T + + W APE + + + S DV+SFG+++ E G +
Sbjct: 180 DENYYKAQTHGKWPVKWYAPECI----NYYKFSSKSDVWSFGVLMWEAFSYGQK 229
>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic
Domain With Pyrazolylbenzimidazole Inhibitor 416
pdb|3VF9|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic
Domain With Thienopyrazolylindole Inhibitor 027
pdb|3TUC|A Chain A, Crystal Structure Of Syk Kinase Domain With
1-Benzyl-N-(5-(6,7-
Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-2-Oxo-1,
2-Dihydropyridine-3- Carboxamide
pdb|3TUD|A Chain A, Crystal Structure Of Syk Kinase Domain With
N-(4-Methyl-3-(8-Methyl-7-
Oxo-2-(Phenylamino)-7,8-Dihydropyrido[2,
3-D]pyrimidin-6-Yl)phenyl)-3- (Trifluoromethyl)benzamide
Length = 299
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 16/174 (9%)
Query: 45 LKSKSVDHLLQLQGLRHENL-----NPFIGFL---WDPTGPALVWEFCCRGSLEDVLVQD 96
LK+++ D L+ + L N+ NP+I + + LV E G L L Q+
Sbjct: 62 LKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQN 121
Query: 97 EIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDA 156
D + L+ + GM+YL + +H +L +RN ++ + KI+D+ L+ A
Sbjct: 122 RHVKDKNI-IELVHQVSMGMKYLEE-SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA 179
Query: 157 QNIPPRQKTARE--LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ +T + + W APE + + + S DV+SFG+++ E G +
Sbjct: 180 DENYYKAQTHGKWPVKWYAPECI----NYYKFSSKSDVWSFGVLMWEAFSYGQK 229
>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2-
Phenylaminopyrimidines As Potent Inhibitors Of Spleen
Tyrosine Kinase (Syk)
Length = 291
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 16/174 (9%)
Query: 45 LKSKSVDHLLQLQGLRHENL-----NPFIGFL---WDPTGPALVWEFCCRGSLEDVLVQD 96
LK+++ D L+ + L N+ NP+I + + LV E G L L Q+
Sbjct: 60 LKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQN 119
Query: 97 EIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDA 156
D + L+ + GM+YL + +H +L +RN ++ + KI+D+ L+ A
Sbjct: 120 RHVKDKNI-IELVHQVSMGMKYLEE-SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA 177
Query: 157 QNIPPRQKTARE--LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ +T + + W APE + + + S DV+SFG+++ E G +
Sbjct: 178 DENYYKAQTHGKWPVKWYAPECI----NYYKFSSKSDVWSFGVLMWEAFSYGQK 227
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 3/161 (1%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRG 115
L H N+ + + ++ EFC G+++ V+++ E L + + +
Sbjct: 88 LASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDA 147
Query: 116 MRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPE 175
+ YLH +H +L + N + +K+ D+ + S + + I R W APE
Sbjct: 148 LNYLHD-NKIIHRDLKAGNILFTLDGDIKLADFGV-SAKNTRTIQRRDSFIGTPYWMAPE 205
Query: 176 LLRDEAHRLRG-SQPGDVYSFGIIIQEVVLQGLRHENLNPF 215
++ E + R DV+S GI + E+ H LNP
Sbjct: 206 VVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPM 246
>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The
Murine Receptor Tyrosine Kinase Tyro3 (Sky)
Length = 323
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 77 PALVWEFCCRGSLEDVLVQDEI-----KLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLT 131
P ++ F G L L+ I L + + D+ GM YL S + +H +L
Sbjct: 106 PMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSS-RNFIHRDLA 164
Query: 132 SRNCVIDARWVLKITDYALN-SFYDAQNIPPRQKTAREL--LWTAPELLRDEAHRLRGSQ 188
+RNC++ + + D+ L+ Y RQ A +L W A E L D + +
Sbjct: 165 ARNCMLAEDMTVCVADFGLSRKIYSGDYY--RQGCASKLPVKWLALESLADNLYTVH--- 219
Query: 189 PGDVYSFGIIIQEVVLQG 206
DV++FG+ + E++ +G
Sbjct: 220 -SDVWAFGVTMWEIMTRG 236
>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A Sulfonamidopyrazine Piperidine Inhibitor
pdb|4DFN|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
An Adamantylpyrazine Inhibitor
Length = 274
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 16/174 (9%)
Query: 45 LKSKSVDHLLQLQGLRHENL-----NPFIGFL---WDPTGPALVWEFCCRGSLEDVLVQD 96
LK+++ D L+ + L N+ NP+I + + LV E G L L Q+
Sbjct: 42 LKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQN 101
Query: 97 EIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDA 156
D + L+ + GM+YL + +H +L +RN ++ + KI+D+ L+ A
Sbjct: 102 RHVKDKNI-IELVHQVSMGMKYLEE-SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA 159
Query: 157 QNIPPRQKTARE--LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ +T + + W APE + + + S DV+SFG+++ E G +
Sbjct: 160 DENYYKAQTHGKWPVKWYAPECI----NYYKFSSKSDVWSFGVLMWEAFSYGQK 209
>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In
Complex With A Diaminopyrimidine Carboxamide Inhibitor
Length = 277
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 16/174 (9%)
Query: 45 LKSKSVDHLLQLQGLRHENL-----NPFIGFL---WDPTGPALVWEFCCRGSLEDVLVQD 96
LK+++ D L+ + L N+ NP+I + + LV E G L L Q+
Sbjct: 46 LKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQN 105
Query: 97 EIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDA 156
D + L+ + GM+YL + +H +L +RN ++ + KI+D+ L+ A
Sbjct: 106 RHVKDKNI-IELVHQVSMGMKYLEE-SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA 163
Query: 157 QNIPPRQKTARE--LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ +T + + W APE + + + S DV+SFG+++ E G +
Sbjct: 164 DENYYKAQTHGKWPVKWYAPECI----NYYKFSSKSDVWSFGVLMWEAFSYGQK 213
>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836
Length = 273
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 16/174 (9%)
Query: 45 LKSKSVDHLLQLQGLRHENL-----NPFIGFL---WDPTGPALVWEFCCRGSLEDVLVQD 96
LK+++ D L+ + L N+ NP+I + + LV E G L L Q+
Sbjct: 40 LKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQN 99
Query: 97 EIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDA 156
D + L+ + GM+YL + +H +L +RN ++ + KI+D+ L+ A
Sbjct: 100 RHVKDKNI-IELVHQVSMGMKYLEE-SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA 157
Query: 157 QNIPPRQKTARE--LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ +T + + W APE + + + S DV+SFG+++ E G +
Sbjct: 158 DENYYKAQTHGKWPVKWYAPECI----NYYKFSSKSDVWSFGVLMWEAFSYGQK 207
>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain
pdb|1XBB|A Chain A, Crystal Structure Of The Syk Tyrosine Kinase Domain With
Gleevec
pdb|1XBC|A Chain A, Crystal Structure Of The Syk Tyrosine Kinase Domain With
Staurosporin
pdb|3FQE|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
Ym193306
pdb|3FQH|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A 2-Substituted 7-Azaindole
pdb|3FQH|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A 2-Substituted 7-Azaindole
pdb|3FQS|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
R406
pdb|4FL1|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
pdb|4FYN|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
3-(8-{4-
[ethyl-(2-hydroxy-ethyl)-amino]-phenylamino}-imidazo[1,
2-a]pyrazin-5- Yl)-phenol
pdb|4FYO|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
N-{(s)-1-
[7-(3,4-dimethoxy-phenylamino)-thiazolo[5,
4-d]pyrimidin-5-yl]- Pyrrolidin-3-yl}-terephthalamic
Acid
pdb|4FZ6|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
[6-((s)-2-
Methyl-pyrrolidin-1-yl)-pyridin-2-yl]-(6-phenyl-
imidazo[1,2- B]pyridazin-8-yl)-amine
Length = 291
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 16/174 (9%)
Query: 45 LKSKSVDHLLQLQGLRHENL-----NPFIGFL---WDPTGPALVWEFCCRGSLEDVLVQD 96
LK+++ D L+ + L N+ NP+I + + LV E G L L Q+
Sbjct: 52 LKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQN 111
Query: 97 EIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDA 156
D + L+ + GM+YL + +H +L +RN ++ + KI+D+ L+ A
Sbjct: 112 RHVKDKNI-IELVHQVSMGMKYLEE-SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA 169
Query: 157 QNIPPRQKTARE--LLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ +T + + W APE + + + S DV+SFG+++ E G +
Sbjct: 170 DENYYKAQTHGKWPVKWYAPECI----NYYKFSSKSDVWSFGVLMWEAFSYGQK 219
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 3/161 (1%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRG 115
L H N+ + + ++ EFC G+++ V+++ E L + + +
Sbjct: 88 LASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDA 147
Query: 116 MRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPE 175
+ YLH +H +L + N + +K+ D+ + S + + I R W APE
Sbjct: 148 LNYLHD-NKIIHRDLKAGNILFTLDGDIKLADFGV-SAKNTRXIQRRDSFIGTPYWMAPE 205
Query: 176 LLRDEAHRLRG-SQPGDVYSFGIIIQEVVLQGLRHENLNPF 215
++ E + R DV+S GI + E+ H LNP
Sbjct: 206 VVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPM 246
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 3/161 (1%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRG 115
L H N+ + + ++ EFC G+++ V+++ E L + + +
Sbjct: 88 LASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDA 147
Query: 116 MRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPE 175
+ YLH +H +L + N + +K+ D+ + S + + I R W APE
Sbjct: 148 LNYLHD-NKIIHRDLKAGNILFTLDGDIKLADFGV-SAKNTRXIQRRDXFIGTPYWMAPE 205
Query: 176 LLRDEAHRLRG-SQPGDVYSFGIIIQEVVLQGLRHENLNPF 215
++ E + R DV+S GI + E+ H LNP
Sbjct: 206 VVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPM 246
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 9/159 (5%)
Query: 50 VDHLLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLL 109
+D L + + H +L +G PT LV + G L + + + + + L+
Sbjct: 88 MDEALIMASMDHPHLVRLLGVCLSPT-IQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWC 146
Query: 110 TDLVRGMRYLHSVPHRL-HGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR- 167
+ +GM YL RL H +L +RN ++ + +KITD+ L + +
Sbjct: 147 VQIAKGMMYLEE--RRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKM 204
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ W A E + H + + DV+S+G+ I E++ G
Sbjct: 205 PIKWMALECI----HYRKFTHQSDVWSYGVTIWELMTFG 239
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 9/159 (5%)
Query: 50 VDHLLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLL 109
+D L + + H +L +G PT LV + G L + + + + + L+
Sbjct: 65 MDEALIMASMDHPHLVRLLGVCLSPT-IQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWC 123
Query: 110 TDLVRGMRYLHSVPHRL-HGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR- 167
+ +GM YL RL H +L +RN ++ + +KITD+ L + +
Sbjct: 124 VQIAKGMMYLEE--RRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKM 181
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ W A E + H + + DV+S+G+ I E++ G
Sbjct: 182 PIKWMALECI----HYRKFTHQSDVWSYGVTIWELMTFG 216
>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a
pdb|4H1M|A Chain A, Crystal Structure Of Pyk2 With The Indole 10c
Length = 293
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
Query: 42 TIELKSKSVDHLLQLQGLRHENLNPFIGFLWD-PTGPALVWEFCCRGSLEDVLVQDEIKL 100
T++ K K + + ++ L H ++ IG + + PT ++ E G L L +++ L
Sbjct: 65 TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPTW--IIMELYPYGELGHYLERNKNSL 122
Query: 101 DWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIP 160
+ + + M YL S+ + +H ++ RN ++ + +K+ D+ L+ + + ++
Sbjct: 123 KVLTLVLYSLQICKAMAYLESI-NCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYY 181
Query: 161 PRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
T + W +PE + + R + DV+ F + + E++ G
Sbjct: 182 KASVTRLPIKWMSPESI----NFRRFTTASDVWMFAVCMWEILSFG 223
>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine
Kinase
pdb|3FZP|A Chain A, Crystal Structure Of Pyk2 Complexed With Atpgs
pdb|3FZR|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-431396
pdb|3FZS|A Chain A, Crystal Structure Of Pyk2 Complexed With Birb796
pdb|3FZT|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-4618433
pdb|3H3C|A Chain A, Crystal Structure Of Pyk2 In Complex With Sulfoximine-
Substituted Trifluoromethylpyrimidine Analog
pdb|3ET7|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-2318841
Length = 277
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
Query: 42 TIELKSKSVDHLLQLQGLRHENLNPFIGFLWD-PTGPALVWEFCCRGSLEDVLVQDEIKL 100
T++ K K + + ++ L H ++ IG + + PT ++ E G L L +++ L
Sbjct: 49 TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPTW--IIMELYPYGELGHYLERNKNSL 106
Query: 101 DWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIP 160
+ + + M YL S+ + +H ++ RN ++ + +K+ D+ L+ + + ++
Sbjct: 107 KVLTLVLYSLQICKAMAYLESI-NCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYY 165
Query: 161 PRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
T + W +PE + + R + DV+ F + + E++ G
Sbjct: 166 KASVTRLPIKWMSPESI----NFRRFTTASDVWMFAVCMWEILSFG 207
>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine
Kinase 2 Beta (ptk2b)
Length = 281
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
Query: 42 TIELKSKSVDHLLQLQGLRHENLNPFIGFLWD-PTGPALVWEFCCRGSLEDVLVQDEIKL 100
T++ K K + + ++ L H ++ IG + + PT ++ E G L L +++ L
Sbjct: 53 TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPTW--IIMELYPYGELGHYLERNKNSL 110
Query: 101 DWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIP 160
+ + + M YL S+ + +H ++ RN ++ + +K+ D+ L+ + + ++
Sbjct: 111 KVLTLVLYSLQICKAMAYLESI-NCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYY 169
Query: 161 PRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
T + W +PE + + R + DV+ F + + E++ G
Sbjct: 170 KASVTRLPIKWMSPESI----NFRRFTTASDVWMFAVCMWEILSFG 211
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 17/135 (12%)
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARW 141
E+C G+L D++ + + L ++ + Y+HS +H +L N ID
Sbjct: 95 EYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHS-QGIIHRDLKPMNIFIDESR 153
Query: 142 VLKITDYALNSFY---------DAQNIPPRQKTARE----LLWTAPELLRDEAHRLRGSQ 188
+KI D+ L D+QN+P ++ A E+L H ++
Sbjct: 154 NVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHY---NE 210
Query: 189 PGDVYSFGIIIQEVV 203
D+YS GII E++
Sbjct: 211 KIDMYSLGIIFFEMI 225
>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3PP0|B Chain B, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3RCD|A Chain A, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|B Chain B, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|C Chain C, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|D Chain D, Her2 Kinase Domain Complexed With Tak-285
Length = 338
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 8/173 (4%)
Query: 38 LHGNTIELKSKSV-DHLLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
L NT +K + D + G+ ++ +G T LV + G L D + ++
Sbjct: 54 LRENTSPKANKEILDEAYVMAGVGSPYVSRLLGICLTST-VQLVTQLMPYGCLLDHVREN 112
Query: 97 EIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDA 156
+L L+ + +GM YL V +H +L +RN ++ + +KITD+ L D
Sbjct: 113 RGRLGSQDLLNWCMQIAKGMSYLEDV-RLVHRDLAARNVLVKSPNHVKITDFGLARLLDI 171
Query: 157 QNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLR 208
+ + W A E + R R + DV+S+G+ + E++ G +
Sbjct: 172 DETEYHADGGKVPIKWMALESI----LRRRFTHQSDVWSYGVTVWELMTFGAK 220
>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4H3P|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4H3P|D Chain D, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 30/186 (16%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LL 109
L RHEN+ + PT + + ++D++ D KL T LS L
Sbjct: 77 LLAFRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFL 132
Query: 110 TDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--R 167
++RG++Y+HS + LH +L N +++ LKI D+ L D P T
Sbjct: 133 YQILRGLKYIHSA-NVLHRDLKPSNLLLNTTCDLKICDFGLARVAD----PDHDHTGFLT 187
Query: 168 ELLWT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIG 217
E + T APE++ + + D++S G I+ E+ + G + + LN +G
Sbjct: 188 EYVATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILG 244
Query: 218 FLWDPT 223
L P+
Sbjct: 245 ILGSPS 250
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 97 LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 154
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 155 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 210
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 211 VTVWELMTFGSK 222
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 94 LIMQLMPFGXLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 151
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 152 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 207
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 208 VTVWELMTFGSK 219
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 95 LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 152
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 153 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 208
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 209 VTVWELMTFGSK 220
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 93 LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 150
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 151 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 206
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 207 VTVWELMTFGSK 218
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 94 LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 151
