Query psy13822
Match_columns 123
No_of_seqs 140 out of 1157
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 21:21:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uvj_A Guanylate cyclase solub 100.0 1.2E-33 4E-38 193.3 11.5 120 2-123 6-125 (225)
2 1azs_A VC1; complex (lyase/hyd 100.0 2.7E-33 9.2E-38 190.9 12.9 120 2-123 26-145 (220)
3 3et6_A Soluble guanylyl cyclas 100.0 1.7E-32 5.9E-37 182.9 14.6 120 2-123 1-121 (190)
4 2wz1_A Guanylate cyclase solub 100.0 7.4E-33 2.5E-37 188.7 12.2 119 2-123 4-129 (219)
5 2w01_A Adenylate cyclase; guan 100.0 4.6E-32 1.6E-36 183.3 15.6 118 5-122 9-128 (208)
6 1ab8_A Adenylyl cyclase; lyase 100.0 5.2E-32 1.8E-36 184.6 13.8 120 2-123 6-143 (220)
7 3r5g_A CYAB; adenylyl cyclase, 100.0 7.7E-32 2.6E-36 180.7 13.6 119 5-123 4-127 (198)
8 1yk9_A Adenylate cyclase; beta 100.0 1.9E-33 6.4E-38 189.8 5.3 119 2-122 2-120 (204)
9 1wc3_A Adenylate cyclase; solu 100.0 3.2E-31 1.1E-35 180.5 14.1 119 4-122 21-149 (219)
10 1ybt_A Hydrolase, alpha/beta h 100.0 3.8E-29 1.3E-33 166.3 9.5 105 3-122 10-114 (184)
11 3mr7_A Adenylate/guanylate cyc 100.0 1.7E-27 5.9E-32 158.7 13.0 107 4-118 1-108 (189)
12 1fx2_A Receptor-type adenylate 99.9 1.7E-27 5.8E-32 163.4 10.5 113 2-122 4-150 (235)
13 1y10_A Hypothetical protein RV 99.9 3.6E-25 1.2E-29 162.1 11.7 101 5-119 210-310 (407)
14 2qv6_A MJ0145, GTP cyclohydrol 97.6 0.0011 3.8E-08 45.9 10.0 61 7-67 128-189 (268)
15 3i5c_A Fusion of general contr 97.4 0.001 3.5E-08 43.4 8.1 99 8-111 59-160 (206)
16 3hva_A Protein FIMX; ggdef dig 97.3 0.0012 4.2E-08 41.9 7.7 99 8-112 42-141 (177)
17 3mtk_A Diguanylate cyclase/pho 97.3 0.002 6.9E-08 41.2 8.1 96 8-112 34-129 (178)
18 3tvk_A DGC, diguanylate cyclas 97.2 0.0013 4.4E-08 42.9 7.0 98 8-111 31-129 (179)
19 3icl_A EAL/ggdef domain protei 97.2 0.00092 3.1E-08 42.3 6.0 60 8-68 28-87 (171)
20 3ign_A Diguanylate cyclase; gg 97.1 0.0027 9.1E-08 40.4 7.3 99 8-112 37-136 (177)
21 3pjx_A Cyclic dimeric GMP bind 97.1 0.0074 2.5E-07 44.0 10.4 100 8-112 46-148 (430)
22 3hvw_A Diguanylate-cyclase (DG 97.0 0.0019 6.4E-08 41.4 5.7 97 9-112 26-125 (176)
23 3qyy_A Response regulator; C-D 96.9 0.0086 3E-07 37.6 8.1 58 9-67 41-98 (167)
24 3ezu_A Ggdef domain protein; m 96.8 0.0089 3E-07 42.6 8.8 98 8-114 211-308 (342)
25 3bre_A Probable two-component 96.3 0.022 7.7E-07 40.1 8.2 60 9-68 201-260 (358)
26 1w25_A Stalked-cell differenti 95.9 0.047 1.6E-06 39.9 8.3 98 9-112 318-418 (459)
27 3hvb_A Protein FIMX; EAL phosp 92.5 0.023 7.9E-07 41.5 0.0 60 8-68 42-101 (437)
28 3ung_C CMR2DHD; ferredoxin fol 91.6 2.7 9.3E-05 32.8 10.3 55 31-94 465-520 (693)
29 2qv6_A MJ0145, GTP cyclohydrol 89.7 3.7 0.00013 28.4 9.8 57 13-69 4-63 (268)
30 2diu_A KIAA0430 protein; struc 80.0 4.9 0.00017 23.3 4.9 36 25-67 18-53 (96)
31 1ufw_A Synaptojanin 2; RNP dom 68.7 14 0.00049 21.3 5.6 28 40-67 37-65 (95)
32 1whv_A Poly(A)-specific ribonu 65.9 7.6 0.00026 22.7 3.3 26 42-67 30-56 (100)
33 3ctr_A Poly(A)-specific ribonu 64.8 8.8 0.0003 22.4 3.5 28 42-69 20-48 (101)
34 1v6t_A Hypothetical UPF0271 pr 58.2 15 0.00053 25.1 4.3 49 15-63 65-113 (255)
35 1xw8_A UPF0271 protein YBGL; N 56.6 17 0.00057 24.9 4.2 50 15-64 60-109 (252)
36 2dnr_A Synaptojanin-1; RRM dom 53.4 27 0.00092 19.9 4.2 27 41-67 29-56 (91)
37 2x5e_A UPF0271 protein PA4511; 51.0 15 0.00051 25.1 3.3 49 15-63 71-119 (252)
38 2dfa_A Hypothetical UPF0271 pr 49.5 15 0.0005 25.1 3.1 49 15-63 65-113 (250)
39 2qn6_B Translation initiation 41.2 49 0.0017 18.8 4.3 29 27-55 60-88 (93)
40 3lmb_A Uncharacterized protein 35.9 80 0.0027 19.8 5.2 44 26-69 3-46 (165)
41 1xhj_A Nitrogen fixation prote 35.6 60 0.0021 18.2 6.4 39 32-70 7-47 (88)
42 2ctj_A Vigilin; K homology typ 34.3 45 0.0015 18.9 3.2 65 18-90 13-81 (95)
43 2xgv_A PSIV capsid N-terminal 33.8 30 0.001 21.4 2.4 21 19-39 38-58 (142)
44 2xde_A GAG polyprotein, HIV-1 33.1 32 0.0011 21.4 2.4 21 19-39 39-59 (145)
45 3ugs_B Undecaprenyl pyrophosph 32.6 1.1E+02 0.0038 20.4 10.4 82 9-113 52-135 (225)
46 2wlv_A GAG polyprotein, HIV-2 30.3 38 0.0013 21.0 2.4 21 19-39 37-57 (144)
47 2xvc_A ESCRT-III, SSO0910; cel 29.4 59 0.002 16.9 2.7 26 15-41 25-50 (59)
48 2xgu_A Relik capsid N-terminal 28.8 41 0.0014 21.0 2.4 21 19-39 38-58 (149)
49 3nrl_A Uncharacterized protein 27.6 25 0.00084 19.6 1.2 16 107-122 28-43 (81)
50 4h8e_A Undecaprenyl pyrophosph 27.5 1.5E+02 0.0051 20.2 9.8 82 9-113 70-153 (256)
51 3lo3_A Uncharacterized conserv 24.0 1E+02 0.0035 17.2 3.5 22 36-57 18-39 (94)
52 1vqs_A Hypothetical protein AG 23.5 46 0.0016 19.4 1.9 43 29-71 23-71 (116)
53 1mul_A NS2, HU-2, DNA binding 21.6 1.1E+02 0.0037 16.7 3.2 40 26-67 14-53 (90)
54 2o97_B NS1, HU-1, DNA-binding 21.3 1.1E+02 0.0038 16.7 3.2 39 27-67 15-53 (90)
55 2izx_A CAMP-dependent protein 20.7 12 0.00042 17.6 -0.9 20 27-46 20-39 (41)
No 1
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=193.28 Aligned_cols=120 Identities=46% Similarity=0.717 Sum_probs=111.8
Q ss_pred CCCCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHH
Q psy13822 2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIA 81 (123)
Q Consensus 2 ~~~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~ 81 (123)
+..+++++++||||+||+|||.+++.++|+++..+||+++..+++++.+|+|+++|++||++|++||.|....+|+.+|+
T Consensus 6 ~~~~~~~~~vtvlF~Di~gfT~l~~~~~~~~~~~~ln~~~~~~~~~i~~~~g~v~k~~GD~~ma~fg~p~~~~~~a~~a~ 85 (225)
T 3uvj_A 6 VVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDAYCVAGGLHKESDTHAVQIA 85 (225)
T ss_dssp EEEEEEEEEEEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCEEECCSTTCEEEEESSSSCCTTHHHHHH
T ss_pred ccCCcccceEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcCeEEEEeeCcEEEEEECCCCCchHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecCC
Q psy13822 82 TMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK 123 (123)
Q Consensus 82 ~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~~ 123 (123)
.+|++|++.+..++... ..++++|||||+|+|++|++|++
T Consensus 86 ~~al~~~~~~~~~~~~~--~~~l~~riGih~G~v~~G~iG~~ 125 (225)
T 3uvj_A 86 LMALKMMELSDEVMSPH--GEPIKMRIGLHSGSVFAGVVGVK 125 (225)
T ss_dssp HHHHHHHHHHTTSBCTT--SCBCCEEEEEEEEEEEEEEECC-
T ss_pred HHHHHHHHHHHHHHhhc--CCceEEEEEEEeccEEEEEecCC
Confidence 99999999998876543 46899999999999999999974
No 2
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A*
Probab=100.00 E-value=2.7e-33 Score=190.95 Aligned_cols=120 Identities=28% Similarity=0.492 Sum_probs=111.8
Q ss_pred CCCCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHH
Q psy13822 2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIA 81 (123)
