BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13824
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 103 bits (256), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 65/96 (67%)
Query: 111 SSQTFTVNYSANTFRMDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWS 170
+ + F ++YS ++F DG+PFR++SG HY R P+ W++ L K++ AGLNA+ TYV W+
Sbjct: 5 TQRMFEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWN 64
Query: 171 SHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSG 206
HE PG Y F DVEYF+RLA E GL V+L G
Sbjct: 65 FHEPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPG 100
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%)
Query: 122 NTFRMDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSF 181
+ F +DG+ F+ +SG HYFR P E W L +++ G N V TYV W+ HE G + F
Sbjct: 8 DDFYLDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHF 67
Query: 182 DGHRDVEYFMRLAAEEGLYVLL 203
+G D+E F+++A + GLY ++
Sbjct: 68 EGDLDLEKFLQIAQDLGLYAIV 89
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 111 SSQTFTVNYSANTFRMDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWS 170
S TF V NTF ++G PF + E HY R P+E W ++ ++ G N + YV W+
Sbjct: 4 SEGTFEV--GKNTFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWN 61
Query: 171 SHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSG 206
HE + G Y F G +D+ F RLA E G YV++ G
Sbjct: 62 FHEPEEGRYDFAGQKDIAAFCRLAQENGXYVIVRPG 97
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 58.2 bits (139), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 117 VNYSANTFRMDGRPFRFVSGEFHYFRSP-QERWREILRKIRSAGLNAVSTYVGWSSHEAQ 175
V + ++ ++G SGE H +R P + +I K+++ G N VS YV W+ E
Sbjct: 6 VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65
Query: 176 PGTYSFDGHRDVEYFMRLAAEEGLYVLLYSG 206
PG YS +G D++ F A E G+Y+L G
Sbjct: 66 PGHYSAEGIFDLQPFFDAAKEAGIYLLARPG 96
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 55.8 bits (133), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 117 VNYSANTFRMDGRPFRFVSGEFHYFRSP-QERWREILRKIRSAGLNAVSTYVGWSSHEAQ 175
V + ++ + G SGE H FR P + ++ KI++ G N VS YV W+ E +
Sbjct: 26 VTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGK 85
Query: 176 PGTYSFDGHRDVEYFMRLAAEEGLYVLLYSG 206
PG + DG +E F A + G+Y+L G
Sbjct: 86 PGRFRADGIFSLEPFFEAATKAGIYLLARPG 116
>pdb|1KWG|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase
pdb|1KWK|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase In Complex With Galactose
Length = 645
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 144 PQERWREILRKIRSAGLNAVST-YVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL 202
P+ERW+E R++R AGL+ V W+ E +PG + G D E LAA EGL V+
Sbjct: 12 PKERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEW-GWLD-EAIATLAA-EGLKVV 68
Query: 203 L 203
L
Sbjct: 69 L 69
>pdb|4B7R|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7R|B Chain B, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7R|C Chain C, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7R|D Chain D, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
Length = 387
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 20 ELNCCCQP----IRRKWVRLFENLTTNLGYFCWGKGTPQSHPNNMNRTSKWIFPVVMSSS 75
E+ C C+ R WV +NL +GY C G PN+ + PV + +