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 152 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 207
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 208 VTVWELMTFGSK 219
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 96 LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 153
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 154 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 209
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 210 VTVWELMTFGSK 221
>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN The Apo Form
pdb|3UG2|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Gefitinib
pdb|3VJN|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Amppnp
Length = 334
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 100 LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 157
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 158 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 213
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 214 VTVWELMTFGSK 225
>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 30/186 (16%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LL 109
L RHEN+ + PT + + ++D++ D KL T LS L
Sbjct: 77 LLAFRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFL 132
Query: 110 TDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--R 167
++RG++Y+HS + LH +L N +++ LKI D+ L D P T
Sbjct: 133 YQILRGLKYIHSA-NVLHRDLKPSNLLLNTTSDLKICDFGLARVAD----PDHDHTGFLT 187
Query: 168 ELLWT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIG 217
E + T APE++ + + D++S G I+ E+ + G + + LN +G
Sbjct: 188 EYVATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILG 244
Query: 218 FLWDPT 223
L P+
Sbjct: 245 ILGSPS 250
>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 11 (p38 Beta) In Complex With Nilotinib
Length = 348
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 27/214 (12%)
Query: 2 LQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRH 61
LQG+R VG+ + + D + R V +K + ++ ++ L L+ L+H
Sbjct: 22 LQGLRPVGSGAYGSVCSAYDARLRQK---VAVKKLSRPFQSLIHARRTYRELRLLKHLKH 78
Query: 62 ENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTD---------L 112
EN+ IG L D PA E L L+ + L+ + L+D L
Sbjct: 79 ENV---IGLL-DVFTPATSIEDFSEVYLVTTLMGAD--LNNIVKCQALSDEHVQFLVYQL 132
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWT 172
+RG++Y+HS +H +L N ++ L+I D+ L D + +
Sbjct: 133 LRGLKYIHSA-GIIHRDLKPSNVAVNEDCELRILDFGLARQADEEMT----GYVATRWYR 187
Query: 173 APELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
APE++ + H +Q D++S G I+ E +LQG
Sbjct: 188 APEIMLNWMHY---NQTVDIWSVGCIMAE-LLQG 217
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 93 LITQLMPFGXLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 150
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 151 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 206
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 207 VTVWELMTFGSK 218
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 118 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 175
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 176 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 231
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 232 VTVWELMTFGSK 243
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 96 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 153
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 154 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 209
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 210 VTVWELMTFGSK 221
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 150
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 151 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 206
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 207 VTVWELMTFGSK 218
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 96 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 153
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 154 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 209
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 210 VTVWELMTFGSK 221
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 99 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 156
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 157 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 212
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 213 VTVWELMTFGSK 224
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 96 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 153
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 154 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 209
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 210 VTVWELMTFGSK 221
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 95 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 152
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 153 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 208
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 209 VTVWELMTFGSK 220
>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Amp-Pnp
pdb|2ITO|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Iressa
pdb|2ITP|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Aee788
pdb|2ITQ|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Afn941
Length = 327
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 150
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 151 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 206
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 207 VTVWELMTFGSK 218
>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
pdb|3GC9|B Chain B, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
Length = 370
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 25/213 (11%)
Query: 2 LQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRH 61
LQG+R VG+ + + D + R V +K + ++ ++ L L+ L+H
Sbjct: 30 LQGLRPVGSGAYGSVCSAYDARLRQK---VAVKKLSRPFQSLIHARRTYRELRLLKHLKH 86
Query: 62 ENLNPFIGFLWDPTGPALVWE--------FCCRGSLEDVLVQDEIKLDWTFRLSLLTDLV 113
EN+ IG L D PA E G+ + +V+ + D + L+ L+
Sbjct: 87 ENV---IGLL-DVFTPATSIEDFSEVYLVTTLMGADLNNIVKSQALSDEHVQF-LVYQLL 141
Query: 114 RGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTA 173
RG++Y+HS +H +L N ++ L+I D+ L D + + A
Sbjct: 142 RGLKYIHSA-GIIHRDLKPSNVAVNEDSELRILDFGLARQADEEMT----GYVATRWYRA 196
Query: 174 PELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
PE++ + H +Q D++S G I+ E +LQG
Sbjct: 197 PEIMLNWMHY---NQTVDIWSVGCIMAE-LLQG 225
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 100 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 157
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 158 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 213
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 214 VTVWELMTFGSK 225
>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
pdb|3GC8|B Chain B, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
Length = 370
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 27/214 (12%)
Query: 2 LQGVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRH 61
LQG+R VG+ + + D + R V +K + ++ ++ L L+ L+H
Sbjct: 30 LQGLRPVGSGAYGSVCSAYDARLRQK---VAVKKLSRPFQSLIHARRTYRELRLLKHLKH 86
Query: 62 ENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTD---------L 112
EN+ IG L D PA E L L+ + L+ + L+D L
Sbjct: 87 ENV---IGLL-DVFTPATSIEDFSEVYLVTTLMGAD--LNNIVKCQALSDEHVQFLVYQL 140
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWT 172
+RG++Y+HS +H +L N ++ L+I D+ L D + +
Sbjct: 141 LRGLKYIHSA-GIIHRDLKPSNVAVNEDSELRILDFGLARQADEEMT----GYVATRWYR 195
Query: 173 APELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
APE++ + H +Q D++S G I+ E +LQG
Sbjct: 196 APEIMLNWMHY---NQTVDIWSVGCIMAE-LLQG 225
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 103 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 160
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 161 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 216
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 217 VTVWELMTFGSK 228
>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s)
Length = 334
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 100 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 157
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 158 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 213
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 214 VTVWELMTFGSK 225
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 87 GSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVIDARWVLKI 145
G L D + + + + + L+ + +GM YL RL H +L +RN ++ +KI
Sbjct: 101 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLVKTPQHVKI 158
Query: 146 TDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
TD+ L A+ + + + W A E + HR+ Q DV+S+G+ + E++
Sbjct: 159 TDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYGVTVWELMT 214
Query: 205 QGLR 208
G +
Sbjct: 215 FGSK 218
>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase
Erk1
pdb|2ZOQ|B Chain B, Structural Dissection Of Human Mitogen-Activated Kinase
Erk1
Length = 382
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ L T A+ + ++D++ D KL + +LS L +
Sbjct: 98 FRHENVIGIRDILRASTLEAMRDVYI----VQDLMETDLYKLLKSQQLSNDHICYFLYQI 153
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +I+ LKI D+ L D P T E +
Sbjct: 154 LRGLKYIHSA-NVLHRDLKPSNLLINTTCDLKICDFGLARIAD----PEHDHTGFLTEXV 208
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 209 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 265
Query: 221 DPT 223
P+
Sbjct: 266 SPS 268
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 87 GSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVIDARWVLKI 145
G L D + + + + + L+ + +GM YL RL H +L +RN ++ +KI
Sbjct: 95 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLVKTPQHVKI 152
Query: 146 TDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
TD+ L A+ + + + W A E + HR+ Q DV+S+G+ + E++
Sbjct: 153 TDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYGVTVWELMT 208
Query: 205 QGLR 208
G +
Sbjct: 209 FGSK 212
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 127 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 184
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 185 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 240
Query: 197 IIIQEVVLQG 206
+ + E++ G
Sbjct: 241 VTVWELMTFG 250
>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With
N,n-dimethyl-4-(4-
Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide
pdb|2OJI|A Chain A, Crystal Structure Of Erk2 In Complex With
N-Benzyl-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|2OJJ|A Chain A, Crystal Structure Of Erk2 In Complex With (S)-N-(1-(3-
Chloro-4-Fluorophenyl)-2-Hydroxyethyl)-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|3I5Z|A Chain A, Crystal Structure Of Erk2 Bound To
(S)-N-(2-Hydroxy-1-Phenylethyl)-4-
(5-Methyl-2-(Phenylamino)pyrimidin-4-Yl)-1h-Pyrrole-2-
Carboxamide
pdb|3I60|A Chain A, Crystal Structure Of Erk2 Bound To
(s)-4-(2-(2-chlorophenylamino)-5-
Methylpyrimidin-4-yl)-n-(2-hydroxy-1-phenylethyl)-1h-
pyrrole-2- Carboxamide
Length = 380
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL T LS L +
Sbjct: 98 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFLYQI 153
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 154 LRGLKYIHSA-NVLHRDLKPSNLLLNTTCDLKICDFGLARVAD----PDHDHTGFLTEYV 208
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 209 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 265
Query: 221 DPT 223
P+
Sbjct: 266 SPS 268
>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 365
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL T LS L +
Sbjct: 83 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFLYQI 138
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 139 LRGLKYIHSA-NVLHRDLKPSNLLLNTTCDLKICDFGLARVAD----PDHDHTGFLTEYV 193
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 194 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 250
Query: 221 DPT 223
P+
Sbjct: 251 SPS 253
>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4FMQ|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL T LS L +
Sbjct: 80 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFLYQI 135
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 136 LRGLKYIHSA-NVLHRDLKPSNLLLNTTCDLKICDFGLARVAD----PDHDHTGFLTEYV 190
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 191 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 247
Query: 221 DPT 223
P+
Sbjct: 248 SPS 250
>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In
Complex With
(4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin
2-Yl]amino}phenyl)acetic Acid
Length = 366
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL T LS L +
Sbjct: 84 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFLYQI 139
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 140 LRGLKYIHSA-NVLHRDLKPSNLLLNTTCDLKICDFGLARVAD----PDHDHTGFLTEYV 194
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 195 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 251
Query: 221 DPT 223
P+
Sbjct: 252 SPS 254
>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently
Bound
pdb|3C9W|B Chain B, Crystal Structure Of Erk-2 With Hypothemycin Covalently
Bound
Length = 357
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL T LS L +
Sbjct: 75 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFLYQI 130
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 131 LRGLKYIHSA-NVLHRDLKPSNLLLNTTCDLKICDFGLARVAD----PDHDHTGFLTEYV 185
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 186 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 242
Query: 221 DPT 223
P+
Sbjct: 243 SPS 245
>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived
From Mkp3
pdb|2FYS|A Chain A, Crystal Structure Of Erk2 Complex With Kim Peptide Derived
From Mkp3
pdb|1ERK|A Chain A, Structure Of Signal-Regulated Kinase
pdb|3ERK|A Chain A, The Complex Structure Of The Map Kinase Erk2SB220025
pdb|4ERK|A Chain A, The Complex Structure Of The Map Kinase Erk2OLOMOUCINE
pdb|3QYI|A Chain A, Map Kinase Erk2 Complexed With
1,1-Dioxo-2,3-Dihydrothiophen-3-Yl Benzenesulfonate
Length = 364
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL T LS L +
Sbjct: 82 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFLYQI 137
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 138 LRGLKYIHSA-NVLHRDLKPSNLLLNTTCDLKICDFGLARVAD----PDHDHTGFLTEYV 192
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 193 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 249
Query: 221 DPT 223
P+
Sbjct: 250 SPS 252
>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A
Pyrazolopyridazine Derivative
pdb|3W55|A Chain A, The Structure Of Erk2 In Complex With Fr148083
Length = 368
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL T LS L +
Sbjct: 86 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFLYQI 141
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 142 LRGLKYIHSA-NVLHRDLKPSNLLLNTTCDLKICDFGLARVAD----PDHDHTGFLTEYV 196
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 197 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 253
Query: 221 DPT 223
P+
Sbjct: 254 SPS 256
>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule
Inhibitor
Length = 368
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL T LS L +
Sbjct: 78 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFLYQI 133
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 134 LRGLKYIHSA-NVLHRDLKPSNLLLNTTCDLKICDFGLARVAD----PDHDHTGFLTEYV 188
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 189 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 245
Query: 221 DPT 223
P+
Sbjct: 246 SPS 248
>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine
Mutation At Position 52
Length = 364
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL T LS L +
Sbjct: 82 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFLYQI 137
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 138 LRGLKYIHSA-NVLHRDLKPSNLLLNTTCDLKICDFGLARVAD----PDHDHTGFLTEYV 192
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 193 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 249
Query: 221 DPT 223
P+
Sbjct: 250 SPS 252
>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX
Length = 358
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL T LS L +
Sbjct: 76 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFLYQI 131
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 132 LRGLKYIHSA-NVLHRDLKPSNLLLNTTCDLKICDFGLARVAD----PDHDHTGFLTEYV 186