Q Consensus 2 ~~~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~ 81 (123)
++..++++++||||+||+|||.+++.++|+++..+||+++..+++++.+|||+++|++||++|++||.|...++++.+|+
T Consensus 26 ~l~~~~~~~vtvlF~DI~gfT~l~e~~~~~~~~~~Ln~~~~~~~~~i~~~gG~v~k~iGD~~ma~fg~p~~~~~~a~~Av 105 (220)
T 1azs_A 26 KIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCV 105 (220)
T ss_dssp CCEEEEEEEEEEEEEEEETHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEETTEEEEEESCSSCCSTHHHHHH
T ss_pred cccccccccEEEEEEEccChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCeEEEEECCCCCChHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecCC
Q psy13822 82 TMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK 123 (123)
Q Consensus 82 ~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~~ 123 (123)
++|++|++.+..++... +.++++|||||+|+|++|++|++
T Consensus 106 ~~Al~m~~~l~~~~~~~--~~~l~irIGI~tG~v~~G~vG~~ 145 (220)
T 1azs_A 106 EMGMDMIEAISLVREMT--GVNVNMRVGIHSGRVHCGVLGLR 145 (220)
T ss_dssp HHHHHHHHHHHHHHHHH--CSCCEEEEEEEEEEEEEEECSSS
T ss_pred HHHHHHHHHHHHHHhhc--CCCcEEEEEEEEeEEEEEEeCCC
Confidence 99999999999887642 45899999999999999999964
No 3
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B
Probab=100.00 E-value=1.7e-32 Score=182.92 Aligned_cols=120 Identities=44% Similarity=0.734 Sum_probs=109.8
Q ss_pred CCCCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEeeeCcEEEEEeCCCCCCchHHHHH
Q psy13822 2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY-NVYKVETIGDAYMVVGGLPVRIPDHADQI 80 (123)
Q Consensus 2 ~~~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~-gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a 80 (123)
+.++++++++|+||+||+|||.+++.++|+++..+||+++..+++++.+| |++++|+.||++|++||.|....+|+.+|
T Consensus 1 ~~~~~e~~~vtvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~g~~~vk~~GD~~~a~fg~~~~~~~~~~~a 80 (190)
T 3et6_A 1 SAPAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCNVTVPCDDHADVL 80 (190)
T ss_dssp CCCCEEEEEEEEEEEEETTHHHHTTTSCHHHHHHHHHHHHHHHHHHGGGCTTEEEEECTTSCEEEEESSSSCCSTHHHHH
T ss_pred CCCccccceEEEEEeEecChhHhHhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeCCEEEEEECCCCCchhHHHHH
Confidence 45788999999999999999999999999999999999999999999999 77888999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecCC
Q psy13822 81 ATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK 123 (123)
Q Consensus 81 ~~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~~ 123 (123)
+++|++|++.+.+++.. ...++++|||||+|+|++|++|++
T Consensus 81 ~~~al~~~~~~~~~~~~--~~~~l~~riGi~~G~v~~g~vG~~ 121 (190)
T 3et6_A 81 LEFALRMHEEASRVASS--LGEPVRIRVGMHSGPVVAGVVGRK 121 (190)
T ss_dssp HHHHHHHHHHHHTSCCC-----CCCEEEEEEEEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHhc--cCCCceEEEEEEeccEEEEecCCC
Confidence 99999999999876543 345799999999999999999964
No 4
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Probab=100.00 E-value=7.4e-33 Score=188.67 Aligned_cols=119 Identities=40% Similarity=0.707 Sum_probs=111.2
Q ss_pred CCCCCceeeEEEEEeeccChhhhccCCC----HHHHHHHHHHHHHHHHHHHh---hcCeEEEeeeCcEEEEEeCCCCCCc
Q psy13822 2 PVDPEDFREVTIYFSDIVGFTTISAYST----PFEVVDLLNDLYTCFDATIN---AYNVYKVETIGDAYMVVGGLPVRIP 74 (123)
Q Consensus 2 ~~~~~~~~~~tvlf~di~~~t~l~~~~~----~~~~~~~l~~~~~~~~~~v~---~~gg~~~~~~Gd~~~~~fg~~~~~~ 74 (123)
+..+++++++||||+||+|||.+++.++ |+++..+||+++..+++++. .|+|+++|++||++|++||.|...+
T Consensus 4 ~~~~~~~~~vtvlF~DI~gfT~l~e~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~g~~~k~~GD~~ma~fg~p~~~~ 83 (219)
T 2wz1_A 4 PVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEPCI 83 (219)
T ss_dssp -CCCEEEEEEEEEEEEETTHHHHHHHSCCC--HHHHHHHHHHHHHHHHHHHCTTTCTTCEEECCCTTCEEEEESSSSCCT
T ss_pred ccCccceeeEEEEEEEccCcHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCEEEEeecCCEEEEEECCCCCCh
Confidence 5678999999999999999999999999 99999999999999999999 8899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecCC
Q psy13822 75 DHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK 123 (123)
Q Consensus 75 ~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~~ 123 (123)
+|+.+|++||++|++.+..++.. ..++++|||||+|+|++|++|++
T Consensus 84 ~~a~~A~~~Al~~~~~~~~~~~~---~~~l~~rIGi~~G~v~~G~iG~~ 129 (219)
T 2wz1_A 84 HHARSICHLALDMMEIAGQVQVD---GESVQITIGIHTGEVVTGVIGQR 129 (219)
T ss_dssp THHHHHHHHHHHHHHHHTTCEET---TEECCEEEEEEEEEEEEEEECSS
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc---CCceEEEEEEEEEEEEEEEeCCC
Confidence 99999999999999999987642 56899999999999999999974
No 5
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}
Probab=100.00 E-value=4.6e-32 Score=183.35 Aligned_cols=118 Identities=28% Similarity=0.345 Sum_probs=110.1
Q ss_pred CCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHH
Q psy13822 5 PEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMA 84 (123)
Q Consensus 5 ~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~a 84 (123)
..+++++|+||+||+|||.+++.++|+++..+||+++..+.+++.+|+|+++|++||++|++||.|...++|+.+|++||
T Consensus 9 ~~e~~~vtvlf~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~a~fg~p~~~~~~a~~Av~~A 88 (208)
T 2w01_A 9 GGDRRPITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEFMGDGILVLFGAPTSQQDDALRAVACG 88 (208)
T ss_dssp CCEEEEEEEEEEECTTHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSSSCCTTHHHHHHHHH
T ss_pred CCeEEEEEEEEEEecChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEcCEEEEEECCCCCChhHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhc--CCCCCceeEEEeeecCceeEEeecC
Q psy13822 85 LDLLHHSGRFKIR--HLPYTPLRLRIGLHTGRPVSKHLRK 122 (123)
Q Consensus 85 l~~~~~~~~~~~~--~~~~~~l~~rIGi~~G~v~~g~iG~ 122 (123)
++|++.+..++.. .....++++|||||+|+|++|++|+
T Consensus 89 l~~~~~l~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~ 128 (208)
T 2w01_A 89 VEMQLALREVNQQVTGLGLQPLEMGIGINTGEVVVGNIGS 128 (208)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCCCCEEEEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhhcCCCceEEEEEEEeeEEEEEEeCC
Confidence 9999999887652 2234579999999999999999996
No 6
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B*
Probab=100.00 E-value=5.2e-32 Score=184.55 Aligned_cols=120 Identities=23% Similarity=0.418 Sum_probs=108.0
Q ss_pred CCCCCceeeEEEEEeeccChhhhccCCC----HHHHHHHHHHHHHHHHHHHhhc---CeEEEeeeCcEEEEEeCCCC---
Q psy13822 2 PVDPEDFREVTIYFSDIVGFTTISAYST----PFEVVDLLNDLYTCFDATINAY---NVYKVETIGDAYMVVGGLPV--- 71 (123)
Q Consensus 2 ~~~~~~~~~~tvlf~di~~~t~l~~~~~----~~~~~~~l~~~~~~~~~~v~~~---gg~~~~~~Gd~~~~~fg~~~--- 71 (123)
++.+++++++||||+||+|||.+++.++ |+++..+||+++..+++++.+| ||+++|++||++|++||.|.