Sbjct: 205 EITCVCRDNWHGSNRPWVSFNQNLEYQIGYICSGIFGDNPRPNDKTGSCG---PVSSNGA 261
Query: 76 KGRHGHLFKF 85
G G FK+
Sbjct: 262 NGVKGFSFKY 271
>pdb|3NSS|A Chain A, The 2009 Pandemic H1n1 Neuraminidase N1 Lacks The
150-Cavity In Its Active Sites
pdb|3NSS|B Chain B, The 2009 Pandemic H1n1 Neuraminidase N1 Lacks The
150-Cavity In Its Active Sites
pdb|3TI3|A Chain A, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Laninamivir
pdb|3TI3|B Chain B, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Laninamivir
pdb|3TI4|A Chain A, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Laninamivir Octanoate
pdb|3TI4|B Chain B, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Laninamivir Octanoate
pdb|3TI5|A Chain A, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Zanamivir
pdb|3TI5|B Chain B, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Zanamivir
pdb|3TI6|A Chain A, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Oseltamivir
pdb|3TI6|B Chain B, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Oseltamivir
Length = 388
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 20 ELNCCCQP----IRRKWVRLFENLTTNLGYFCWGKGTPQSHPNNMNRTSKWIFPVVMSSS 75
E+ C C+ R WV +NL +GY C G PN+ + PV + +
Sbjct: 206 EITCVCRDNWHGSNRPWVSFNQNLEYQIGYICSGIFGDNPRPNDKTGSCG---PVSSNGA 262
Query: 76 KGRHGHLFKF 85
G G FK+
Sbjct: 263 NGVKGFSFKY 272
>pdb|4B7J|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7M|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7M|B Chain B, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7N|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
Length = 469
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 20 ELNCCCQP----IRRKWVRLFENLTTNLGYFCWGKGTPQSHPNNMNRTSKWIFPVVMSSS 75
E+ C C+ R WV +NL +GY C G PN+ + PV + +
Sbjct: 287 EITCVCRDNWHGSNRPWVSFNQNLEYQIGYICSGIFGDNPRPNDKTGSCG---PVSSNGA 343
Query: 76 KGRHGHLFKF 85
G G FK+
Sbjct: 344 NGVKGFSFKY 353
>pdb|4B7Q|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7Q|B Chain B, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7Q|C Chain C, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7Q|D Chain D, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
Length = 469
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 20 ELNCCCQP----IRRKWVRLFENLTTNLGYFCWGKGTPQSHPNNMNRTSKWIFPVVMSSS 75
E+ C C+ R WV +NL +GY C G PN+ + PV + +
Sbjct: 287 EITCVCRDNWHGSNRPWVSFNQNLEYQIGYICSGIFGDNPRPNDKTGSCG---PVSSNGA 343
Query: 76 KGRHGHLFKF 85
G G FK+
Sbjct: 344 NGVKGFSFKY 353
>pdb|3CKZ|A Chain A, N1 Neuraminidase H274y + Zanamivir
pdb|3CL0|A Chain A, N1 Neuraminidase H274y + Oseltamivir
Length = 385
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 20 ELNCCCQP----IRRKWVRLFENLTTNLGYFCWGKGTPQSHPNNMNRTSKWIFPVVMSSS 75
E+ C C+ R WV +NL +GY C G PN+ + PV + +
Sbjct: 205 EITCVCRDNWHGSNRPWVSFNQNLEYQIGYICSGVFGDNPRPNDGTGSCG---PVSSNGA 261
Query: 76 KGRHGHLFKF 85
G G FK+
Sbjct: 262 YGVKGFSFKY 271
>pdb|3CL2|A Chain A, N1 Neuraminidase N294s + Oseltamivir
pdb|3CL2|B Chain B, N1 Neuraminidase N294s + Oseltamivir
pdb|3CL2|C Chain C, N1 Neuraminidase N294s + Oseltamivir
pdb|3CL2|D Chain D, N1 Neuraminidase N294s + Oseltamivir
pdb|3CL2|E Chain E, N1 Neuraminidase N294s + Oseltamivir
pdb|3CL2|F Chain F, N1 Neuraminidase N294s + Oseltamivir
