Query psy13824
Match_columns 226
No_of_seqs 190 out of 1166
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 21:23:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 2.4E-41 5.2E-46 338.7 14.0 112 113-225 26-137 (840)
2 PF01301 Glyco_hydro_35: Glyco 100.0 2.5E-41 5.4E-46 306.3 7.8 103 123-226 1-103 (319)
3 KOG0496|consensus 100.0 4.4E-36 9.6E-41 293.4 10.3 111 114-225 17-127 (649)
4 COG1874 LacA Beta-galactosidas 99.9 1.2E-25 2.7E-30 222.2 8.4 99 118-226 2-101 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.7 1.4E-17 3.1E-22 151.9 3.0 78 137-226 1-79 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 98.9 6.6E-09 1.4E-13 92.0 9.1 73 117-205 1-79 (298)
7 PRK10150 beta-D-glucuronidase; 98.6 1.8E-07 3.9E-12 91.0 10.0 73 116-204 277-355 (604)
8 PF00150 Cellulase: Cellulase 98.6 8E-08 1.7E-12 81.4 6.2 80 126-207 3-84 (281)
9 PRK10340 ebgA cryptic beta-D-g 98.4 1E-06 2.2E-11 91.6 10.4 73 116-204 319-397 (1021)
10 PRK09525 lacZ beta-D-galactosi 98.4 1.2E-06 2.5E-11 91.4 10.3 74 116-205 335-414 (1027)
11 TIGR03356 BGL beta-galactosida 98.2 8.4E-07 1.8E-11 84.0 4.2 59 146-204 54-113 (427)
12 COG3250 LacZ Beta-galactosidas 98.2 7.4E-06 1.6E-10 83.9 9.9 73 116-204 285-363 (808)
13 PF03198 Glyco_hydro_72: Gluca 97.9 6.7E-05 1.5E-09 69.9 8.7 80 116-208 10-102 (314)
14 PF01373 Glyco_hydro_14: Glyco 97.8 2.4E-05 5.1E-10 74.9 4.4 76 147-225 17-96 (402)
15 PLN02801 beta-amylase 97.6 0.00013 2.8E-09 71.8 7.0 79 144-225 35-117 (517)
16 PLN02803 beta-amylase 97.6 0.00013 2.8E-09 72.2 7.0 79 144-225 105-187 (548)
17 PLN00197 beta-amylase; Provisi 97.6 0.00014 3E-09 72.2 7.0 79 144-225 125-207 (573)
18 PLN02161 beta-amylase 97.6 0.00015 3.3E-09 71.4 7.1 78 145-225 116-197 (531)
19 PF13204 DUF4038: Protein of u 97.5 0.00017 3.8E-09 65.1 6.0 83 121-203 2-106 (289)
20 PF00232 Glyco_hydro_1: Glycos 97.5 5.1E-05 1.1E-09 72.1 2.6 58 146-203 58-117 (455)
21 PLN02705 beta-amylase 97.5 0.00021 4.5E-09 71.8 6.7 79 144-225 266-348 (681)
22 PLN02905 beta-amylase 97.5 0.00023 5E-09 71.7 6.8 78 145-225 285-366 (702)
23 PRK15014 6-phospho-beta-glucos 97.3 0.00018 3.9E-09 69.6 4.1 58 146-203 69-128 (477)
24 PRK09852 cryptic 6-phospho-bet 97.3 0.00021 4.6E-09 69.2 4.2 58 146-203 71-130 (474)
25 PF14488 DUF4434: Domain of un 97.3 0.0008 1.7E-08 56.8 6.8 62 141-204 15-84 (166)
26 PRK13511 6-phospho-beta-galact 97.2 0.00035 7.5E-09 67.3 4.7 58 146-203 54-112 (469)
27 TIGR01233 lacG 6-phospho-beta- 97.2 0.00041 8.8E-09 66.9 4.9 58 146-203 53-111 (467)
28 PRK09593 arb 6-phospho-beta-gl 97.2 0.00043 9.4E-09 67.0 4.6 58 146-203 73-132 (478)
29 PLN02814 beta-glucosidase 97.2 0.00035 7.6E-09 68.2 3.9 58 146-203 77-135 (504)
30 PLN02998 beta-glucosidase 97.1 0.00037 8.1E-09 67.9 3.7 59 145-203 81-140 (497)
31 PRK09589 celA 6-phospho-beta-g 97.1 0.00056 1.2E-08 66.2 4.2 58 146-203 67-126 (476)
32 PLN02849 beta-glucosidase 96.9 0.00079 1.7E-08 65.7 3.9 59 145-203 78-137 (503)
33 COG2730 BglC Endoglucanase [Ca 96.4 0.0061 1.3E-07 57.5 5.5 59 145-204 67-135 (407)
34 COG2723 BglB Beta-glucosidase/ 96.3 0.0048 1E-07 60.3 4.7 59 145-203 58-118 (460)
35 PF00331 Glyco_hydro_10: Glyco 96.2 0.0031 6.7E-08 57.7 2.5 80 133-225 11-92 (320)
36 PF07745 Glyco_hydro_53: Glyco 95.5 0.024 5.1E-07 53.2 5.2 55 149-210 27-82 (332)
37 smart00642 Aamy Alpha-amylase 95.3 0.049 1.1E-06 45.7 6.2 60 145-204 18-89 (166)
38 PRK09936 hypothetical protein; 94.9 0.08 1.7E-06 49.4 7.0 56 142-203 34-90 (296)
39 PF05913 DUF871: Bacterial pro 94.4 0.059 1.3E-06 50.9 4.7 71 134-210 2-72 (357)
40 PF00128 Alpha-amylase: Alpha 94.3 0.045 9.8E-07 46.3 3.5 58 148-205 6-72 (316)
41 PRK09441 cytoplasmic alpha-amy 93.8 0.1 2.2E-06 50.1 5.1 67 138-204 7-100 (479)
42 PF02638 DUF187: Glycosyl hydr 92.2 0.63 1.4E-05 42.8 7.7 61 144-205 17-90 (311)
43 cd06592 GH31_glucosidase_KIAA1 91.9 0.71 1.5E-05 41.9 7.6 70 140-212 24-97 (303)
44 COG3867 Arabinogalactan endo-1 91.8 0.49 1.1E-05 45.2 6.6 57 148-205 65-124 (403)
45 PLN02447 1,4-alpha-glucan-bran 91.4 0.45 9.7E-06 49.4 6.4 58 145-205 250-320 (758)
46 cd06593 GH31_xylosidase_YicI Y 91.3 1.5 3.2E-05 39.5 9.0 68 143-211 21-92 (308)
47 COG1649 Uncharacterized protei 91.3 0.74 1.6E-05 44.8 7.4 81 143-225 61-157 (418)
48 TIGR01515 branching_enzym alph 91.0 0.54 1.2E-05 46.9 6.4 56 148-204 158-225 (613)
49 PF14871 GHL6: Hypothetical gl 91.0 0.9 2E-05 37.2 6.6 70 149-224 3-81 (132)
50 PRK12313 glycogen branching en 90.9 0.51 1.1E-05 47.1 6.2 55 149-204 173-239 (633)
51 PRK10933 trehalose-6-phosphate 89.6 0.7 1.5E-05 45.7 5.8 58 145-204 32-100 (551)
52 cd06591 GH31_xylosidase_XylS X 89.4 1.5 3.3E-05 40.1 7.4 67 144-211 22-92 (319)
53 TIGR02403 trehalose_treC alpha 89.2 0.56 1.2E-05 46.1 4.8 61 144-205 25-95 (543)
54 COG3693 XynA Beta-1,4-xylanase 88.9 0.56 1.2E-05 44.7 4.3 61 155-225 55-115 (345)
55 cd06595 GH31_xylosidase_XylS-l 88.7 2.2 4.8E-05 38.5 7.9 67 144-210 23-99 (292)
56 TIGR02402 trehalose_TreZ malto 87.9 0.96 2.1E-05 44.6 5.5 56 146-204 111-179 (542)
57 PRK10785 maltodextrin glucosid 87.8 1.1 2.3E-05 44.7 5.8 60 145-204 178-245 (598)
58 cd06600 GH31_MGAM-like This fa 87.7 2.3 4.9E-05 39.0 7.4 66 144-212 22-91 (317)
59 TIGR02456 treS_nterm trehalose 87.1 1.3 2.7E-05 43.4 5.7 60 144-204 26-95 (539)
60 cd06598 GH31_transferase_CtsZ 87.0 3.1 6.7E-05 38.0 7.9 68 144-211 22-96 (317)
61 PRK09505 malS alpha-amylase; R 87.0 1.2 2.6E-05 45.6 5.7 60 146-205 230-312 (683)
62 cd06599 GH31_glycosidase_Aec37 86.9 3.7 8.1E-05 37.5 8.3 67 145-211 28-99 (317)
63 cd06604 GH31_glucosidase_II_Ma 86.8 3 6.5E-05 38.3 7.7 66 144-212 22-91 (339)
64 PF13200 DUF4015: Putative gly 86.7 2.4 5.2E-05 39.8 7.1 66 144-209 11-85 (316)
65 cd04908 ACT_Bt0572_1 N-termina 86.6 3.6 7.7E-05 28.7 6.3 55 145-203 12-66 (66)
66 PRK05402 glycogen branching en 86.6 1.3 2.8E-05 45.2 5.6 56 149-204 268-334 (726)
67 PF13199 Glyco_hydro_66: Glyco 86.0 1.4 3.1E-05 44.2 5.5 61 144-204 116-189 (559)
68 cd06602 GH31_MGAM_SI_GAA This 85.8 3 6.4E-05 38.7 7.2 74 138-212 13-93 (339)
69 TIGR02104 pulA_typeI pullulana 85.8 1.3 2.9E-05 44.0 5.2 54 148-204 166-248 (605)
70 cd06603 GH31_GANC_GANAB_alpha 84.9 4 8.6E-05 37.6 7.5 66 144-212 22-91 (339)
71 PRK13210 putative L-xylulose 5 84.7 1.7 3.7E-05 37.6 4.8 54 146-202 16-69 (284)
72 cd06589 GH31 The enzymes of gl 84.5 3.3 7.2E-05 36.6 6.6 65 144-209 22-90 (265)
73 TIGR02401 trehalose_TreY malto 84.3 2.2 4.7E-05 44.9 6.1 62 145-206 15-86 (825)
74 PLN02361 alpha-amylase 84.2 4.2 9.2E-05 39.1 7.6 59 146-204 29-95 (401)
75 KOG2230|consensus 84.2 2.6 5.6E-05 43.5 6.4 68 121-202 327-399 (867)
76 PRK14507 putative bifunctional 84.1 2.1 4.5E-05 48.2 6.1 64 144-207 756-829 (1693)
77 PLN02960 alpha-amylase 84.1 2.5 5.4E-05 44.9 6.4 58 148-205 419-486 (897)
78 PF01229 Glyco_hydro_39: Glyco 83.9 1.7 3.8E-05 41.9 4.9 66 139-210 32-109 (486)
79 PRK14511 maltooligosyl trehalo 83.5 3.1 6.7E-05 44.1 6.8 63 143-208 17-92 (879)
80 PRK12568 glycogen branching en 83.3 2.8 6E-05 43.5 6.3 55 149-205 273-339 (730)
81 KOG1065|consensus 81.7 3.9 8.5E-05 43.0 6.7 72 138-214 300-380 (805)
82 PF01055 Glyco_hydro_31: Glyco 81.5 5.9 0.00013 37.1 7.4 70 144-214 41-112 (441)
83 COG0296 GlgB 1,4-alpha-glucan 81.1 3.8 8.3E-05 41.9 6.3 57 144-204 163-233 (628)
84 PRK14510 putative bifunctional 81.0 2.3 4.9E-05 46.2 5.0 55 150-204 191-266 (1221)
85 COG3589 Uncharacterized conser 80.1 3.3 7.2E-05 39.8 5.2 72 134-212 4-76 (360)
86 PRK13398 3-deoxy-7-phosphohept 79.8 14 0.00029 33.7 8.8 76 123-204 20-97 (266)
87 PLN00196 alpha-amylase; Provis 79.5 4.3 9.3E-05 39.2 5.8 58 147-204 45-111 (428)
88 cd06601 GH31_lyase_GLase GLase 79.3 8.6 0.00019 35.9 7.6 71 138-211 13-90 (332)
89 TIGR00433 bioB biotin syntheta 79.3 2.9 6.3E-05 36.8 4.3 49 149-201 123-174 (296)
90 PRK01060 endonuclease IV; Prov 78.9 6.6 0.00014 34.2 6.3 59 148-210 14-74 (281)
91 PRK08673 3-deoxy-7-phosphohept 78.6 9.2 0.0002 36.1 7.6 75 123-204 86-163 (335)
92 TIGR03234 OH-pyruv-isom hydrox 78.3 5.5 0.00012 34.2 5.6 43 147-203 15-57 (254)
93 cd02742 GH20_hexosaminidase Be 78.3 7.2 0.00016 35.4 6.6 59 143-204 13-91 (303)
94 PRK00042 tpiA triosephosphate 78.0 4.9 0.00011 36.3 5.4 48 151-208 78-129 (250)
95 PF03659 Glyco_hydro_71: Glyco 77.9 9.2 0.0002 36.6 7.4 54 143-205 14-67 (386)
96 PRK14706 glycogen branching en 77.8 5.2 0.00011 40.6 6.1 53 149-204 170-236 (639)
97 PRK14705 glycogen branching en 77.3 5.4 0.00012 43.7 6.3 55 150-204 770-834 (1224)
98 PRK03705 glycogen debranching 76.7 4.1 8.8E-05 41.6 5.0 54 151-204 184-261 (658)