T Consensus 6 ~~~~~~~~~vtvlF~DI~gfT~l~~~l~~~~~p~~~~~~Ln~~~~~~~~~i~~~~~~g~~~ik~iGD~~ma~fg~p~~~~ 85 (220)
T 1ab8_A 6 ELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPS 85 (220)
T ss_dssp -CCEEEEEEEEEEEEECTTHHHHCCCSTTTTTTHHHHHHHHHHHHHHHGGGGSGGGTTEEEEEEETTEEEEEECCCCSCC
T ss_pred cccccccCcEEEEEEEccchHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeCceEEEEECCCcccc
Confidence 3567889999999999999999999875 7899999999999999999987 88999999999999999987
Q ss_pred --------CCchHHHHHHHHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecCC
Q psy13822 72 --------RIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK 123 (123)
Q Consensus 72 --------~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~~ 123 (123)
...+|+.+|+++|++|++.+..++.. ...++++|||||+|+|++|++|++
T Consensus 86 ~~~~~~~~~~~~~a~~a~~~Al~~~~~l~~~~~~--~~~~l~~rIGIh~G~v~~G~iG~~ 143 (220)
T 1ab8_A 86 QEHAQEPERQYMHIGTMVEFAYALVGKLDAINKH--SFNDFKLRVGINHGPVIAGVIGAQ 143 (220)
T ss_dssp C--------CCHHHHHHHHHHHHHHHHHHHHHTT--TTCCCCCEEEEEEEEEEEEEECSS
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHhhc--cCCceEEEEEEEeeeEEEEeecCC
Confidence 35789999999999999999988754 356899999999999999999964
No 7
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0
Probab=99.98 E-value=7.7e-32 Score=180.72 Aligned_cols=119 Identities=24% Similarity=0.342 Sum_probs=108.6
Q ss_pred CCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCC--chHHHHHHH
Q psy13822 5 PEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRI--PDHADQIAT 82 (123)
Q Consensus 5 ~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~--~~~~~~a~~ 82 (123)
..+++++|+||+||+|||.+++.++|+++..+|++++..+.+++++|||+++|+.||++|++||.|... .+++.+|++
T Consensus 4 ~~e~~~vtvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~a~fg~p~~~~~~~~a~~a~~ 83 (198)
T 3r5g_A 4 ETQRKKLTVFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKFVGDCVMVFFGDPSTQGAKKDAVAAVS 83 (198)
T ss_dssp CCEEEEEEEEEEEEETHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEETTEEEEEESSSSCSCHHHHHHHHHH
T ss_pred CceEEEEEEEEEEccccchhhhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeeeCCEEEEEECCCcccccHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999999999999999999876 689999999
Q ss_pred HHHHHHHHhhhhhhcCC---CCCceeEEEeeecCceeEEeecCC
Q psy13822 83 MALDLLHHSGRFKIRHL---PYTPLRLRIGLHTGRPVSKHLRKK 123 (123)
Q Consensus 83 ~al~~~~~~~~~~~~~~---~~~~l~~rIGi~~G~v~~g~iG~~ 123 (123)
+|++|++.+..++.... ...++++|||||+|++++|++|++
T Consensus 84 ~al~i~~~~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~ 127 (198)
T 3r5g_A 84 MGIAMRKHMKVLRQQWRAQGITKPLEIRMGINTGYCTVGNFGAD 127 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCSCCEEEEEEEEEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEEEEEEEEeCCC
Confidence 99999999988765321 235799999999999999999963
No 8
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis}
Probab=99.98 E-value=1.9e-33 Score=189.77 Aligned_cols=119 Identities=34% Similarity=0.631 Sum_probs=109.7
Q ss_pred CCCCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHH
Q psy13822 2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIA 81 (123)
Q Consensus 2 ~~~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~ 81 (123)
+..+++++++|+||+||+|||.+++.++|+++..+||+|+..+++++.+|||+++|++||++|++||.|...++|+.+|+
T Consensus 2 ~~~~~~~~~vtvlf~DI~gfT~l~~~~~~~~~~~~ln~~~~~~~~~i~~~gG~v~k~~GD~~ma~fg~p~~~~~~a~~A~ 81 (204)
T 1yk9_A 2 NIIADKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMVVSGVPRPRPDHTQALA 81 (204)
T ss_dssp ----CCCSCEEEEEEEESCSSCSSCCCCSSSTTTHHHHHHTTTTGGGTTSSCEECCCSSSCEEEESCCSSCCTTHHHHHH
T ss_pred CCCccccCcEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCeEEEEECCCCCChHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecC
Q psy13822 82 TMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRK 122 (123)
Q Consensus 82 ~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~ 122 (123)
++|++|++.+..++.. ...++++|||||+|+|++|++|+
T Consensus 82 ~~Al~~~~~~~~~~~~--~~~~l~~rIGI~tG~v~~g~vG~ 120 (204)
T 1yk9_A 82 DFALDMTNVAAQLKDP--RGNPVPLRVGLATGPVVAGVVGS 120 (204)
T ss_dssp THHHHHHHHTTTCCSS--SCCCCCEEEEEEEECEEECCCCS
T ss_pred HHHHHHHHHHHHHHhc--cCCCceEEEEEEeeEEEEEEecC
Confidence 9999999999988654 35689999999999999999996
No 9
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=99.97 E-value=3.2e-31 Score=180.51 Aligned_cols=119 Identities=26% Similarity=0.348 Sum_probs=107.8
Q ss_pred CCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCC--chHHHHHH
Q psy13822 4 DPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRI--PDHADQIA 81 (123)
Q Consensus 4 ~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~--~~~~~~a~ 81 (123)
...+++++|+||+||+|||.+++.++|+++..+||+|+..+.+++.+|+|++.|++||++|++||.|... .+++.+|+
T Consensus 21 l~~e~~~vtvlF~DI~gfT~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~gG~v~k~iGD~~ma~fg~p~~~~~~~~a~~Av 100 (219)
T 1wc3_A 21 MRPEPRLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAPEEMSPSEQVRRAI 100 (219)
T ss_dssp CCCEEEEEEEEEEEEESHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSSSCCCHHHHHHHHH
T ss_pred cCCceeEEEEEEEEecChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEcCeEEEEECCCCCCCChHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999999999999999999998753 47899999
Q ss_pred HHHHHHHHHhhhhhhcC--------CCCCceeEEEeeecCceeEEeecC
Q psy13822 82 TMALDLLHHSGRFKIRH--------LPYTPLRLRIGLHTGRPVSKHLRK 122 (123)
Q Consensus 82 ~~al~~~~~~~~~~~~~--------~~~~~l~~rIGi~~G~v~~g~iG~ 122 (123)
+||++|++.+..++... ....++++|||||+|+|++|++|+
T Consensus 101 ~~Al~~~~~l~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~ 149 (219)
T 1wc3_A 101 ATARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQGMAVVGLFGS 149 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSSTTCCCCEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCccEEEEEEEeceEEEEEcCC
Confidence 99999999998876421 234689999999999999999996
No 10
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A*
Probab=99.96 E-value=3.8e-29 Score=166.28 Aligned_cols=105 Identities=25% Similarity=0.293 Sum_probs=95.6
Q ss_pred CCCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHH
Q psy13822 3 VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIAT 82 (123)
Q Consensus 3 ~~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~ 82 (123)
.++.+++++||||+||+|||.+++.++|+++..+||+++..+++++.+|||+++|+.||++|++||.| .+|++
T Consensus 10 ~~~~~~~~~tvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~v~k~~GD~~ma~f~~p-------~~A~~ 82 (184)
T 1ybt_A 10 HGSAERMLATIMFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFTSP-------SAAIA 82 (184)
T ss_dssp ---CEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCSSSSEEEEESCH-------HHHHH
T ss_pred CCCCceEEEEEEEEECcCcHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeEeCCEEEEEeCCH-------HHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999765 47999
Q ss_pred HHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecC
Q psy13822 83 MALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRK 122 (123)
Q Consensus 83 ~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~ 122 (123)
+|++|++.+..+ ++++|||||+|++++|.+|.
T Consensus 83 ~Al~~~~~l~~~--------~l~~riGi~~G~v~~g~ig~ 114 (184)
T 1ybt_A 83 CADDIVDAVAAL--------GIEVRIGIHAGEVEVRDASH 114 (184)
T ss_dssp HHHHHHHHHHTT--------TCCEEEEEEEEEEEEEECSS
T ss_pred HHHHHHHHHHhc--------CCcEEEEEEEeEEEEEecCC
Confidence 999999988865 38999999999999998775
No 11
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}
Probab=99.95 E-value=1.7e-27 Score=158.65 Aligned_cols=107 Identities=17% Similarity=0.164 Sum_probs=95.0
Q ss_pred CCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHH-HHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHH
Q psy13822 4 DPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTC-FDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIAT 82 (123)
Q Consensus 4 ~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~-~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~ 82 (123)
.+.|++++|+||+||+|||.+++.++++.+ ..|++++.. +++++.+|||+++|+.||++|++||. +.+|++
T Consensus 1 s~~e~r~vtvlf~Di~gft~l~~~~~~~~~-~~l~~~~~~~~~~~i~~~~G~v~k~~GD~~~a~f~~-------~~~A~~ 72 (189)
T 3mr7_A 1 SNAERRLCAILAADMAGYSRLMERNETDVL-NRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDT-------AQAALR 72 (189)
T ss_dssp -CCEEEEEEEEEEEECCCCGGGCCCCHHHH-HHHHHHHHHTHHHHHHHTTCEEEEEETTEEEEEESS-------HHHHHH
T ss_pred CCCcEEEEEEEEEEchhhHHHHhhCCHHHH-HHHHHHHHHHHHHHHHHcCCEEEEEeCCEEEEEeCC-------HHHHHH
Confidence 367899999999999999999999998776 667777776 99999999999999999999999973 589999
Q ss_pred HHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEE
Q psy13822 83 MALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSK 118 (123)
Q Consensus 83 ~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g 118 (123)
||++|++.+..++.......++++|||||+|+|++|
T Consensus 73 ~Al~i~~~l~~~~~~~~~~~~l~~riGi~~G~v~~g 108 (189)
T 3mr7_A 73 CALEIQQAMQQREEDTPRKERIQYRIGINIGDIVLE 108 (189)
T ss_dssp HHHHHHHHHHHHTTTSCGGGCCCEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhhhcccCCceeEEEEEEEEEEEEE
Confidence 999999999998765544568999999999999997
No 12
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Probab=99.95 E-value=1.7e-27 Score=163.38 Aligned_cols=113 Identities=26% Similarity=0.321 Sum_probs=97.3
Q ss_pred CCCCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHH
Q psy13822 2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIA 81 (123)
Q Consensus 2 ~~~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~ 81 (123)
..++++++++||||+||+|||.+++.+ |+++..+|++++..+++++.+|||+++|++||++|++||.| .+|+
T Consensus 4 ~~~~~~~~~vtvlF~DI~gfT~l~~~~-~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~ma~fg~p-------~~A~ 75 (235)
T 1fx2_A 4 RAPKEPTDPVTLIFTDIESSTALWAAH-PDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASKSP-------FAAV 75 (235)
T ss_dssp GSCCCTTSCEEEEEEEETTHHHHHHHC-TTTHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCH-------HHHH
T ss_pred cCCCCCCCcEEEEEEeccChHHHHHHC-HHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCCeEEEEeCCH-------HHHH
Confidence 356788999999999999999999986 88999999999999999999999999999999999999875 4589
Q ss_pred HHHHHHHHHhhhhhhcC---------------------C-------------CCCceeEEEeeecCceeEEeecC
Q psy13822 82 TMALDLLHHSGRFKIRH---------------------L-------------PYTPLRLRIGLHTGRPVSKHLRK 122 (123)
Q Consensus 82 ~~al~~~~~~~~~~~~~---------------------~-------------~~~~l~~rIGi~~G~v~~g~iG~ 122 (123)
++|++|++.+...+... . ...++++|||||+|+|++|++|.