pdb|3CL2|G Chain G, N1 Neuraminidase N294s + Oseltamivir
pdb|3CL2|H Chain H, N1 Neuraminidase N294s + Oseltamivir
Length = 385
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 20 ELNCCCQPI----RRKWVRLFENLTTNLGYFCWGKGTPQSHPNNMNRTSKWIFPVVMSSS 75
E+ C C+ R WV +NL +GY C G PN+ + PV + +
Sbjct: 205 EITCVCRDSWHGSNRPWVSFNQNLEYQIGYICSGVFGDNPRPNDGTGSCG---PVSSNGA 261
Query: 76 KGRHGHLFKF 85
G G FK+
Sbjct: 262 YGVKGFSFKY 271
>pdb|2HTY|A Chain A, N1 Neuraminidase
pdb|2HTY|B Chain B, N1 Neuraminidase
pdb|2HTY|C Chain C, N1 Neuraminidase
pdb|2HTY|D Chain D, N1 Neuraminidase
pdb|2HTY|E Chain E, N1 Neuraminidase
pdb|2HTY|F Chain F, N1 Neuraminidase
pdb|2HTY|G Chain G, N1 Neuraminidase
pdb|2HTY|H Chain H, N1 Neuraminidase
pdb|2HU0|A Chain A, N1 Neuraminidase In Complex With Oseltamivir 1
pdb|2HU0|B Chain B, N1 Neuraminidase In Complex With Oseltamivir 1
pdb|2HU0|C Chain C, N1 Neuraminidase In Complex With Oseltamivir 1
pdb|2HU0|D Chain D, N1 Neuraminidase In Complex With Oseltamivir 1
pdb|2HU0|E Chain E, N1 Neuraminidase In Complex With Oseltamivir 1
pdb|2HU0|F Chain F, N1 Neuraminidase In Complex With Oseltamivir 1
pdb|2HU0|G Chain G, N1 Neuraminidase In Complex With Oseltamivir 1
pdb|2HU0|H Chain H, N1 Neuraminidase In Complex With Oseltamivir 1
pdb|2HU4|A Chain A, N1 Neuraminidase In Complex With Oseltamivir 2
pdb|2HU4|B Chain B, N1 Neuraminidase In Complex With Oseltamivir 2
pdb|2HU4|C Chain C, N1 Neuraminidase In Complex With Oseltamivir 2
pdb|2HU4|D Chain D, N1 Neuraminidase In Complex With Oseltamivir 2
pdb|2HU4|E Chain E, N1 Neuraminidase In Complex With Oseltamivir 2
pdb|2HU4|F Chain F, N1 Neuraminidase In Complex With Oseltamivir 2
pdb|2HU4|G Chain G, N1 Neuraminidase In Complex With Oseltamivir 2
pdb|2HU4|H Chain H, N1 Neuraminidase In Complex With Oseltamivir 2
Length = 387
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 20 ELNCCCQP----IRRKWVRLFENLTTNLGYFCWGKGTPQSHPNNMNRTSKWIFPVVMSSS 75
E+ C C+ R WV +NL +GY C G PN+ + PV + +
Sbjct: 205 EITCVCRDNWHGSNRPWVSFNQNLEYQIGYICSGVFGDNPRPNDGTGSCG---PVSSNGA 261
Query: 76 KGRHGHLFKF 85
G G FK+
Sbjct: 262 YGVKGFSFKY 271
>pdb|2HTV|A Chain A, N4 Neuraminidase
pdb|2HTV|B Chain B, N4 Neuraminidase
pdb|2HTW|A Chain A, N4 Neuraminidase In Complex With Dana
Length = 390
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 19 EELNCCCQP----IRRKWVRLFENLTTNLGYFCWGKGTPQSHPNNMNRTSKWIFPVVMSS 74
E + C C+ R W+R +L +GY C G +P M+ T P+ ++
Sbjct: 205 ENVECVCRDNWRGSNRPWIRFNSDLDYQIGYVC--SGVFGDNPRPMDSTGSCNSPI--NN 260
Query: 75 SKGRHGHLFKFIAILLVASVWI 96
KGR+G K + VWI
Sbjct: 261 GKGRYG--VKGFSFRYGDGVWI 280
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 12/135 (8%)
Query: 43 LGYFCWGKGTPQSHPNNMNRTSKWIFPVVMSSSKGRHGHLFKFIAILLVASVWICLRYGN 102
+G C+G+ P+S + M K V ++S G F + L ++ +
Sbjct: 176 IGAMCFGQHFPESS-DEMLSLVKNTHEFVETASSGNPLDFFPILRYLPNPALQRFKAFNQ 234
Query: 103 RIRRFHRPSSQTFTVNYSANTFR-MDGRPFRF------VSGEFHYFRSPQERWREILRKI 155
R F + + Q ++ N+ R + G F+ SG PQE+ ++ I
Sbjct: 235 RFLWFLQKTVQEHYQDFDKNSVRDITGALFKHSKKGPRASGNL----IPQEKIVNLVNDI 290
Query: 156 RSAGLNAVSTYVGWS 170
AG + V+T + WS
Sbjct: 291 FGAGFDTVTTAISWS 305
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 52 TPQSHPNNMNRTSKWIFPVVMSSSKGR--HGHLFKFIAILLVASVWICLRYGNRIRRFH 108