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 187 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 243
Query: 221 DPT 223
P+
Sbjct: 244 SPS 246
>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|C Chain C, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 364
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL T LS L +
Sbjct: 82 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFLYQI 137
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 138 LRGLKYIHSA-NVLHRDLKPSNLLLNTTCDLKICDFGLARVAD----PDHDHTGFLXEXV 192
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 193 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 249
Query: 221 DPT 223
P+
Sbjct: 250 SPS 252
>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor
pdb|3QYZ|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor
pdb|4GT3|A Chain A, Atp-Bound Form Of The Erk2 Kinase
pdb|4GVA|A Chain A, Adp-Bound Form Of The Erk2 Kinase
Length = 364
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL T LS L +
Sbjct: 82 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFLYQI 137
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 138 LRGLKYIHSA-NVLHRDLKPSNLLLNTTXDLKICDFGLARVAD----PDHDHTGFLTEYV 192
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 193 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 249
Query: 221 DPT 223
P+
Sbjct: 250 SPS 252
>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2
Length = 365
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL T LS L +
Sbjct: 83 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFLYQI 138
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 139 LRGLKYIHSA-NVLHRDLKPSNLLLNTTCDLKICDFGLARVAD----PDHDHTGFLXEXV 193
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 194 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 250
Query: 221 DPT 223
P+
Sbjct: 251 SPS 253
>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57
Length = 360
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL T LS L +
Sbjct: 78 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFLYQI 133
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 134 LRGLKYIHSA-NVLHRDLKPSNLLLNTTCDLKICDFGLARVAD----PDHDHTGFLTEYV 188
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 189 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 245
Query: 221 DPT 223
P+
Sbjct: 246 SPS 248
>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol
pdb|4FUY|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek2
pdb|4FV0|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek3
Length = 360
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL T LS L +
Sbjct: 78 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFLYQI 133
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 134 LRGLKYIHSA-NVLHRDLKPSNLLLNTTXDLKIXDFGLARVAD----PDHDHTGFLTEYV 188
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 189 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 245
Query: 221 DPT 223
P+
Sbjct: 246 SPS 248
>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75
pdb|4FV1|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek4
pdb|4FV2|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek5
pdb|4FV3|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek6
pdb|4FV4|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek7
pdb|4FV5|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek9
pdb|4FV8|A Chain A, Crystal Structure Of The Erk2 Complexed With E63
pdb|4FV9|A Chain A, Crystal Structure Of The Erk2 Complexed With E71
pdb|4G6N|A Chain A, Crystal Structure Of The Erk2
Length = 360
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL T LS L +
Sbjct: 78 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFLYQI 133
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 134 LRGLKYIHSA-NVLHRDLKPSNLLLNTTXDLKICDFGLARVAD----PDHDHTGFLTEYV 188
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 189 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 245
Query: 221 DPT 223
P+
Sbjct: 246 SPS 248
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 66/146 (45%), Gaps = 6/146 (4%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L H+N+ I + LV E+ +L + ++ L ++ ++ G+++
Sbjct: 68 LSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSE-YIESHGPLSVDTAINFTNQILDGIKH 126
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLR 178
H + +H ++ +N +ID+ LKI D+ + ++ + + +PE +
Sbjct: 127 AHDM-RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAK 185
Query: 179 DEAHRLRGSQPGDVYSFGIIIQEVVL 204
EA + D+YS GI++ E+++
Sbjct: 186 GEA----TDECTDIYSIGIVLYEMLV 207
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 267 LHSVPHRLHELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCMLSLTPEG 326
L H L + + +PE + EA + D+YS GI++ E++V PF T
Sbjct: 166 LTQTNHVLGTVQYFSPEQAKGEA----TDECTDIYSIGIVLYEMLVGEPPFN--GETAVS 219
Query: 327 KLVRHTPQAVP 337
++H +VP
Sbjct: 220 IAIKHIQDSVP 230
>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2
Length = 364
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL T LS L +
Sbjct: 82 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFLYQI 137
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 138 LRGLKYIHSA-NVLHRDLKPSNLLLNTTXDLKICDFGLARVAD----PDHDHTGFLTEYV 192
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 193 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 249
Query: 221 DPT 223
P+
Sbjct: 250 SPS 252
>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94
pdb|4G6O|A Chain A, Crystal Structure Of The Erk2
Length = 360
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL T LS L +
Sbjct: 78 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFLYQI 133
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 134 LRGLKYIHSA-NVLHRDLKPSNLLLNTTXDLKICDFGLARVAD----PDHDHTGFLTEYV 188
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 189 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 245
Query: 221 DPT 223
P+
Sbjct: 246 SPS 248
>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With
Nms-P937
pdb|4A4L|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
5-(2-Amino-Pyrimidin-4-Yl)-1h-Pyrrole Inhibitor
pdb|4A4O|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
2-
(2-Amino-Pyrimidin-4-Yl)-1,5,6,
7-Tetrahydro-Pyrrolopyridin- 4-One Inhibitor
Length = 311
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 25/198 (12%)
Query: 9 GADSSQYDVNVVDRKARYNGDLVQ----MKPVPLHGNTIELKSKSVDHLLQLQGLRHENL 64
G + ++++ D K + G +V +KP ++E+ + L H+++
Sbjct: 28 GGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIH--------RSLAHQHV 79
Query: 65 NPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPH 124
F GF D +V E C R SL ++ + + + R L +V G +YLH
Sbjct: 80 VGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARY-YLRQIVLGCQYLHR-NR 137
Query: 125 RLHGNLTSRNCVIDARWVLKITDYALNSF--YDAQNIPPRQKT-ARELLWTAPELLRDEA 181
+H +L N ++ +KI D+ L + YD + R+KT + APE+L +
Sbjct: 138 VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE----RKKTLCGTPNYIAPEVLSKKG 193
Query: 182 HRLRGSQPGDVYSFGIII 199
H DV+S G I+
Sbjct: 194 HSFE----VDVWSIGCIM 207
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + GM YL RL H +L +RN ++
Sbjct: 90 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAEGMNYLED--RRLVHRDLAARNVLV 147
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ L A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 148 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 203
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 204 VTVWELMTFGSK 215
>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Apo)
Length = 271
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 39/156 (25%)
Query: 204 LQGLRHENLNPFIGFLWDPTGP--ALVWEFCCRGSLEDVLVQ-DEIKLDWTFRLSLLTDL 260
L+ H N+ P +G P P L+ + GSL +VL + +D + + D
Sbjct: 61 LRIFSHPNVLPVLGACQSPPAPHPTLITHWXPYGSLYNVLHEGTNFVVDQSQAVKFALDX 120
Query: 261 VRGMRYLHSV-----------------------------------PHRLHELLWTAPELL 285
RG +LH++ P R + W APE L
Sbjct: 121 ARGXAFLHTLEPLIPRHALNSRSVXIDEDXTARISXADVKFSFQSPGRXYAPAWVAPEAL 180
Query: 286 RDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCMLS 321
+ + + D +SF +++ E+V R PF LS
Sbjct: 181 QKKPEDT-NRRSADXWSFAVLLWELVTREVPFADLS 215
>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|B Chain B, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 315
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 25/198 (12%)
Query: 9 GADSSQYDVNVVDRKARYNGDLVQ----MKPVPLHGNTIELKSKSVDHLLQLQGLRHENL 64
G + ++++ D K + G +V +KP ++E+ + L H+++
Sbjct: 32 GGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIH--------RSLAHQHV 83
Query: 65 NPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPH 124
F GF D +V E C R SL ++ + + + R L +V G +YLH
Sbjct: 84 VGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARY-YLRQIVLGCQYLHRN-R 141
Query: 125 RLHGNLTSRNCVIDARWVLKITDYALNSF--YDAQNIPPRQKT-ARELLWTAPELLRDEA 181
+H +L N ++ +KI D+ L + YD + R+KT + APE+L +
Sbjct: 142 VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE----RKKTLCGTPNYIAPEVLSKKG 197
Query: 182 HRLRGSQPGDVYSFGIII 199
H DV+S G I+
Sbjct: 198 HSFE----VDVWSIGCIM 211
>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 311
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 25/198 (12%)
Query: 9 GADSSQYDVNVVDRKARYNGDLVQ----MKPVPLHGNTIELKSKSVDHLLQLQGLRHENL 64
G + ++++ D K + G +V +KP ++E+ + L H+++
Sbjct: 28 GGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIH--------RSLAHQHV 79
Query: 65 NPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPH 124
F GF D +V E C R SL ++ + + + R L +V G +YLH
Sbjct: 80 VGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARY-YLRQIVLGCQYLHR-NR 137
Query: 125 RLHGNLTSRNCVIDARWVLKITDYALNSF--YDAQNIPPRQKT-ARELLWTAPELLRDEA 181
+H +L N ++ +KI D+ L + YD + R+KT + APE+L +
Sbjct: 138 VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE----RKKTLCGTPNYIAPEVLSKKG 193
Query: 182 HRLRGSQPGDVYSFGIII 199
H DV+S G I+
Sbjct: 194 HSFE----VDVWSIGCIM 207
>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e)
Length = 358
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 30/182 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL T LS L +
Sbjct: 76 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKTQHLSNDHICYFLYQI 131
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 132 LRGLKYIHSA-NVLHRDLKPSNLLLNTTCDLKICDFGLARVAD----PDHDHTGFLTEYV 186
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 187 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 243
Query: 221 DP 222
P
Sbjct: 244 SP 245
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 40 GNTIELKSKSV--DHLLQLQGLR---HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLV 94
IE KS+ D++++++ L H + +G + ++ EFC G+++ +++
Sbjct: 41 AKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIML 100
Query: 95 QDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFY 154
+ + L + ++ + +LHS +H +L + N ++ +++ D+ ++
Sbjct: 101 ELDRGLTEPQIQVVCRQMLEALNFLHS-KRIIHRDLKAGNVLMTLEGDIRLADFGVS--- 156
Query: 155 DAQNIPPRQKTAREL---LWTAPELLRDEAHR-LRGSQPGDVYSFGIIIQEVVLQGLRHE 210
A+N+ QK + W APE++ E + D++S GI + E+ H
Sbjct: 157 -AKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHH 215
Query: 211 NLNPF 215
LNP
Sbjct: 216 ELNPM 220
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 40 GNTIELKSKSV--DHLLQLQGLR---HENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLV 94
IE KS+ D++++++ L H + +G + ++ EFC G+++ +++
Sbjct: 49 AKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIML 108
Query: 95 QDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFY 154
+ + L + ++ + +LHS +H +L + N ++ +++ D+ ++
Sbjct: 109 ELDRGLTEPQIQVVCRQMLEALNFLHS-KRIIHRDLKAGNVLMTLEGDIRLADFGVS--- 164
Query: 155 DAQNIPPRQKTAREL---LWTAPELLRDEAHR-LRGSQPGDVYSFGIIIQEVVLQGLRHE 210
A+N+ QK + W APE++ E + D++S GI + E+ H
Sbjct: 165 -AKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHH 223
Query: 211 NLNPF 215
LNP
Sbjct: 224 ELNPM 228
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 33/188 (17%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLV-- 94
+ +L S S+ L + ++ L H N+ + LV E+ G + D LV
Sbjct: 48 DKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAH 107
Query: 95 --QDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
E + FR +V ++Y H +H +L + N ++DA +KI D+ ++
Sbjct: 108 GRMKEKEARAKFR-----QIVSAVQYCHQ-KFIVHRDLKAENLLLDADMNIKIADFGFSN 161
Query: 153 FYDAQN-------IPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQ 205
+ N PP + APEL + + G + DV+S G+I+ +V
Sbjct: 162 EFTFGNKLDAFCGAPP---------YAAPELF--QGKKYDGPEV-DVWSLGVILYTLVSG 209
Query: 206 GLRHENLN 213
L + N
Sbjct: 210 SLPFDGQN 217
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 22/146 (15%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHS--------VPHRLHGNL 130
LV E+ GSL L DW L + RG+ YLH+ P H +L
Sbjct: 89 LVMEYYPNGSLXKYLSLH--TSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDL 146
Query: 131 TSRNCVIDARWVLKITDYALNSFYDAQNI--PPRQKTAR-----ELLWTAPELLRDEAHR 183
SRN ++ I+D+ L+ + P + A + + APE+L + A
Sbjct: 147 NSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVL-EGAVN 205
Query: 184 LRGSQPG----DVYSFGIIIQEVVLQ 205
LR + D+Y+ G+I E+ ++
Sbjct: 206 LRDXESALKQVDMYALGLIYWEIFMR 231
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 95 LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 152
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 153 KTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 208
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 209 VTVWELMTFGSK 220
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 95 LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 152
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 153 KTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 208
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 209 VTVWELMTFGSK 220
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 33/188 (17%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLV-- 94
+ +L S S+ L + ++ L H N+ + LV E+ G + D LV
Sbjct: 48 DKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAH 107
Query: 95 --QDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
E + FR +V ++Y H +H +L + N ++DA +KI D+ ++
Sbjct: 108 GRMKEKEARAKFR-----QIVSAVQYCHQ-KFIVHRDLKAENLLLDADMNIKIADFGFSN 161
Query: 153 FYDAQN-------IPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQ 205
+ N PP + APEL + + G + DV+S G+I+ +V
Sbjct: 162 EFTFGNKLDEFCGSPP---------YAAPELF--QGKKYDGPEV-DVWSLGVILYTLVSG 209
Query: 206 GLRHENLN 213
L + N
Sbjct: 210 SLPFDGQN 217
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 33/188 (17%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLV-- 94
+ +L S S+ L + ++ L H N+ + LV E+ G + D LV
Sbjct: 48 DKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAH 107
Query: 95 --QDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
E + FR +V ++Y H +H +L + N ++DA +KI D+ ++
Sbjct: 108 GRMKEKEARAKFR-----QIVSAVQYCHQ-KFIVHRDLKAENLLLDADMNIKIADFGFSN 161
Query: 153 FYDAQN-------IPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQ 205
+ N PP + APEL + + G + DV+S G+I+ +V
Sbjct: 162 EFTFGNKLDTFCGSPP---------YAAPELF--QGKKYDGPEV-DVWSLGVILYTLVSG 209
Query: 206 GLRHENLN 213
L + N
Sbjct: 210 SLPFDGQN 217
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 33/188 (17%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLV-- 94
+ +L S S+ L + ++ L H N+ + LV E+ G + D LV
Sbjct: 48 DKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAH 107
Query: 95 --QDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
E + FR +V ++Y H +H +L + N ++DA +KI D+ ++
Sbjct: 108 GRMKEKEARAKFR-----QIVSAVQYCHQ-KFIVHRDLKAENLLLDADMNIKIADFGFSN 161
Query: 153 FYDAQN-------IPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQ 205
+ N PP + APEL + + G + DV+S G+I+ +V
Sbjct: 162 EFTFGNKLDTFCGSPP---------YAAPELF--QGKKYDGPEV-DVWSLGVILYTLVSG 209
Query: 206 GLRHENLN 213
L + N
Sbjct: 210 SLPFDGQN 217
>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor
Length = 398
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 19 VVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPA 78
V + R G V +K +P + + +++ L L+ +H+N+ I + PT P
Sbjct: 70 VSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIA-IKDILRPTVP- 127
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFR-LSL------LTDLVRGMRYLHSVPHRLHGNLT 131
EF + D++ D ++ + + L+L L L+RG++Y+HS +H +L
Sbjct: 128 -YGEFKSVYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSA-QVIHRDLK 185
Query: 132 SRNCVIDARWVLKITDYAL 150
N +++ LKI D+ +
Sbjct: 186 PSNLLVNENCELKIGDFGM 204
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 33/188 (17%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLV-- 94
+ +L S S+ L + ++ L H N+ + LV E+ G + D LV