T Consensus 76 ~~Al~i~~~l~~~~w~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~riGIh~G~v~~G~~G~ 150 (235)
T 1fx2_A 76 QLAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTPPTAHMDPEVYSRLWNGLRVRVGIHTGLCDIRHDEV 150 (235)
T ss_dssp HHHHHHHHHHHHSCCSCSHHHHHHHHHHHHHHHHCSSCCCSSTTSCHHHHHHHCCSCCEEEEEEEECCEEEECTT
T ss_pred HHHHHHHHHHHhCCCchhHhhhhhhhhhhhccccccccCccccccccccccccccCcEEEEEEEeeEEEEEeccc
Confidence 99999998875432110 0 12469999999999999999986
No 13
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=99.92 E-value=3.6e-25 Score=162.07 Aligned_cols=101 Identities=30% Similarity=0.352 Sum_probs=90.3
Q ss_pred CCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHH
Q psy13822 5 PEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMA 84 (123)
Q Consensus 5 ~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~a 84 (123)
.++++++||||+||+|||.+++.++|+++..+||+|+..++.++. |+|+++|++||++|++||.|. .|+++|
T Consensus 210 ~~~~~~vTVlFaDIvgFT~ls~~~~p~evv~lLn~~~~~~~~i~~-~~g~~iKtiGDa~mavfg~p~-------~a~~~A 281 (407)
T 1y10_A 210 LPGARQVTVAFADLVGFTQLGEVVSAEELGHLAGRLAGLARDLTA-PPVWFIKTIGDAVMLVCPDPA-------PLLDTV 281 (407)
T ss_dssp CTTCEEEEEEEEEECSBCTTSCBCCHHHHHHHHHHHHHHHHHHCC-TTCEEEEEETTEEEEEESSHH-------HHHHHH
T ss_pred ccceeeEEEEEEEccCchHHHhhCCHHHHHHHHHHHHHHHHHHHH-cCcEEEEEecceEEEEECCHH-------HHHHHH
Confidence 457899999999999999999999999999999999997777665 899999999999999998763 589999
Q ss_pred HHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEe
Q psy13822 85 LDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKH 119 (123)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~ 119 (123)
++|++.+... +.++++|||||+|+|++|+
T Consensus 282 l~m~~~l~~~------~~~l~iRIGIhtG~Vv~Gv 310 (407)
T 1y10_A 282 LKLVEVVDTD------NNFPRLRAGVASGMAVSRA 310 (407)
T ss_dssp HHHHHHHHTC------TTSCCEEEEEEEEEEEEET
T ss_pred HHHHHHHHHh------CCCceEEEEEEEEEEEEec
Confidence 9999988763 2467999999999999984
No 14
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=97.56 E-value=0.0011 Score=45.95 Aligned_cols=61 Identities=18% Similarity=0.157 Sum_probs=54.9
Q ss_pred ceeeEEEEEeeccChhh-hccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEe
Q psy13822 7 DFREVTIYFSDIVGFTT-ISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG 67 (123)
Q Consensus 7 ~~~~~tvlf~di~~~t~-l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~f 67 (123)
+..+++|..+||.++|. ..+..++.+......++...+.+.+++++|.....-||.++++.
T Consensus 128 ~dsqIaVahiDI~d~t~~~t~~~s~yd~~~~~l~l~~~Ll~y~~~igG~lf~iGgdny~ift 189 (268)
T 2qv6_A 128 VDGYVQIAHIDINNITGTLTDIVSAYDTYLNVNKVKLALMEELLKYNALLFFIGGDNFMAPS 189 (268)
T ss_dssp SSCCEEEEEEEETTHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTTCCCEEEETTEEEEEC
T ss_pred CcCceEEEEEEecCccccccccCChHHHHHHHHHHHHHHHHHHHHhCCEEEEECCCEEEEEe
Confidence 45689999999999998 56667999999999999999999999999999988888998886
No 15
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=97.41 E-value=0.001 Score=43.38 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=66.2
Q ss_pred eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822 8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL 87 (123)
Q Consensus 8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~ 87 (123)
....+++++||.+|..+-+..+.+.--.+|..+...+.+.+...+..+-++.||.|++++.. .+ ...+...+-.+
T Consensus 59 ~~~~~l~~idid~f~~in~~~G~~~gd~~L~~ia~~L~~~~~~~~~~~~R~~~d~F~il~~~--~~---~~~~~~~~~~i 133 (206)
T 3i5c_A 59 QSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPG--TS---PGGARLLAEKV 133 (206)
T ss_dssp TCCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTCCSTTCEEEEEETTEEEEEEET--CC---HHHHHHHHHHH
T ss_pred CCcEEEEEEECcchhHHHhccChhHHHHHHHHHHHHHHHhcCCCCcEEEEecCCeEEEEECC--CC---HHHHHHHHHHH
Confidence 34689999999999999988888888788888877777766556677889999999988732 22 22344444455
Q ss_pred HHHhhhhhhcCCC---CCceeEEEeee
Q psy13822 88 LHHSGRFKIRHLP---YTPLRLRIGLH 111 (123)
Q Consensus 88 ~~~~~~~~~~~~~---~~~l~~rIGi~ 111 (123)
.+.+......... ...+.+.||+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~siGi~ 160 (206)
T 3i5c_A 134 RRTVESLQISHDQPRPGSHLTVSIGVS 160 (206)
T ss_dssp HHHHHHTCCEECSSSTTEECCEEEEEE
T ss_pred HHHHHhcccccCCCCCCceEEEEEEEE
Confidence 5555544322111 12455666654
No 16
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=97.33 E-value=0.0012 Score=41.92 Aligned_cols=99 Identities=12% Similarity=0.079 Sum_probs=68.6
Q ss_pred eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822 8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL 87 (123)
Q Consensus 8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~ 87 (123)
....+++++||.+|..+-+..+.+.--.+|..+-..+.+.+.. +..+-++.||.++++... .....+...+-.+
T Consensus 42 ~~~~~l~~i~id~f~~in~~~G~~~gd~~L~~~a~~L~~~~~~-~~~~~R~~~d~F~ill~~-----~~~~~~~~~~~~i 115 (177)
T 3hva_A 42 RKPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFGE-EADLARFGDSIFAALFKG-----KTPEQAQAALQRL 115 (177)
T ss_dssp CCCEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GCEEEECSSSEEEEEEET-----CCHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCHHHHHHHhCchhHHHHHHHHHHHHHHhCCC-CceEEEecCCeEEEEeCC-----CCHHHHHHHHHHH
Confidence 4568999999999999988888888888888888888888766 567888999999888732 1234455556666
Q ss_pred HHHhhhhhhc-CCCCCceeEEEeeec
Q psy13822 88 LHHSGRFKIR-HLPYTPLRLRIGLHT 112 (123)
Q Consensus 88 ~~~~~~~~~~-~~~~~~l~~rIGi~~ 112 (123)
++.+...... ......+.+.||+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~siGi~~ 141 (177)
T 3hva_A 116 LKKVENHLFELNGRSAQATLSIGVAG 141 (177)
T ss_dssp HHHHHTCCEEETTEEECCCEEEEEEE
T ss_pred HHHHHhCccccCCceeeEEEEEEEEE
Confidence 6666542111 111224666777653
No 17
>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2, protein structure initiative; 2.24A {Caldicellulosiruptor saccharolyticus}
Probab=97.26 E-value=0.002 Score=41.22 Aligned_cols=96 Identities=8% Similarity=0.010 Sum_probs=67.3
Q ss_pred eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822 8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL 87 (123)
Q Consensus 8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~ 87 (123)
....+++++||.+|..+-+..+.+.--.+|..+-..+.+.+.. +..+-++.||.++++... .+ +...+-.+
T Consensus 34 ~~~~~l~~idid~f~~in~~~G~~~gd~lL~~ia~~L~~~~~~-~~~~~R~~~d~F~il~~~----~~----~~~~~~~l 104 (178)
T 3mtk_A 34 CIDTYLIFLEVRDLEKLNVTYGYDLVDELIIHISKRIKDIAGE-GNKAFKIGFDRFAIICKS----EN----ISDFIERM 104 (178)
T ss_dssp CTTEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHHCS-SSEEEEEETTEEEEEEEC----SS----HHHHHHHH
T ss_pred CCceEEEEEEhhHhhHHHHHhChHHHHHHHHHHHHHHHHhcCC-CCEEEEecCCEEEEEecC----cc----HHHHHHHH
Confidence 4568899999999999999889888888888888888887754 567888999999888743 11 44445555
Q ss_pred HHHhhhhhhcCCCCCceeEEEeeec
Q psy13822 88 LHHSGRFKIRHLPYTPLRLRIGLHT 112 (123)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~rIGi~~ 112 (123)
++.+............+.+.||+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~siGi~~ 129 (178)
T 3mtk_A 105 LSQLLLPYNVNGNLIRVNFNIGAAQ 129 (178)
T ss_dssp HHHHTSCEEETTEEECCCEEEEEEE
T ss_pred HHHhcCCEEECCEEEEEEEEEEEEE
Confidence 5555532211111225667777754
No 18
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=97.24 E-value=0.0013 Score=42.91 Aligned_cols=98 Identities=10% Similarity=0.098 Sum_probs=65.2
Q ss_pred eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822 8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL 87 (123)
Q Consensus 8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~ 87 (123)
..+.+++++||.+|..+-+..+...--.+|..+-..+.+.+.. +..+-++-||.|++++.. .....+...+-.+
T Consensus 31 ~~~~~l~~iDiD~FK~INd~~Gh~~GD~vL~~va~~L~~~~~~-~~~v~R~gGDEF~ill~~-----~~~~~~~~~~~~i 104 (179)
T 3tvk_A 31 PLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRD-YETVYRYGGEEFIIIVKA-----ANDEEACRAGVRI 104 (179)
T ss_dssp TSEEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHTSCT-TSCEEECSSSEEEEEEEE-----SSHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCcHHHhccCchhHHHHHHHHHHHhHhcCCc-ccEEEEccCCEEEEEcCC-----CCHHHHHHHHHHH
Confidence 3468999999999999887777666666777777777776644 467888999999988732 1233455566667
Q ss_pred HHHhhhhhhcCCC-CCceeEEEeee
Q psy13822 88 LHHSGRFKIRHLP-YTPLRLRIGLH 111 (123)
Q Consensus 88 ~~~~~~~~~~~~~-~~~l~~rIGi~ 111 (123)
++.+......... ...+.+.||+.