99 TIGR00542 hxl6Piso_put hexulos 76.3 4.7 0.0001 35.3 4.7 59 145-206 15-74 (279)
100 COG0366 AmyA Glycosidases [Car 76.1 3.7 8E-05 38.0 4.2 53 149-204 32-96 (505)
101 TIGR02100 glgX_debranch glycog 76.0 3.9 8.5E-05 41.8 4.7 54 151-204 189-264 (688)
102 cd06594 GH31_glucosidase_YihQ 75.8 17 0.00037 33.4 8.4 69 144-212 21-98 (317)
103 PRK10658 putative alpha-glucos 75.6 13 0.00029 38.0 8.3 68 143-211 280-351 (665)
104 PF01261 AP_endonuc_2: Xylose 74.8 3.5 7.6E-05 33.0 3.3 66 145-211 70-138 (213)
105 cd06564 GH20_DspB_LnbB-like Gl 74.8 11 0.00025 34.4 7.0 59 143-204 14-101 (326)
106 PF01791 DeoC: DeoC/LacD famil 74.7 1.7 3.7E-05 37.7 1.5 58 149-211 79-136 (236)
107 PF14587 Glyco_hydr_30_2: O-Gl 74.4 2.4 5.3E-05 41.0 2.6 43 173-225 92-134 (384)
108 cd01299 Met_dep_hydrolase_A Me 74.3 11 0.00024 33.5 6.6 58 144-204 118-179 (342)
109 PRK14566 triosephosphate isome 72.0 9.2 0.0002 35.0 5.6 76 126-207 62-137 (260)
110 PF02679 ComA: (2R)-phospho-3- 72.0 6.1 0.00013 36.0 4.4 63 134-207 72-135 (244)
111 TIGR02102 pullulan_Gpos pullul 71.9 7 0.00015 42.5 5.5 20 185-204 555-574 (1111)
112 cd00311 TIM Triosephosphate is 71.7 8.7 0.00019 34.5 5.3 52 151-208 76-127 (242)
113 cd07944 DRE_TIM_HOA_like 4-hyd 71.6 9.4 0.0002 34.3 5.5 71 136-206 10-81 (266)
114 cd06565 GH20_GcnA-like Glycosy 71.4 13 0.00029 33.9 6.5 57 144-204 15-79 (301)
115 TIGR03849 arch_ComA phosphosul 71.2 9.3 0.0002 34.7 5.4 63 134-207 59-122 (237)
116 cd06597 GH31_transferase_CtsY 71.0 20 0.00042 33.4 7.6 74 138-211 13-111 (340)
117 cd07937 DRE_TIM_PC_TC_5S Pyruv 70.9 14 0.00031 33.1 6.5 53 139-203 84-136 (275)
118 COG3934 Endo-beta-mannanase [C 70.7 1.8 3.9E-05 43.5 0.8 79 123-204 3-86 (587)
119 TIGR00419 tim triosephosphate 70.3 11 0.00024 33.2 5.5 45 151-205 73-117 (205)
120 PF02065 Melibiase: Melibiase; 70.1 25 0.00053 33.9 8.3 88 137-224 49-144 (394)
121 PRK09856 fructoselysine 3-epim 69.1 6.8 0.00015 33.9 4.0 61 145-209 89-154 (275)
122 PLN02784 alpha-amylase 69.1 11 0.00023 40.3 6.0 58 146-204 521-587 (894)
123 PRK09875 putative hydrolase; P 68.5 19 0.00041 33.2 6.9 63 145-225 33-95 (292)
124 PLN02429 triosephosphate isome 67.7 11 0.00025 35.5 5.4 50 149-208 137-190 (315)
125 cd06568 GH20_SpHex_like A subg 67.1 17 0.00038 33.7 6.4 59 143-204 15-94 (329)
126 cd06563 GH20_chitobiase-like T 66.4 21 0.00045 33.3 6.8 59 143-204 15-105 (357)
127 PRK09989 hypothetical protein; 65.8 17 0.00036 31.5 5.7 42 148-203 17-58 (258)
128 PF00728 Glyco_hydro_20: Glyco 65.8 15 0.00032 33.1 5.5 59 143-204 15-92 (351)
129 PF13380 CoA_binding_2: CoA bi 65.0 23 0.00049 27.9 5.9 45 142-202 62-106 (116)
130 PRK14565 triosephosphate isome 64.7 15 0.00033 33.1 5.4 49 151-209 77-129 (237)
131 COG1306 Uncharacterized conser 64.7 21 0.00046 34.4 6.5 62 145-209 76-148 (400)
132 PRK11572 copper homeostasis pr 64.1 15 0.00032 33.6 5.2 70 134-203 61-146 (248)
133 PRK07094 biotin synthase; Prov 63.8 7 0.00015 35.2 3.1 17 145-161 164-180 (323)
134 PRK13209 L-xylulose 5-phosphat 62.9 13 0.00028 32.3 4.6 54 146-202 21-74 (283)
135 PLN02389 biotin synthase 62.6 12 0.00025 35.8 4.5 17 149-165 178-194 (379)
136 PLN02763 hydrolase, hydrolyzin 62.3 40 0.00086 36.5 8.7 75 138-213 190-269 (978)
137 cd00019 AP2Ec AP endonuclease 62.2 34 0.00075 29.8 7.1 62 142-209 7-69 (279)
138 PF02228 Gag_p19: Major core p 62.1 3.3 7.1E-05 32.6 0.6 39 145-200 21-59 (92)
139 PRK12331 oxaloacetate decarbox 62.1 26 0.00056 34.3 6.8 55 138-204 88-142 (448)
140 PF00120 Gln-synt_C: Glutamine 62.0 29 0.00064 30.6 6.6 62 145-211 68-141 (259)
141 cd04882 ACT_Bt0572_2 C-termina 61.9 25 0.00054 23.4 4.9 55 145-201 10-64 (65)
142 PRK09997 hydroxypyruvate isome 61.9 20 0.00044 31.0 5.5 49 138-203 10-58 (258)
143 TIGR03551 F420_cofH 7,8-dideme 61.7 7.1 0.00015 35.9 2.8 50 149-201 141-195 (343)
144 PRK13210 putative L-xylulose 5 60.9 14 0.00031 31.8 4.4 62 145-207 93-155 (284)
145 TIGR02201 heptsyl_trn_III lipo 60.1 35 0.00075 30.7 6.9 69 129-197 181-261 (344)
146 PRK09856 fructoselysine 3-epim 59.7 27 0.00058 30.2 5.9 53 146-203 13-65 (275)
147 PF07755 DUF1611: Protein of u 59.7 6.9 0.00015 36.6 2.4 60 128-202 32-91 (301)
148 smart00518 AP2Ec AP endonuclea 59.5 32 0.0007 29.7 6.4 19 143-161 42-60 (273)
149 PLN02877 alpha-amylase/limit d 59.2 20 0.00043 38.7 5.8 20 185-204 466-485 (970)
150 PRK08599 coproporphyrinogen II 58.9 9.9 0.00021 35.2 3.3 18 150-167 101-118 (377)
151 TIGR02195 heptsyl_trn_II lipop 58.4 29 0.00064 30.9 6.1 80 128-207 173-279 (334)
152 cd06570 GH20_chitobiase-like_1 57.8 35 0.00075 31.6 6.6 59 143-204 15-87 (311)
153 PRK09997 hydroxypyruvate isome 57.7 17 0.00036 31.5 4.3 60 145-205 84-144 (258)
154 TIGR01531 glyc_debranch glycog 57.6 16 0.00036 40.8 5.1 91 113-204 95-204 (1464)
155 cd07944 DRE_TIM_HOA_like 4-hyd 57.3 21 0.00046 32.0 5.0 43 149-203 85-127 (266)
156 KOG0470|consensus 57.3 13 0.00028 39.0 4.0 57 148-204 257-330 (757)
157 PRK15492 triosephosphate isome 57.1 23 0.0005 32.3 5.2 53 149-207 84-136 (260)
158 PTZ00333 triosephosphate isome 57.1 24 0.00052 32.0 5.3 52 151-208 81-132 (255)
159 PF10566 Glyco_hydro_97: Glyco 57.0 30 0.00065 32.0 6.0 61 143-204 29-92 (273)
160 TIGR01698 PUNP purine nucleoti 56.1 27 0.00058 31.5 5.4 84 125-210 47-153 (237)
161 COG1099 Predicted metal-depend 55.7 6.4 0.00014 36.2 1.4 65 149-222 14-81 (254)
162 PRK10422 lipopolysaccharide co 55.2 55 0.0012 29.7 7.4 65 130-197 184-263 (352)
163 KOG0626|consensus 55.1 19 0.00042 36.3 4.7 58 146-203 91-151 (524)
164 PLN02561 triosephosphate isome 55.0 25 0.00054 32.0 5.1 54 149-208 78-131 (253)
165 TIGR02631 xylA_Arthro xylose i 54.7 19 0.0004 34.3 4.4 52 144-202 30-85 (382)
166 PTZ00372 endonuclease 4-like p 54.0 32 0.0007 33.6 6.0 86 123-209 150-243 (413)
167 PRK10964 ADP-heptose:LPS hepto 53.0 37 0.0008 30.3 5.8 77 128-207 177-264 (322)
168 PRK05660 HemN family oxidoredu 53.0 14 0.0003 34.6 3.2 48 150-200 108-158 (378)
169 smart00518 AP2Ec AP endonuclea 52.9 45 0.00098 28.8 6.2 61 148-214 12-73 (273)
170 TIGR00542 hxl6Piso_put hexulos 52.8 25 0.00055 30.7 4.6 64 146-210 94-160 (279)
171 PLN02231 alanine transaminase 52.6 81 0.0018 31.2 8.6 59 142-204 252-310 (534)
172 TIGR02103 pullul_strch alpha-1 52.6 26 0.00056 37.4 5.4 20 185-204 404-423 (898)
173 COG1891 Uncharacterized protei 52.5 4.1 8.9E-05 36.6 -0.3 66 130-203 115-185 (235)
174 COG2179 Predicted hydrolase of 52.3 29 0.00062 30.6 4.8 44 151-203 19-67 (175)
175 smart00481 POLIIIAc DNA polyme 52.2 58 0.0013 22.5 5.6 44 147-203 16-59 (67)
176 cd03789 GT1_LPS_heptosyltransf 52.1 48 0.001 28.7 6.3 79 129-207 122-209 (279)
177 TIGR03700 mena_SCO4494 putativ 52.1 12 0.00025 34.8 2.6 23 143-165 185-207 (351)
178 cd02810 DHOD_DHPD_FMN Dihydroo 51.9 82 0.0018 27.8 7.8 24 144-167 109-132 (289)
179 PRK14040 oxaloacetate decarbox 51.7 36 0.00078 34.6 6.0 52 138-201 89-140 (593)
180 cd06562 GH20_HexA_HexB-like Be 51.4 51 0.0011 30.7 6.6 59 143-204 15-89 (348)
181 cd00019 AP2Ec AP endonuclease 51.3 23 0.00051 30.8 4.2 64 145-209 84-147 (279)
182 TIGR02455 TreS_stutzeri trehal 51.3 31 0.00067 36.0 5.6 54 152-205 80-150 (688)
183 PF04909 Amidohydro_2: Amidohy 50.5 44 0.00096 27.8 5.6 55 145-206 83-138 (273)
184 PRK12595 bifunctional 3-deoxy- 50.4 1.5E+02 0.0033 28.2 9.7 76 123-204 111-188 (360)
185 PRK14567 triosephosphate isome 50.4 34 0.00074 31.2 5.2 52 151-208 77-128 (253)
186 PF02606 LpxK: Tetraacyldisacc 50.3 31 0.00067 32.2 5.0 58 125-198 224-281 (326)
187 TIGR01361 DAHP_synth_Bsub phos 50.2 50 0.0011 29.8 6.2 75 123-204 18-95 (260)
188 TIGR03234 OH-pyruv-isom hydrox 50.2 27 0.00059 29.9 4.4 60 145-205 83-143 (254)
189 PRK15108 biotin synthase; Prov 50.0 67 0.0015 30.0 7.2 59 142-207 75-133 (345)
190 smart00729 Elp3 Elongator prot 49.6 35 0.00077 26.8 4.6 47 145-200 135-182 (216)
191 PRK10426 alpha-glucosidase; Pr 49.5 61 0.0013 33.0 7.3 68 144-211 219-295 (635)
192 COG0149 TpiA Triosephosphate i 49.2 35 0.00076 31.3 5.1 74 130-209 59-132 (251)
193 PF01075 Glyco_transf_9: Glyco 49.1 23 0.00051 29.8 3.7 78 127-207 103-194 (247)
194 PLN02607 1-aminocyclopropane-1 49.1 1.1E+02 0.0025 29.2 8.8 61 140-204 179-239 (447)
195 PRK13962 bifunctional phosphog 48.9 33 0.00071 35.4 5.3 71 127-207 449-523 (645)
196 PF02126 PTE: Phosphotriestera 48.7 37 0.0008 31.5 5.3 62 146-225 38-99 (308)
197 PRK08508 biotin synthase; Prov 48.6 29 0.00062 31.2 4.4 46 145-200 133-181 (279)
198 PLN02692 alpha-galactosidase 48.4 2.4E+02 0.0052 27.7 10.9 75 138-212 65-150 (412)
