BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13822
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 225
Score = 103 bits (256), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 68/111 (61%), Gaps = 2/111 (1%)
Query: 3 VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDA 62
V + F VT+ FSDIVGFT I + +P +V+ +LN LYT FD +VYKVETIGDA
Sbjct: 7 VQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDA 66
Query: 63 YMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
Y V GGL HA QIA MAL ++ S H P+++RIGLH+G
Sbjct: 67 YCVAGGLHKESDTHAVQIALMALKMMELSDEVMSPH--GEPIKMRIGLHSG 115
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 73/115 (63%), Gaps = 3/115 (2%)
Query: 10 EVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY-NVYKVETIGDAYMVVGG 68
E T+ FSDIVGFT I++ S+P EV LL++LY FDA I Y +YKVETIGDAYMVV
Sbjct: 9 EATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCN 68
Query: 69 LPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK 123
+ V DHAD + AL + H ++ P+R+R+G+H+G V+ + +K
Sbjct: 69 VTVPCDDHADVLLEFALRM--HEEASRVASSLGEPVRIRVGMHSGPVVAGVVGRK 121
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 73/115 (63%), Gaps = 3/115 (2%)
Query: 10 EVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY-NVYKVETIGDAYMVVGG 68
E T+ FSDIVGFT I++ S+P EV LL++LY FDA I Y +YKVETIGDAYMVV
Sbjct: 9 EATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCN 68
Query: 69 LPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK 123
+ V DHAD + AL + H ++ P+R+R+G+H+G V+ + +K
Sbjct: 69 VTVPCDDHADVLLEFALRM--HEEASRVASSLGEPVRIRVGMHSGPVVAGVVGRK 121
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 6 EDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMV 65
+ + E ++ F+DIVGFT ++ + P ++V L+ LY+ FD ++ + + K+E GD+YMV
Sbjct: 6 DKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMV 65
Query: 66 VGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
V G+P PDH +A ALD+ + + + K P+ LR+GL TG
Sbjct: 66 VSGVPRPRPDHTQALADFALDMTNVAAQLKDPR--GNPVPLRVGLATG 111
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 69/123 (56%), Gaps = 10/123 (8%)
Query: 2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFE----VVDLLNDLYTCFDATINAYN---VY 54
PV + + VTI FS IVGF + E +V+LLNDLYT FD ++ VY
Sbjct: 4 PVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVY 63
Query: 55 KVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGR 114
KVET+GD YM V GLP HA I +ALD++ +G+ ++ +++ IG+HTG
Sbjct: 64 KVETVGDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVDG---ESVQITIGIHTGE 120
Query: 115 PVS 117
V+
Sbjct: 121 VVT 123
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFE----VVDLLNDLYTCFDATINAYN---VY 54
PV + + VTI FS IVGF + E +V+LLNDLYT FD ++ VY
Sbjct: 5 PVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVY 64
Query: 55 KVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGR 114
KVET+ D YM V GLP HA I +ALD++ +G+ ++ +++ IG+HTG
Sbjct: 65 KVETVCDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVDG---ESVQITIGIHTGE 121
Query: 115 PVS 117
V+
Sbjct: 122 VVT 124
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 11 VTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLP 70
V+I F+DI GFT++++ T E+V LN+L+ FD + +++ +GD Y V GLP
Sbjct: 27 VSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLP 86
Query: 71 VRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGR 114
DHA M +D++ +R + + +R+G+H+GR
Sbjct: 87 EARADHAHCCVEMGMDMIEAISL--VREMTGVNVNMRVGIHSGR 128
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 11 VTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLP 70
V+I F+DI GFT++++ T E+V LN+L+ FD + +++ +GD Y V GLP
Sbjct: 35 VSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLP 94
Query: 71 VRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGR 114
DHA M +D++ +R + + +R+G+H+GR
Sbjct: 95 EARADHAHCCVEMGMDMIEAISL--VREMTGVNVNMRVGIHSGR 136
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 11 VTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLP 70
V+I F+DI GFT++++ T E+V LN+L+ FD + +++ +GD Y V GLP
Sbjct: 35 VSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLP 94
Query: 71 VRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGR 114
DHA M +D++ +R + + +R+G+H+GR
Sbjct: 95 EARADHAHCCVEMGMDMI--EAISLVREMTGVNVNMRVGIHSGR 136
>pdb|2W01|A Chain A, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|B Chain B, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|C Chain C, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|D Chain D, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|E Chain E, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|F Chain F, Crystal Structure Of The Guanylyl Cyclase Cya2
Length = 208
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 7 DFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVV 66
D R +TI SD+ GFT+ S P EVV +LN + I + E +GD +V+
Sbjct: 11 DRRPITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEFMGDGILVL 70
Query: 67 GGLPVRIPDHADQIATMALD--LLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK 123
G P D A + ++ L ++ L PL + IG++TG V ++ +
Sbjct: 71 FGAPTSQQDDALRAVACGVEMQLALREVNQQVTGLGLQPLEMGIGINTGEVVVGNIGSE 129
>pdb|3R5G|A Chain A, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