Sbjct: 41 DKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAH 100
Query: 95 --QDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
E + FR +V ++Y H +H +L + N ++DA +KI D+ ++
Sbjct: 101 GWMKEKEARAKFR-----QIVSAVQYCHQ-KFIVHRDLKAENLLLDADMNIKIADFGFSN 154
Query: 153 FYDAQN-------IPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQ 205
+ N PP + APEL + + + DV+S G+I+ +V
Sbjct: 155 EFTFGNKLDTFCGSPP---------YAAPELFQGKKY---DGPEVDVWSLGVILYTLVSG 202
Query: 206 GLRHENLN 213
L + N
Sbjct: 203 SLPFDGQN 210
>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC7|D Chain D, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC8|A Chain A, Crystal Structure Of The Apo Erk5 Kinase Domain
pdb|4IC8|B Chain B, Crystal Structure Of The Apo Erk5 Kinase Domain
Length = 442
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 19 VVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPA 78
V + R G V +K +P + + +++ L L+ +H+N+ I + PT P
Sbjct: 71 VSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIA-IKDILRPTVP- 128
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFR-LSL------LTDLVRGMRYLHSVPHRLHGNLT 131
EF + D++ D ++ + + L+L L L+RG++Y+HS +H +L
Sbjct: 129 -YGEFKSVYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSA-QVIHRDLK 186
Query: 132 SRNCVIDARWVLKITDYAL 150
N +++ LKI D+ +
Sbjct: 187 PSNLLVNENCELKIGDFGM 205
>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent
Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In
Complex With Sto-609
Length = 298
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 56 LQGLRHENLNPFIGFLWDPTGPAL--VWEFCCRGSLEDV-----LVQDEIKLDWTFRLSL 108
L+ L H N+ + L DP L V+E +G + +V L +D+ +
Sbjct: 90 LKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARF-------Y 142
Query: 109 LTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARE 168
DL++G+ YLH +H ++ N ++ +KI D+ +++ + + T
Sbjct: 143 FQDLIKGIEYLH-YQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSD-ALLSNTVGT 200
Query: 169 LLWTAPELLRDEAHRLRGSQPGDVYSFGIII 199
+ APE L E ++ + DV++ G+ +
Sbjct: 201 PAFMAPESLS-ETRKIFSGKALDVWAMGVTL 230
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 33/188 (17%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLV-- 94
+ +L S S+ L + ++ L H N+ + LV E+ G + D LV
Sbjct: 48 DKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAH 107
Query: 95 --QDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNS 152
E + FR +V ++Y H +H +L + N ++DA +KI D+ ++
Sbjct: 108 GRMKEKEARAKFR-----QIVSAVQYCHQ-KFIVHRDLKAENLLLDADMNIKIADFGFSN 161
Query: 153 FYDAQN-------IPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQ 205
+ N PP + APEL + + G + DV+S G+I+ +V
Sbjct: 162 EFTFGNKLDTFCGSPP---------YAAPELF--QGKKYDGPEV-DVWSLGVILYTLVSG 209
Query: 206 GLRHENLN 213
L + N
Sbjct: 210 SLPFDGQN 217
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 97 LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 154
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 155 KTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 210
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 211 VTVWELMTFGSK 222
>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536
Length = 294
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 23/197 (11%)
Query: 9 GADSSQYDVNVVDRKARYNGDLVQ----MKPVPLHGNTIELKSKSVDHLLQLQGLRHENL 64
G + ++++ D K + G +V +KP ++E+ + L H+++
Sbjct: 26 GGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIH--------RSLAHQHV 77
Query: 65 NPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPH 124
F GF D +V E C R SL ++ + + + R L +V G +YLH
Sbjct: 78 VGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARY-YLRQIVLGCQYLHR-NR 135
Query: 125 RLHGNLTSRNCVIDARWVLKITDYALNSF--YDAQNIPPRQKTARELLWTAPELLRDEAH 182
+H +L N ++ +KI D+ L + YD + ++ + APE+L + H
Sbjct: 136 VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER---KKVLCGTPNYIAPEVLSKKGH 192
Query: 183 RLRGSQPGDVYSFGIII 199
S DV+S G I+
Sbjct: 193 ----SFEVDVWSIGCIM 205
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 95 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 152
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 153 KTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 208
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 209 VTVWELMTFGSK 220
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 100 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 157
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 158 KTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 213
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 214 VTVWELMTFGSK 225
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 79 LVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRL-HGNLTSRNCVI 137
L+ + G L D + + + + + L+ + +GM YL RL H +L +RN ++
Sbjct: 93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLV 150
Query: 138 DARWVLKITDYALNSFYDAQNIPPRQKTAR-ELLWTAPELLRDEAHRLRGSQPGDVYSFG 196
+KITD+ A+ + + + W A E + HR+ Q DV+S+G
Sbjct: 151 KTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESI---LHRIYTHQ-SDVWSYG 206
Query: 197 IIIQEVVLQGLR 208
+ + E++ G +
Sbjct: 207 VTVWELMTFGSK 218
>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C-kit Tyrosine Kinase
Length = 313
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 24/150 (16%)
Query: 76 GPALVW-EFCCRGSLEDVL--VQDEIKLDWT---------------FRLSLLTDLVRGMR 117
GP LV E+CC G L + L +D T LS + +GM
Sbjct: 100 GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMA 159
Query: 118 YLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTARELLWTAPEL 176
+L S + +H +L +RN ++ + KI D+ L + N + + W APE
Sbjct: 160 FLAS-KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPES 218
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ + + DV+S+GI + E+ G
Sbjct: 219 IFNCVYTFE----SDVWSYGIFLWELFSLG 244
>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2
Length = 364
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 30/183 (16%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDL 112
RHEN+ + PT + + ++D++ D KL LS L +
Sbjct: 82 FRHENIIGINDIIRAPTIEQMKDVYI----VQDLMETDLYKLLKCQHLSNDHICYFLYQI 137
Query: 113 VRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA--RELL 170
+RG++Y+HS + LH +L N +++ LKI D+ L D P T E +
Sbjct: 138 LRGLKYIHSA-NVLHRDLKPSNLLLNTTCDLKICDFGLARVAD----PDHDHTGFLTEYV 192
Query: 171 WT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPFIGFLW 220
T APE++ + + D++S G I+ E+ + G + + LN +G L
Sbjct: 193 ATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 249
Query: 221 DPT 223
P+
Sbjct: 250 SPS 252
>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6
pdb|3UC4|B Chain B, The Crystal Structure Of Snf1-Related Kinase 2.6
Length = 362
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 21/155 (13%)
Query: 53 LLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLV------QDEIKLDWTFRL 106
++ + LRH N+ F + PT A+V E+ G L + + +DE +
Sbjct: 66 IINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARF------ 119
Query: 107 SLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWV--LKITDYALNSFYDAQNIPPRQK 164
L+ G+ Y H++ H +L N ++D LKI D+ + + P +
Sbjct: 120 -FFQQLISGVSYCHAM-QVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQP--KS 175
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIII 199
T + APE+L + + + DV+S G+ +
Sbjct: 176 TVGTPAYIAPEVLLKKEY---DGKVADVWSCGVTL 207
>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 361
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 27/203 (13%)
Query: 5 VRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENL 64
V+ +G S + V + R + N +LV +K + G I+ K ++ + LRH N+
Sbjct: 23 VKDIG--SGNFGVARLMRDKQSN-ELVAVKYIE-RGEKIDENVKR--EIINHRSLRHPNI 76
Query: 65 NPFIGFLWDPTGPALVWEFCCRGSLEDVLV------QDEIKLDWTFRLSLLTDLVRGMRY 118
F + PT A+V E+ G L + + +DE + L+ G+ Y
Sbjct: 77 VRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARF-------FFQQLISGVSY 129
Query: 119 LHSVPHRLHGNLTSRNCVIDARWV--LKITDYALNSFYDAQNIPPRQKTARELLWTAPEL 176
H++ H +L N ++D LKI D+ + + P + T + APE+
Sbjct: 130 CHAM-QVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQP--KSTVGTPAYIAPEV 186
Query: 177 LRDEAHRLRGSQPGDVYSFGIII 199
L + + + DV+S G+ +
Sbjct: 187 LLKKEY---DGKVADVWSCGVTL 206
>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3
Length = 361
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 21/156 (13%)
Query: 52 HLLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLV------QDEIKLDWTFR 105
++ + LRH N+ F + PT A++ E+ G L + + +DE +
Sbjct: 66 EIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICNAGRFSEDEARF----- 120
Query: 106 LSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWV--LKITDYALNSFYDAQNIPPRQ 163
L+ G+ Y HS+ H +L N ++D LKI D+ + + P +
Sbjct: 121 --FFQQLLSGVSYCHSM-QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQP--K 175
Query: 164 KTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIII 199
T + APE+L + + + DV+S G+ +
Sbjct: 176 STVGTPAYIAPEVLLRQEY---DGKIADVWSCGVTL 208
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 14/166 (8%)
Query: 44 ELKSKSVDHLLQLQ-----GLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEI 98
+L+ + V+H L+ + LRH N+ + D L+ EF RG L L Q
Sbjct: 51 QLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKEL-QKHG 109
Query: 99 KLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQN 158
+ D + + +L + Y H +H ++ N ++ + LKI D+ + +
Sbjct: 110 RFDEQRSATFMEELADALHYCHER-KVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLR 168
Query: 159 IPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
R+ L + PE++ + H + D++ G++ E ++
Sbjct: 169 ---RRXMCGTLDYLPPEMIEGKTH----DEKVDLWCAGVLCYEFLV 207
>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|2OWB|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|3FC2|A Chain A, Plk1 In Complex With Bi6727
Length = 335
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 23/197 (11%)
Query: 9 GADSSQYDVNVVDRKARYNGDLVQ----MKPVPLHGNTIELKSKSVDHLLQLQGLRHENL 64
G + ++++ D K + G +V +KP ++E+ + L H+++
Sbjct: 52 GGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIH--------RSLAHQHV 103
Query: 65 NPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPH 124
F GF D +V E C R SL ++ + + + R L +V G +YLH
Sbjct: 104 VGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARY-YLRQIVLGCQYLHRN-R 161
Query: 125 RLHGNLTSRNCVIDARWVLKITDYALNSF--YDAQNIPPRQKTARELLWTAPELLRDEAH 182
+H +L N ++ +KI D+ L + YD + ++ + APE+L + H
Sbjct: 162 VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER---KKVLCGTPNYIAPEVLSKKGH 218
Query: 183 RLRGSQPGDVYSFGIII 199
DV+S G I+
Sbjct: 219 SFE----VDVWSIGCIM 231
>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C- Kit Tyrosine Kinase
Length = 331
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 24/150 (16%)
Query: 76 GPALVW-EFCCRGSLEDVL--VQDEIKLDWT---------------FRLSLLTDLVRGMR 117
GP LV E+CC G L + L +D T LS + +GM
Sbjct: 118 GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMA 177
Query: 118 YLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTARELLWTAPEL 176
+L S + +H +L +RN ++ + KI D+ L + N + + W APE
Sbjct: 178 FLAS-KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPES 236
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ + + DV+S+GI + E+ G
Sbjct: 237 IFNCVYTFE----SDVWSYGIFLWELFSLG 262
>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib
Length = 336
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 24/150 (16%)
Query: 76 GPALVW-EFCCRGSLEDVL--VQDEIKLDWT---------------FRLSLLTDLVRGMR 117
GP LV E+CC G L + L +D T LS + +GM
Sbjct: 123 GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMA 182
Query: 118 YLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTARELLWTAPEL 176
+L S + +H +L +RN ++ + KI D+ L + N + + W APE
Sbjct: 183 FLAS-KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPES 241
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ + + DV+S+GI + E+ G
Sbjct: 242 IFNCVYTFE----SDVWSYGIFLWELFSLG 267
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 14/166 (8%)
Query: 44 ELKSKSVDHLLQLQ-----GLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEI 98
+L+ + V+H L+ + LRH N+ + D L+ EF RG L L Q
Sbjct: 51 QLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKEL-QKHG 109
Query: 99 KLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQN 158
+ D + + +L + Y H +H ++ N ++ + LKI D+ + +
Sbjct: 110 RFDEQRSATFMEELADALHYCHER-KVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLR 168
Query: 159 IPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
R+ L + PE++ + H + D++ G++ E ++
Sbjct: 169 ---RRXMCGTLDYLPPEMIEGKTH----DEKVDLWCAGVLCYEFLV 207
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 14/166 (8%)
Query: 44 ELKSKSVDHLLQLQ-----GLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEI 98
+L+ + V+H L+ + LRH N+ + D L+ EF RG L L Q
Sbjct: 52 QLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKEL-QKHG 110
Query: 99 KLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQN 158
+ D + + +L + Y H +H ++ N ++ + LKI D+ + +
Sbjct: 111 RFDEQRSATFMEELADALHYCHER-KVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLR 169
Query: 159 IPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
R+ L + PE++ + H + D++ G++ E ++
Sbjct: 170 ---RRXMCGTLDYLPPEMIEGKTH----DEKVDLWCAGVLCYEFLV 208
>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8U|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI DY L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDYGLARHTDDE----MTGYVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex
pdb|1PKG|B Chain B, Structure Of A C-kit Kinase Product Complex
Length = 329
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 24/150 (16%)
Query: 76 GPALVW-EFCCRGSLEDVL--VQDEIKLDWT---------------FRLSLLTDLVRGMR 117
GP LV E+CC G L + L +D T LS + +GM
Sbjct: 116 GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMA 175
Query: 118 YLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTARELLWTAPEL 176
+L S + +H +L +RN ++ + KI D+ L + N + + W APE
Sbjct: 176 FLAS-KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPES 234
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ + + DV+S+GI + E+ G
Sbjct: 235 IFNCVYTFE----SDVWSYGIFLWELFSLG 260
>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A
Benzolactam-Derived Inhibitor
Length = 333
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 23/197 (11%)
Query: 9 GADSSQYDVNVVDRKARYNGDLVQ----MKPVPLHGNTIELKSKSVDHLLQLQGLRHENL 64
G + ++++ D K + G +V +KP ++E+ + L H+++
Sbjct: 50 GGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIH--------RSLAHQHV 101
Query: 65 NPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPH 124
F GF D +V E C R SL ++ + + + R L +V G +YLH
Sbjct: 102 VGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARY-YLRQIVLGCQYLHRN-R 159
Query: 125 RLHGNLTSRNCVIDARWVLKITDYALNSF--YDAQNIPPRQKTARELLWTAPELLRDEAH 182
+H +L N ++ +KI D+ L + YD + ++ + APE+L + H
Sbjct: 160 VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER---KKVLCGTPNYIAPEVLSKKGH 216
Query: 183 RLRGSQPGDVYSFGIII 199
DV+S G I+
Sbjct: 217 SFE----VDVWSIGCIM 229
>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase
Length = 360
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNAMHY---NQTVDIWSVGCIMAELL 217
>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
pdb|3G0F|B Chain B, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
Length = 336
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 24/150 (16%)
Query: 76 GPALVW-EFCCRGSLEDVL--VQDEIKLDWT---------------FRLSLLTDLVRGMR 117
GP LV E+CC G L + L +D T LS + +GM
Sbjct: 123 GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMA 182
Query: 118 YLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNIPPRQKTARELLWTAPEL 176
+L S + +H +L +RN ++ + KI D+ L + N + + W APE
Sbjct: 183 FLAS-KNCIHRDLAARNILLTHGRITKICDFGLARHIKNDSNYVVKGNARLPVKWMAPES 241
Query: 177 LRDEAHRLRGSQPGDVYSFGIIIQEVVLQG 206
+ + + DV+S+GI + E+ G
Sbjct: 242 IFNCVYTFE----SDVWSYGIFLWELFSLG 267
>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d)
Length = 290
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD---AQNIPPRQK 164
+ +V+ + +LHS +H ++ N +I+A +K+ D+ ++ + A++I K
Sbjct: 114 IAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDAGCK 173
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
+ APE + E ++ S D++S GI + E+ +
Sbjct: 174 P-----YMAPERINPELNQKGYSVKSDIWSLGITMIELAI 208
>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase
Length = 353
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 90/202 (44%), Gaps = 21/202 (10%)
Query: 8 VGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPF 67
VG+ + + +D+++ G+ V +K + + ++ LL L+ ++HEN+
Sbjct: 32 VGSGAYGSVCSAIDKRS---GEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENV--- 85
Query: 68 IGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLS------LLTDLVRGMRYLHS 121