199 cd06569 GH20_Sm-chitobiase-lik 48.3 56 0.0012 31.8 6.6 59 143-204 19-116 (445)
200 PRK12858 tagatose 1,6-diphosph 48.3 20 0.00044 33.9 3.5 70 137-210 98-168 (340)
201 PRK15447 putative protease; Pr 47.9 38 0.00082 31.0 5.1 55 142-203 11-66 (301)
202 PRK06256 biotin synthase; Vali 47.7 18 0.0004 32.7 3.1 16 150-165 153-168 (336)
203 PTZ00377 alanine aminotransfer 46.9 1.3E+02 0.0028 28.7 8.8 60 141-204 198-257 (481)
204 cd04883 ACT_AcuB C-terminal AC 46.8 91 0.002 21.2 6.1 56 146-202 13-69 (72)
205 cd01335 Radical_SAM Radical SA 46.5 30 0.00066 26.7 3.8 51 149-202 88-142 (204)
206 cd04886 ACT_ThrD-II-like C-ter 46.3 83 0.0018 20.7 6.5 58 145-202 9-72 (73)
207 KOG0259|consensus 45.5 28 0.00061 34.4 4.1 58 142-203 179-237 (447)
208 TIGR00676 fadh2 5,10-methylene 45.3 56 0.0012 29.3 5.7 67 132-211 126-198 (272)
209 TIGR00677 fadh2_euk methylenet 45.2 41 0.00089 30.6 4.9 81 132-225 130-222 (281)
210 PRK13209 L-xylulose 5-phosphat 44.8 31 0.00067 30.0 3.9 61 146-207 99-160 (283)
211 PLN03132 NADH dehydrogenase (u 44.5 28 0.00061 34.5 4.0 64 142-214 131-208 (461)
212 PRK08208 coproporphyrinogen II 44.4 26 0.00056 33.4 3.6 49 149-201 141-193 (430)
213 PF00155 Aminotran_1_2: Aminot 44.2 41 0.00088 29.8 4.6 61 140-204 127-187 (363)
214 PF03932 CutC: CutC family; I 44.0 48 0.001 29.2 5.0 69 135-203 61-145 (201)
215 cd04726 KGPDC_HPS 3-Keto-L-gul 43.6 80 0.0017 26.1 6.1 46 150-208 68-114 (202)
216 PRK12677 xylose isomerase; Pro 43.4 45 0.00097 31.8 5.0 53 147-205 32-88 (384)
217 PRK08446 coproporphyrinogen II 43.3 30 0.00065 32.0 3.8 49 149-200 98-149 (350)
218 TIGR03699 mena_SCO4550 menaqui 43.3 16 0.00035 33.3 2.0 48 142-199 177-224 (340)
219 PF14307 Glyco_tran_WbsX: Glyc 42.6 57 0.0012 30.2 5.5 45 120-167 150-196 (345)
220 PF00121 TIM: Triosephosphate 42.5 16 0.00036 32.7 1.9 53 149-207 74-126 (244)
221 COG0156 BioF 7-keto-8-aminopel 42.3 66 0.0014 31.1 6.0 68 125-204 136-207 (388)
222 TIGR00514 accC acetyl-CoA carb 42.3 74 0.0016 30.2 6.3 55 149-203 15-79 (449)
223 TIGR01108 oadA oxaloacetate de 41.8 74 0.0016 32.2 6.5 53 139-203 84-136 (582)
224 PLN02450 1-aminocyclopropane-1 41.7 1.6E+02 0.0034 28.4 8.5 59 141-203 171-229 (468)
225 TIGR00423 radical SAM domain p 41.7 27 0.00058 31.6 3.2 46 149-201 107-161 (309)
226 PF01261 AP_endonuc_2: Xylose 41.7 86 0.0019 25.0 5.8 60 145-206 26-93 (213)
227 PRK08195 4-hyroxy-2-oxovalerat 41.3 72 0.0016 29.8 6.0 43 149-203 91-133 (337)
228 PRK06111 acetyl-CoA carboxylas 41.2 1E+02 0.0022 28.8 7.0 67 129-206 3-81 (450)
229 PRK04302 triosephosphate isome 41.1 65 0.0014 27.8 5.3 49 150-208 76-124 (223)
230 cd07943 DRE_TIM_HOA 4-hydroxy- 41.1 64 0.0014 28.5 5.4 43 150-204 89-131 (263)
231 TIGR01210 conserved hypothetic 40.9 40 0.00087 31.0 4.2 18 149-166 117-135 (313)
232 PRK13125 trpA tryptophan synth 40.7 70 0.0015 28.1 5.5 47 149-207 91-138 (244)
233 TIGR03128 RuMP_HxlA 3-hexulose 40.7 74 0.0016 26.5 5.5 44 151-207 68-112 (206)
234 PRK01060 endonuclease IV; Prov 40.5 91 0.002 27.1 6.2 19 147-165 90-108 (281)
235 PRK05904 coproporphyrinogen II 40.4 34 0.00074 32.0 3.7 49 149-200 103-154 (353)
236 TIGR00539 hemN_rel putative ox 39.8 39 0.00085 31.2 4.0 48 149-200 100-151 (360)
237 PLN02880 tyrosine decarboxylas 39.7 80 0.0017 30.9 6.3 56 142-204 220-275 (490)
238 PRK09282 pyruvate carboxylase 39.7 66 0.0014 32.6 5.8 54 138-203 88-141 (592)
239 cd06167 LabA_like LabA_like pr 39.7 36 0.00078 26.7 3.2 58 146-203 52-128 (149)
240 PRK13347 coproporphyrinogen II 39.4 33 0.00072 32.9 3.5 49 149-200 152-203 (453)
241 TIGR01210 conserved hypothetic 39.4 50 0.0011 30.4 4.6 77 144-225 153-234 (313)
242 TIGR03471 HpnJ hopanoid biosyn 39.1 33 0.00071 32.8 3.5 51 149-203 287-341 (472)
243 COG1523 PulA Type II secretory 39.1 52 0.0011 34.3 5.1 53 152-204 206-284 (697)
244 cd00958 DhnA Class I fructose- 38.9 71 0.0015 27.4 5.2 64 136-205 65-129 (235)
245 cd04740 DHOD_1B_like Dihydroor 38.3 1.3E+02 0.0028 26.7 6.9 24 144-167 100-123 (296)
246 PTZ00304 NADH dehydrogenase [u 38.1 39 0.00084 33.5 3.8 63 143-214 122-198 (461)
247 TIGR03217 4OH_2_O_val_ald 4-hy 38.0 84 0.0018 29.4 5.9 43 149-203 90-132 (333)
248 KOG4039|consensus 37.9 88 0.0019 28.5 5.7 73 136-212 99-173 (238)
249 PRK09860 putative alcohol dehy 37.8 1.1E+02 0.0023 28.9 6.5 66 129-207 32-97 (383)
250 PRK09267 flavodoxin FldA; Vali 37.8 75 0.0016 25.8 5.0 75 125-202 43-117 (169)
251 PRK06703 flavodoxin; Provision 37.8 77 0.0017 25.2 4.9 74 126-204 46-119 (151)
252 TIGR03105 gln_synth_III glutam 37.7 1.3E+02 0.0029 29.1 7.4 61 145-210 157-229 (435)
253 PRK02412 aroD 3-dehydroquinate 37.7 46 0.001 29.6 4.0 31 137-167 141-173 (253)
254 PRK08645 bifunctional homocyst 37.6 95 0.0021 31.3 6.6 84 128-224 460-550 (612)
255 PRK13396 3-deoxy-7-phosphohept 37.6 3.6E+02 0.0079 25.9 10.1 75 123-204 93-171 (352)
256 TIGR01753 flav_short flavodoxi 37.4 1.1E+02 0.0025 23.2 5.7 71 127-203 44-115 (140)
257 KOG0471|consensus 37.4 41 0.00089 33.6 3.9 59 147-205 41-108 (545)
258 PF04055 Radical_SAM: Radical 37.3 47 0.001 25.0 3.4 49 149-200 90-142 (166)
259 KOG1643|consensus 37.2 56 0.0012 30.0 4.4 49 153-207 80-128 (247)
260 PRK15108 biotin synthase; Prov 37.0 54 0.0012 30.6 4.4 17 149-165 136-152 (345)
261 TIGR01822 2am3keto_CoA 2-amino 36.9 1.1E+02 0.0024 27.6 6.3 55 142-204 151-206 (393)
262 PRK05628 coproporphyrinogen II 36.6 43 0.00094 31.0 3.7 27 145-171 143-169 (375)
263 PLN03008 Phospholipase D delta 36.6 74 0.0016 34.1 5.8 65 130-203 225-298 (868)
264 TIGR03217 4OH_2_O_val_ald 4-hy 36.3 71 0.0015 29.9 5.1 29 138-166 16-44 (333)
265 PRK14582 pgaB outer membrane N 36.2 84 0.0018 32.6 6.0 59 145-210 333-406 (671)
266 cd06416 GH25_Lys1-like Lys-1 i 36.1 1.7E+02 0.0038 24.5 7.0 70 136-208 56-133 (196)
267 cd06450 DOPA_deC_like DOPA dec 35.5 2.4E+02 0.0053 24.7 8.1 56 142-204 129-184 (345)
268 PLN02376 1-aminocyclopropane-1 35.5 1.2E+02 0.0026 29.6 6.7 59 141-203 179-237 (496)
269 TIGR02026 BchE magnesium-proto 35.4 43 0.00094 32.6 3.7 51 149-202 287-340 (497)
270 TIGR03127 RuMP_HxlB 6-phospho 35.2 2.3E+02 0.005 23.1 7.5 71 127-203 29-104 (179)
271 TIGR02090 LEU1_arch isopropylm 35.0 49 0.0011 31.1 3.8 53 149-203 74-130 (363)
272 PF04273 DUF442: Putative phos 35.0 95 0.0021 24.7 5.0 43 149-200 17-59 (110)
273 PF00282 Pyridoxal_deC: Pyrido 34.8 1E+02 0.0022 28.9 6.0 70 128-204 140-230 (373)
274 COG2876 AroA 3-deoxy-D-arabino 34.5 2E+02 0.0043 27.2 7.6 56 145-204 58-115 (286)
275 TIGR00538 hemN oxygen-independ 34.5 60 0.0013 31.1 4.4 49 149-200 151-202 (455)
276 COG0076 GadB Glutamate decarbo 34.2 1.4E+02 0.003 29.3 7.0 52 142-204 192-243 (460)
277 cd08185 Fe-ADH1 Iron-containin 34.2 1.4E+02 0.0031 27.7 6.8 68 128-207 25-92 (380)
278 PF01380 SIS: SIS domain SIS d 34.2 1.2E+02 0.0027 22.6 5.3 70 129-203 6-85 (131)
279 PLN02284 glutamine synthetase 34.1 1.3E+02 0.0027 28.5 6.4 54 152-210 176-241 (354)
280 PF08821 CGGC: CGGC domain; I 33.9 1.7E+02 0.0036 23.4 6.2 50 145-203 51-104 (107)
281 PRK09432 metF 5,10-methylenete 33.7 93 0.002 28.6 5.4 61 137-210 154-216 (296)
282 PRK07360 FO synthase subunit 2 33.4 44 0.00095 31.4 3.3 50 149-201 163-217 (371)
283 COG3142 CutC Uncharacterized p 33.2 55 0.0012 30.2 3.7 35 133-167 60-94 (241)
284 PRK08883 ribulose-phosphate 3- 33.0 1.4E+02 0.003 26.3 6.2 51 137-204 62-112 (220)
285 PF13727 CoA_binding_3: CoA-bi 32.9 59 0.0013 25.4 3.5 44 148-203 130-173 (175)
286 PLN02428 lipoic acid synthase 32.9 1.1E+02 0.0024 29.3 5.8 56 144-210 229-286 (349)
287 smart00633 Glyco_10 Glycosyl h 32.8 18 0.00039 31.7 0.6 14 169-182 3-16 (254)
288 PRK12581 oxaloacetate decarbox 32.7 1.6E+02 0.0034 29.4 7.1 54 138-203 97-150 (468)
289 KOG1412|consensus 32.6 95 0.0021 30.4 5.3 48 144-200 131-178 (410)
290 PRK12360 4-hydroxy-3-methylbut 32.5 1.4E+02 0.0031 27.7 6.3 63 128-203 31-96 (281)
291 PRK00061 ribH 6,7-dimethyl-8-r 32.5 94 0.002 26.3 4.8 77 126-214 10-87 (154)
292 COG1432 Uncharacterized conser 32.4 49 0.0011 28.2 3.1 32 176-207 112-144 (181)
293 PRK12330 oxaloacetate decarbox 32.3 1E+02 0.0023 30.8 5.8 51 139-201 90-140 (499)
294 cd03334 Fab1_TCP TCP-1 like do 32.2 2E+02 0.0044 25.7 7.2 65 126-207 84-161 (261)
295 PLN02821 1-hydroxy-2-methyl-2- 32.1 79 0.0017 31.6 4.9 68 128-203 136-205 (460)
296 COG3684 LacD Tagatose-1,6-bisp 32.0 45 0.00097 31.5 3.0 71 134-208 100-170 (306)
297 PRK05586 biotin carboxylase; V 32.0 1.7E+02 0.0036 27.8 6.9 58 148-206 14-81 (447)
298 PF06230 DUF1009: Protein of u 31.6 1.3E+02 0.0029 26.9 5.9 50 141-202 163-213 (214)