T Consensus 105 ~~~i~~~~~~~~~~~~~vt~SiGia 129 (179)
T 3tvk_A 105 CQLVDNHAITHSEGHINITVTAGVS 129 (179)
T ss_dssp HHHHHHSCEEETTEEECCCEEEEEE
T ss_pred HHHHHcCCcccCCceEEEEEEEEEE
Confidence 6666553222111 12456666665
No 19
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=97.21 E-value=0.00092 Score=42.30 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=50.8
Q ss_pred eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeC
Q psy13822 8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGG 68 (123)
Q Consensus 8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg 68 (123)
....+++++||.+|..+.+..+.+.--.+|..+-..+.+.+.. +..+-++.||.++++..
T Consensus 28 ~~~~~l~~i~id~f~~in~~~G~~~gd~~L~~~a~~L~~~~~~-~~~~~R~~~d~F~ill~ 87 (171)
T 3icl_A 28 GNPVVLLFLDVDNFKSINDSLGHLVGDRLLRATAERIRTAVRD-GDTVARIGGDKFTILLN 87 (171)
T ss_dssp TSCCEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHSCT-TCEEEEETTTEEEEEES
T ss_pred CCcEEEEEEEChHhhHHHHHhChHHHHHHHHHHHHHHHHhcCC-CCEEEEecCCEEEEEec
Confidence 4568999999999999999889888888888888888887754 56788899999988874
No 20
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=97.08 E-value=0.0027 Score=40.39 Aligned_cols=99 Identities=7% Similarity=0.052 Sum_probs=67.0
Q ss_pred eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822 8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL 87 (123)
Q Consensus 8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~ 87 (123)
....+++++||.+|..+.+..+.+..-.+|..+-..+.+.+.. +..+-++.||.|+++... .....+...+-.+
T Consensus 37 ~~~~~l~~i~id~f~~in~~~G~~~gd~~L~~ia~~L~~~~~~-~~~~~R~~~d~F~ill~~-----~~~~~~~~~~~~i 110 (177)
T 3ign_A 37 GQATSLVMFDIDHFKPVNDTYGHLAGDEVIRHTADVTRNNIRQ-SDSAGRYGGEEFGIILPE-----TDAESARVICERI 110 (177)
T ss_dssp CCCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTSCT-TSEEEECSSSEEEEEEET-----CCHHHHHHHHHHH
T ss_pred CCceEEEEEEchhhHHHHHhhChHHHHHHHHHHHHHHHHhCCC-CCEEEEecCCeEEEEeCC-----CCHHHHHHHHHHH
Confidence 3467899999999999998888888878888877777776644 457888999999888732 2233455555666
Q ss_pred HHHhhhhhhcC-CCCCceeEEEeeec
Q psy13822 88 LHHSGRFKIRH-LPYTPLRLRIGLHT 112 (123)
Q Consensus 88 ~~~~~~~~~~~-~~~~~l~~rIGi~~ 112 (123)
++.+....... .....+.+.||+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~siGi~~ 136 (177)
T 3ign_A 111 REAIEKSTVSTSAGDIQYTVSMGIAQ 136 (177)
T ss_dssp HHHHHTCCEECSSCEECCCEEEEEEE
T ss_pred HHHHHhcCcccCCCceeEEEEEEEEe
Confidence 66665432211 11235567777664
No 21
>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain, C-DI-GMP receptor, lyase; 2.00A {Pseudomonas fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A
Probab=97.08 E-value=0.0074 Score=44.04 Aligned_cols=100 Identities=10% Similarity=0.044 Sum_probs=72.3
Q ss_pred eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhc---CeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHH
Q psy13822 8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY---NVYKVETIGDAYMVVGGLPVRIPDHADQIATMA 84 (123)
Q Consensus 8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~---gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~a 84 (123)
....+++++||.+|..+-+..+.+.--.+|..+-..+.+.+..+ +..+-++-||.+.++.... ....+...+
T Consensus 46 ~~~~~l~~idid~fk~iNd~~G~~~gD~lL~~va~~L~~~~~~~~~~~~~v~R~ggdeF~ill~~~-----~~~~~~~~~ 120 (430)
T 3pjx_A 46 ASSGYLLLLRVKDLAGLNQRLGGQRTDELLKAVGEQLSRECAKYPETQNLVTRIRGGEFAVLAPGM-----TREEALQLA 120 (430)
T ss_dssp CSCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTSGGGTTCEEEEETTEEEEEEETC-----CHHHHHHHH
T ss_pred cCceEEEEEEchhhhHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCcCceEEEecCceEEEEeCCC-----CHHHHHHHH
Confidence 45678999999999999998898888889999999999888875 6778899999998887332 223344555
Q ss_pred HHHHHHhhhhhhcCCCCCceeEEEeeec
Q psy13822 85 LDLLHHSGRFKIRHLPYTPLRLRIGLHT 112 (123)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~l~~rIGi~~ 112 (123)
-.+.+.+............+.+.||+..
T Consensus 121 ~~l~~~l~~~~~~~~~~~~~~~siGi~~ 148 (430)
T 3pjx_A 121 QSLDSALSSLYATGATDVAAVASIGLAP 148 (430)
T ss_dssp HHHHHHHHHHHHTTSCSCTTCEEEEEEE
T ss_pred HHHHHHHhhhhhcCCeeeeEEEEEEEEe
Confidence 6666666554332223345667777753
No 22
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=96.97 E-value=0.0019 Score=41.38 Aligned_cols=97 Identities=11% Similarity=0.021 Sum_probs=67.7
Q ss_pred eeEEEEEeec---cChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHH
Q psy13822 9 REVTIYFSDI---VGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMAL 85 (123)
Q Consensus 9 ~~~tvlf~di---~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al 85 (123)
+..+++++|| .+|..+-+..+.+.--.+|..+...+.+.+.. ..+-++.||.++++... .....+...+-
T Consensus 26 ~~~~l~~i~i~~id~f~~in~~~G~~~gD~~L~~ia~~L~~~~~~--~~v~R~~~deF~ill~~-----~~~~~~~~~~~ 98 (176)
T 3hvw_A 26 GALTVIAADLLPLALLNTIIRTLGYPFSNDLMLEARDRIRAELPD--FTLYKISPTRFGLLLPR-----QQQEETESVCL 98 (176)
T ss_dssp SEEEEEEEECSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCTT--SCEEEEETTEEEEEEEG-----GGGGGHHHHHH
T ss_pred CCceEEEEEecCHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHCCC--CeEEEecCCEEEEEeCC-----CCHHHHHHHHH
Confidence 4678889999 88998888889888888999999999988877 78889999999988732 12223445556
Q ss_pred HHHHHhhhhhhcCCCCCceeEEEeeec
Q psy13822 86 DLLHHSGRFKIRHLPYTPLRLRIGLHT 112 (123)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~rIGi~~ 112 (123)
.+++.+............+.+.||+..
T Consensus 99 ~l~~~~~~~~~~~~~~~~~~~siGi~~ 125 (176)
T 3hvw_A 99 RLLRAFESPVVCRGIPIKANVGLGVLP 125 (176)
T ss_dssp HHHHHTTSCEEETTEEECCCCEEEEEE
T ss_pred HHHHHHhCCcccCCEEEEEEEEEEEEe
Confidence 666665542111111224566666653
No 23
>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition, xanthomonas Ca signaling protein-inhibitor complex; HET: C2E; 1.90A {Xanthomonas campestris PV}
Probab=96.85 E-value=0.0086 Score=37.63 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=47.1
Q ss_pred eeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEe
Q psy13822 9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG 67 (123)
Q Consensus 9 ~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~f 67 (123)
...+++++||.+|..+-+..+.+.--.+|..+...+.+.+.. +..+-++.||.|+++.
T Consensus 41 ~~~~l~~idid~f~~in~~~G~~~gd~~L~~ia~~L~~~~~~-~~~~~R~~~deF~il~ 98 (167)
T 3qyy_A 41 WPFVLFVLDMDNLKPINDRFGHLAGDRVLVRLVESAYGWLGA-QDWIGRWGGDEFLIGV 98 (167)
T ss_dssp CCCEEEEEEESSHHHHHHHHCHHHHHHHHHHHHHHHTTTCCT-TCEEEEEETTEEEEEE
T ss_pred CcEEEEEEechhhhHHHhhcCcHHHHHHHHHHHHHHHHhcCC-CCEEEeecCceEEEEc
Confidence 358999999999999998888887777777777776666543 5678889999998887
No 24
>3ezu_A Ggdef domain protein; multidomain protein of unknown function with GG domain, structural genomics, joint center for structural GE JCSG; 1.95A {Geobacter sulfurreducens}
Probab=96.83 E-value=0.0089 Score=42.60 Aligned_cols=98 Identities=15% Similarity=0.089 Sum_probs=65.6
Q ss_pred eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822 8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL 87 (123)
Q Consensus 8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~ 87 (123)
....+++++||.+|..+-+..+.+.--.+|..+-..+.+.+.. +..+-++-||.|.++... .+ ...+...+-.+
T Consensus 211 ~~~~all~idId~fk~INd~~G~~~gD~lL~~va~~L~~~~~~-~d~v~R~ggdeF~ill~~--~~---~~~~~~~~~~l 284 (342)
T 3ezu_A 211 GSNVGIMLIDLDYFKLVGDNYGHQTGDRILQLVAETITSHLRR-SDVVGRYDGDEFVVYLSP--VE---PASLRTVAENL 284 (342)
T ss_dssp TCEEEEEEEEEEECCCCC-----CHHHHHHHHHHHHHHHTCCT-TCEEEECSSSEEEEEESS--CC---HHHHHHHHHHH
T ss_pred CCcEEEEEEECCcHHHHHHhhChHHHHHHHHHHHHHHHHHCCC-CcEEEEEcCCEEEEEECC--CC---HHHHHHHHHHH
Confidence 3568999999999999998888887778888888888776654 567888999999888732 22 23445555566
Q ss_pred HHHhhhhhhcCCCCCceeEEEeeecCc
Q psy13822 88 LHHSGRFKIRHLPYTPLRLRIGLHTGR 114 (123)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~rIGi~~G~ 114 (123)
++.+..... ...++.+.||+..|.