IG L D PA L +Q +++ + S L+ +++G++Y+HS
Sbjct: 86 IGLL-DVFTPASSLRNFYDFYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHS 144
Query: 122 VPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEA 181
+H +L N ++ LKI D+ L DA+ + APE++
Sbjct: 145 A-GVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMT----GYVVTRWYRAPEVILSWM 199
Query: 182 HRLRGSQPGDVYSFGIIIQEVV 203
H +Q D++S G I+ E++
Sbjct: 200 HY---NQTVDIWSVGCIMAEML 218
>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
Length = 327
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 75/184 (40%), Gaps = 25/184 (13%)
Query: 41 NTIELKSKSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
+ +L S S+ L + + L H N+ + LV E+ G + D LV
Sbjct: 48 DKTQLNSSSLQKLFREVRIXKVLNHPNIVKLFEVIETEKTLYLVXEYASGGEVFDYLVAH 107
Query: 97 EIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDA 156
+ R + +V ++Y H +H +L + N ++DA +KI D+ ++ +
Sbjct: 108 GRXKEKEAR-AKFRQIVSAVQYCHQ-KFIVHRDLKAENLLLDADXNIKIADFGFSNEFTF 165
Query: 157 QN-------IPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRH 209
N PP + APEL + + G + DV+S G+I+ +V L
Sbjct: 166 GNKLDAFCGAPP---------YAAPELF--QGKKYDGPEV-DVWSLGVILYTLVSGSLPF 213
Query: 210 ENLN 213
+ N
Sbjct: 214 DGQN 217
>pdb|3T4W|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
pdb|3T4W|B Chain B, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
pdb|3T4W|C Chain C, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
pdb|3T4W|D Chain D, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
Length = 432
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 239 DVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHELLWTAPELLRDEA 289
D+L +D + + + + VRG YL+ +PH WT+PE+ + A
Sbjct: 125 DILGKDRDRPVYALIGGRMNERVRGYTYLYPLPHHDMTAFWTSPEMAAESA 175
>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6
pdb|3UDB|B Chain B, Crystal Structure Of Snrk2.6
pdb|3UDB|C Chain C, Crystal Structure Of Snrk2.6
pdb|3UDB|D Chain D, Crystal Structure Of Snrk2.6
pdb|3UDB|E Chain E, Crystal Structure Of Snrk2.6
pdb|3UDB|F Chain F, Crystal Structure Of Snrk2.6
Length = 317
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 27/203 (13%)
Query: 5 VRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENL 64
V+ +GA + + D++A +LV +K + G I+ K ++ + LRH N+
Sbjct: 24 VKDIGAGNFGVARLMRDKQA---NELVAVKYIE-RGEKIDENVKR--EIINHRSLRHPNI 77
Query: 65 NPFIGFLWDPTGPALVWEFCCRGSLEDVLV------QDEIKLDWTFRLSLLTDLVRGMRY 118
F + PT A+V E+ G L + + +DE + L+ G+ Y
Sbjct: 78 VRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARF-------FFQQLISGVSY 130
Query: 119 LHSVPHRLHGNLTSRNCVIDARWV--LKITDYALNSFYDAQNIPPRQKTARELLWTAPEL 176
H++ H +L N ++D LKI D+ + + P + + APE+
Sbjct: 131 AHAM-QVAHRDLKLENTLLDGSPAPRLKIADFGYSKASVLHSQP--KSAVGTPAYIAPEV 187
Query: 177 LRDEAHRLRGSQPGDVYSFGIII 199
L + + + DV+S G+ +
Sbjct: 188 LLKKEY---DGKVADVWSCGVTL 207
>pdb|4EXU|A Chain A, Mapk13, Inactive Form
pdb|4EYJ|A Chain A, Mapk13 Complex With Inhibitor
pdb|4EYM|A Chain A, Mapk13 Complex With Inhibitor
Length = 371
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/198 (19%), Positives = 88/198 (44%), Gaps = 13/198 (6%)
Query: 8 VGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPF 67
VG+ + + +D+++ G+ V +K + + ++ LL L+ ++HEN+
Sbjct: 50 VGSGAYGSVCSAIDKRS---GEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGL 106
Query: 68 IGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRL--SLLTDLVRGMRYLHSVPHR 125
+ + ++F +Q + ++++ L+ +++G++Y+HS
Sbjct: 107 LDVFTPASSLRNFYDFYLVMPFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSA-GV 165
Query: 126 LHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLR 185
+H +L N ++ LKI D+ L DA+ + APE++ H
Sbjct: 166 VHRDLKPGNLAVNEDCELKILDFGLARHADAEMT----GYVVTRWYRAPEVILSWMHY-- 219
Query: 186 GSQPGDVYSFGIIIQEVV 203
+Q D++S G I+ E++
Sbjct: 220 -NQTVDIWSVGCIMAEML 236
>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase
Length = 380
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 150 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MXGXVA 204
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 205 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 237
>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex
With Dp802
Length = 354
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGXVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed
With A Specific Inhibitor Of Human P38 Map Kinase
Length = 380
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 20/128 (15%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTA- 166
L ++RG++Y+HS + LH +L N +++ LKI D+ L D P T
Sbjct: 149 FLYQILRGLKYIHSA-NVLHRDLKPSNLLLNTTXDLKICDFGLARVAD----PDHDHTGF 203
Query: 167 -RELLWT----APELLRDEAHRLRGSQPGDVYSFGIIIQEV-----VLQGLRH-ENLNPF 215
E + T APE++ + + D++S G I+ E+ + G + + LN
Sbjct: 204 LTEYVATRWYRAPEIMLNSKGYTKSI---DIWSVGCILAEMLSNRPIFPGKHYLDQLNHI 260
Query: 216 IGFLWDPT 223
+G L P+
Sbjct: 261 LGILGSPS 268
>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In
A Putative Auto-Inhibition State
Length = 340
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD---AQNIPPRQK 164
+ +V+ + +LHS +H ++ N +I+A +K+ D+ ++ + A+ I K
Sbjct: 158 IAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDSVAKTIDAGCK 217
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
+ APE + E ++ S D++S GI + E+ +
Sbjct: 218 P-----YMAPERINPELNQKGYSVKSDIWSLGITMIELAI 252
>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk
Docking Partner
Length = 380
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 150 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 204
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 205 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 237
>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655
pdb|1P38|A Chain A, The Structure Of The Map Kinase P38 At 2.1 Angstoms
Resolution
Length = 379
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 149 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 203
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 204 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 236
>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1-
Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3-
Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide
Length = 380
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 150 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 204
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 205 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 237
>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995
pdb|1BL7|A Chain A, The Complex Structure Of The Map Kinase P38SB220025
pdb|2EWA|A Chain A, Dual Binding Mode Of Pyridinylimidazole To Map Kinase P38
pdb|1A9U|A Chain A, The Complex Structure Of The Map Kinase P38SB203580
pdb|3HA8|A Chain A, The Complex Structure Of The Map Kinase P38COMPOUND 14B
Length = 379
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 149 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 203
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 204 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 236
>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor
Length = 383
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 153 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 207
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 208 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 240
>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase
Length = 362
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 132 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 186
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 187 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 219
>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955
Length = 350
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 128 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 182
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 183 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 215
>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376
pdb|3NNV|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp437
pdb|3NNW|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp802
Length = 354
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With
Inhibitor Pg-892579
pdb|2GTN|A Chain A, Mutated Map Kinase P38 (mus Musculus) In Complex With
Inhbitor Pg-951717
Length = 348
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 126 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 180
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 181 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 213
>pdb|3HEC|A Chain A, P38 In Complex With Imatinib
pdb|3HEG|A Chain A, P38 In Complex With Sorafenib
Length = 348
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 126 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 180
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 181 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 213
>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
Length = 349
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 127 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 181
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 182 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 214
>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A
Dihydroquinazolinone Inhibitor
pdb|1OUK|A Chain A, The Structure Of P38 Alpha In Complex With A
Pyridinylimidazole Inhibitor
pdb|1OUY|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydropyrido- Pyrimidine Inhibitor
pdb|1R39|A Chain A, The Structure Of P38alpha
pdb|1YQJ|A Chain A, Crystal Structure Of P38 Alpha In Complex With A Selective
Pyridazine Inhibitor
pdb|2OKR|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2OKR|D Chain D, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|B Chain B, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|1WFC|A Chain A, Structure Of Apo, Unphosphorylated, P38 Mitogen Activated
Protein Kinase P38 (P38 Map Kinase) The Mammalian
Homologue Of The Yeast Hog1 Protein
pdb|3DS6|A Chain A, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|B Chain B, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|C Chain C, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|D Chain D, P38 Complex With A Phthalazine Inhibitor
pdb|3FC1|X Chain X, Crystal Structure Of P38 Kinase Bound To
Pyrimido-Pyridazinone Inhibitor
pdb|3GFE|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor
pdb|3ITZ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridazine Inhibitor
pdb|3LHJ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor.
pdb|3ZYA|A Chain A, Human P38 Map Kinase In Complex With 2-Amino-Phenylamino-
Dibenzosuberone
pdb|3U8W|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Triazolopyridazinone Inhibitor
Length = 366
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 136 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 190
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 191 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 223
>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499
pdb|3FKO|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3668
pdb|3FLN|C Chain C, P38 Kinase Crystal Structure In Complex With R1487
Length = 372
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 142 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 196
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 197 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 229
>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48
pdb|3GCU|B Chain B, Human P38 Map Kinase In Complex With Rl48
pdb|3HV4|A Chain A, Human P38 Map Kinase In Complex With Rl51
pdb|3HV4|B Chain B, Human P38 Map Kinase In Complex With Rl51
pdb|3HV5|A Chain A, Human P38 Map Kinase In Complex With Rl24
pdb|3HV5|B Chain B, Human P38 Map Kinase In Complex With Rl24
pdb|3HV6|A Chain A, Human P38 Map Kinase In Complex With Rl39
pdb|3HV7|A Chain A, Human P38 Map Kinase In Complex With Rl38
pdb|3HUC|A Chain A, Human P38 Map Kinase In Complex With Rl40
pdb|3LFA|A Chain A, Human P38 Map Kinase In Complex With Dasatinib
pdb|3QUE|A Chain A, Human P38 Map Kinase In Complex With Skepinone-L
pdb|3QUD|A Chain A, Human P38 Map Kinase In Complex With
2-Amino-Phenylamino-Benzophenone
pdb|3UVP|A Chain A, Human P38 Map Kinase In Complex With A Benzamide
Substituted Benzosuberone
pdb|3UVQ|A Chain A, Human P38 Map Kinase In Complex With A Dibenzosuberone
Derivative
pdb|4EH2|A Chain A, Human P38 Map Kinase In Complex With Np-F1 And Rl87
pdb|4EH3|A Chain A, Human P38 Map Kinase In Complex With Np-F2 And Rl87
pdb|4EH4|A Chain A, Human P38 Map Kinase In Complex With Np-F3 And Rl87
pdb|4EH5|A Chain A, Human P38 Map Kinase In Complex With Np-F4 And Rl87
pdb|4EH6|A Chain A, Human P38 Map Kinase In Complex With Np-F5 And Rl87
pdb|4EH7|A Chain A, Human P38 Map Kinase In Complex With Np-F6 And Rl87
pdb|4EH8|A Chain A, Human P38 Map Kinase In Complex With Np-F7 And Rl87
pdb|4EH9|A Chain A, Human P38 Map Kinase In Complex With Np-F11 And Rl87
pdb|4EHV|A Chain A, Human P38 Map Kinase In Complex With Np-F10 And Rl87
pdb|3UVR|A Chain A, Human P38 Map Kinase In Complex With Km064
pdb|4DLI|A Chain A, Human P38 Map Kinase In Complex With Rl87
pdb|4DLJ|A Chain A, Human P38 Map Kinase In Complex With Rl163
Length = 360
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine
pdb|2YIX|A Chain A, Triazolopyridine Inhibitors Of P38
Length = 351
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 127 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 181
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 182 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 214
>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121
Length = 362
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 132 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 186
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 187 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 219
>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map
Kinase
Length = 360
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In
Phosphorylated P38a And In Solution
Length = 370
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 140 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 194
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 195 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 227
>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A
Pyrrole-2- Carboxamide Inhibitor
Length = 371
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 141 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 195
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 196 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 228
>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
pdb|3E93|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
Length = 371
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 141 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDXELKILDFGLARHTDDE----MTGYVA 195
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 196 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 228
>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea
pdb|2BAK|A Chain A, P38alpha Map Kinase Bound To Mpaq
pdb|4A9Y|A Chain A, P38alpha Map Kinase Bound To Cmpd 8
pdb|4AA0|A Chain A, P38alpha Map Kinase Bound To Cmpd 2
pdb|4AA4|A Chain A, P38alpha Map Kinase Bound To Cmpd 22
pdb|4AAC|A Chain A, P38alpha Map Kinase Bound To Cmpd 29
Length = 365
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 135 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 189
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 190 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 222
>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715
pdb|3ZSH|A Chain A, X-Ray Structure Of P38alpha Bound To Scio-469
pdb|3ZSI|A Chain A, X-Ray Structure Of P38alpha Bound To Vx-745
pdb|3ZS5|A Chain A, Structural Basis For Kinase Selectivity Of Three Clinical
P38alpha Inhibitors
Length = 362
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 132 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 186
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 187 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 219
>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant
Length = 360
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|3MW1|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|2YIS|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase.