299 PRK00870 haloalkane dehalogena 31.6 2.1E+02 0.0045 24.8 7.0 66 128-199 46-114 (302)
300 TIGR02193 heptsyl_trn_I lipopo 31.3 1.3E+02 0.0028 26.6 5.7 63 135-201 187-259 (319)
301 PLN02389 biotin synthase 31.2 1.4E+02 0.003 28.5 6.3 61 140-207 113-175 (379)
302 KOG3625|consensus 31.2 58 0.0013 35.9 4.0 50 144-196 140-207 (1521)
303 TIGR02427 protocat_pcaD 3-oxoa 31.1 1.8E+02 0.0039 22.7 6.0 66 128-199 12-78 (251)
304 PRK07432 5'-methylthioadenosin 31.1 65 0.0014 30.0 3.9 40 124-165 42-85 (290)
305 COG1082 IolE Sugar phosphate i 30.7 1.7E+02 0.0037 24.8 6.2 66 145-210 83-155 (274)
306 COG1501 Alpha-glucosidases, fa 30.7 1.8E+02 0.0039 30.6 7.4 80 130-213 262-349 (772)
307 cd03174 DRE_TIM_metallolyase D 30.6 73 0.0016 27.3 3.9 53 149-204 77-134 (265)
308 PLN03244 alpha-amylase; Provis 30.5 36 0.00077 36.4 2.3 45 161-205 399-461 (872)
309 PRK00164 moaA molybdenum cofac 30.5 1.3E+02 0.0028 27.1 5.7 48 145-201 143-190 (331)
310 PRK08931 5'-methylthioadenosin 30.4 75 0.0016 29.6 4.2 39 125-165 43-85 (289)
311 cd08171 GlyDH-like2 Glycerol d 30.4 1.4E+02 0.0029 27.6 5.9 65 128-206 22-86 (345)
312 PRK09248 putative hydrolase; V 30.3 1.7E+02 0.0036 25.4 6.2 16 188-203 175-190 (246)
313 PRK09249 coproporphyrinogen II 30.1 78 0.0017 30.4 4.4 48 149-199 151-201 (453)
314 cd08181 PPD-like 1,3-propanedi 30.0 1.6E+02 0.0034 27.3 6.3 67 128-206 25-91 (357)
315 PF00289 CPSase_L_chain: Carba 29.9 1E+02 0.0022 24.4 4.3 58 148-206 14-81 (110)
316 COG1060 ThiH Thiamine biosynth 29.7 51 0.0011 31.6 3.1 51 145-200 157-214 (370)
317 PRK14042 pyruvate carboxylase 29.6 1.3E+02 0.0028 30.8 6.1 54 138-203 88-141 (596)
318 PRK14905 triosephosphate isome 29.5 1.1E+02 0.0024 29.2 5.2 53 150-208 86-138 (355)
319 cd00537 MTHFR Methylenetetrahy 29.5 1.3E+02 0.0028 26.6 5.5 61 137-210 138-200 (274)
320 cd01025 TOPRIM_recR TOPRIM_rec 29.4 1.6E+02 0.0035 23.8 5.5 62 150-214 10-73 (112)
321 PRK08175 aminotransferase; Val 29.4 90 0.0019 28.6 4.5 53 148-204 150-203 (395)
322 TIGR02712 urea_carbox urea car 29.3 1.2E+02 0.0027 33.3 6.1 56 149-207 14-81 (1201)
323 PRK09240 thiH thiamine biosynt 29.0 1.1E+02 0.0024 28.8 5.1 49 149-200 163-217 (371)
324 PF02811 PHP: PHP domain; Int 29.0 1.7E+02 0.0036 22.9 5.5 45 147-204 17-61 (175)
325 cd00530 PTE Phosphotriesterase 28.9 1.8E+02 0.004 25.3 6.2 54 145-210 31-84 (293)
326 PF01487 DHquinase_I: Type I 3 28.8 63 0.0014 27.7 3.3 64 136-208 118-185 (224)
327 PRK05301 pyrroloquinoline quin 28.8 67 0.0014 29.6 3.6 43 148-201 143-185 (378)
328 smart00729 Elp3 Elongator prot 28.7 1.9E+02 0.0041 22.6 5.8 51 149-202 100-154 (216)
329 COG3623 SgaU Putative L-xylulo 28.7 55 0.0012 30.6 3.0 25 143-167 14-39 (287)
330 PRK13361 molybdenum cofactor b 28.6 1.1E+02 0.0023 28.1 4.8 16 186-201 171-186 (329)
331 PRK07823 5'-methylthioadenosin 28.6 94 0.002 28.5 4.5 41 125-165 44-86 (264)
332 PRK15452 putative protease; Pr 28.6 1E+02 0.0022 30.2 4.9 47 145-200 45-91 (443)
333 TIGR00653 GlnA glutamine synth 28.6 2.8E+02 0.0061 27.2 8.0 61 145-210 182-254 (460)
334 PLN02590 probable tyrosine dec 28.4 1.3E+02 0.0029 30.1 5.8 57 141-204 267-323 (539)
335 PRK05799 coproporphyrinogen II 28.1 80 0.0017 29.2 4.0 18 150-167 100-117 (374)
336 CHL00200 trpA tryptophan synth 28.1 1.5E+02 0.0033 26.9 5.7 42 148-203 108-149 (263)
337 TIGR00587 nfo apurinic endonuc 27.9 1.4E+02 0.003 26.5 5.3 39 169-208 73-112 (274)
338 PLN03033 2-dehydro-3-deoxyphos 27.9 2.8E+02 0.006 26.3 7.4 74 126-203 12-92 (290)
339 cd06831 PLPDE_III_ODC_like_AZI 27.4 3.1E+02 0.0067 26.0 7.9 74 140-213 144-255 (394)
340 PRK01045 ispH 4-hydroxy-3-meth 27.4 2.5E+02 0.0054 26.3 7.1 69 128-209 30-99 (298)
341 TIGR02109 PQQ_syn_pqqE coenzym 27.2 2.1E+02 0.0047 26.0 6.6 51 142-203 36-86 (358)
342 CHL00139 rpl18 ribosomal prote 26.9 1E+02 0.0022 24.7 3.9 40 150-200 69-108 (109)
343 cd01976 Nitrogenase_MoFe_alpha 26.8 3.4E+02 0.0073 26.0 8.0 74 121-203 293-374 (421)
344 cd08560 GDPD_EcGlpQ_like_1 Gly 26.7 1.1E+02 0.0023 29.2 4.6 52 147-204 246-297 (356)
345 cd00003 PNPsynthase Pyridoxine 26.7 1.4E+02 0.0031 27.3 5.2 48 146-211 110-158 (234)
346 TIGR01211 ELP3 histone acetylt 26.7 74 0.0016 31.9 3.7 51 149-202 206-259 (522)
347 cd01017 AdcA Metal binding pro 26.6 1.3E+02 0.0028 26.8 4.9 45 142-202 203-247 (282)
348 PRK09989 hypothetical protein; 26.5 1E+02 0.0022 26.7 4.1 59 146-205 85-144 (258)
349 PRK06294 coproporphyrinogen II 26.5 84 0.0018 29.4 3.9 49 149-200 103-154 (370)
350 cd08186 Fe-ADH8 Iron-containin 26.4 2.3E+02 0.005 26.5 6.8 67 129-207 27-93 (383)
351 cd08190 HOT Hydroxyacid-oxoaci 26.2 2.6E+02 0.0056 26.6 7.1 66 128-206 23-88 (414)
352 TIGR00262 trpA tryptophan synt 26.1 1.8E+02 0.004 26.1 5.8 41 149-203 105-145 (256)
353 PRK05928 hemD uroporphyrinogen 26.0 1.8E+02 0.0039 24.2 5.4 78 126-211 123-219 (249)
354 cd08183 Fe-ADH2 Iron-containin 25.9 2.1E+02 0.0045 26.7 6.3 62 128-206 22-83 (374)
355 PF13489 Methyltransf_23: Meth 25.9 50 0.0011 25.3 1.9 72 128-202 78-159 (161)
356 TIGR02495 NrdG2 anaerobic ribo 25.8 1.2E+02 0.0026 24.8 4.3 51 150-204 103-159 (191)
357 cd08182 HEPD Hydroxyethylphosp 25.8 2.6E+02 0.0056 25.9 6.9 63 129-207 24-86 (367)
358 TIGR01093 aroD 3-dehydroquinat 25.7 98 0.0021 26.9 3.9 32 136-167 123-156 (228)
359 PRK08462 biotin carboxylase; V 25.6 1.8E+02 0.0039 27.4 5.9 55 149-203 17-81 (445)
360 cd07939 DRE_TIM_NifV Streptomy 25.5 1.2E+02 0.0026 26.7 4.5 53 149-203 72-128 (259)
361 PRK13371 4-hydroxy-3-methylbut 25.5 2.1E+02 0.0046 27.9 6.5 68 128-203 68-137 (387)
362 PRK12457 2-dehydro-3-deoxyphos 25.4 4E+02 0.0088 25.1 8.0 77 123-203 8-92 (281)
363 PF13460 NAD_binding_10: NADH( 25.4 3.4E+02 0.0074 21.4 7.5 70 145-214 75-152 (183)
364 PRK02308 uvsE putative UV dama 25.4 1.5E+02 0.0033 27.4 5.2 59 152-211 54-117 (303)
365 TIGR02311 HpaI 2,4-dihydroxyhe 25.3 1.3E+02 0.0027 26.9 4.6 47 149-205 23-69 (249)
366 TIGR02660 nifV_homocitr homoci 25.3 59 0.0013 30.4 2.6 53 149-203 75-131 (365)
367 cd00502 DHQase_I Type I 3-dehy 25.2 98 0.0021 26.6 3.8 32 136-167 118-151 (225)
368 PF00834 Ribul_P_3_epim: Ribul 25.2 2E+02 0.0043 25.1 5.7 39 151-203 72-110 (201)
369 COG0041 PurE Phosphoribosylcar 25.1 2.6E+02 0.0057 24.4 6.3 51 142-203 12-62 (162)
370 PTZ00445 p36-lilke protein; Pr 25.1 1.6E+02 0.0035 26.8 5.2 61 143-203 26-96 (219)
371 PLN02229 alpha-galactosidase 24.9 2.7E+02 0.0058 27.6 7.1 81 131-211 65-156 (427)
372 PLN03036 glutamine synthetase; 24.9 3.9E+02 0.0085 26.3 8.2 61 145-210 229-301 (432)
373 PRK12928 lipoyl synthase; Prov 24.9 1.7E+02 0.0037 26.9 5.5 57 143-210 185-243 (290)
374 cd01019 ZnuA Zinc binding prot 24.8 1.3E+02 0.0028 27.1 4.6 25 141-165 210-234 (286)
375 cd01016 TroA Metal binding pro 24.8 97 0.0021 27.7 3.8 47 143-202 194-240 (276)
376 cd04724 Tryptophan_synthase_al 24.8 1.8E+02 0.004 25.6 5.5 41 149-203 94-134 (242)
377 TIGR02109 PQQ_syn_pqqE coenzym 24.7 1.1E+02 0.0024 27.8 4.3 48 149-207 135-183 (358)
378 PRK09057 coproporphyrinogen II 24.6 92 0.002 29.2 3.8 50 150-202 105-157 (380)
379 COG4130 Predicted sugar epimer 24.6 1.9E+02 0.0041 27.0 5.6 58 139-203 10-67 (272)
380 PRK06438 hypothetical protein; 24.5 1.3E+02 0.0029 28.3 4.8 22 148-169 41-63 (292)
381 PRK10966 exonuclease subunit S 24.5 2.4E+02 0.0053 27.0 6.6 64 130-205 41-108 (407)
382 TIGR00010 hydrolase, TatD fami 24.4 2E+02 0.0043 24.1 5.4 45 148-207 17-61 (252)
383 TIGR01282 nifD nitrogenase mol 24.4 3.8E+02 0.0083 26.1 8.1 73 122-203 329-409 (466)
384 PRK08005 epimerase; Validated 24.3 2.5E+02 0.0055 24.8 6.3 50 137-203 62-111 (210)
385 PF07905 PucR: Purine cataboli 24.2 3.5E+02 0.0077 21.2 8.2 68 125-205 39-106 (123)
386 PRK08745 ribulose-phosphate 3- 24.2 2.5E+02 0.0054 24.9 6.2 50 137-203 66-115 (223)
387 PLN02822 serine palmitoyltrans 24.0 1.6E+02 0.0035 28.6 5.4 54 144-204 224-281 (481)
388 COG1082 IolE Sugar phosphate i 23.8 1.9E+02 0.004 24.6 5.2 18 148-165 17-34 (274)
389 TIGR00510 lipA lipoate synthas 23.8 1.9E+02 0.0042 26.8 5.7 59 142-211 187-247 (302)
390 COG1448 TyrB Aspartate/tyrosin 23.6 45 0.00098 32.7 1.6 56 147-203 313-371 (396)
391 COG1663 LpxK Tetraacyldisaccha 23.6 1.2E+02 0.0025 29.2 4.2 55 126-196 231-285 (336)
392 TIGR00587 nfo apurinic endonuc 23.6 1.8E+02 0.0039 25.8 5.2 58 148-209 13-72 (274)
393 PF01120 Alpha_L_fucos: Alpha- 23.6 2.6E+02 0.0056 26.0 6.5 62 140-204 88-157 (346)
394 PF04476 DUF556: Protein of un 23.3 1.1E+02 0.0023 28.1 3.8 64 132-203 117-185 (235)
395 PRK13596 NADH dehydrogenase I 23.3 98 0.0021 30.4 3.8 63 143-214 101-177 (433)