pdb|3R5G|B Chain B, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
Length = 198
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGG 68
+++T++FSDI GFT +S + DLLN+ Y + +GD MV G
Sbjct: 8 KKLTVFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKFVGDCVMVFFG 67
Query: 69 LPVRIPDHADQIA--TMALDLLHHSG--RFKIRHLPYT-PLRLRIGLHTG 113
P D +A +M + + H R + R T PL +R+G++TG
Sbjct: 68 DPSTQGAKKDAVAAVSMGIAMRKHMKVLRQQWRAQGITKPLEIRMGINTG 117
>pdb|1WC0|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp
pdb|1WC0|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp
pdb|1WC3|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Strontium
pdb|1WC3|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Strontium
pdb|1WC4|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Europium
pdb|1WC4|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Europium
pdb|1WC5|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|D Chain D, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|2BW7|A Chain A, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|B Chain B, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|C Chain C, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|D Chain D, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
Length = 219
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATI--NAYNVYKVETIGDAYMVV 66
R +TI FSDIVGFT +S V +LLN+ + N V K +GDA M +
Sbjct: 26 RLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKF--VGDAIMAL 83
Query: 67 GGLPVRIPDHAD---QIAT-----MALDLLHHSGRFK--IRHLPYTPLRLRIGLHTGRPV 116
G P + IAT +AL+ L+ + + + P+R R G+H G V
Sbjct: 84 YGAPEEMSPSEQVRRAIATARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQGMAV 143
>pdb|1WC1|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas
pdb|1WC1|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas
pdb|1WC1|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas
pdb|1WC6|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas In Presence Of Bicarbonate
pdb|1WC6|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas In Presence Of Bicarbonate
pdb|1WC6|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas In Presence Of Bicarbonate
Length = 226
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATI--NAYNVYKVETIGDAYMVV 66
R +TI FSDIVGFT +S V +LLN+ + N V K +GDA M +
Sbjct: 33 RLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKF--VGDAIMAL 90
Query: 67 GGLPVRIPDHAD---QIAT-----MALDLLHHSGRFK--IRHLPYTPLRLRIGLHTGRPV 116
G P + IAT +AL+ L+ + + + P+R R G+H G V
Sbjct: 91 YGAPEEMSPSEQVRRAIATARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQGMAV 150
>pdb|1Y10|A Chain A, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|B Chain B, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|C Chain C, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|D Chain D, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y11|A Chain A, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme, Active
State
Length = 407
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 18/112 (16%)
Query: 9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGG 68
R+VT+ F+D+VGFT + + E+ L L + A V+ ++TIGDA M+V
Sbjct: 214 RQVTVAFADLVGFTQLGEVVSAEELGHLAGRL-AGLARDLTAPPVWFIKTIGDAVMLV-- 270
Query: 69 LPVRIPDHADQIATM--ALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSK 118
PD A + T+ ++++ F RLR G+ +G VS+
Sbjct: 271 ----CPDPAPLLDTVLKLVEVVDTDNNFP---------RLRAGVASGMAVSR 309
>pdb|1FX2|A Chain A, Structural Analysis Of Adenylate Cyclases From Trypanosoma
Brucei In Their Monomeric State
Length = 235
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 39/142 (27%)
Query: 2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
P DP VT+ F+DI T + A + P + D + + + I Y Y+V+T+GD
Sbjct: 9 PTDP-----VTLIFTDIESSTALWA-AHPDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGD 62
Query: 62 AYMVVGGLPVRIPDHADQIATMALDLLHHSG----------RFKIR----HLPYTP---- 103
++M+ P A + + L LHH F+ + YTP
Sbjct: 63 SFMIASKSPFAAVQLAQE---LQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTPPTAH 119
Query: 104 ------------LRLRIGLHTG 113
LR+R+G+HTG
Sbjct: 120 MDPEVYSRLWNGLRVRVGIHTG 141
>pdb|1FX4|A Chain A, Structure Analysis Of Adenylate Cyclases From Trypanosoma
Brucei In Their Monomeric State
Length = 231
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 28/130 (21%)
Query: 11 VTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLP 70
VT+ F+DI T + A + P + D + + + I Y Y+V+T+GD++M+ P
Sbjct: 13 VTLIFTDIESSTALWA-AHPDLMPDAVATHHRLIRSLITRYECYEVKTVGDSFMIASKSP 71
Query: 71 VRIPDHAD--QIATMALDLLHHSGRFKIRHL---------PYTP---------------- 103
A Q+ + LD ++ R YTP
Sbjct: 72 FAAVQLAQELQLCFLRLDWETNAVDESYREFEEQRAEGECEYTPPTASLDPEVYSRLWNG 131
Query: 104 LRLRIGLHTG 113
LR+R+G+HTG
Sbjct: 132 LRVRVGIHTG 141
>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
pdb|1AB8|B Chain B, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
Length = 220
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 31 FEVVDLLNDLYTCFDATINA---YNVYKVETIGDAYMVVGGLPVRIP--DHADQ------ 79
E + LLN++ FD ++ V K++TIG YM GL IP +HA +
Sbjct: 39 LECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSA-IPSQEHAQEPERQYM 97
Query: 80 -IATMALDLLHHSGRF-KIRHLPYTPLRLRIGLHTG 113