TP H + ++ +++ ++ + S G H+ A ++ SV IC++ G +I FH
Sbjct: 417 TPLMHNISGSKHKEFMIRIITNESNGEVLGVHMLGDSAPEIIQSVGICMKMGAKISDFH 475
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 52 TPQSHPNNMNRTSKWIFPVVMSSSKGR--HGHLFKFIAILLVASVWICLRYGNRIRRFH 108
TP H + ++ +++ ++ + S G H+ A ++ SV IC++ G +I FH
Sbjct: 417 TPLMHNISGSKHKEFMIRIITNESNGEVLGVHMLGDSAPEIIQSVGICMKMGAKISDFH 475
>pdb|3NDY|A Chain A, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDY|B Chain B, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDY|C Chain C, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDY|D Chain D, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDZ|A Chain A, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
pdb|3NDZ|B Chain B, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
pdb|3NDZ|C Chain C, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
pdb|3NDZ|D Chain D, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
Length = 345
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 151 ILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDG--HRDVEYFMRLAAEEGLYVLL 203
++ KI+ AG N + V W H Y+ D + VE A + +YV++
Sbjct: 47 MINKIKEAGFNTLRLPVTWDGHMGAAPEYTIDQTWMKRVEEIANYAFDNDMYVII 101
>pdb|3CYE|A Chain A, Cyrstal Structure Of The Native 1918 H1n1 Neuraminidase
From A Crystal With Lattice-Translocation Defects
pdb|3CYE|B Chain B, Cyrstal Structure Of The Native 1918 H1n1 Neuraminidase
From A Crystal With Lattice-Translocation Defects
Length = 387
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 29 RRKWVRLFENLTTNLGYFCWGKGTPQSHPNNMNRTSKWIFPVVMSSSKGRHGHLFKF 85
R WV +NL +GY C G PN+ + PV + + G G F++
Sbjct: 218 NRPWVSFDQNLDYQIGYICSGVFGDNPRPNDGTGSCG---PVSSNGANGIKGFSFRY 271
>pdb|3BEQ|A Chain A, Neuraminidase Of ABREVIG MISSION11918 H1N1 STRAIN
pdb|3BEQ|B Chain B, Neuraminidase Of ABREVIG MISSION11918 H1N1 STRAIN
pdb|3B7E|A Chain A, Neuraminidase Of ABREVIG MISSION11918 H1N1 STRAIN IN
COMPLEX WITH Zanamivir
pdb|3B7E|B Chain B, Neuraminidase Of ABREVIG MISSION11918 H1N1 STRAIN IN
COMPLEX WITH Zanamivir
Length = 385
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 29 RRKWVRLFENLTTNLGYFCWGKGTPQSHPNNMNRTSKWIFPVVMSSSKGRHGHLFKF 85
R WV +NL +GY C G PN+ + PV + + G G F++
Sbjct: 218 NRPWVSFDQNLDYQIGYICSGVFGDNPRPNDGTGSCG---PVSSNGANGIKGFSFRY 271
>pdb|3QHO|A Chain A, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHO|B Chain B, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHO|C Chain C, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 15/72 (20%)
Query: 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGT------YS-------FDGHRDVEYFM 191
+ W ++L +I+S G NA+ + + + +PGT YS D + +E +
Sbjct: 83 KRNWEDMLLQIKSLGFNAIR--LPFCTESVKPGTQPIGIDYSKNPDLRGLDSLQIMEKII 140
Query: 192 RLAAEEGLYVLL 203
+ A + G++VLL
Sbjct: 141 KKAGDLGIFVLL 152
>pdb|3QHN|A Chain A, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHN|B Chain B, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHN|C Chain C, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 15/72 (20%)
Query: 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGT------YS-------FDGHRDVEYFM 191
+ W ++L +I+S G NA+ + + + +PGT YS D + +E +
Sbjct: 83 KRNWEDMLLQIKSLGFNAIR--LPFCTESVKPGTQPIGIDYSKNPDLRGLDSLQIMEKII 140