pdb|2YIW|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase
Length = 359
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 129 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 183
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 184 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 216
>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In
Complex With 4-[3-Methylsulfanylanilino]-6,7-
Dimethoxyquinazoline
pdb|1KV1|A Chain A, P38 Map Kinase In Complex With Inhibitor 1
pdb|1KV2|A Chain A, Human P38 Map Kinase In Complex With Birb 796
pdb|1WBO|A Chain A, Fragment Based P38 Inhibitors
pdb|1W7H|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W82|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W83|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W84|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1ZZ2|A Chain A, Two Classes Of P38alpha Map Kinase Inhibitors Having A
Common Diphenylether Core But Exhibiting Divergent
Binding Modes
pdb|1WBN|A Chain A, Fragment Based P38 Inhibitors
pdb|1WBS|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBT|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-based Lead Generation.
pdb|1WBV|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBW|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1ZYJ|A Chain A, Human P38 Map Kinase In Complex With Inhibitor 1a
pdb|2ZAZ|A Chain A, Crystal Structure Of P38 In Complex With 4-Anilino
Quinoline Inhibitor
pdb|2ZB0|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|2ZB1|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|3HL7|A Chain A, Crystal Structure Of Human P38alpha Complexed With Sd-0006
pdb|3HLL|A Chain A, Crystal Structure Of Human P38alpha Complexed With
Ph-797804
pdb|3HP2|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyridinone Compound
pdb|3HP5|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyrimidopyridazinone Compound
pdb|3KF7|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Triazolopyrimidine Compound
pdb|3MGY|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3ROC|A Chain A, Crystal Structure Of Human P38 Alpha Complexed With A
Pyrimidinone Compound
pdb|3RIN|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|4E5B|A Chain A, Structure Of P38a Map Kinase Without Bog
pdb|4E6A|A Chain A, P38a-Pia23 Complex
pdb|4E6C|A Chain A, P38a-perifosine Complex
pdb|4E8A|A Chain A, The Crystal Structure Of P38a Map Kinase In Complex With
Pia24
Length = 360
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based
Inhibitor
Length = 383
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 153 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MXGYVA 207
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 208 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 240
>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase
Length = 367
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 137 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 191
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 192 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 224
>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine
pdb|4AA5|A Chain A, P38alpha Map Kinase Bound To Cmpd 33
Length = 365
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 135 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDXELKILDFGLARHTDDE----MTGYVA 189
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 190 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 222
>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195
Length = 365
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 135 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDXELKILDFGLARHTDDE----MTGYVA 189
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 190 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 222
>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Nuclear Substrate Mef2a
pdb|1LEZ|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Activator Mkk3b
Length = 360
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A
Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE
COMPLEX IN Solution
Length = 359
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 135 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 189
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 190 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 222
>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant
Length = 360
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L H N+ + L+ E+ G + D LV + R S +V ++Y
Sbjct: 71 LNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEAR-SKFRQIVSAVQY 129
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQ-------NIPPRQKTARELLW 171
H +H +L + N ++DA +KI D+ ++ + PP +
Sbjct: 130 CHQ-KRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPP---------Y 179
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQGLRHENLN 213
APEL + + G + DV+S G+I+ +V L + N
Sbjct: 180 AAPELF--QGKKYDGPEV-DVWSLGVILYTLVSGSLPFDGQN 218
>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole
Inhibitor
Length = 372
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 142 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 196
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 197 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 229
>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
pdb|3IPH|A Chain A, Crystal Structure Of P38 In Complex With A Biphenylamide
Inhibitor
Length = 360
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDXELKILDFGLARHTDDE----MTGYVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195
pdb|3FKL|A Chain A, P38 Kinase Crystal Structure In Complex With Ro9552
pdb|3FKN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro7125
pdb|3FL4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro5634
pdb|3FLQ|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((S)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin
pdb|3FLS|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((R)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin-7-One
pdb|3FLW|A Chain A, P38 Kinase Crystal Structure In Complex With Pamapimod
pdb|3FLY|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-Isopropylamino-8-Methyl-8h-Pyrido[2,
3- D]pyrimidin-7-One
pdb|3FLZ|A Chain A, P38 Kinase Crystal Structure In Complex With
8-Methyl-6-Phenoxy-2-
(Tetrahydro-Pyran-4-Ylamino)-8h-Pyrido[2,
3-D]pyrimidin-7-One
pdb|3FMH|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((R)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FMJ|A Chain A, P38 Kinase Crystal Structure In Complex With
4-(5-Methyl-3-Phenyl- Isoxazol-4-Yl)-Pyrimidin-2-Ylamine
pdb|3FMK|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((S)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FML|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6224
pdb|3FMM|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6226
pdb|3FMN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro2530
pdb|3FSF|A Chain A, P38 Kinase Crystal Structure In Complex With 3-(2,6-
Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-
Phenylamino]-
1-Methyl-3,4-Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3FSK|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6257
Length = 372
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 142 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 196
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 197 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 229
>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk
Docking Peptide
Length = 362
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 132 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDSELKILDFGLARHTDDE----MTGYVA 186
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 187 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 219
>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant
Length = 360
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P-
Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl-
Pyridin-3-Yl)naphthalen-1-Yl]urea
pdb|3CTQ|A Chain A, Structure Of Map Kinase P38 In Complex With A
1-O-Tolyl-1,2, 3-Triazole-4-Carboxamide
Length = 348
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 126 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 180
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 181 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 213
>pdb|2OZA|B Chain B, Structure Of P38alpha Complex
pdb|3P78|A Chain A, P38 Inhibitor-Bound
pdb|3P79|A Chain A, P38 Inhibitor-Bound
pdb|3P7A|A Chain A, P38 Inhibitor-Bound
pdb|3P7B|A Chain A, P38 Inhibitor-Bound
pdb|3P7C|A Chain A, P38 Inhibitor-Bound
pdb|3P5K|A Chain A, P38 Inhibitor-Bound
Length = 366
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 136 LIYQILRGLKYIHSAD-IIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 190
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 191 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 223
>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a)
Activating Mutant
Length = 367
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 22/103 (21%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L + TA
Sbjct: 137 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGL-----------ARHTAD 184
Query: 168 ELL-------WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
E+ + APE++ + H +Q D++S G I+ E++
Sbjct: 185 EMTGYVATRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 224
>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With
Inhibitor Pg-874743
pdb|2GHM|A Chain A, Mutated Map Kinase P38 (Mus Musculus) In Complex With
Inhbitor Pg-895449
Length = 348
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 126 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MAGFVA 180
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 181 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 213
>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex
pdb|2QD9|A Chain A, P38 Alpha Map Kinase Inhibitor Based On Heterobicyclic
Scaffolds
pdb|2RG5|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11b
pdb|2RG6|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11j
pdb|3C5U|A Chain A, P38 Alpha Map Kinase Complexed With A Benzothiazole Based
Inhibitor
pdb|3BV2|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 30
pdb|3BV3|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 2
pdb|3BX5|A Chain A, P38 Alpha Map Kinase Complexed With Bms-640994
pdb|3L8X|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Pyrimidine
Based Inhibitor
pdb|3NWW|A Chain A, P38 Alpha Kinase Complexed With A
2-Aminothiazol-5-Yl-Pyrimidine Based Inhibitor
pdb|3MVL|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVL|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVM|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3MVM|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3OCG|A Chain A, P38 Alpha Kinase Complexed With A 5-Amino-Pyrazole Based
Inhibitor
pdb|3S4Q|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Triazine Based
Inhibitor
Length = 366
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 136 LIYQILRGLKYIHSAD-IIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 190
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 191 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 223
>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
Length = 360
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l)
Activating Mutant
Length = 367
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 22/103 (21%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L + TA
Sbjct: 137 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGL-----------ARHTAD 184
Query: 168 ELL-------WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
E+ + APE++ + H +Q D++S G I+ E++
Sbjct: 185 EMTGYVATRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 224
>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain
In Complex With A Monocyclic Pyrazolone Inhibitor
Length = 360
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MAGFVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38)
Length = 360
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MAGFVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 21/152 (13%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
L H N+ + L+ E+ G + D LV + R S +V ++Y
Sbjct: 68 LNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEAR-SKFRQIVSAVQY 126
Query: 119 LHSVPHRLHGNLTSRNCVIDARWVLKITDYAL-NSFYDAQNI------PPRQKTARELLW 171
H +H +L + N ++DA +KI D+ N F + PP +
Sbjct: 127 CHQ-KRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDTFCGSPP---------Y 176
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
APEL + + G + DV+S G+I+ +V
Sbjct: 177 AAPELF--QGKKYDGPEV-DVWSLGVILYTLV 205
>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-A
pdb|2FSM|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-B
Length = 367
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 22/103 (21%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L + TA
Sbjct: 137 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGL-----------ARHTAD 184
Query: 168 ELL-------WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
E+ + APE++ + H +Q D++S G I+ E++
Sbjct: 185 EMTGYVATRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 224
>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydroquinolinone
pdb|1R3C|A Chain A, The Structure Of P38alpha C162s Mutant
pdb|2I0H|A Chain A, The Structure Of P38alpha In Complex With An
Arylpyridazinone
pdb|3GC7|A Chain A, The Structure Of P38alpha In Complex With A
Dihydroquinazolinone
pdb|3NEW|A Chain A, P38-Alpha Complexed With Compound 10
Length = 366
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 136 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDSELKILDFGLARHTDDE----MTGYVA 190
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 191 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 223
>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In
Complex With P38 Map Kinase
Length = 360
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D FY A++
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILD-----FYLARHTDDEMTGYV 183
Query: 168 ELLW-TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
W APE++ + H +Q D++S G I+ E++
Sbjct: 184 ATRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARW 141
+ R S E + ++++K L +L + +LHS+ ++ +L N ++D
Sbjct: 112 DLFTRLSKEVMFTEEDVKF-------YLAELALALDHLHSLG-IIYRDLKPENILLDEEG 163
Query: 142 VLKITDYALNSFYDAQNIPPRQKTAR---ELLWTAPELLRDEAHRLRGSQPGDVYSFGII 198
+K+TD+ L+ ++I +K + + APE++ H +Q D +SFG++
Sbjct: 164 HIKLTDFGLSK----ESIDHEKKAYSFCGTVEYMAPEVVNRRGH----TQSADWWSFGVL 215
Query: 199 IQEVV 203
+ E++
Sbjct: 216 MFEML 220
>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
pdb|2I6L|B Chain B, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
Length = 320
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 19/125 (15%)
Query: 48 KSVDHLLQ----LQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDV-LVQDEIKLDW 102
+SV H L+ ++ L H+N+ L P+G L + L V +VQ+ ++ D
Sbjct: 50 QSVKHALREIKIIRRLDHDNIVKVFEILG-PSGSQLTDDVGSLTELNSVYIVQEYMETDL 108
Query: 103 TFRLS-----------LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDAR-WVLKITDYAL 150
L + L+RG++Y+HS + LH +L N I+ VLKI D+ L
Sbjct: 109 ANVLEQGPLLEEHARLFMYQLLRGLKYIHSA-NVLHRDLKPANLFINTEDLVLKIGDFGL 167
Query: 151 NSFYD 155
D
Sbjct: 168 ARIMD 172
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARW 141
+ R S E + ++++K L +L + +LHS+ ++ +L N ++D
Sbjct: 113 DLFTRLSKEVMFTEEDVKF-------YLAELALALDHLHSLG-IIYRDLKPENILLDEEG 164
