RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13822
(123 letters)
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 196 bits (501), Expect = 2e-65
Identities = 55/115 (47%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Query: 2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
V + F VT+ FSDIVGFT I + +P +V+ +LN LYT FD +VYKVETIGD
Sbjct: 6 VVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGD 65
Query: 62 AYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPV 116
AY V GGL HA QIA MAL ++ S H P+++RIGLH+G V
Sbjct: 66 AYCVAGGLHKESDTHAVQIALMALKMMELSDEVMSPHGE--PIKMRIGLHSG-SV 117
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 189 bits (483), Expect = 6e-63
Identities = 42/115 (36%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Query: 2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
+ + + E ++ F+DIVGFT ++ + P ++V L+ LY+ FD ++ + + K+E GD
Sbjct: 2 NIIADKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGD 61
Query: 62 AYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPV 116
+YMVV G+P PDH +A ALD+ + + + K P+ LR+GL TG PV
Sbjct: 62 SYMVVSGVPRPRPDHTQALADFALDMTNVAAQLKDPR--GNPVPLRVGLATG-PV 113
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 179 bits (457), Expect = 3e-59
Identities = 52/115 (45%), Positives = 72/115 (62%), Gaps = 4/115 (3%)
Query: 3 VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY-NVYKVETIGD 61
++ E T+ FSDIVGFT I++ S+P EV LL++LY FDA I Y +YKVETIGD
Sbjct: 2 APAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGD 61
Query: 62 AYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPV 116
AYMVV + V DHAD + AL + + ++ P+R+R+G+H+G PV
Sbjct: 62 AYMVVCNVTVPCDDHADVLLEFALRMHEEA--SRVASSLGEPVRIRVGMHSG-PV 113
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 179 bits (457), Expect = 6e-59
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 11/122 (9%)
Query: 2 PVDPEDFREVTIYFSDIVGFTTISAYSTP----FEVVDLLNDLYTCFDATINAYN---VY 54
PV + + VTI FS IVGF + ++V+LLNDLYT FD ++ VY
Sbjct: 4 PVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVY 63
Query: 55 KVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGR 114
KVET+GD YM V GLP HA I +ALD++ +G+ ++ +++ IG+HTG
Sbjct: 64 KVETVGDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVDG---ESVQITIGIHTG- 119
Query: 115 PV 116
V
Sbjct: 120 EV 121
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 177 bits (451), Expect = 7e-58
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
+ + V+I F+DI GFT++++ T E+V LN+L+ FD + +++ +GD
Sbjct: 26 KIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGD 85
Query: 62 AYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGR 114
Y V GLP DHA M +D++ R + + +R+G+H+GR
Sbjct: 86 CYYCVSGLPEARADHAHCCVEMGMDMIEAISLV--REMTGVNVNMRVGIHSGR 136
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 159 bits (405), Expect = 5e-51
Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 21/134 (15%)
Query: 1 MPVDPEDFREVTIYFSDIVGFTTISA----YSTPFEVVDLLNDLYTCFDATI---NAYNV 53
+ + + V + F+ I F E + LLN++ FD + V
Sbjct: 5 EELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGV 64
Query: 54 YKVETIGDAYMVVGGLPVR-----------IPDHADQIATMALDLLHHSGRFKIRHLPYT 102
K++TIG YM GL H + A L+ I +
Sbjct: 65 EKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKL--DAINKHSFN 122
Query: 103 PLRLRIGLHTGRPV 116
+LR+G++ G PV
Sbjct: 123 DFKLRVGINHG-PV 135
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 125 bits (315), Expect = 3e-37
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 28/141 (19%)
Query: 3 VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDA 62
E VT+ F+DI T + A + P + D + + + I Y Y+V+T+GD+
Sbjct: 5 APKEPTDPVTLIFTDIESSTALWA-AHPDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDS 63