396 PRK05265 pyridoxine 5'-phospha 23.1 1.7E+02 0.0038 26.8 5.1 48 146-211 113-161 (239)
397 PRK08444 hypothetical protein; 23.1 74 0.0016 30.1 2.8 46 149-201 151-205 (353)
398 TIGR03239 GarL 2-dehydro-3-deo 23.1 1.3E+02 0.0029 26.9 4.4 47 149-205 23-69 (249)
399 PRK08636 aspartate aminotransf 23.0 2.2E+02 0.0048 26.2 5.9 58 142-203 155-213 (403)
400 PRK08207 coproporphyrinogen II 22.9 1.2E+02 0.0025 30.0 4.2 47 149-199 269-319 (488)
401 cd06829 PLPDE_III_CANSDC Type 22.9 2.2E+02 0.0047 26.2 5.8 73 133-213 155-237 (346)
402 PF05226 CHASE2: CHASE2 domain 22.7 1.6E+02 0.0034 26.2 4.7 57 141-204 59-115 (310)
403 PRK02261 methylaspartate mutas 22.6 1E+02 0.0022 25.2 3.2 32 131-165 87-118 (137)
404 COG0535 Predicted Fe-S oxidore 22.6 1.8E+02 0.0039 25.4 5.0 48 149-199 108-159 (347)
405 PF02401 LYTB: LytB protein; 22.5 1.6E+02 0.0035 27.2 4.9 64 128-204 28-92 (281)
406 COG0826 Collagenase and relate 22.4 1.7E+02 0.0037 27.8 5.1 44 156-203 23-67 (347)
407 cd04909 ACT_PDH-BS C-terminal 22.4 1.9E+02 0.0042 19.6 4.2 56 145-201 12-69 (69)
408 cd06840 PLPDE_III_Bif_AspK_Dap 22.4 6.3E+02 0.014 23.5 9.3 80 135-214 145-260 (368)
409 PRK05926 hypothetical protein; 22.4 71 0.0015 30.4 2.6 46 149-201 169-223 (370)
410 PRK08591 acetyl-CoA carboxylas 22.3 2.4E+02 0.0053 26.5 6.1 67 129-203 3-79 (451)
411 PF00465 Fe-ADH: Iron-containi 22.1 1.8E+02 0.0038 26.8 5.0 65 128-206 22-86 (366)
412 TIGR00433 bioB biotin syntheta 22.1 2.7E+02 0.0059 24.4 6.1 13 188-200 123-135 (296)
413 PF01323 DSBA: DSBA-like thior 22.0 1.6E+02 0.0034 23.6 4.2 43 145-194 150-192 (193)
414 PRK10624 L-1,2-propanediol oxi 22.0 2.7E+02 0.0059 26.0 6.3 66 129-207 31-96 (382)
415 cd06810 PLPDE_III_ODC_DapDC_li 21.9 2.1E+02 0.0046 25.9 5.5 77 131-213 162-257 (368)
416 TIGR02666 moaA molybdenum cofa 21.9 2.2E+02 0.0048 25.8 5.6 48 145-201 138-185 (334)
417 cd08178 AAD_C C-terminal alcoh 21.8 2.7E+02 0.0058 26.2 6.3 67 128-207 21-87 (398)
418 PRK09147 succinyldiaminopimela 21.8 2.1E+02 0.0045 26.2 5.4 38 162-203 167-204 (396)
419 PRK09469 glnA glutamine synthe 21.8 4.3E+02 0.0093 26.0 7.8 61 145-210 190-263 (469)
420 cd08187 BDH Butanol dehydrogen 21.7 2.7E+02 0.0058 26.0 6.2 68 128-207 28-95 (382)
421 PRK05692 hydroxymethylglutaryl 21.7 2.2E+02 0.0048 26.0 5.6 51 148-202 122-172 (287)
422 cd06545 GH18_3CO4_chitinase Th 21.7 1.2E+02 0.0026 26.5 3.7 33 175-207 35-68 (253)
423 PF00682 HMGL-like: HMGL-like 21.6 3.4E+02 0.0073 23.1 6.4 52 142-205 63-128 (237)
424 PF13167 GTP-bdg_N: GTP-bindin 21.6 4E+02 0.0087 20.9 6.7 56 145-203 7-62 (95)
425 PF14417 MEDS: MEDS: MEthanoge 21.6 1.3E+02 0.0028 25.3 3.7 76 121-203 80-158 (191)
426 cd08613 GDPD_GDE4_like_1 Glyce 21.5 1E+02 0.0022 29.0 3.4 28 186-214 252-279 (309)
427 TIGR00559 pdxJ pyridoxine 5'-p 21.5 2.1E+02 0.0045 26.3 5.2 18 149-166 134-151 (237)
428 cd06418 GH25_BacA-like BacA is 21.4 1.5E+02 0.0033 26.0 4.3 55 143-200 49-104 (212)
429 PF08732 HIM1: HIM1; InterPro 21.3 59 0.0013 32.0 1.8 15 200-214 291-305 (410)
430 PF05368 NmrA: NmrA-like famil 21.3 4.8E+02 0.01 21.7 7.7 64 145-212 80-149 (233)
431 PRK14041 oxaloacetate decarbox 21.3 2.2E+02 0.0047 28.3 5.7 54 138-203 87-140 (467)
432 PRK12414 putative aminotransfe 21.2 96 0.0021 28.4 3.1 38 162-203 163-200 (384)
433 PRK05593 rplR 50S ribosomal pr 21.2 1.5E+02 0.0033 24.1 3.9 41 149-200 76-116 (117)
434 TIGR01752 flav_long flavodoxin 21.1 2.2E+02 0.0047 23.4 4.9 74 126-203 42-116 (167)
435 TIGR01699 XAPA xanthosine phos 21.1 1.7E+02 0.0037 26.5 4.6 41 124-164 46-87 (248)
436 PF00885 DMRL_synthase: 6,7-di 21.0 2.2E+02 0.0047 23.7 4.9 71 127-212 2-76 (144)
437 cd01292 metallo-dependent_hydr 21.0 2.5E+02 0.0054 22.8 5.2 19 186-204 67-86 (275)
438 cd06543 GH18_PF-ChiA-like PF-C 20.9 2.8E+02 0.0061 25.5 6.1 55 153-210 19-79 (294)
439 PRK08195 4-hyroxy-2-oxovalerat 20.9 1.8E+02 0.0038 27.3 4.9 30 138-167 17-46 (337)
440 COG0859 RfaF ADP-heptose:LPS h 20.7 1.8E+02 0.0039 26.5 4.8 76 129-207 175-262 (334)
441 PRK10558 alpha-dehydro-beta-de 20.7 1.7E+02 0.0036 26.4 4.5 46 150-205 31-76 (256)
442 cd07941 DRE_TIM_LeuA3 Desulfob 20.6 96 0.0021 27.8 2.9 51 150-203 82-137 (273)
443 PRK05927 hypothetical protein; 20.6 77 0.0017 29.9 2.4 50 149-201 147-201 (350)
444 KOG3833|consensus 20.5 1E+02 0.0023 30.3 3.3 53 147-205 444-499 (505)
445 PRK12999 pyruvate carboxylase; 20.4 2.3E+02 0.005 31.2 6.2 53 138-202 619-671 (1146)
446 PF01936 NYN: NYN domain; Int 20.4 87 0.0019 24.0 2.3 26 178-203 99-124 (146)
447 COG0761 lytB 4-Hydroxy-3-methy 20.4 3.3E+02 0.0072 25.9 6.5 65 126-203 29-94 (294)
448 PRK06267 hypothetical protein; 20.4 3.8E+02 0.0081 25.0 6.9 48 143-200 150-197 (350)
449 PF08924 DUF1906: Domain of un 20.4 1.5E+02 0.0033 24.2 3.8 53 143-200 35-92 (136)
450 COG0710 AroD 3-dehydroquinate 20.4 1.3E+02 0.0027 27.3 3.6 34 135-168 120-155 (231)
451 TIGR02156 PA_CoA_Oxy1 phenylac 20.3 1.2E+02 0.0025 28.4 3.5 50 145-198 216-266 (289)
452 PRK08202 purine nucleoside pho 20.3 2.5E+02 0.0055 25.3 5.6 39 125-163 69-108 (272)
453 cd08551 Fe-ADH iron-containing 20.3 3.5E+02 0.0075 25.0 6.6 67 128-207 23-89 (370)
454 cd04739 DHOD_like Dihydroorota 20.3 3.4E+02 0.0074 25.0 6.5 64 144-209 110-174 (325)
455 PRK05692 hydroxymethylglutaryl 20.2 1.2E+02 0.0027 27.6 3.6 55 149-203 82-138 (287)
456 PRK13964 coaD phosphopantethei 20.2 3E+02 0.0066 22.8 5.6 14 191-204 75-88 (140)
457 cd06842 PLPDE_III_Y4yA_like Ty 20.2 4.2E+02 0.0091 25.2 7.3 21 194-214 289-309 (423)
458 TIGR00619 sbcd exonuclease Sbc 20.2 3E+02 0.0065 24.3 5.9 68 129-207 40-111 (253)
459 PRK13778 paaA phenylacetate-Co 20.1 1.1E+02 0.0025 28.9 3.4 49 146-198 235-284 (314)
460 KOG2949|consensus 20.1 4.1E+02 0.0089 25.1 6.8 79 121-220 98-176 (306)
461 cd08194 Fe-ADH6 Iron-containin 20.0 3.6E+02 0.0078 25.1 6.7 68 127-207 22-89 (375)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=2.4e-41 Score=338.68 Aligned_cols=112 Identities=31% Similarity=0.606 Sum_probs=107.8
Q ss_pred ceeEEEecCCeEEECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHH
Q psy13824 113 QTFTVNYSANTFRMDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMR 192 (226)
Q Consensus 113 r~~~v~~~~~~F~ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~ 192 (226)
...+|++|+++|+|||+|++|++|++||||+||++|+|+|+||||+|+|||+||||||+|||+||+|||+|++||++||+
T Consensus 26 ~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~ 105 (840)
T PLN03059 26 GSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIK 105 (840)
T ss_pred ceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEEeeccccccccCCCCcccccccc
Q psy13824 193 LAAEEGLYVLLYSGFSWTMKSSWDGTCIGFLWT 225 (226)
Q Consensus 193 lA~e~GL~VILRpGPYIcaesT~~g~~PaWL~~ 225 (226)
+|+|+||+||||||||||||.+.+|. |+||.+
T Consensus 106 la~e~GLyvilRpGPYIcAEw~~GGl-P~WL~~ 137 (840)
T PLN03059 106 VVQAAGLYVHLRIGPYICAEWNFGGF-PVWLKY 137 (840)
T ss_pred HHHHcCCEEEecCCcceeeeecCCCC-chhhhc
Confidence 99999999999999999999998887 999964
No 2
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=2.5e-41 Score=306.28 Aligned_cols=103 Identities=48% Similarity=0.890 Sum_probs=84.5
Q ss_pred eEEECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEE
Q psy13824 123 TFRMDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 123 ~F~ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VI 202 (226)
+|+|||||++|++||+||+|+|+++|+|+|+||||+|+|||++||+||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCCccccccccC
Q psy13824 203 LYSGFSWTMKSSWDGTCIGFLWTK 226 (226)
Q Consensus 203 LRpGPYIcaesT~~g~~PaWL~~~ 226 (226)
||||||||||++++|. |+||.++
T Consensus 81 lrpGpyi~aE~~~gG~-P~Wl~~~ 103 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGL-PAWLLRK 103 (319)
T ss_dssp EEEES---TTBGGGG---GGGGGS
T ss_pred ecccceecccccchhh-hhhhhcc
Confidence 9999999999998877 9999764
No 3
>KOG0496|consensus
Probab=100.00 E-value=4.4e-36 Score=293.44 Aligned_cols=111 Identities=36% Similarity=0.719 Sum_probs=107.3
Q ss_pred eeEEEecCCeEEECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHH
Q psy13824 114 TFTVNYSANTFRMDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRL 193 (226)
Q Consensus 114 ~~~v~~~~~~F~ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~l 193 (226)
.+.|+||+++|++||+|+++++|+|||+|++|++|+|+++|+|++|+|+|+||||||.|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 66899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEEeeccccccccCCCCcccccccc
Q psy13824 194 AAEEGLYVLLYSGFSWTMKSSWDGTCIGFLWT 225 (226)
Q Consensus 194 A~e~GL~VILRpGPYIcaesT~~g~~PaWL~~ 225 (226)
|++.||+|+||+|||||||.+.+|.| -||..