T Consensus 285 ~~~l~~~~~---~~~~~~~siGva~~~ 308 (342)
T 3ezu_A 285 RRSIEEESA---RMVPVTASIGVAQGI 308 (342)
T ss_dssp HHHHHHHTT---TTCCEEEEEEEEEEE
T ss_pred HHHHhcccC---CccceEEEEEEEEEe
Confidence 666554422 234678888888653
No 25
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=96.33 E-value=0.022 Score=40.08 Aligned_cols=60 Identities=8% Similarity=0.062 Sum_probs=44.2
Q ss_pred eeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeC
Q psy13822 9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGG 68 (123)
Q Consensus 9 ~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg 68 (123)
...+++++||.+|..+-+..+...--.++..+...+.+.+...+..+.++.||.|++++.
T Consensus 201 ~~~~l~~idid~fk~ind~~G~~~gD~~L~~va~~l~~~~~~~~~~~~R~ggdeF~ill~ 260 (358)
T 3bre_A 201 SQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLP 260 (358)
T ss_dssp CCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTCCSTTCEEEEEETTEEEEEEE
T ss_pred CcEEEEEEEchhhhHHHHhcChHHHHHHHHHHHHHHHHhcCCcCcEEEEecCCeEEEEeC
Confidence 357899999999988877667666656666666666554444456788899999988874
No 26
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=95.89 E-value=0.047 Score=39.89 Aligned_cols=98 Identities=13% Similarity=0.082 Sum_probs=67.8
Q ss_pred eeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy13822 9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL 88 (123)
Q Consensus 9 ~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~~ 88 (123)
...+++++||.+|..+-+..+...--.+|..+-..+.+.+.. ...+-++-||.|.++... . ....+...+-.++
T Consensus 318 ~~~~l~~idid~fk~iNd~~Gh~~gD~~L~~~a~~l~~~~~~-~d~~~R~ggdeF~il~~~--~---~~~~~~~~~~~i~ 391 (459)
T 1w25_A 318 DPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRA-IDLPCRYGGEEFVVIMPD--T---ALADALRIAERIR 391 (459)
T ss_dssp CCCEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHTSCT-TSEEEECSSSEEEEEETT--C---CHHHHHHHHHHHH
T ss_pred CcEEEEEEEchhhchhhhccChhhHHHHHHHHHHHHHHhCCC-cCEEEEEcCceEEEEeCC--C---CHHHHHHHHHHHH
Confidence 468999999999999999999888888888888888877654 457888999999998732 1 2334555666666
Q ss_pred HHhhhhhhcCC---CCCceeEEEeeec
Q psy13822 89 HHSGRFKIRHL---PYTPLRLRIGLHT 112 (123)
Q Consensus 89 ~~~~~~~~~~~---~~~~l~~rIGi~~ 112 (123)
+.+........ ....+.+.||+..
T Consensus 392 ~~~~~~~~~~~~~~~~~~~t~siG~~~ 418 (459)
T 1w25_A 392 MHVSGSPFTVAHGREMLNVTISIGVSA 418 (459)
T ss_dssp HHHHTSCEECGGGSCEECCCEEEEEEE
T ss_pred HHHHhCCccccCCCceeEEEEEEEEEe
Confidence 66553221110 1124667777654
No 27
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=92.47 E-value=0.023 Score=41.50 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=0.0
Q ss_pred eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeC
Q psy13822 8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGG 68 (123)
Q Consensus 8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg 68 (123)
....+++++||.+|..+-+..+.+.--.+|..+-..+.+.+.. +..+-++-||.+.+++.
T Consensus 42 ~~~~~l~~idid~fk~iNd~~G~~~gD~lL~~va~~L~~~~~~-~~~v~R~ggdeF~ill~ 101 (437)
T 3hvb_A 42 RKPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFGE-EADLARFGDSIFAALFK 101 (437)
T ss_dssp -------------------------------------------------------------
T ss_pred CCceEEEEEEcCcHHHHHHhhCchhHHHHHHHHHHHHHHhCCC-CceEEEecCCEEEEEeC
Confidence 4567899999999999998888877777888877777777654 45677888999988873
No 28
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR complex function; HET: ADP; 2.31A {Pyrococcus furiosus} PDB: 3ur3_C 4doz_A
Probab=91.56 E-value=2.7 Score=32.82 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHH-HHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhh
Q psy13822 31 FEVVDLLNDLYT-CFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRF 94 (123)
Q Consensus 31 ~~~~~~l~~~~~-~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~~~~~~~~ 94 (123)
..+-+.|+.|+. .+..++ +++|.++..-||-++++.. ...|+.+|..+++.+...
T Consensus 465 aaLSRaL~~Ff~~~V~~Iv-k~~G~vIYaGGDDfL~llP--------~d~AlelAe~LRe~F~~~ 520 (693)
T 3ung_C 465 VAISQALANFSIREVRSVV-KDEGLLIYAGGDDVLAILP--------VDKALEVAYKIRKEFGKS 520 (693)
T ss_dssp HHHHHHHHHHHHTHHHHHH-TTSSEEEEECSSEEEEEEE--------HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHH-hhCcEEEEEcCceEEEEee--------HHHHHHHHHHHHHHHHHH
Confidence 345567888885 577777 5899999999999999973 367889999998888763
No 29
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=89.75 E-value=3.7 Score=28.38 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=48.1
Q ss_pred EEEeeccChhhhccCCCH---HHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCC
Q psy13822 13 IYFSDIVGFTTISAYSTP---FEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGL 69 (123)
Q Consensus 13 vlf~di~~~t~l~~~~~~---~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~ 69 (123)
+..+.|.||-++++.+.| .++..+-.+++..+.+.+..+||.+..+.=|.++++-+.
T Consensus 4 it~i~i~~Y~~WT~t~g~~RE~~lQ~lQs~l~~~l~~~~~~~~g~~f~~R~D~~ia~tng 63 (268)
T 2qv6_A 4 ITVIQIDNYGPWTVTPNPRRESDLQALQSRLYADLNLMFGAHKGLVFYTRFDNLIAITNG 63 (268)
T ss_dssp EEEEEETTHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHTTTCEEECTTSSEEEEECTT
T ss_pred EEEEEEcCcccccCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCEEeecccceEEEEeCC
Confidence 345778899999998866 556777788999999999999999999999999999843
No 30
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.98 E-value=4.9 Score=23.31 Aligned_cols=36 Identities=8% Similarity=-0.086 Sum_probs=24.0
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEe
Q psy13822 25 SAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG 67 (123)
Q Consensus 25 ~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~f 67 (123)
....+++++- ..+.++...|||.++...|---++.|
T Consensus 18 ~~~~~~~~lk-------~~L~~lF~~yGG~Vl~VtgG~AfV~F 53 (96)
T 2diu_A 18 PANKDGKSVS-------NRLRRLSDNCGGKVLSITGCSAILRF 53 (96)
T ss_dssp CTTSCHHHHH-------HHHHHHHHTTTCCEEECCTTCEEEEE
T ss_pred CCcCCHHHHH-------HHHHHHHHHcCCeeEEEecCEEEEEE
Confidence 4455665543 44556667888888888886556777
No 31
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.65 E-value=14 Score=21.25 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhcC-eEEEeeeCcEEEEEe
Q psy13822 40 LYTCFDATINAYN-VYKVETIGDAYMVVG 67 (123)
Q Consensus 40 ~~~~~~~~v~~~g-g~~~~~~Gd~~~~~f 67 (123)
++..+.+.+..|| -..+++..|..++.|
T Consensus 37 l~~~L~~~F~~~G~Vilvr~v~d~~fVtF 65 (95)
T 1ufw_A 37 LRTELMQTLGSYGTIVLVRINQGQMLVTF 65 (95)
T ss_dssp HHHHHHHHHHHHSCCSEEEEETTEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEEecCcEEEEE
Confidence 3445556666677 778899999998988
No 32
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=65.92 E-value=7.6 Score=22.67 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=20.1
Q ss_pred HHHHHHHhhcCeEEEeeeCc-EEEEEe
Q psy13822 42 TCFDATINAYNVYKVETIGD-AYMVVG 67 (123)
Q Consensus 42 ~~~~~~v~~~gg~~~~~~Gd-~~~~~f 67 (123)
..+.++.+.+||..++++.| ..+++|
T Consensus 30 ~DI~~lFs~fggv~I~WidDTsAlvvf 56 (100)
T 1whv_A 30 SDLYQLFSAFGNIQISWIDDTSAFVSL 56 (100)
T ss_dssp HHHHHHHTTTCSCCCEEEETTEEEEEC
T ss_pred HHHHHHhhccCCEEEEEEcCCeEEEEe
Confidence 34556677789999999988 667887
No 33
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=64.83 E-value=8.8 Score=22.45 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=21.2
Q ss_pred HHHHHHHhhcCeEEEeeeCc-EEEEEeCC
Q psy13822 42 TCFDATINAYNVYKVETIGD-AYMVVGGL 69 (123)
Q Consensus 42 ~~~~~~v~~~gg~~~~~~Gd-~~~~~fg~ 69 (123)
..+.++.+.+||..++++.| ..+++|.-
T Consensus 20 ~Di~~lFs~fggv~I~WidDTsAlvvf~~ 48 (101)
T 3ctr_A 20 SDLYQLFSAFGNIQISWIDDTSAFVSLSQ 48 (101)
T ss_dssp HHHHHHTTTSEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHhccCCEEEEEEcCCeEEEEecC
Confidence 34566777889999999988 66788733
No 34
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=58.22 E-value=15 Score=25.08 Aligned_cols=49 Identities=16% Similarity=0.083 Sum_probs=43.1
Q ss_pred EeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEE
Q psy13822 15 FSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAY 63 (123)
Q Consensus 15 f~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~ 63 (123)
|=|+.||-+-.-.++|+|+...+-.-...+....+.+|+.+......|.