Query: 63 YMVVGGLPVRIPDHADQIATMALD-------LLHHSGRFKIRHLP--------------- 100
+M+ P A ++ L L F+ +
Sbjct: 64 FMIASKSPFAAVQLAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTPPTAHMDPE 123
Query: 101 -----YTPLRLRIGLHTGRPV 116
+ LR+R+G+HTG
Sbjct: 124 VYSRLWNGLRVRVGIHTGLCD 144
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 120 bits (301), Expect = 9e-34
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 14/116 (12%)
Query: 2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
R+VT+ F+D+VGFT + + E+ L L + A V+ ++TIGD
Sbjct: 207 GKPLPGARQVTVAFADLVGFTQLGEVVSAEELGHLAGRLAGLARD-LTAPPVWFIKTIGD 265
Query: 62 AYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVS 117
A M+V P + D L L+ RLR G+ +G VS
Sbjct: 266 AVMLVCPDPAPLLDT-------VLKLVEVVDTDN------NFPRLRAGVASGMAVS 308
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 89.9 bits (224), Expect = 7e-24
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTC-------FDATINAYNVYKVETIGD 61
R +TI SD+ GFT+ S P EVV +LN + TI+ + +GD
Sbjct: 13 RPITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEF-------MGD 65
Query: 62 AYMVVGGLPVRIPDHADQIATMALDLLHHSGRF--KIRHLPYTPLRLRIGLHTG 113
+V+ G P D A + +++ ++ L PL + IG++TG
Sbjct: 66 GILVLFGAPTSQQDDALRAVACGVEMQLALREVNQQVTGLGLQPLEMGIGINTG 119
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 83.0 bits (206), Expect = 3e-21
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 21/118 (17%)
Query: 9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTC-------FDATINAYNVYKVETIGD 61
+++T++FSDI GFT +S + DLLN+ + TI+ + +GD
Sbjct: 8 KKLTVFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKF-------VGD 60
Query: 62 AYMVVGGLPV--RIPDHADQIATMALD----LLHHSGRFKIRHLPYTPLRLRIGLHTG 113
MV G P A +M + + +++ + + PL +R+G++TG
Sbjct: 61 CVMVFFGDPSTQGAKKDAVAAVSMGIAMRKHMKVLRQQWRAQGIT-KPLEIRMGINTG 117
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 82.2 bits (204), Expect = 8e-21
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 24/122 (19%)
Query: 9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTC-------FDATINAYNVYKVETIGD 61
R +TI FSDIVGFT +S V +LLN+ T++ + +GD
Sbjct: 26 RLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKF-------VGD 78
Query: 62 AYMVVGGLPVRI--PDHADQIATMALDLL--------HHSGRFKIRHLPYTPLRLRIGLH 111
A M + G P + + + A +L R + P+R R G+H
Sbjct: 79 AIMALYGAPEEMSPSEQVRRAIATARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIH 138
Query: 112 TG 113
G
Sbjct: 139 QG 140
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis}
PDB: 1ybu_A*
Length = 184
Score = 71.9 bits (177), Expect = 4e-17
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGG 68
TI F+DIVG T +A DLL++ T I + +V T GD ++
Sbjct: 16 MLATIMFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFT 75
Query: 69 LPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
P A A D++ + +RIG+H G
Sbjct: 76 SPSA----A---IACADDIVDAVAAL--------GIEVRIGIHAG 105
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family;
alpha-beta fold, structural genomics, PSI-2, protein
structu initiative; 2.60A {Ruegeria pomeroyi}
Length = 189
Score = 69.2 bits (170), Expect = 5e-16
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 7/108 (6%)
Query: 9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGG 68
R I +D+ G++ + + + D I V+T GD +
Sbjct: 6 RLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFD 65
Query: 69 LPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPV 116
A AL++ + + ++ RIG++ G V
Sbjct: 66 TAQA----A---LRCALEIQQAMQQREEDTPRKERIQYRIGINIGDIV 106
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 5e-04
Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 25/121 (20%)