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P-~wL~~ 127 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLP-WWLRN 127 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcc-hhhhh
Confidence 99999999999999999999999985 77753
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.2e-25 Score=222.20 Aligned_cols=99 Identities=35% Similarity=0.646 Sum_probs=92.6
Q ss_pred EecCCeEEECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEE-eeecCcccCCCCeeeeeCcccHHHHHHHHHH
Q psy13824 118 NYSANTFRMDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVST-YVGWSSHEAQPGTYSFDGHRDVEYFMRLAAE 196 (226)
Q Consensus 118 ~~~~~~F~ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~t-yV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e 196 (226)
.+++.++++||++++++||++||+|||+++|.|||++||++|+|+|++ |+.|++|||++|+|||+ .+|.+ |+++|++
T Consensus 2 ~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~~ 79 (673)
T COG1874 2 SYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAYK 79 (673)
T ss_pred cccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHHh
Confidence 356889999999999999999999999999999999999999999999 78899999999999999 67777 7999999
Q ss_pred cCCeEEEeeccccccccCCCCccccccccC
Q psy13824 197 EGLYVLLYSGFSWTMKSSWDGTCIGFLWTK 226 (226)
Q Consensus 197 ~GL~VILRpGPYIcaesT~~g~~PaWL~~~ 226 (226)
.||+||||||| ++++|+||+++
T Consensus 80 ~Gl~vil~t~P--------~g~~P~Wl~~~ 101 (673)
T COG1874 80 AGLYVILRTGP--------TGAPPAWLAKK 101 (673)
T ss_pred cCceEEEecCC--------CCCCchHHhcC
Confidence 99999999999 67889999875
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.68 E-value=1.4e-17 Score=151.90 Aligned_cols=78 Identities=31% Similarity=0.518 Sum_probs=61.8
Q ss_pred cccCCCCCHhHHHHHHHHHHHcCCCEEEEe-eecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccccccccCC
Q psy13824 137 EFHYFRSPQERWREILRKIRSAGLNAVSTY-VGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSW 215 (226)
Q Consensus 137 eiHYfRvP~e~W~drL~kmKaaGlNTV~ty-V~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIcaesT~ 215 (226)
+++++++|++.|++++++||++|+|+|++. +.|+.+||+||+|||+ .||++|++|+++||+|||+ ++
T Consensus 1 dy~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~---------~~ 68 (374)
T PF02449_consen 1 DYYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILG---------TP 68 (374)
T ss_dssp E--GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEE---------EC
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEE---------ec
Confidence 467889999999999999999999999975 5799999999999999 9999999999999999994 66
Q ss_pred CCccccccccC
Q psy13824 216 DGTCIGFLWTK 226 (226)
Q Consensus 216 ~g~~PaWL~~~ 226 (226)
++++|+||.++
T Consensus 69 ~~~~P~Wl~~~ 79 (374)
T PF02449_consen 69 TAAPPAWLYDK 79 (374)
T ss_dssp TTTS-HHHHCC
T ss_pred ccccccchhhh
Confidence 88999999753
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.90 E-value=6.6e-09 Score=91.98 Aligned_cols=73 Identities=25% Similarity=0.336 Sum_probs=56.3
Q ss_pred EEecCCeEEECCeeeEEeeccccCC------CCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHH
Q psy13824 117 VNYSANTFRMDGRPFRFVSGEFHYF------RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYF 190 (226)
Q Consensus 117 v~~~~~~F~ldGkpf~ilgGeiHYf------RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~F 190 (226)
|.++++.|.|||||+.+-|...|.. ..|++.++.++++||++|+|+||+ .|-|.+ .+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~~-----------~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPPS-----------PRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS--S-----------HHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccCc-----------HHH
Confidence 4567999999999999999998874 257899999999999999999999 677755 689
Q ss_pred HHHHHHcCCeEEEee
Q psy13824 191 MRLAAEEGLYVLLYS 205 (226)
Q Consensus 191 I~lA~e~GL~VILRp 205 (226)
+++|.+.||.|+--+
T Consensus 65 ~~~cD~~GilV~~e~ 79 (298)
T PF02836_consen 65 YDLCDELGILVWQEI 79 (298)
T ss_dssp HHHHHHHT-EEEEE-
T ss_pred HHHHhhcCCEEEEec
Confidence 999999999998654
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.62 E-value=1.8e-07 Score=91.02 Aligned_cols=73 Identities=23% Similarity=0.232 Sum_probs=62.6
Q ss_pred EEEecCCeEEECCeeeEEeeccccCC------CCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHH
Q psy13824 116 TVNYSANTFRMDGRPFRFVSGEFHYF------RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEY 189 (226)
Q Consensus 116 ~v~~~~~~F~ldGkpf~ilgGeiHYf------RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~ 189 (226)
+|+.++..|+|||+|+++-|...|.. ..+++.|+.+++.||++|+|+||+ .|-|.+ ++
T Consensus 277 ~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~~-----------~~ 340 (604)
T PRK10150 277 SVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPYS-----------EE 340 (604)
T ss_pred EEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCCC-----------HH
Confidence 45567889999999999999988864 256888999999999999999999 466644 68
Q ss_pred HHHHHHHcCCeEEEe
Q psy13824 190 FMRLAAEEGLYVLLY 204 (226)
Q Consensus 190 FI~lA~e~GL~VILR 204 (226)
|+++|.+.||.|+--
T Consensus 341 ~~~~cD~~GllV~~E 355 (604)
T PRK10150 341 MLDLADRHGIVVIDE 355 (604)
T ss_pred HHHHHHhcCcEEEEe
Confidence 999999999999864
No 8
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.60 E-value=8e-08 Score=81.44 Aligned_cols=80 Identities=21% Similarity=0.412 Sum_probs=64.1
Q ss_pred ECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCccc-CCCCe-eeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 126 MDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHE-AQPGT-YSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 126 ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHE-Pe~G~-FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
.+|+++.+.|-+.|... ...-+++++.||++|+|+||+.+.|...+ |.++. ++=+.-..|+++|+.|+++||+|||
T Consensus 3 ~~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vil 80 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVIL 80 (281)
T ss_dssp TTSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEE
Confidence 47999999999999421 12779999999999999999999995554 67764 6555556999999999999999998
Q ss_pred eecc
Q psy13824 204 YSGF 207 (226)
Q Consensus 204 RpGP 207 (226)
.+-.
T Consensus 81 d~h~ 84 (281)
T PF00150_consen 81 DLHN 84 (281)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 6443
No 9
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.44 E-value=1e-06 Score=91.62 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=62.1
Q ss_pred EEEecCCeEEECCeeeEEeeccccCC------CCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHH
Q psy13824 116 TVNYSANTFRMDGRPFRFVSGEFHYF------RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEY 189 (226)
Q Consensus 116 ~v~~~~~~F~ldGkpf~ilgGeiHYf------RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~ 189 (226)
+|..++..|+|||+|+++-|...|.. .++++.++.+++.||++|+|+||+ .|-|.. .+
T Consensus 319 ~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~~-----------~~ 382 (1021)
T PRK10340 319 DIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPND-----------PR 382 (1021)
T ss_pred EEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCCC-----------HH
Confidence 34456889999999999999998853 246899999999999999999999 365554 58
Q ss_pred HHHHHHHcCCeEEEe
Q psy13824 190 FMRLAAEEGLYVLLY 204 (226)
Q Consensus 190 FI~lA~e~GL~VILR 204 (226)
|.++|.|.||+|+--
T Consensus 383 fydlcDe~GllV~dE 397 (1021)
T PRK10340 383 FYELCDIYGLFVMAE 397 (1021)
T ss_pred HHHHHHHCCCEEEEC
Confidence 999999999999875
No 10
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.42 E-value=1.2e-06 Score=91.36 Aligned_cols=74 Identities=20% Similarity=0.294 Sum_probs=63.1
Q ss_pred EEEecCCeEEECCeeeEEeeccccCC------CCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHH
Q psy13824 116 TVNYSANTFRMDGRPFRFVSGEFHYF------RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEY 189 (226)
Q Consensus 116 ~v~~~~~~F~ldGkpf~ilgGeiHYf------RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~ 189 (226)
+|..++..|+|||+|+++-|...|.. +++++.++++++.||++|+|+||+ .|-|.. .+
T Consensus 335 ~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~~-----------p~ 398 (1027)
T PRK09525 335 KVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPNH-----------PL 398 (1027)
T ss_pred EEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCCC-----------HH
Confidence 44556889999999999999998852 467999999999999999999999 465543 57
Q ss_pred HHHHHHHcCCeEEEee
Q psy13824 190 FMRLAAEEGLYVLLYS 205 (226)
Q Consensus 190 FI~lA~e~GL~VILRp 205 (226)
|.++|.|.||+|+--.
T Consensus 399 fydlcDe~GilV~dE~ 414 (1027)
T PRK09525 399 WYELCDRYGLYVVDEA 414 (1027)
T ss_pred HHHHHHHcCCEEEEec
Confidence 9999999999999763
No 11
>TIGR03356 BGL beta-galactosidase.
Probab=98.25 E-value=8.4e-07 Score=84.02 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCcccCC-CCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGWSSHEAQ-PGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~WnlHEPe-~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
..|++|++.||++|+|++|..|.|+..+|+ +|++|.+|-...+++|+.+.++||.+|+-
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivt 113 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVT 113 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEe
Confidence 789999999999999999999999999999 79999888889999999999999998873
No 12
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.19 E-value=7.4e-06 Score=83.95 Aligned_cols=73 Identities=25% Similarity=0.299 Sum_probs=62.3
Q ss_pred EEEecCCeEEECCeeeEEeeccccCCC-----C-CHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHH
Q psy13824 116 TVNYSANTFRMDGRPFRFVSGEFHYFR-----S-PQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEY 189 (226)
Q Consensus 116 ~v~~~~~~F~ldGkpf~ilgGeiHYfR-----v-P~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~ 189 (226)
+|.++...|.|||||+++-|..-|.+. . ..+..+++|+.||++|+|+|||. |-|+. +.
T Consensus 285 ~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-----------~~ 348 (808)
T COG3250 285 TVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPNS-----------EE 348 (808)
T ss_pred EEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-----------HH
Confidence 445567799999999999999999863 2 35559999999999999999993 77776 78
Q ss_pred HHHHHHHcCCeEEEe
Q psy13824 190 FMRLAAEEGLYVLLY 204 (226)
Q Consensus 190 FI~lA~e~GL~VILR 204 (226)
|.++|.+.||.||--
T Consensus 349 ~ydLcDelGllV~~E 363 (808)
T COG3250 349 FYDLCDELGLLVIDE 363 (808)
T ss_pred HHHHHHHhCcEEEEe
Confidence 999999999999974
No 13
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.86 E-value=6.7e-05 Score=69.88 Aligned_cols=80 Identities=19% Similarity=0.317 Sum_probs=52.7
Q ss_pred EEEecCCeEE--ECCeeeEEeeccccCCCC-----------CHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeee
Q psy13824 116 TVNYSANTFR--MDGRPFRFVSGEFHYFRS-----------PQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFD 182 (226)
Q Consensus 116 ~v~~~~~~F~--ldGkpf~ilgGeiHYfRv-----------P~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFs 182 (226)
.|+..|+.|. .+|++|+|.|-.+.+-.. .++.|+.|+..||++|+||||+|- ..|.
T Consensus 10 pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~----vdp~------- 78 (314)
T PF03198_consen 10 PIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS----VDPS------- 78 (314)
T ss_dssp -EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TT-------
T ss_pred CEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE----eCCC-------
Confidence 4556688888 899999999988877433 378899999999999999999972 2333
Q ss_pred CcccHHHHHHHHHHcCCeEEEeeccc
Q psy13824 183 GHRDVEYFMRLAAEEGLYVLLYSGFS 208 (226)
Q Consensus 183 G~~DLd~FI~lA~e~GL~VILRpGPY 208 (226)
.|-|+.+++.++.|||||+--+..
T Consensus 79 --~nHd~CM~~~~~aGIYvi~Dl~~p 102 (314)
T PF03198_consen 79 --KNHDECMSAFADAGIYVILDLNTP 102 (314)
T ss_dssp --S--HHHHHHHHHTT-EEEEES-BT
T ss_pred --CCHHHHHHHHHhCCCEEEEecCCC
Confidence 378999999999999999987766
No 14
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.77 E-value=2.4e-05 Score=74.92 Aligned_cols=76 Identities=20% Similarity=0.365 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecCcccCC-CCeeeeeCcccHHHHHHHHHHcCCeEEEeeccccccccCC--CC-ccccc
Q psy13824 147 RWREILRKIRSAGLNAVSTYVGWSSHEAQ-PGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSW--DG-TCIGF 222 (226)
Q Consensus 147 ~W~drL~kmKaaGlNTV~tyV~WnlHEPe-~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIcaesT~--~g-~~PaW 222 (226)
..+..|+++|++|+.-|.+.|-|...|.+ |++|||+ -.+++.+++++.||++..-.-=--|+-.-. -. ..|.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs---~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWS---GYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---H---HHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcH---HHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 67889999999999999999999999997 9999999 678999999999999655333333432111 12 45999
Q ss_pred ccc
Q psy13824 223 LWT 225 (226)
Q Consensus 223 L~~ 225 (226)
+++
T Consensus 94 v~~ 96 (402)
T PF01373_consen 94 VWE 96 (402)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 15
>PLN02801 beta-amylase
Probab=97.62 E-value=0.00013 Score=71.78 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=61.3
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeeecCcccC-CCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccccccccCCC--C-cc
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYVGWSSHEA-QPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSWD--G-TC 219 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV~WnlHEP-e~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIcaesT~~--g-~~ 219 (226)
.++..+..|+++|++|+.-|.+.|-|...|. .|++|||+ -..++.+++++.||++..-.-=.-||..--+ . ..
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpL 111 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWS---AYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPI 111 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccC
Confidence 4677899999999999999999999999998 69999999 6678999999999995433222334322111 1 36
Q ss_pred cccccc
Q psy13824 220 IGFLWT 225 (226)
Q Consensus 220 PaWL~~ 225 (226)
|.|+.+
T Consensus 112 P~WV~~ 117 (517)
T PLN02801 112 PQWVRD 117 (517)
T ss_pred CHHHHH
Confidence 999874
No 16
>PLN02803 beta-amylase
Probab=97.62 E-value=0.00013 Score=72.16 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=61.4
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeeecCcccC-CCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccccccccCCC--C-cc
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYVGWSSHEA-QPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSWD--G-TC 219 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV~WnlHEP-e~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIcaesT~~--g-~~ 219 (226)
.++..+..|+++|.+|+.-|.+.|-|...|. .|++|||+ -..++.+++++.||++..-.-=--||..--+ . ..
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpL 181 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWE---GYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPL 181 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccC
Confidence 3677899999999999999999999999998 59999999 5678999999999995443323334321111 1 47
Q ss_pred cccccc
Q psy13824 220 IGFLWT 225 (226)
Q Consensus 220 PaWL~~ 225 (226)
|.|+.+
T Consensus 182 P~WV~e 187 (548)
T PLN02803 182 PPWVLE 187 (548)
T ss_pred CHHHHH
Confidence 999864
No 17
>PLN00197 beta-amylase; Provisional
Probab=97.60 E-value=0.00014 Score=72.17 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=61.9
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeeecCcccC-CCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccccccccCCCC---cc
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYVGWSSHEA-QPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSWDG---TC 219 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV~WnlHEP-e~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIcaesT~~g---~~ 219 (226)
.++..+..|+++|.+|+.-|.+.|-|...|. .|++|||+ -..++.+++++.||++..-.-=.-||..--+. ..