Query: 142 VLKITDYALNSFYDAQNIPPRQKTAR---ELLWTAPELLRDEAHRLRGSQPGDVYSFGII 198
+K+TD+ L+ ++I +K + + APE++ H +Q D +SFG++
Sbjct: 165 HIKLTDFGLSK----ESIDHEKKAYSFCGTVEYMAPEVVNRRGH----TQSADWWSFGVL 216
Query: 199 IQEVV 203
+ E++
Sbjct: 217 MFEML 221
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARW 141
+ R S E + ++++K L +L + +LHS+ ++ +L N ++D
Sbjct: 112 DLFTRLSKEVMFTEEDVKF-------YLAELALALDHLHSLG-IIYRDLKPENILLDEEG 163
Query: 142 VLKITDYALNSFYDAQNIPPRQKTAR---ELLWTAPELLRDEAHRLRGSQPGDVYSFGII 198
+K+TD+ L+ ++I +K + + APE++ H +Q D +SFG++
Sbjct: 164 HIKLTDFGLSK----ESIDHEKKAYSFCGTVEYMAPEVVNRRGH----TQSADWWSFGVL 215
Query: 199 IQEVV 203
+ E++
Sbjct: 216 MFEML 220
>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta
(I4122)
Length = 677
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 12/132 (9%)
Query: 77 PALVWEFCCRGSLEDVLVQDE--IKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRN 134
P L E+C G L L Q E L +LL+D+ +RYLH +H +L N
Sbjct: 94 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHE-NRIIHRDLKPEN 152
Query: 135 CVID---ARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGD 191
V+ R + KI D D + + L + APELL + + + D
Sbjct: 153 IVLQPGPQRLIHKIIDLGYAKELDQGELCT--EFVGTLQYLAPELLEQKKYTV----TVD 206
Query: 192 VYSFGIIIQEVV 203
+SFG + E +
Sbjct: 207 YWSFGTLAFECI 218
>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|B Chain B, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|C Chain C, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|D Chain D, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|E Chain E, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|F Chain F, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|G Chain G, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|H Chain H, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
Length = 676
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 12/132 (9%)
Query: 77 PALVWEFCCRGSLEDVLVQDE--IKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRN 134
P L E+C G L L Q E L +LL+D+ +RYLH +H +L N
Sbjct: 93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHE-NRIIHRDLKPEN 151
Query: 135 CVID---ARWVLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGD 191
V+ R + KI D D + + L + APELL + + + D
Sbjct: 152 IVLQPGPQRLIHKIIDLGYAKELDQGELCT--EFVGTLQYLAPELLEQKKYTV----TVD 205
Query: 192 VYSFGIIIQEVV 203
+SFG + E +
Sbjct: 206 YWSFGTLAFECI 217
>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580
pdb|3GCQ|A Chain A, Human P38 Map Kinase In Complex With Rl45
pdb|3GCS|A Chain A, Human P38 Map Kinase In Complex With Sorafenib
pdb|3GCV|A Chain A, Human P38 Map Kinase In Complex With Rl62
pdb|3HV3|A Chain A, Human P38 Map Kinase In Complex With Rl49
pdb|3IW5|A Chain A, Human P38 Map Kinase In Complex With An Indole Derivative
pdb|3IW6|A Chain A, Human P38 Map Kinase In Complex With A Benzylpiperazin-
Pyrrol
pdb|3IW7|A Chain A, Human P38 Map Kinase In Complex With An Imidazo-Pyridine
pdb|3IW8|A Chain A, Structure Of Inactive Human P38 Map Kinase In Complex With
A Thiazole-Urea
pdb|3HUB|A Chain A, Human P38 Map Kinase In Complex With Scios-469
pdb|3L8S|A Chain A, Human P38 Map Kinase In Complex With Cp-547632
pdb|3LFB|A Chain A, Human P38 Map Kinase In Complex With Rl98
pdb|3LFC|A Chain A, Human P38 Map Kinase In Complex With Rl99
pdb|3LFD|A Chain A, Human P38 Map Kinase In Complex With Rl113
pdb|3LFE|A Chain A, Human P38 Map Kinase In Complex With Rl116
pdb|3LFF|A Chain A, Human P38 Map Kinase In Complex With Rl166
pdb|3PG3|A Chain A, Human P38 Map Kinase In Complex With Rl182
Length = 360
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D+ L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDSELKILDFGLCRHTDDE----MTGYVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 81/176 (46%), Gaps = 32/176 (18%)
Query: 43 IELKSKSVDHLLQLQGLRHENLNPFI----GFLWDPTGPALVWEFCCRGSLEDVLVQDE- 97
+E+K + +++ + HE +P+I G + ++ E GSL+ VL + +
Sbjct: 51 LEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEAKR 110
Query: 98 IKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL------- 150
I + ++S+ ++RG+ YL +H ++ N ++++R +K+ D+ +
Sbjct: 111 IPEEILGKVSIA--VLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS 168
Query: 151 --NSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
NSF ++ + APE L+ + ++ D++S G+ + E+ +
Sbjct: 169 MANSFVGTRS------------YMAPERLQGTHYSVQ----SDIWSMGLSLVELAV 208
>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|B Chain B, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|C Chain C, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|D Chain D, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
Length = 316
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD---AQNIPPRQK 164
+ +V+ + +LHS +H ++ N +I+A +K D+ ++ + A++I K
Sbjct: 141 IAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKXCDFGISGYLVDDVAKDIDAGCK 200
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
+ APE + E ++ S D++S GI E+ +
Sbjct: 201 P-----YXAPERINPELNQKGYSVKSDIWSLGITXIELAI 235
>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha
pdb|3OHT|B Chain B, Crystal Structure Of Salmo Salar P38alpha
Length = 389
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 37/212 (17%)
Query: 4 GVRSVGADSSQYDVNVVDRKARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHEN 63
G + G+ S YDV +G + +K + +I ++ L L+ ++HEN
Sbjct: 60 GSGAYGSVCSSYDVK--------SGLKIAVKKLSRPFQSIIHAKRTYRELRLLKHMKHEN 111
Query: 64 LNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEI---KLDWTFRLSLLTD--------- 111
+ IG L D PA E DV + + L+ + LTD
Sbjct: 112 V---IGLL-DVFTPATSLE-----EFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQ 162
Query: 112 LVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLW 171
++RG++Y+HS +H +L N ++ LKI D+ L D + +
Sbjct: 163 ILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVATRWY 217
Query: 172 TAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
APE++ + H + D++S G I+ E++
Sbjct: 218 RAPEIMLNWMHY---NMTVDIWSVGCIMAELL 246
>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase
pdb|3ZUT|B Chain B, The Structure Of Ost1 (D160a) Kinase
Length = 362
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 21/155 (13%)
Query: 53 LLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLV------QDEIKLDWTFRL 106
++ + LRH N+ F + PT A+V E+ G L + + +DE +
Sbjct: 66 IINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARF------ 119
Query: 107 SLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWV--LKITDYALNSFYDAQNIPPRQK 164
L+ G+ Y H++ H +L N ++D LKI + + + P +
Sbjct: 120 -FFQQLISGVSYCHAM-QVCHRDLKLENTLLDGSPAPRLKICAFGYSKSSVLHSQP--KS 175
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIII 199
T + APE+L + + + DV+S G+ +
Sbjct: 176 TVGTPAYIAPEVLLKKEY---DGKVADVWSCGVTL 207
>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
With Gold
pdb|3ZUU|B Chain B, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
With Gold
Length = 362
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 21/155 (13%)
Query: 53 LLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLV------QDEIKLDWTFRL 106
++ + LRH N+ F + PT A+V E+ G L + + +DE +
Sbjct: 66 IINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARF------ 119
Query: 107 SLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWV--LKITDYALNSFYDAQNIPPRQK 164
L+ G+ Y H++ H +L N ++D LKI + + + P +
Sbjct: 120 -FFQQLISGVSYCHAM-QVCHRDLKLENTLLDGSPAPRLKICAFGYSKSSVLHSQP--KD 175
Query: 165 TARELLWTAPELLRDEAHRLRGSQPGDVYSFGIII 199
T + APE+L + + + DV+S G+ +
Sbjct: 176 TVGTPAYIAPEVLLKKEY---DGKVADVWSCGVTL 207
>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8T|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg-Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDAGLARHTDDE----MTGYVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|3BE8|A Chain A, Crystal Structure Of The Synaptic Protein Neuroligin 4
pdb|3BE8|B Chain B, Crystal Structure Of The Synaptic Protein Neuroligin 4
pdb|2WQZ|A Chain A, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2WQZ|B Chain B, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2XB6|A Chain A, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
pdb|2XB6|B Chain B, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
Length = 588
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 16/137 (11%)
Query: 155 DAQNIPPRQKTARELL----WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG---L 207
D +N R+KT L W AP + + H GS P Y+F Q +
Sbjct: 398 DKENPETRRKTLVALFTDHQWVAPAVATADLHAQYGS-PTYFYAFYHHCQSEMKPSWADS 456
Query: 208 RHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTD----LVRG 263
H + P++ F GP + F C S DV++ + WT + D + +
Sbjct: 457 AHGDEVPYV-FGIPMIGPTEL--FSCNFSKNDVMLSAVVMTYWT-NFAKTGDPNQPVPQD 512
Query: 264 MRYLHSVPHRLHELLWT 280
+++H+ P+R E+ W+
Sbjct: 513 TKFIHTKPNRFEEVAWS 529
>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3OBJ|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
Response To Inhibitor Binding
Length = 360
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDRGLARHTDDE----MTGYVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3OBG|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
Response To Inhibitor Binding
pdb|3OC1|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI D L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILDGGLARHTDDE----MTGYVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric
Inhibitor
Length = 446
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 110 TDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL--NSFYDAQNIPPRQKTAR 167
++V + YLHS + ++ +L N ++D +KITD+ L D + T
Sbjct: 258 AEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPE 317
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
L APE+L D + + D + G+++ E++
Sbjct: 318 YL---APEVLEDNDY----GRAVDWWGLGVVMYEMM 346
>pdb|3BG9|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
Length = 718
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 282 PELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCMLS 321
P+ L+D ++ PG V ++ V +G+P C+LS
Sbjct: 642 PKALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLS 681
>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex
With N-(4-
(5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h-
Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide
Length = 446
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 110 TDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL--NSFYDAQNIPPRQKTAR 167
++V + YLHS + ++ +L N ++D +KITD+ L D + T
Sbjct: 255 AEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPE 314
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
L APE+L D + + D + G+++ E++
Sbjct: 315 YL---APEVLEDNDY----GRAVDWWGLGVVMYEMM 343
>pdb|3BG3|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
Length = 718
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 282 PELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPFCMLS 321
P+ L+D ++ PG V ++ V +G+P C+LS
Sbjct: 642 PKALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLS 681
>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate
Peptide And Inhibitor
pdb|3CQW|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate
Peptide And Inhibitor
pdb|3MV5|A Chain A, Crystal Structure Of Akt-1-Inhibitor Complexes
pdb|3MVH|A Chain A, Crystal Structure Of Akt-1-Inhibitor Complexes
Length = 342
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 110 TDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL--NSFYDAQNIPPRQKTAR 167
++V + YLHS + ++ +L N ++D +KITD+ L D + T
Sbjct: 117 AEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKXFCGTPE 176
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE+L D + + D + G+++ E++
Sbjct: 177 ---YLAPEVLEDNDY----GRAVDWWGLGVVMYEMM 205
>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363
Length = 340
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 110 TDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL--NSFYDAQNIPPRQKTAR 167
++V + YLHS + ++ +L N ++D +KITD+ L D + T
Sbjct: 115 AEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKXFCGTPE 174
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE+L D + + D + G+++ E++
Sbjct: 175 ---YLAPEVLEDNDY----GRAVDWWGLGVVMYEMM 203
>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
pdb|3MPA|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 108 LLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTAR 167
L+ ++RG++Y+HS +H +L N ++ LKI + L D +
Sbjct: 130 LIYQILRGLKYIHSA-DIIHRDLKPSNLAVNEDCELKILGFGLARHTDDE----MTGYVA 184
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE++ + H +Q D++S G I+ E++
Sbjct: 185 TRWYRAPEIMLNWMHY---NQTVDIWSVGCIMAELL 217
>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
pdb|3OCB|B Chain B, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
pdb|3OW4|A Chain A, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|3OW4|B Chain B, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|3QKK|A Chain A, Spirochromane Akt Inhibitors
pdb|3QKL|A Chain A, Spirochromane Akt Inhibitors
pdb|3QKM|A Chain A, Spirocyclic Sulfonamides As Akt Inhibitors
pdb|4EKK|A Chain A, Akt1 With Amp-Pnp
pdb|4EKK|B Chain B, Akt1 With Amp-Pnp
pdb|4EKL|A Chain A, Akt1 With Gdc0068
Length = 341
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 110 TDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL--NSFYDAQNIPPRQKTAR 167
++V + YLHS + ++ +L N ++D +KITD+ L D + T
Sbjct: 116 AEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKXFCGTPE 175
Query: 168 ELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVV 203
+ APE+L D + + D + G+++ E++
Sbjct: 176 ---YLAPEVLEDNDY----GRAVDWWGLGVVMYEMM 204
>pdb|4ADY|A Chain A, Crystal Structure Of 26s Proteasome Subunit Rpn2
pdb|4ADY|B Chain B, Crystal Structure Of 26s Proteasome Subunit Rpn2
Length = 963
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 317 FCMLSLTPEGKL-VRHTPQAVPVFQRACYA 345
F LS TP + +R + QA+P FQ CYA
Sbjct: 759 FLSLSFTPTTVIGIRGSDQAIPKFQXNCYA 788
>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770
Length = 285
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVI 137
E+C GSL D + ++ + + F+ + L DL+ RG+RY+HS+ +H ++ N I
Sbjct: 87 EYCNGGSLADAISENYRIMSY-FKEAELKDLLLQVGRGLRYIHSMS-LVHMDIKPSNIFI 144
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 230 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLV----RGMRYLHSV 270
E+C GSL D + ++ + + F+ + L DL+ RG+RY+HS+
Sbjct: 87 EYCNGGSLADAISENYRIMSY-FKEAELKDLLLQVGRGLRYIHSM 130
>pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 945
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 317 FCMLSLTPEGKL-VRHTPQAVPVFQRACYA 345
F LS TP + +R + QA+P FQ CYA
Sbjct: 748 FLSLSFTPTTVIGIRGSDQAIPKFQMNCYA 777
>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed
With Inhibitor Pd0407824
Length = 289
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVI 137
E+C GSL D + ++ + + F+ + L DL+ RG+RY+HS+ +H ++ N I
Sbjct: 91 EYCNGGSLADAISENYRIMSY-FKEAELKDLLLQVGRGLRYIHSMS-LVHMDIKPSNIFI 148
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 230 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLV----RGMRYLHSV 270
E+C GSL D + ++ + + F+ + L DL+ RG+RY+HS+
Sbjct: 91 EYCNGGSLADAISENYRIMSY-FKEAELKDLLLQVGRGLRYIHSM 134
>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839
pdb|2IO6|A Chain A, Wee1 Kinase Complexed With Inhibitor Pd330961
Length = 287
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVI 137
E+C GSL D + ++ + + F+ + L DL+ RG+RY+HS+ +H ++ N I
Sbjct: 89 EYCNGGSLADAISENYRIMSY-FKEAELKDLLLQVGRGLRYIHSMS-LVHMDIKPSNIFI 146
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 230 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLV----RGMRYLHSV 270
E+C GSL D + ++ + + F+ + L DL+ RG+RY+HS+
Sbjct: 89 EYCNGGSLADAISENYRIMSY-FKEAELKDLLLQVGRGLRYIHSM 132
>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396