Query: 8 FREVTIYFSDIVGFTTISAYSTPF------EVVDLLNDLYTCFDATINAYN----VYKVE 57
F E + FS F +++ PF DL+N + + NA + VY
Sbjct: 409 FSERKLKFS--NRFLPVAS---PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 58 TIGDAYMVVGGLPVRIPDHADQIATMALD--LLHHSGRFKIRH-LPYTPLRL-RIGLHTG 113
D ++ G + D I + + FK H L + P +G+ T
Sbjct: 464 DGSDLRVLSGSI---SERIVDCIIRLPVKWETTTQ---FKATHILDFGPGGASGLGVLTH 517
Query: 114 R 114
R
Sbjct: 518 R 518
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 1.9
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 12/89 (13%)
Query: 6 EDFREVTIYFSDIVGF------TTISAYSTPFEVVDLLNDL--YTCFDATINAYNVYKVE 57
E + F D F +A++ +++ L L Y + + V
Sbjct: 488 ERMTLFRMVFLDF-RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 58 TIGDAYMVVGGLPVRIPDHAD--QIATMA 84
I D + + + D +IA MA
Sbjct: 547 AILDFLPKIEENLICSK-YTDLLRIALMA 574
Score = 25.6 bits (55), Expect = 6.4
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 10 EVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFD 45
+V + + + ++P V+++L L D
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Score = 25.2 bits (54), Expect = 7.9
Identities = 25/158 (15%), Positives = 40/158 (25%), Gaps = 78/158 (49%)
Query: 4 DPEDFREVTIYFSDIVGF---TTISA-----------YSTPFEVVDLL------------ 37
+P ++R+ F + F I S VV+ L
Sbjct: 367 EPAEYRK---MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 38 -----NDLYTCFDAT-------------INAYNV---YKVETIG----DAYMVVGGLPVR 72
+Y + ++ YN+ + + + D Y
Sbjct: 424 STISIPSIY--LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY-----SH 476
Query: 73 IPDHADQIA---------TMALDLLHHSGRF---KIRH 98
I H I + LD RF KIRH
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDF-----RFLEQKIRH 509
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold,
GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A
{Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O*
2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A*
3k2b_A* 3rvd_A* 2pkq_O*
Length = 337
Score = 25.5 bits (57), Expect = 4.8
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 14/60 (23%)
Query: 24 ISAYSTPFEVVDLLNDLYTCFDATINAY-----NVY-----KVETIGDAYMVVGGLPVRI 73
+P +VV ++ND ++ ++ V+T GD+ + V G +++
Sbjct: 21 HGRKDSPLDVV-VINDT---GGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKV 76
>3uhm_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase;
amidohydrolases, anti-bacterial agents, bacteria,
catalytic drug design; HET: RFN; 1.26A {Pseudomonas
aeruginosa} PDB: 2ves_A* 3u1y_A* 3p3e_A*
Length = 299
Score = 25.1 bits (56), Expect = 6.9
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 108 IGLHTGRPVS 117
+GLH+G V
Sbjct: 16 VGLHSGEKVY 25
>3p3g_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; lipid
A biosynthesis, lipid A synthesis, LPXC, BAAB sandwich
hydrolase; HET: 3P3 UKW; 1.65A {Escherichia coli} PDB:
3ps1_A* 3ps2_A* 3ps3_A* 3nzk_A*
Length = 300
Score = 25.1 bits (56), Expect = 7.5
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 108 IGLHTGRPVS 117
+GLHTG+ V+
Sbjct: 16 VGLHTGKKVT 25
>3p3c_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; lipid
A biosynthesis, lipid A synthesis, LPXC, BAAB sandwich
hydrolase; HET: 3P3; 1.25A {Aquifex aeolicus} PDB:
1xxe_A* 2jt2_A* 1p42_A* 1yh8_A* 1yhc_A* 3p76_A* 2ies_A*
2ier_A* 2o3z_A* 2j65_A* 2go3_A* 2go4_A*
Length = 274
Score = 25.1 bits (56), Expect = 7.9
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 108 IGLHTGRPVSKHLR 121
+G+HTG +
Sbjct: 15 VGIHTGEYSKLIIH 28
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.143 0.434
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,106,592
Number of extensions: 118639
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 27
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)