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWs---gY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpL 201 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWG---GYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPL 201 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccC
Confidence 4678999999999999999999999999998 89999999 56789999999999954432233344221111 47
Q ss_pred cccccc
Q psy13824 220 IGFLWT 225 (226)
Q Consensus 220 PaWL~~ 225 (226)
|.|+.+
T Consensus 202 P~WV~~ 207 (573)
T PLN00197 202 PKWVVE 207 (573)
T ss_pred CHHHHH
Confidence 999864
No 18
>PLN02161 beta-amylase
Probab=97.60 E-value=0.00015 Score=71.35 Aligned_cols=78 Identities=21% Similarity=0.292 Sum_probs=61.2
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccC-CCCeeeeeCcccHHHHHHHHHHcCCeEEEeecccccccc--CCCC-ccc
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEA-QPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKS--SWDG-TCI 220 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEP-e~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIcaes--T~~g-~~P 220 (226)
++..+..|+++|.+|+.-|.+.|-|...|. .|++|||+ -..++.+++++.||++..-.-=--|+.. ...+ ..|
T Consensus 116 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~IpLP 192 (531)
T PLN02161 116 LKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWS---LYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGISLP 192 (531)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCccCC
Confidence 677899999999999999999999999998 89999999 6678999999999995443223333321 1111 479
Q ss_pred ccccc
Q psy13824 221 GFLWT 225 (226)
Q Consensus 221 aWL~~ 225 (226)
.|+.+
T Consensus 193 ~WV~~ 197 (531)
T PLN02161 193 LWIRE 197 (531)
T ss_pred HHHHh
Confidence 99874
No 19
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.52 E-value=0.00017 Score=65.11 Aligned_cols=83 Identities=25% Similarity=0.512 Sum_probs=50.9
Q ss_pred CCeEE-ECCeeeEEeeccccC-C-CCCHhHHHHHHHHHHHcCCCEEEEeee--cCcc-c-------C----CCCeeeeeC
Q psy13824 121 ANTFR-MDGRPFRFVSGEFHY-F-RSPQERWREILRKIRSAGLNAVSTYVG--WSSH-E-------A----QPGTYSFDG 183 (226)
Q Consensus 121 ~~~F~-ldGkpf~ilgGeiHY-f-RvP~e~W~drL~kmKaaGlNTV~tyV~--WnlH-E-------P----e~G~FDFsG 183 (226)
++.|. -||+||+.+|-...- + +...+.|+.-|+..|+-|||+|++-++ |... . | .++++||+.
T Consensus 2 ~r~f~~~dG~Pff~lgdT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~ 81 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLGDTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTR 81 (289)
T ss_dssp SSSEEETTS-B--EEEEE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT
T ss_pred CceEecCCCCEEeehhHHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCC
Confidence 45666 899999999944332 3 567899999999999999999999975 5432 1 1 122377775
Q ss_pred c-----ccHHHHHHHHHHcCCeEEE
Q psy13824 184 H-----RDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 184 ~-----~DLd~FI~lA~e~GL~VIL 203 (226)
. ..+|+.|+.|.+.||.+.|
T Consensus 82 ~N~~YF~~~d~~i~~a~~~Gi~~~l 106 (289)
T PF13204_consen 82 PNPAYFDHLDRRIEKANELGIEAAL 106 (289)
T ss_dssp ----HHHHHHHHHHHHHHTT-EEEE
T ss_pred CCHHHHHHHHHHHHHHHHCCCeEEE
Confidence 3 5799999999999999644
No 20
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.52 E-value=5.1e-05 Score=72.14 Aligned_cols=58 Identities=19% Similarity=0.313 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCcccCC--CCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGWSSHEAQ--PGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~WnlHEPe--~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
..|++|++.||++|+|+.|..+.|+..+|. +|++|-.|-...+.+|+.+.++||..++
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~v 117 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIV 117 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEE
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceee
Confidence 789999999999999999999999999999 6999999888899999999999999766
No 21
>PLN02705 beta-amylase
Probab=97.50 E-value=0.00021 Score=71.83 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=61.4
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeeecCcccC-CCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccccccccCCCC---cc
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYVGWSSHEA-QPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSWDG---TC 219 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV~WnlHEP-e~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIcaesT~~g---~~ 219 (226)
.++..+..|+++|++|+.-|.+.|-|...|. .|++|||+ -..++.+++++.||++..-.-=--||..--+. ..
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWs---gY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 342 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWS---GYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISL 342 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccC
Confidence 3688999999999999999999999999998 79999999 56789999999999954322223343211111 47
Q ss_pred cccccc
Q psy13824 220 IGFLWT 225 (226)
Q Consensus 220 PaWL~~ 225 (226)
|.|+.+
T Consensus 343 P~WV~e 348 (681)
T PLN02705 343 PQWVLE 348 (681)
T ss_pred CHHHHH
Confidence 999874
No 22
>PLN02905 beta-amylase
Probab=97.49 E-value=0.00023 Score=71.70 Aligned_cols=78 Identities=17% Similarity=0.225 Sum_probs=61.2
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccC-CCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccccccccCCCC---ccc
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEA-QPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSWDG---TCI 220 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEP-e~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIcaesT~~g---~~P 220 (226)
++..+..|+++|.+|+.-|.+.|-|...|. .|++|||+ -..++.+++++.||++..-.-=.-||..--+. ..|
T Consensus 285 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWs---gY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP 361 (702)
T PLN02905 285 PDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWN---GYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIPLP 361 (702)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 567899999999999999999999999998 89999999 56789999999999954433233344221111 479
Q ss_pred ccccc
Q psy13824 221 GFLWT 225 (226)
Q Consensus 221 aWL~~ 225 (226)
.|+.+
T Consensus 362 ~WV~e 366 (702)
T PLN02905 362 HWVAE 366 (702)
T ss_pred HHHHH
Confidence 99864
No 23
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=97.35 E-value=0.00018 Score=69.64 Aligned_cols=58 Identities=9% Similarity=0.190 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCcccCC--CCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGWSSHEAQ--PGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~WnlHEPe--~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
..|++|++.||++|+|+-|..|.|+..+|. +|++|-.|-.-.+++|+.+.++||..++
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~v 128 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVI 128 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 678999999999999999999999999997 5678888888889999999999999777
No 24
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=97.32 E-value=0.00021 Score=69.16 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCcccCC--CCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGWSSHEAQ--PGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~WnlHEPe--~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
..+++|++.||++|+|+.|..+.|+..+|+ +|++|=+|-.-.+.+|+.+.++||.+++
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~V 130 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLV 130 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 678999999999999999999999999997 5567777777889999999999999776
No 25
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=97.28 E-value=0.0008 Score=56.79 Aligned_cols=62 Identities=19% Similarity=0.421 Sum_probs=47.0
Q ss_pred CCCCHhHHHHHHHHHHHcCCCEEEEeeecCccc-----CC---CCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 141 FRSPQERWREILRKIRSAGLNAVSTYVGWSSHE-----AQ---PGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 141 fRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHE-----Pe---~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
-.++++.|+++++.||+.|+|||-+- |...+ |. ++.|.-.....|+.+++.|++.||+|.+.
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~G 84 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVG 84 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEe
Confidence 48999999999999999999999643 32222 11 22333344568999999999999999984
No 26
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=97.24 E-value=0.00035 Score=67.27 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCcccCC-CCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGWSSHEAQ-PGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~WnlHEPe-~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
..+++|++.||++|+|+-|..|.|+..+|. .|.+|-.|-.--+++|+.+.++||.-++
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~V 112 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFV 112 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 678999999999999999999999999997 5778888888899999999999999665
No 27
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=97.22 E-value=0.00041 Score=66.90 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCcccCC-CCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGWSSHEAQ-PGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~WnlHEPe-~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
..+++|++.||++|+|+-|+.|.|+..+|. +|.+|=.|-.--+++|+.+.++||..++
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~V 111 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFV 111 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 778999999999999999999999999996 5778878888889999999999999766
No 28
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=97.17 E-value=0.00043 Score=66.95 Aligned_cols=58 Identities=12% Similarity=0.174 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCcccCC--CCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGWSSHEAQ--PGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~WnlHEPe--~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
..|++|++.||++|+|+-|..|.|+..+|. +|++|=.|-.--+++|+.+.++||..++
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~V 132 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLV 132 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 779999999999999999999999999997 6677878888889999999999999665
No 29
>PLN02814 beta-glucosidase
Probab=97.16 E-value=0.00035 Score=68.16 Aligned_cols=58 Identities=14% Similarity=0.255 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCcccCC-CCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGWSSHEAQ-PGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~WnlHEPe-~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
..|++|++.||++|+|+-|..|.|+..+|+ +|.+|-.|-.--+.+|+.+.++||..++
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~V 135 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHV 135 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEE
Confidence 779999999999999999999999999996 6888888888999999999999999665
No 30
>PLN02998 beta-glucosidase
Probab=97.12 E-value=0.00037 Score=67.90 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=53.9
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCC-CCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQ-PGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe-~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
-..|++|++.||++|+|+-|..|.|+..+|+ .|.+|-.|-.--+++|+.+.++||..++
T Consensus 81 Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~V 140 (497)
T PLN02998 81 YHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHV 140 (497)
T ss_pred HHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEE
Confidence 3779999999999999999999999999996 5778888888899999999999999665
No 31
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=97.06 E-value=0.00056 Score=66.16 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCcccCC--CCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGWSSHEAQ--PGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~WnlHEPe--~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
..+++|++.||++|+|+-|..|.|+..+|. +|++|=.|-.--+++|+.+.++||.-++
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~V 126 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVV 126 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 779999999999999999999999999997 5667878878889999999999999665
No 32
>PLN02849 beta-glucosidase
Probab=96.92 E-value=0.00079 Score=65.75 Aligned_cols=59 Identities=17% Similarity=0.316 Sum_probs=53.4
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCC-CeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQP-GTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~-G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
-..+++|++.||++|+|+-|..|.|+..+|.. |.+|=.|-.--+++|+.+.++||.-++
T Consensus 78 YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~V 137 (503)
T PLN02849 78 YHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHV 137 (503)
T ss_pred HHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEE
Confidence 37799999999999999999999999999963 778888888889999999999999665
No 33
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.36 E-value=0.0061 Score=57.51 Aligned_cols=59 Identities=31% Similarity=0.562 Sum_probs=45.7
Q ss_pred HhHH-----HHHHHHHHHcCCCEEEEeee-cCcccCC----CCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 145 QERW-----REILRKIRSAGLNAVSTYVG-WSSHEAQ----PGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 145 ~e~W-----~drL~kmKaaGlNTV~tyV~-WnlHEPe----~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
...| ++++..||.+|||+||+++. |.+ ++. |...+=.-...|+++|+-|++.||+|++-
T Consensus 67 ~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD 135 (407)
T COG2730 67 ESHWGNFITEEDFDQIKSAGFNAVRIPIGYWAL-QATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLID 135 (407)
T ss_pred hhccchhhhhhHHHHHHHcCCcEEEcccchhhh-hccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEE
Confidence 5567 99999999999999999998 654 654 32221121127899999999999999997
No 34
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.32 E-value=0.0048 Score=60.31 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=52.7
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCe--eeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGT--YSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~--FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
-..+++|++.||+||+|+.|+.|.|+..-|..+. .+=.|-.-.+++++.+.++||.-++
T Consensus 58 YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~v 118 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFV 118 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4678999999999999999999999999996655 7777778889999999999999665
No 35
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.19 E-value=0.0031 Score=57.69 Aligned_cols=80 Identities=18% Similarity=0.358 Sum_probs=57.5
Q ss_pred EeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEe--eecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccccc
Q psy13824 133 FVSGEFHYFRSPQERWREILRKIRSAGLNAVSTY--VGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWT 210 (226)
Q Consensus 133 ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~ty--V~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIc 210 (226)
.+|..++..+...+. ..+.+-...+|.++.. .-|+..||++|+|||+ ..|++++-|+++|+.|--- +
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH--~--- 79 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGH--T--- 79 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEE--E---
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeee--e---
Confidence 688888887666432 5566666889999987 3499999999999999 9999999999999997411 0
Q ss_pred cccCCCCcccccccc
Q psy13824 211 MKSSWDGTCIGFLWT 225 (226)
Q Consensus 211 aesT~~g~~PaWL~~ 225 (226)
--|....|.|+.+
T Consensus 80 --LvW~~~~P~w~~~ 92 (320)
T PF00331_consen 80 --LVWHSQTPDWVFN 92 (320)
T ss_dssp --EEESSSS-HHHHT
T ss_pred --EEEcccccceeee
Confidence 0233356888864
No 36
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=95.46 E-value=0.024 Score=53.17 Aligned_cols=55 Identities=25% Similarity=0.407 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccCCC-CeeeeeCcccHHHHHHHHHHcCCeEEEeeccccc
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEAQP-GTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWT 210 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEPe~-G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIc 210 (226)
+|.++-||+.|+|+||.-| |+ .|.. |..|.+ +..+..+.|++.||+|+|-+- |--
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YSD 82 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YSD 82 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SSS
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-ccC
Confidence 6899999999999999988 54 5555 766666 777778888899999999876 544
No 37
>smart00642 Aamy Alpha-amylase domain.