pdb|3BIZ|A Chain A, Wee1 Kinase Complex With Inhibitor Pd331618
pdb|3CQE|A Chain A, Wee1 Kinase Complex With Inhibitor Pd074291
pdb|3CR0|A Chain A, Wee1 Kinase Complex With Inhibitor Pd259_809
Length = 287
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLV----RGMRYLHSVPHRLHGNLTSRNCVI 137
E+C GSL D + ++ + + F+ + L DL+ RG+RY+HS+ +H ++ N I
Sbjct: 89 EYCNGGSLADAISENYRIMSY-FKEAELKDLLLQVGRGLRYIHSMS-LVHMDIKPSNIFI 146
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 230 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLV----RGMRYLHSV 270
E+C GSL D + ++ + + F+ + L DL+ RG+RY+HS+
Sbjct: 89 EYCNGGSLADAISENYRIMSY-FKEAELKDLLLQVGRGLRYIHSM 132
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 83/184 (45%), Gaps = 15/184 (8%)
Query: 27 NGDLVQMKPVPLHGNTIELKSKSVDHL-LQLQGLRHENLNPFIGFL----WDPTGPALVW 81
G L MK L TI K+K+ +H + Q L H +PF+ L T L+
Sbjct: 81 TGKLYAMKV--LKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLIL 138
Query: 82 EFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARW 141
++ G L L Q E + ++ + ++V + +LH + ++ ++ N ++D+
Sbjct: 139 DYINGGELFTHLSQRERFTEHEVQI-YVGEIVLALEHLHKLG-IIYRDIKLENILLDSNG 196
Query: 142 VLKITDYALNSFYDAQNIPPRQKTARELLWTAPELLR--DEAHRLRGSQPGDVYSFGIII 199
+ +TD+ L+ + A + + AP+++R D H + D +S G+++
Sbjct: 197 HVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGH----DKAVDWWSLGVLM 252
Query: 200 QEVV 203
E++
Sbjct: 253 YELL 256
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 81/171 (47%), Gaps = 22/171 (12%)
Query: 43 IELKSKSVDHLLQLQGLRHENLNPFI----GFLWDPTGPALVWEFCCRGSLEDVLVQ-DE 97
+E+K + +++ + HE +P+I G + ++ E GSL+ VL +
Sbjct: 44 LEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR 103
Query: 98 IKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQ 157
I ++S+ +++G+ YL +H ++ N ++++R +K+ D+ ++ Q
Sbjct: 104 IPEQILGKVSIA--VIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS----GQ 157
Query: 158 NIPPRQKTARELLWT----APELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
I + A E + T +PE L+ + ++ D++S G+ + E+ +
Sbjct: 158 LI---DEMANEFVGTRSYMSPERLQGTHYSVQ----SDIWSMGLSLVEMAV 201
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/176 (18%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 43 IELKSKSVDHLLQLQGLRHENLNPFI----GFLWDPTGPALVWEFCCRGSLEDVLVQ-DE 97
+E+K + +++ + HE +P+I G + ++ E GSL+ VL +
Sbjct: 103 LEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR 162
Query: 98 IKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL------- 150
I ++S+ +++G+ YL +H ++ N ++++R +K+ D+ +
Sbjct: 163 IPEQILGKVSIA--VIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS 220
Query: 151 --NSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
NSF ++ + +PE L+ + ++ D++S G+ + E+ +
Sbjct: 221 MANSFVGTRS------------YMSPERLQGTHYSVQ----SDIWSMGLSLVEMAV 260
>pdb|3U02|A Chain A, Crystal Structure Of The Trna Modifier Tias From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr225
pdb|3U02|B Chain B, Crystal Structure Of The Trna Modifier Tias From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr225
pdb|3U02|C Chain C, Crystal Structure Of The Trna Modifier Tias From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr225
pdb|3U02|D Chain D, Crystal Structure Of The Trna Modifier Tias From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr225
Length = 252
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 44 ELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQD 96
E+K+ + ++ +L + HEN NP I FL P + EF R E V +++
Sbjct: 71 EVKTLVIRYVRELADIDHENTNPGIVFLIGEV-PKELEEFSLRALREHVTIEE 122
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/176 (18%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 43 IELKSKSVDHLLQLQGLRHENLNPFI----GFLWDPTGPALVWEFCCRGSLEDVLVQ-DE 97
+E+K + +++ + HE +P+I G + ++ E GSL+ VL +
Sbjct: 41 LEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR 100
Query: 98 IKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL------- 150
I ++S+ +++G+ YL +H ++ N ++++R +K+ D+ +
Sbjct: 101 IPEQILGKVSIA--VIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS 158
Query: 151 --NSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
NSF ++ + +PE L+ + ++ D++S G+ + E+ +
Sbjct: 159 MANSFVGTRS------------YMSPERLQGTHYSVQ----SDIWSMGLSLVEMAV 198
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/176 (18%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 43 IELKSKSVDHLLQLQGLRHENLNPFI----GFLWDPTGPALVWEFCCRGSLEDVLVQ-DE 97
+E+K + +++ + HE +P+I G + ++ E GSL+ VL +
Sbjct: 41 LEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR 100
Query: 98 IKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL------- 150
I ++S+ +++G+ YL +H ++ N ++++R +K+ D+ +
Sbjct: 101 IPEQILGKVSIA--VIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS 158
Query: 151 --NSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
NSF ++ + +PE L+ + ++ D++S G+ + E+ +
Sbjct: 159 MANSFVGTRS------------YMSPERLQGTHYSVQ----SDIWSMGLSLVEMAV 198
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/176 (18%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 43 IELKSKSVDHLLQLQGLRHENLNPFI----GFLWDPTGPALVWEFCCRGSLEDVLVQ-DE 97
+E+K + +++ + HE +P+I G + ++ E GSL+ VL +
Sbjct: 41 LEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR 100
Query: 98 IKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL------- 150
I ++S+ +++G+ YL +H ++ N ++++R +K+ D+ +
Sbjct: 101 IPEQILGKVSIA--VIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS 158
Query: 151 --NSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
NSF ++ + +PE L+ + ++ D++S G+ + E+ +
Sbjct: 159 MANSFVGTRS------------YMSPERLQGTHYSVQ----SDIWSMGLSLVEMAV 198
>pdb|2WZN|A Chain A, 3d Structure Of Tet3 From Pyrococcus Horikoshii
Length = 354
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 180 EAHRLRGSQPGDVYSFGIIIQEVVLQGLRHEN--LNPFIGFLWDPT 223
EA R G D+Y G + +EV L+G R + +NP +G D T
Sbjct: 195 EAARQLGDHEADIYIVGSVQEEVGLRGARVASYAINPEVGIAMDVT 240
>pdb|2PE3|A Chain A, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
pdb|2PE3|B Chain B, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
pdb|2PE3|C Chain C, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
pdb|2PE3|D Chain D, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
Length = 354
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 180 EAHRLRGSQPGDVYSFGIIIQEVVLQGLRHEN--LNPFIGFLWDPT 223
EA R G D+Y G + +EV L+G R + +NP +G D T
Sbjct: 195 EAARQLGDHEADIYIVGSVQEEVGLRGARVASYAINPEVGIAMDVT 240
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/176 (18%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 43 IELKSKSVDHLLQLQGLRHENLNPFI----GFLWDPTGPALVWEFCCRGSLEDVLVQ-DE 97
+E+K + +++ + HE +P+I G + ++ E GSL+ VL +
Sbjct: 68 LEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR 127
Query: 98 IKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL------- 150
I ++S+ +++G+ YL +H ++ N ++++R +K+ D+ +
Sbjct: 128 IPEQILGKVSIA--VIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS 185
Query: 151 --NSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
NSF ++ + +PE L+ + ++ D++S G+ + E+ +
Sbjct: 186 MANSFVGTRS------------YMSPERLQGTHYSVQ----SDIWSMGLSLVEMAV 225
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/176 (18%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 43 IELKSKSVDHLLQLQGLRHENLNPFI----GFLWDPTGPALVWEFCCRGSLEDVLVQ-DE 97
+E+K + +++ + HE +P+I G + ++ E GSL+ VL +
Sbjct: 41 LEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR 100
Query: 98 IKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL------- 150
I ++S+ +++G+ YL +H ++ N ++++R +K+ D+ +
Sbjct: 101 IPEQILGKVSIA--VIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS 158
Query: 151 --NSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
NSF ++ + +PE L+ + ++ D++S G+ + E+ +
Sbjct: 159 MANSFVGTRS------------YMSPERLQGTHYSVQ----SDIWSMGLSLVEMAV 198
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/176 (18%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 43 IELKSKSVDHLLQLQGLRHENLNPFI----GFLWDPTGPALVWEFCCRGSLEDVLVQ-DE 97
+E+K + +++ + HE +P+I G + ++ E GSL+ VL +
Sbjct: 41 LEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR 100
Query: 98 IKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL------- 150
I ++S+ +++G+ YL +H ++ N ++++R +K+ D+ +
Sbjct: 101 IPEQILGKVSIA--VIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS 158
Query: 151 --NSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
NSF ++ + +PE L+ + ++ D++S G+ + E+ +
Sbjct: 159 MANSFVGTRS------------YMSPERLQGTHYSVQ----SDIWSMGLSLVEMAV 198
>pdb|3LG3|A Chain A, 1.4a Crystal Structure Of Isocitrate Lyase From Yersinia
Pestis Co92
pdb|3LG3|B Chain B, 1.4a Crystal Structure Of Isocitrate Lyase From Yersinia
Pestis Co92
Length = 435
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 111 DLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYD 155
DL R+ +V + G L + NC W +TD + SF D
Sbjct: 295 DLALAKRFADAVHAQFPGKLLAYNCSPSFNWKKNLTDQQIASFQD 339
>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
pdb|3SLS|B Chain B, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
Length = 304
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/176 (18%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 43 IELKSKSVDHLLQLQGLRHENLNPFI----GFLWDPTGPALVWEFCCRGSLEDVLVQ-DE 97
+E+K + +++ + HE +P+I G + ++ E GSL+ VL +
Sbjct: 60 LEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR 119
Query: 98 IKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYAL------- 150
I ++S+ +++G+ YL +H ++ N ++++R +K+ D+ +
Sbjct: 120 IPEQILGKVSIA--VIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS 177
Query: 151 --NSFYDAQNIPPRQKTARELLWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVL 204
NSF ++ + +PE L+ + ++ D++S G+ + E+ +
Sbjct: 178 MANSFVGTRS------------YMSPERLQGTHYSVQ----SDIWSMGLSLVEMAV 217
>pdb|3VKF|A Chain A, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|B Chain B, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 585
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 18/138 (13%)
Query: 155 DAQNIPPRQKTARELL----WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG---L 207
D N R+KT L W AP + + H GS P Y+F Q +
Sbjct: 412 DRHNPETRRKTLLALFTDHQWVAPAVATADLHSNFGS-PTYFYAFYHHCQTDQVPAWADA 470
Query: 208 RHENLNPFIGFLWDPT-GPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTD----LVR 262
H + P++ L P GP + F C S DV++ + WT + D + +
Sbjct: 471 AHGDEVPYV--LGIPMIGPTEL--FPCNFSKNDVMLSAVVMTYWT-NFAKTGDPNQPVPQ 525
Query: 263 GMRYLHSVPHRLHELLWT 280
+++H+ P+R E+ WT
Sbjct: 526 DTKFIHTKPNRFEEVAWT 543
>pdb|3B3Q|A Chain A, Crystal Structure Of A Synaptic Adhesion Complex
pdb|3B3Q|B Chain B, Crystal Structure Of A Synaptic Adhesion Complex
Length = 577
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 18/138 (13%)
Query: 155 DAQNIPPRQKTARELL----WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG---L 207
D N R+KT L W AP + + H GS P Y+F Q +
Sbjct: 407 DRHNPETRRKTLLALFTDHQWVAPAVATADLHSNFGS-PTYFYAFYHHCQTDQVPAWADA 465
Query: 208 RHENLNPFIGFLWDPT-GPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTD----LVR 262
H + P++ L P GP + F C S DV++ + WT + D + +
Sbjct: 466 AHGDEVPYV--LGIPMIGPTEL--FPCNFSKNDVMLSAVVMTYWT-NFAKTGDPNQPVPQ 520
Query: 263 GMRYLHSVPHRLHELLWT 280
+++H+ P+R E+ WT
Sbjct: 521 DTKFIHTKPNRFEEVAWT 538
>pdb|3BIW|A Chain A, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|B Chain B, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|C Chain C, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|D Chain D, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIX|A Chain A, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|B Chain B, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|C Chain C, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|D Chain D, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
Length = 574
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 18/138 (13%)
Query: 155 DAQNIPPRQKTARELL----WTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVLQG---L 207
D N R+KT L W AP + + H GS P Y+F Q +
Sbjct: 395 DRHNPETRRKTLLALFTDHQWVAPAVATADLHSNFGS-PTYFYAFYHHCQTDQVPAWADA 453
Query: 208 RHENLNPFIGFLWDPT-GPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTD----LVR 262
H + P++ L P GP + F C S DV++ + WT + D + +
Sbjct: 454 AHGDEVPYV--LGIPMIGPTEL--FPCNFSKNDVMLSAVVMTYWT-NFAKTGDPNQPVPQ 508
Query: 263 GMRYLHSVPHRLHELLWT 280
+++H+ P+R E+ WT
Sbjct: 509 DTKFIHTKPNRFEEVAWT 526
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
LRH L D +++EF G L + + + K+ + + + +G+ +
Sbjct: 105 LRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCH 164
Query: 119 LHSVPHRLHGNLTSRNCVIDARWV--LKITDYALNSFYD-AQNIPPRQKTARELLWTAPE 175
+H + +H +L N + + LK+ D+ L + D Q++ TA + APE
Sbjct: 165 MHENNY-VHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAE---FAAPE 220
Query: 176 LLRDEAHRLRGSQPG---DVYSFGIIIQEVVLQGLRHENLNPFIGFLWDPT 223
+ G G D++S G ++ ++L G L+PF G D T
Sbjct: 221 V-------AEGKPVGYYTDMWSVG-VLSYILLSG-----LSPFGGENDDET 258
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 58/162 (35%), Gaps = 61/162 (37%)
Query: 207 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVL----VQDEIKLDWTFRLSLLTDLVR 262
L+H N+ G LV EF G L VL + +I ++W +++ R
Sbjct: 63 LKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIA------R 116
Query: 263 GMRYLHS---VP--------------------------------------HRLHEL---- 277
GM YLH VP HR ++
Sbjct: 117 GMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAG 176
Query: 278 --LWTAPELLRDEAHRLRGSQPGDVYSFGIIIQEVVVRGEPF 317
W APE++R S+ DV+S+G+++ E++ PF
Sbjct: 177 AYAWMAPEVIRASMF----SKGSDVWSYGVLLWELLTGEVPF 214
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/191 (17%), Positives = 85/191 (44%), Gaps = 27/191 (14%)
Query: 23 KARYNGDLVQMKPVPLHGNTIELKSKSVDHLLQLQGLRHENLNPFIGFLWDPTGPALVWE 82
K+ +G +K + + + + + +S + L ++H N+ + + +V +
Sbjct: 44 KSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103
Query: 83 FCCRGSL-------EDVLVQDEIKLDWTFRLSLLTDLVRGMRYLHSVPHRLHGNLTSRNC 135
+C G L + VL Q++ LDW ++ L ++++H LH ++ S+N
Sbjct: 104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICL------ALKHVHD-RKILHRDIKSQNI 156
Query: 136 VIDARWVLKITDYALNSFYDAQNIPPRQKTARELLWT----APELLRDEAHRLRGSQPGD 191
+ +++ D+ + A+ + + AR + T +PE+ ++ + + D
Sbjct: 157 FLTKDGTVQLGDFGI-----ARVLNSTVELARACIGTPYYLSPEICENKPY----NNKSD 207
Query: 192 VYSFGIIIQEV 202
+++ G ++ E+
Sbjct: 208 IWALGCVLYEL 218
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 59 LRHENLNPFIGFLWDPTGPALVWEFCCRGSLEDVLVQDEIKLDWTFRLSLLTDLVRGMRY 118
LRH L D +++EF G L + + + K+ + + + +G+ +
Sbjct: 211 LRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCH 270
Query: 119 LHSVPHRLHGNLTSRNCVIDARWV--LKITDYALNSFYD-AQNIPPRQKTARELLWTAPE 175
+H + +H +L N + + LK+ D+ L + D Q++ TA + APE
Sbjct: 271 MHENNY-VHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAE---FAAPE 326
Query: 176 LLRDEAHRLRGSQPG---DVYSFGIIIQEVVLQGLRHENLNPFIGFLWDPT 223
+ G G D++S G ++ ++L G L+PF G D T
Sbjct: 327 V-------AEGKPVGYYTDMWSVG-VLSYILLSG-----LSPFGGENDDET 364
>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 112 LVRGMRYLHSVPHRLHGNLTSRNCVIDARWVLKITDYALNSFYDAQNIPPRQKTARELLW 171
+V YLHS+ ++ +L N +ID + +K+TD+ L R K L
Sbjct: 150 IVLTFEYLHSL-DLIYRDLKPENLMIDQQGYIKVTDFGL---------AKRVKGRTWXLC 199
Query: 172 TAPELLRDEAHRLRG-SQPGDVYSFGIIIQEVV 203
PE L E +G ++ D ++ G++I E+
Sbjct: 200 GTPEYLAPEIILSKGYNKAVDWWALGVLIYEMA 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,147,051
Number of Sequences: 62578
Number of extensions: 475252
Number of successful extensions: 2052
Number of sequences better than 100.0: 574
Number of HSP's better than 100.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 443
Number of HSP's that attempted gapping in prelim test: 1142
Number of HSP's gapped (non-prelim): 1088
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)