I TM G+ I + +LR+G++ G
Sbjct: 98 HIGTMVEFAYALVGKLDAINKHSFNDFKLRVGINHG 133
>pdb|1AZS|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1CJK|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CS4|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1TL7|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
pdb|1U0H|B Chain B, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|B Chain B, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|B Chain B, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 212
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 31 FEVVDLLNDLYTCFDATINA---YNVYKVETIGDAYMVVGGLPVRIP--DHADQ------ 79
E + LLN++ FD ++ V K++TIG YM GL IP +HA +
Sbjct: 40 LECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSA-IPSQEHAQEPERQYM 98
Query: 80 -IATMALDLLHHSGRF-KIRHLPYTPLRLRIGLHTG 113
I TM G+ I + +LR+G++ G
Sbjct: 99 HIGTMVEFAYALVGKLDAINKHSFNDFKLRVGINHG 134
>pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 208
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 31 FEVVDLLNDLYTCFDATINA---YNVYKVETIGDAYMVVGGLPVRIP--DHADQ------ 79
E + LLN++ FD ++ V K++TIG YM GL IP +HA +
Sbjct: 36 LECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSA-IPSQEHAQEPERQYM 94
Query: 80 -IATMALDLLHHSGRF-KIRHLPYTPLRLRIGLHTG 113
I TM G+ I + +LR+G++ G
Sbjct: 95 HIGTMVEFAYALVGKLDAINKHSFNDFKLRVGINHG 130
>pdb|1NNW|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608
pdb|1NNW|B Chain B, Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608
Length = 252
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 6 EDFREVTIYF--SDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAY 63
E+ E+ Y+ +IVG + P EV++++ DL + I ++ + D +
Sbjct: 29 EEGYEIEKYYILGNIVGL-----FPYPKEVIEVIKDLTKKENVKIIRGKYDQIIAMSDPH 83
Query: 64 MVVGGL--PVRIPDHADQIATMALDLLHHSGRFKIRHLP 100
G + +P H + + L H GR +R LP
Sbjct: 84 ATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLP 122
>pdb|2X2B|A Chain A, Crystal Structure Of Malonyl-Acp (Acyl Carrier Protein)
From Bacillus Subtilis
Length = 78
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 28 STPFEVVDLLNDLYTCFDATINAYNVYKVETIGDA 62
+ +VV+L+ +L FD I+ + K+ T+GDA
Sbjct: 36 ADSLDVVELVMELEDEFDMEISDEDAEKIATVGDA 70
>pdb|1HY8|A Chain A, Solution Structure Of B. Subtilis Acyl Carrier Protein
Length = 76
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 28 STPFEVVDLLNDLYTCFDATINAYNVYKVETIGDA 62
+ +VV+L+ +L FD I+ + K+ T+GDA
Sbjct: 34 ADSLDVVELVMELEDEFDMEISDEDAEKIATVGDA 68
>pdb|1F80|D Chain D, Holo-(Acyl Carrier Protein) Synthase In Complex With
Holo- (Acyl Carrier Protein)
pdb|1F80|E Chain E, Holo-(Acyl Carrier Protein) Synthase In Complex With
Holo- (Acyl Carrier Protein)
pdb|1F80|F Chain F, Holo-(Acyl Carrier Protein) Synthase In Complex With
Holo- (Acyl Carrier Protein)
Length = 81
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 31 FEVVDLLNDLYTCFDATINAYNVYKVETIGDA 62
+VV+L+ +L FD I+ + K+ T+GDA
Sbjct: 42 LDVVELVMELEDEFDMEISDEDAEKIATVGDA 73
>pdb|2WCD|A Chain A, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|B Chain B, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|C Chain C, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|D Chain D, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|E Chain E, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|F Chain F, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|G Chain G, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|H Chain H, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|I Chain I, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|J Chain J, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|K Chain K, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|L Chain L, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|M Chain M, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|N Chain N, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|O Chain O, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|P Chain P, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|Q Chain Q, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|R Chain R, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|S Chain S, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|T Chain T, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|U Chain U, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|V Chain V, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|W Chain W, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|X Chain X, Crystal Structure Of The Assembled Cytolysin A Pore
Length = 309
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 16 SDIVGFTTISAYSTPFEVVDLLNDLYT----------CFDATINAYNVYKVETIGDAYMV 65
++IV T+ E D DLY FD TI + +K E A ++
Sbjct: 8 TEIVADKTVEVVKNAIETADGALDLYNKYLDQVIPWQTFDETIKELSRFKQEYSQAASVL 67
Query: 66 VGGLPVRIPDHADQ 79
VG + + D D+
Sbjct: 68 VGDIKTLLMDSQDK 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.143 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,953,328
Number of Sequences: 62578
Number of extensions: 149681
Number of successful extensions: 461
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 28
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)