T Consensus 65 ypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~~G~~l~hVKPHGA 113 (255)
T 1v6t_A 65 YPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKAEGLELQHVKPHGA 113 (255)
T ss_dssp CSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCCHH
T ss_pred CCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEeEEeccCHH
Confidence 6799999999999999999999999999999999999988876665554
No 35
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=56.57 E-value=17 Score=24.89 Aligned_cols=50 Identities=12% Similarity=-0.014 Sum_probs=37.0
Q ss_pred EeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEE
Q psy13822 15 FSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYM 64 (123)
Q Consensus 15 f~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~ 64 (123)
|=|+.||-+-.-.++|+++...+-.-...+....+.+|+.+......|.+
T Consensus 60 ypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~~G~~l~hVKPHGAL 109 (252)
T 1xw8_A 60 FPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQGGVMRHVKPHGML 109 (252)
T ss_dssp CC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCCHHH
T ss_pred CCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEeEEeCcCHHH
Confidence 67999999999999999999999999999999999999888766665543
No 36
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.37 E-value=27 Score=19.90 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=20.8
Q ss_pred HHHHHHHHhhcC-eEEEeeeCcEEEEEe
Q psy13822 41 YTCFDATINAYN-VYKVETIGDAYMVVG 67 (123)
Q Consensus 41 ~~~~~~~v~~~g-g~~~~~~Gd~~~~~f 67 (123)
...+.+.+..|| -..+++..|...+.|
T Consensus 29 ~~~L~~~F~~~G~Vi~vr~~~d~~fVtF 56 (91)
T 2dnr_A 29 IDELLQQFASFGEVILIRFVEDKMWVTF 56 (91)
T ss_dssp HHHHHHHHHTTCCEEEEEECSSSEEEEE
T ss_pred HHHHHHHHHhCCCeEEEEEecCCEEEEE
Confidence 345556667788 788889999988888
No 37
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=51.01 E-value=15 Score=25.10 Aligned_cols=49 Identities=16% Similarity=0.110 Sum_probs=42.8
Q ss_pred EeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEE
Q psy13822 15 FSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAY 63 (123)
Q Consensus 15 f~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~ 63 (123)
|=|+.||-+-.-.++|+++...+-.-...+....+.+|+.+......|.
T Consensus 71 ypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~~G~~l~hVKPHGA 119 (252)
T 2x5e_A 71 YPDLSGFGRRSLACSAEEVHAMVLYQIGALDAFCRSLGTQVAYVKPHGA 119 (252)
T ss_dssp CSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHHTTCCCCEECCCHH
T ss_pred CCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEeEEeccCHH
Confidence 6799999999999999999999999999999999999987766655554
No 38
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=49.48 E-value=15 Score=25.11 Aligned_cols=49 Identities=20% Similarity=0.136 Sum_probs=42.8
Q ss_pred EeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEE
Q psy13822 15 FSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAY 63 (123)
Q Consensus 15 f~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~ 63 (123)
|=|+.||-+-.-.++|+|+...+-.-...+....+.+|+.+......|.
T Consensus 65 ypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~~G~~l~hVKPHGA 113 (250)
T 2dfa_A 65 FPDLVGFGRREMALSPEEVYADVLYQIGALSAFLKAEGLPLHHVKPHGA 113 (250)
T ss_dssp CSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHHTTCCCCCBCCCHH
T ss_pred CCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEeEEeccCHH
Confidence 6799999999999999999999999999999999999988776655554
No 39
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=41.21 E-value=49 Score=18.80 Aligned_cols=29 Identities=21% Similarity=0.118 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCeEE
Q psy13822 27 YSTPFEVVDLLNDLYTCFDATINAYNVYK 55 (123)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~~v~~~gg~~ 55 (123)
..+.+.....|++....+.+.++++||..
T Consensus 60 ~~D~k~ge~~L~~ai~~i~~~i~~~gG~~ 88 (93)
T 2qn6_B 60 GTNPKEASEALNQIISNLIKIGKEENVDI 88 (93)
T ss_dssp ESCHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 46889999999999999999999999865
No 40
>3lmb_A Uncharacterized protein; protein OLEI01261, unknown function, chlorobaculum tepidum T structural genomics, PSI2, MCSG; HET: MSE; 2.10A {Oleispira antarctica rb-8} SCOP: d.38.1.0
Probab=35.92 E-value=80 Score=19.76 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=36.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCC
Q psy13822 26 AYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGL 69 (123)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~ 69 (123)
..++|++....+++++..-....+..|..+..+.++.+-+.-..
T Consensus 3 ~~~~p~~~~~~l~~~l~~~iP~~~~~Gi~i~~~~~~~~~~~~pl 46 (165)
T 3lmb_A 3 ASLTPDQVSKKLKQFFSDHLPISQFMGLEIESYDGDTLILTAPL 46 (165)
T ss_dssp CCCCHHHHHHHHHHHHHHHCHHHHHHTCEEEEECSSEEEEEECS
T ss_pred CCCCHHHHHHHHHHHHHhcCchHHhCCcEEEEEcCCEEEEEEEc
Confidence 35789999999999999999999999999999988776665433
No 41
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=35.65 E-value=60 Score=18.24 Aligned_cols=39 Identities=5% Similarity=-0.116 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCeEE--EeeeCcEEEEEeCCC
Q psy13822 32 EVVDLLNDLYTCFDATINAYNVYK--VETIGDAYMVVGGLP 70 (123)
Q Consensus 32 ~~~~~l~~~~~~~~~~v~~~gg~~--~~~~Gd~~~~~fg~~ 70 (123)
++...+++++..++..+..+||.+ ..+.+.-+.+-+...
T Consensus 7 ~~~~~I~~~L~~IRP~L~~dGGdvelv~v~~g~V~V~L~Ga 47 (88)
T 1xhj_A 7 TMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGA 47 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCEEEEEECCSSEEEEEEESS
T ss_pred HHHHHHHHHHHHhcHHHHhcCCeEEEEEEECCEEEEEEeec
Confidence 445677777778999999999854 445455566666433
No 42
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=34.29 E-value=45 Score=18.86 Aligned_cols=65 Identities=9% Similarity=0.035 Sum_probs=41.3
Q ss_pred ccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcE----EEEEeCCCCCCchHHHHHHHHHHHHHHH
Q psy13822 18 IVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDA----YMVVGGLPVRIPDHADQIATMALDLLHH 90 (123)
Q Consensus 18 i~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~----~~~~fg~~~~~~~~~~~a~~~al~~~~~ 90 (123)
+.++....-..+|+..-.++..=-..+.++.+.+||..+.+.-|+ -.-++|.+ . +++.|.+++..
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~----~----~v~~A~~~I~~ 81 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPS----S----DVEKAKKQLLH 81 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCH----H----HHHHHHHHHHH
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCH----H----HHHHHHHHHHH
Confidence 344444444568887777777767788889899966666776666 66666431 1 55555555443
No 43
>2xgv_A PSIV capsid N-terminal domain; retroviral capsid, viral protein; 2.00A {Microcebus murinus}
Probab=33.79 E-value=30 Score=21.42 Aligned_cols=21 Identities=29% Similarity=0.151 Sum_probs=18.4
Q ss_pred cChhhhccCCCHHHHHHHHHH
Q psy13822 19 VGFTTISAYSTPFEVVDLLND 39 (123)
Q Consensus 19 ~~~t~l~~~~~~~~~~~~l~~ 39 (123)
..|+.|++.+.|.++..+||.
T Consensus 38 pmF~AlSeg~Tp~Dln~mLn~ 58 (142)
T 2xgv_A 38 TYWGLISQDLSSREQVQLLEV 58 (142)
T ss_dssp HHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHh
Confidence 468999999999999988875
No 44
>2xde_A GAG polyprotein, HIV-1 capsid; AIDS, viral protein; HET: 1B0; 1.40A {Human immunodeficiency virus 1} PDB: 1m9y_C 2x2d_D* 1m9x_C 1m9e_C 1m9f_C 1afv_A 1gwp_A 2pxr_C 2gol_B 1m9c_C 2x83_A 4e91_A* 4e92_A* 2pwo_A 2pwm_A 2gon_A 1ak4_C 2jpr_A* 1m9d_C 4dga_C ...
Probab=33.12 E-value=32 Score=21.42 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=17.9
Q ss_pred cChhhhccCCCHHHHHHHHHH
Q psy13822 19 VGFTTISAYSTPFEVVDLLND 39 (123)
Q Consensus 19 ~~~t~l~~~~~~~~~~~~l~~ 39 (123)
..|+.|++.+.|.++..+||.