Query: 192 RLAAEEGLYVLL 203
+ A + G++VLL
Sbjct: 141 KKAGDLGIFVLL 152
>pdb|3QHM|A Chain A, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHM|B Chain B, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHM|C Chain C, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 15/72 (20%)
Query: 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGT------YS-------FDGHRDVEYFM 191
+ W ++L +I+S G NA+ + + + +PGT YS D + +E +
Sbjct: 83 KRNWEDMLLQIKSLGFNAIR--LPFCTESVKPGTQPIGIDYSKNPDLRGLDSLQIMEKII 140
Query: 192 RLAAEEGLYVLL 203
+ A + G++VLL
Sbjct: 141 KKAGDLGIFVLL 152
>pdb|2ZUM|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|B Chain B, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|C Chain C, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
Length = 458
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 15/72 (20%)
Query: 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGT------YS-------FDGHRDVEYFM 191
+ W ++L +I+S G NA+ + + + +PGT YS D + +E +
Sbjct: 83 KRNWEDMLLQIKSLGFNAIR--LPFCTESVKPGTQPIGIDYSKNPDLRGLDSLQIMEKII 140
Query: 192 RLAAEEGLYVLL 203
+ A + G++VLL
Sbjct: 141 KKAGDLGIFVLL 152
>pdb|3AXX|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|3AXX|B Chain B, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|3AXX|C Chain C, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
Length = 458
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 15/72 (20%)
Query: 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGT------YS-------FDGHRDVEYFM 191
+ W ++L +I+S G NA+ + + + +PGT YS D + +E +
Sbjct: 83 KRNWEDMLLQIKSLGFNAIR--LPFCTESVKPGTQPIGIDYSKNPDLRGLDSLQIMEKII 140
Query: 192 RLAAEEGLYVLL 203
+ A + G++VLL
Sbjct: 141 KKAGDLGIFVLL 152
>pdb|4DM2|A Chain A, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM2|B Chain B, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM2|C Chain C, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
Length = 377
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 15/72 (20%)
Query: 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGT------YS-------FDGHRDVEYFM 191
+ W ++L +I+S G NA+ + + + +PGT YS D + +E +
Sbjct: 50 KRNWEDMLLQIKSLGFNAIR--LPFCTESVKPGTQPIGIDYSKNPDLRGLDSLQIMEKII 107
Query: 192 RLAAEEGLYVLL 203
+ A + G++VLL
Sbjct: 108 KKAGDLGIFVLL 119
>pdb|4DM1|A Chain A, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM1|B Chain B, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM1|C Chain C, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
Length = 377
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 15/72 (20%)
Query: 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGT------YS-------FDGHRDVEYFM 191
+ W ++L +I+S G NA+ + + + +PGT YS D + +E +
Sbjct: 50 KRNWEDMLLQIKSLGFNAIR--LPFCTESVKPGTQPIGIDYSKNPDLRGLDSLQIMEKII 107
Query: 192 RLAAEEGLYVLL 203
+ A + G++VLL
Sbjct: 108 KKAGDLGIFVLL 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.473
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,539,422
Number of Sequences: 62578
Number of extensions: 309696
Number of successful extensions: 840
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 833
Number of HSP's gapped (non-prelim): 34
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)