T Consensus 39 pmFsALSeg~TP~Dln~mLn~ 59 (145)
T 2xde_A 39 PMFSALSEGATPQDLNTMLNT 59 (145)
T ss_dssp HHHHHHTTTCCHHHHHHHHHT
T ss_pred HHHHHHHcccCcHHHHHHHHh
Confidence 458999999999999888864
No 45
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=32.59 E-value=1.1e+02 Score=20.40 Aligned_cols=82 Identities=16% Similarity=0.317 Sum_probs=50.7
Q ss_pred eeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHH
Q psy13822 9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY--NVYKVETIGDAYMVVGGLPVRIPDHADQIATMALD 86 (123)
Q Consensus 9 ~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~--gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~ 86 (123)
+.+|+......|+. -+++|+-.+|+-+...+.+.+... .+..++++||-= .-++..+++++-+.+
T Consensus 52 ~~lTlYaFStENw~-----Rp~~EV~~Lm~L~~~~l~~~~~~l~~~~vrvr~iGd~~--------~Lp~~~~~~i~~ae~ 118 (225)
T 3ugs_B 52 SNLSLFAFSTENWK-----RPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLS--------RLEDKVREKITLVEE 118 (225)
T ss_dssp CEEEEEEEESGGGG-----SCHHHHHHHHHHHHHHHHHHHHHSTTTTEEEEEESCGG--------GSCHHHHHHHHHHHH
T ss_pred CEEEEEEEcccccC-----CCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeChH--------hCCHHHHHHHHHHHH
Confidence 34666665566653 377888777777777776665443 577888888842 124555555554443
Q ss_pred HHHHhhhhhhcCCCCCceeEEEeeecC
Q psy13822 87 LLHHSGRFKIRHLPYTPLRLRIGLHTG 113 (123)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~rIGi~~G 113 (123)
.-. .+..+.+.|.+++|
T Consensus 119 ~T~----------~n~~~~lnia~~Yg 135 (225)
T 3ugs_B 119 KTK----------HCDALCVNLAISYG 135 (225)
T ss_dssp HHT----------TCCSEEEEEEEEEC
T ss_pred Hhc----------CCCCcEEEEeeCCC
Confidence 321 24567888888886
No 46
>2wlv_A GAG polyprotein, HIV-2 capsid,; virus protein, RNA-binding, capsid protein, viral nucleoprotein, AIDS; 1.25A {Human immunodeficiency virus type 2} PDB: 2x82_A
Probab=30.29 E-value=38 Score=21.05 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=18.1
Q ss_pred cChhhhccCCCHHHHHHHHHH
Q psy13822 19 VGFTTISAYSTPFEVVDLLND 39 (123)
Q Consensus 19 ~~~t~l~~~~~~~~~~~~l~~ 39 (123)
..|+.|++.+.|.++..+||.
T Consensus 37 pmFsALSegaTP~Dln~mLn~ 57 (144)
T 2wlv_A 37 PGFQALSEGCTPYDINQMLNC 57 (144)
T ss_dssp HHHHHHTTTCCHHHHHHHHHT
T ss_pred HHHHHHhcccCcHHHHHHHHh
Confidence 468999999999999988864
No 47
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=29.37 E-value=59 Score=16.89 Aligned_cols=26 Identities=38% Similarity=0.484 Sum_probs=19.2
Q ss_pred EeeccChhhhccCCCHHHHHHHHHHHH
Q psy13822 15 FSDIVGFTTISAYSTPFEVVDLLNDLY 41 (123)
Q Consensus 15 f~di~~~t~l~~~~~~~~~~~~l~~~~ 41 (123)
+.||..|++-.. .+++++...|+++-
T Consensus 25 ildI~~~a~kyg-V~kdeV~~~LrrLe 50 (59)
T 2xvc_A 25 FLDIEHFSKVYG-VEKQEVVKLLEALK 50 (59)
T ss_dssp EEEHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred EEeHHHHHHHhC-CCHHHHHHHHHHHH
Confidence 578888877654 58888888887754
No 48
>2xgu_A Relik capsid N-terminal domain; viral protein, retroviral capsid; 1.50A {Oryctolagus cuniculus} PDB: 2xgy_A
Probab=28.80 E-value=41 Score=21.02 Aligned_cols=21 Identities=33% Similarity=0.249 Sum_probs=18.0
Q ss_pred cChhhhccCCCHHHHHHHHHH
Q psy13822 19 VGFTTISAYSTPFEVVDLLND 39 (123)
Q Consensus 19 ~~~t~l~~~~~~~~~~~~l~~ 39 (123)
..|+.+++.+.|.++..+||.
T Consensus 38 pmFsAlSeg~TP~Din~mLn~ 58 (149)
T 2xgu_A 38 TYFGVISINFTSVDINMLLNV 58 (149)
T ss_dssp HHHHHHTTTCCHHHHHHHHHT
T ss_pred HHHHHHhCCCChHHHHHHHHh
Confidence 458999999999999988865
No 49
>3nrl_A Uncharacterized protein rumgna_01417; beta protein, structural genomics, PSI-2, protein structure initiative; 1.90A {Ruminococcus gnavus}
Probab=27.62 E-value=25 Score=19.58 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=12.5
Q ss_pred EEeeecCceeEEeecC
Q psy13822 107 RIGLHTGRPVSKHLRK 122 (123)
Q Consensus 107 rIGi~~G~v~~g~iG~ 122 (123)
--|+|+|+++--.+|.
T Consensus 28 ygGlHCGE~feV~v~~ 43 (81)
T 3nrl_A 28 YGGLHCGECFDVKVKD 43 (81)
T ss_dssp CCCCCTTCEEEEEETT
T ss_pred cCCcccccEEEEEECC
Confidence 3499999998877765
No 50
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=27.54 E-value=1.5e+02 Score=20.23 Aligned_cols=82 Identities=21% Similarity=0.213 Sum_probs=47.6
Q ss_pred eeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhh--cCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHH
Q psy13822 9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINA--YNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALD 86 (123)
Q Consensus 9 ~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~--~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~ 86 (123)
+.+|+......|+. -+++|+-.+|+-+...+.+.+.. ..+..++++||-= .-++....++..+.+
T Consensus 70 ~~lTlYaFStENwk-----Rp~~EV~~Lm~L~~~~l~~~~~~l~~~~vrvr~iGd~~--------~Lp~~~~~~i~~ae~ 136 (256)
T 4h8e_A 70 KYLTLYAFSTENWS-----RPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTD--------KLPKSTIEAINNAKE 136 (256)
T ss_dssp SEEEEEEEETTGGG-----SCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEESCGG--------GSCHHHHHHHHHHHH
T ss_pred CEEEEEEEchhhhC-----CCHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEecCcc--------cCCHHHHHHHHHHHH
Confidence 34666665566653 46777777766666666555432 2457777888732 124555555554444
Q ss_pred HHHHhhhhhhcCCCCCceeEEEeeecC
Q psy13822 87 LLHHSGRFKIRHLPYTPLRLRIGLHTG 113 (123)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~rIGi~~G 113 (123)
.- ..+..+.+.|.+++|
T Consensus 137 ~T----------~~n~~~~lnia~~Yg 153 (256)
T 4h8e_A 137 KT----------ANNTGLKLIFAINYG 153 (256)
T ss_dssp HT----------TTCCSCEEEEEEEEC
T ss_pred Hh----------cCCCCeEEEEEeCCC
Confidence 31 124467788888876
No 51
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=24.02 E-value=1e+02 Score=17.18 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhhcCeEEEe
Q psy13822 36 LLNDLYTCFDATINAYNVYKVE 57 (123)
Q Consensus 36 ~l~~~~~~~~~~v~~~gg~~~~ 57 (123)
.+.+|......++++|||.++-
T Consensus 18 ~y~~Y~~~~~~~l~~~GG~~l~ 39 (94)
T 3lo3_A 18 KLQQYGARVASTLAKYSGEVLV 39 (94)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEE
Confidence 3578888999999999998774
No 52
>1vqs_A Hypothetical protein AGR_L_1239; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: MSE SO4; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.4.13 PDB: 2ap6_A
Probab=23.46 E-value=46 Score=19.43 Aligned_cols=43 Identities=9% Similarity=-0.133 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCeEEEe----eeCc--EEEEEeCCCC
Q psy13822 29 TPFEVVDLLNDLYTCFDATINAYNVYKVE----TIGD--AYMVVGGLPV 71 (123)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~v~~~gg~~~~----~~Gd--~~~~~fg~~~ 71 (123)
.|..+..+++.+-..-..+..++|+..+. -.|+ .++..|..+.
T Consensus 23 ~Pg~~~~~~~~~~~~~i~~~~~~g~~~vG~~~~~~G~ln~v~~Lw~y~s 71 (116)
T 1vqs_A 23 KNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSS 71 (116)
T ss_dssp STTCHHHHHHHHHHTHHHHHHHHHCCEEEEEEEEESSSSEEEEEEEESC
T ss_pred cCCCHHHHHHHHHHhhhHHHHHhCCceEEEEEcccCCCcEEEEEEecCC
Confidence 44444455555544233455566544443 3455 8999997763
No 53
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=21.62 E-value=1.1e+02 Score=16.74 Aligned_cols=40 Identities=13% Similarity=0.088 Sum_probs=29.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEe
Q psy13822 26 AYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG 67 (123)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~f 67 (123)
..++..++...++.++..+.+.+..- ..+++.|=|.+-+-
T Consensus 14 ~~ls~~~~~~~l~~~~~~i~~~L~~g--~~V~l~gfG~F~v~ 53 (90)
T 1mul_A 14 AELSKTQAKAALESTLAAITESLKEG--DAVQLVGFGTFKVN 53 (90)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHTT--CCEEETTTEEEEEE
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhCC--CeEEEcCCeEEEEE
Confidence 35688999999999999999998664 34556665655444
No 54
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=21.33 E-value=1.1e+02 Score=16.74 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEe
Q psy13822 27 YSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG 67 (123)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~f 67 (123)
.++..++...++.++..+.+.+..- ..+++.|=|.+-+-
T Consensus 15 ~ls~~~~~~~l~~~~~~i~~~L~~g--~~V~l~gfG~F~v~ 53 (90)
T 2o97_B 15 DISKAAAGRALDAIIASVTESLKEG--DDVALVGFGTFAVK 53 (90)
T ss_dssp C-CHHHHHHHHHHHHHHHHHHHHTT--CCEEETTTEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCC--CeEEECCCEEEEEE
Confidence 4688999999999999999998654 34556676666554
No 55
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=20.68 E-value=12 Score=17.61 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=13.5
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy13822 27 YSTPFEVVDLLNDLYTCFDA 46 (123)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~ 46 (123)
...|+++..+..+||..+.+
T Consensus 20 ~~qP~di~~f~a~yF~~l~~ 39 (41)
T 2izx_A 20 RQQPPDLVEFAVEYFTRLRE 39 (41)
T ss_dssp HHCCSCHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHhh
Confidence 34667777777777776653
Done!