Probab=95.35 E-value=0.049 Score=45.69 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=43.8
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccC-------CCCee-----eeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEA-------QPGTY-----SFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEP-------e~G~F-----DFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
-+-+.+.|..+|++|+|+|.+.=++...+. .+..| .|....+++++++.|+++||+||+-
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD 89 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILD 89 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 456778888899999999988744433321 11111 3455679999999999999999985
No 38
>PRK09936 hypothetical protein; Provisional
Probab=94.95 E-value=0.08 Score=49.38 Aligned_cols=56 Identities=16% Similarity=0.430 Sum_probs=47.0
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCc-ccHHHHHHHHHHcCCeEEE
Q psy13824 142 RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGH-RDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 142 RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~-~DLd~FI~lA~e~GL~VIL 203 (226)
+++++.|++.++.+++.|++|+-+ -|...-- =||.|. -+|.+.++.|++.||.|++
T Consensus 34 ~~~~~qWq~~~~~~~~~G~~tLiv--QWt~yG~----~~fg~~~g~La~~l~~A~~~Gl~v~v 90 (296)
T PRK09936 34 QVTDTQWQGLWSQLRLQGFDTLVV--QWTRYGD----ADFGGQRGWLAKRLAAAQQAGLKLVV 90 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEE--EeeeccC----CCcccchHHHHHHHHHHHHcCCEEEE
Confidence 789999999999999999999854 4655511 188875 5899999999999999988
No 39
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=94.37 E-value=0.059 Score=50.92 Aligned_cols=71 Identities=17% Similarity=0.116 Sum_probs=49.1
Q ss_pred eeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccccc
Q psy13824 134 VSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWT 210 (226)
Q Consensus 134 lgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIc 210 (226)
+|=++++...+.+...+-|++|+++|+..|-| ++|.|+...=+.. ..+..+++.|+++|+.|++-..|=+-
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~~--~~~~~l~~~a~~~~~~v~~Disp~~l 72 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDYL--ERLKELLKLAKELGMEVIADISPKVL 72 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------HH--HHHHHHHHHHHHCT-EEEEEE-CCHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHHH--HHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 56677787778999999999999999999988 7999996432222 37889999999999999998777543
No 40
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=94.31 E-value=0.045 Score=46.32 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCcccCCCC--eeee-------eCcccHHHHHHHHHHcCCeEEEee
Q psy13824 148 WREILRKIRSAGLNAVSTYVGWSSHEAQPG--TYSF-------DGHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 148 W~drL~kmKaaGlNTV~tyV~WnlHEPe~G--~FDF-------sG~~DLd~FI~lA~e~GL~VILRp 205 (226)
..+.|+-+|++|+|+|.+.=++...+..-| .-|| .+..+|.++++.|++.||+|||-.
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 467899999999999998744543321122 2222 234799999999999999999853
No 41
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=93.77 E-value=0.1 Score=50.11 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=44.5
Q ss_pred ccCCCCC----HhHH---HHHHHHHHHcCCCEEEEeeecCc------ccCCCC-ee-------------eeeCcccHHHH
Q psy13824 138 FHYFRSP----QERW---REILRKIRSAGLNAVSTYVGWSS------HEAQPG-TY-------------SFDGHRDVEYF 190 (226)
Q Consensus 138 iHYfRvP----~e~W---~drL~kmKaaGlNTV~tyV~Wnl------HEPe~G-~F-------------DFsG~~DLd~F 190 (226)
+|.|.|+ .+.| .+.|.-+|++|+++|-+.=+... |--.+- -| .|....||.++
T Consensus 7 ~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~L 86 (479)
T PRK09441 7 MQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNA 86 (479)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHH
Confidence 4555555 2334 57788899999999987633222 211111 11 23345789999
Q ss_pred HHHHHHcCCeEEEe
Q psy13824 191 MRLAAEEGLYVLLY 204 (226)
Q Consensus 191 I~lA~e~GL~VILR 204 (226)
|+.|++.||+||+-
T Consensus 87 i~~~H~~Gi~vi~D 100 (479)
T PRK09441 87 IDALHENGIKVYAD 100 (479)
T ss_pred HHHHHHCCCEEEEE
Confidence 99999999999985
No 42
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=92.16 E-value=0.63 Score=42.76 Aligned_cols=61 Identities=31% Similarity=0.402 Sum_probs=45.3
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeeec-------CcccCCCCee------eeeCcccHHHHHHHHHHcCCeEEEee
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYVGW-------SSHEAQPGTY------SFDGHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV~W-------nlHEPe~G~F------DFsG~~DLd~FI~lA~e~GL~VILRp 205 (226)
.++.-++.+++++++|+|+|-.-|-+ +-.+|..+.. | -|..-|+.+|+.|++.||.|..++
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~-pg~DpL~~~I~eaHkrGlevHAW~ 90 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKD-PGFDPLEFMIEEAHKRGLEVHAWF 90 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCC-CCccHHHHHHHHHHHcCCEEEEEE
Confidence 47889999999999999999877654 2233422111 1 022389999999999999999887
No 43
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=91.90 E-value=0.71 Score=41.89 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=55.9
Q ss_pred CCCCCHhHHHHHHHHHHHcCC--CEEEEeeecCcccCCCCeeeeeC--cccHHHHHHHHHHcCCeEEEeeccccccc
Q psy13824 140 YFRSPQERWREILRKIRSAGL--NAVSTYVGWSSHEAQPGTYSFDG--HRDVEYFMRLAAEEGLYVLLYSGFSWTMK 212 (226)
Q Consensus 140 YfRvP~e~W~drL~kmKaaGl--NTV~tyV~WnlHEPe~G~FDFsG--~~DLd~FI~lA~e~GL~VILRpGPYIcae 212 (226)
+.....+...+.++++++.|+ .+|-+...|. ..-|.|.|+- .-|..++++..++.|+++++..=|+|...
T Consensus 24 ~~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 24 KADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred ccCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 346678999999999999997 4666666663 4457777653 34899999999999999999999999853
No 44
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=91.82 E-value=0.49 Score=45.21 Aligned_cols=57 Identities=25% Similarity=0.361 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHH---HcCCeEEEee
Q psy13824 148 WREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAA---EEGLYVLLYS 205 (226)
Q Consensus 148 W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~---e~GL~VILRp 205 (226)
=.|.++-+|+.|+|.||.-| |+-.--..|.=.=.|+.|+.+.|++|+ ..||+|++.+
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dF 124 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDF 124 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeec
Confidence 38999999999999999865 776666666666677899998887765 5899999864
No 45
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=91.39 E-value=0.45 Score=49.37 Aligned_cols=58 Identities=26% Similarity=0.348 Sum_probs=42.9
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeee--------cCcc-----cCCCCeeeeeCcccHHHHHHHHHHcCCeEEEee
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVG--------WSSH-----EAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~--------WnlH-----EPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRp 205 (226)
.+.+++.|..+|++|+|+|..-=. |..+ .|. -.|.+..+|.++|+.|+++||.|||-.
T Consensus 250 ~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~---~~~Gtp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 250 REFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVS---SRSGTPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccc---cccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 456888999999999999987521 2211 111 134445799999999999999999863
No 46
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=91.33 E-value=1.5 Score=39.49 Aligned_cols=68 Identities=21% Similarity=0.208 Sum_probs=51.0
Q ss_pred CCHhHHHHHHHHHHHcCCCE--EEEeeecCcccCCCCeeeeeCc--ccHHHHHHHHHHcCCeEEEeecccccc
Q psy13824 143 SPQERWREILRKIRSAGLNA--VSTYVGWSSHEAQPGTYSFDGH--RDVEYFMRLAAEEGLYVLLYSGFSWTM 211 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNT--V~tyV~WnlHEPe~G~FDFsG~--~DLd~FI~lA~e~GL~VILRpGPYIca 211 (226)
...+..++.++++++.||.. +-+.+.|.-.. .-|.|+|+-. -|.+++++..+++|++|++..=|+|+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~-~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEF-QWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCC-cceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 35788899999999999754 54545564221 1246666532 389999999999999999999999974
No 47
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.31 E-value=0.74 Score=44.84 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=58.6
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEee-------------ecCcccCCCCee-eeeCcccHHHHHHHHHHcCCeEEEeeccc
Q psy13824 143 SPQERWREILRKIRSAGLNAVSTYV-------------GWSSHEAQPGTY-SFDGHRDVEYFMRLAAEEGLYVLLYSGFS 208 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~tyV-------------~WnlHEPe~G~F-DFsG~~DLd~FI~lA~e~GL~VILRpGPY 208 (226)
..++...|.+.+++++|+|||-.-| +|+.. .||++ -=.|..-|...|++|++.||.|+.++-||
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~--~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDG--LPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccC--cCcccCCCCCCChHHHHHHHHHhcCCeeeechhhc
Confidence 4578899999999999999986533 23322 24443 22355588999999999999999999999
Q ss_pred cccccCC--CCcccccccc
Q psy13824 209 WTMKSSW--DGTCIGFLWT 225 (226)
Q Consensus 209 IcaesT~--~g~~PaWL~~ 225 (226)
.-|-.|- ...-|.|+.+
T Consensus 139 ~~a~~~s~~~~~~p~~~~~ 157 (418)
T COG1649 139 RMAPPTSPLTKRHPHWLTT 157 (418)
T ss_pred ccCCCCChhHhhCCCCccc
Confidence 8764443 2355677655
No 48
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=91.00 E-value=0.54 Score=46.91 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=39.8
Q ss_pred HHHHH-HHHHHcCCCEEEE-eeecCcccCCCCee----------eeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 148 WREIL-RKIRSAGLNAVST-YVGWSSHEAQPGTY----------SFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 148 W~drL-~kmKaaGlNTV~t-yV~WnlHEPe~G~F----------DFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
..+.| .-+|++|+|+|.. +|+..-.+.. -.| .|.+..||.++|+.|++.||+|||-
T Consensus 158 i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~-wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD 225 (613)
T TIGR01515 158 LADQLIPYVKELGFTHIELLPVAEHPFDGS-WGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILD 225 (613)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCC-CCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 44564 8889999999998 4654311100 012 3445579999999999999999997
No 49
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=90.97 E-value=0.9 Score=37.22 Aligned_cols=70 Identities=16% Similarity=0.320 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCEEEEeee----c-----CcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccccccccCCCCcc
Q psy13824 149 REILRKIRSAGLNAVSTYVG----W-----SSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSWDGTC 219 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~----W-----nlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIcaesT~~g~~ 219 (226)
++-.+.+|++|+|+|.++.= | ..+.+.|+- . +.-|.++++.|++.||+|+.+.-.-.... .+ ..-
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~---~Dllge~v~a~h~~Girv~ay~~~~~d~~-~~-~~H 76 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-K---RDLLGEQVEACHERGIRVPAYFDFSWDED-AA-ERH 76 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-C---cCHHHHHHHHHHHCCCEEEEEEeeecChH-HH-HhC
Confidence 34567899999999999431 2 344555543 1 23678999999999999999866553321 11 134
Q ss_pred ccccc
Q psy13824 220 IGFLW 224 (226)
Q Consensus 220 PaWL~ 224 (226)
|.|+.
T Consensus 77 PeW~~ 81 (132)
T PF14871_consen 77 PEWFV 81 (132)
T ss_pred Cceee
Confidence 66654
No 50
>PRK12313 glycogen branching enzyme; Provisional
Probab=90.95 E-value=0.51 Score=47.06 Aligned_cols=55 Identities=15% Similarity=0.229 Sum_probs=38.0
Q ss_pred HHH-HHHHHHcCCCEEEEe-eecCcccCCCCee----------eeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 149 REI-LRKIRSAGLNAVSTY-VGWSSHEAQPGTY----------SFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 149 ~dr-L~kmKaaGlNTV~ty-V~WnlHEPe~G~F----------DFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
.+. |.-+|++|+|+|..- |+ .......-.| .|.+..||.+||+.|+++||.|||-
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~-~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD 239 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLM-EHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILD 239 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchh-cCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 345 599999999999864 42 1100000011 3455679999999999999999996
No 51
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=89.65 E-value=0.7 Score=45.65 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=41.8
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCC-CCeee----------eeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQ-PGTYS----------FDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe-~G~FD----------FsG~~DLd~FI~lA~e~GL~VILR 204 (226)
-.-+.++|.-+|++|+++|-+.=++.. |. ...|| |....||+++++.|+++||+|||-
T Consensus 32 l~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD 100 (551)
T PRK10933 32 LRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILD 100 (551)
T ss_pred HHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 455778999999999999977522211 21 12232 334578999999999999999985
No 52
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=89.40 E-value=1.5 Score=40.07 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=50.9
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCC--eeeeeCc--ccHHHHHHHHHHcCCeEEEeecccccc
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYVGWSSHEAQPG--TYSFDGH--RDVEYFMRLAAEEGLYVLLYSGFSWTM 211 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G--~FDFsG~--~DLd~FI~lA~e~GL~VILRpGPYIca 211 (226)
..+..++.++++++.||..=.+.+.|.... ..| .|+|+-. -|..++|+..++.|++|++..=|+|..
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~ 92 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGP 92 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCC
Confidence 577789999999999985444444444333 244 7877643 389999999999999999988899874
No 53
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=89.24 E-value=0.56 Score=46.07 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=43.1
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeee----------eeCcccHHHHHHHHHHcCCeEEEee
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYS----------FDGHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FD----------FsG~~DLd~FI~lA~e~GL~VILRp 205 (226)
+-.-+.+.|.-+|++|+|+|-+.=+....+. ...|| |.+..||.++++.|+++||+|||-.
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQK-DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCC-CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3456788999999999999987622221111 11232 3445799999999999999999863
No 54
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=88.89 E-value=0.56 Score=44.67 Aligned_cols=61 Identities=13% Similarity=0.306 Sum_probs=45.0
Q ss_pred HHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccccccccCCCCcccccccc
Q psy13824 155 IRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSWDGTCIGFLWT 225 (226)
Q Consensus 155 mKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIcaesT~~g~~PaWL~~ 225 (226)
.|+++.=|-+.-.=|+..||++|.|+|+ --|++.+-|++|||.+-- =+ --|....|.|++.
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lhG--Ht-----LvW~~q~P~W~~~ 115 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLHG--HT-----LVWHSQVPDWLFG 115 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeecc--ce-----eeecccCCchhhc
Confidence 4555554555555699999999999999 778999999999998531 11 1355577999864
No 55
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=88.74 E-value=2.2 Score=38.52 Aligned_cols=67 Identities=15% Similarity=0.246 Sum_probs=51.3
Q ss_pred CHhHHHHHHHHHHHcCCC--EEEEeeecCcccC------CCCeeeeeCc--ccHHHHHHHHHHcCCeEEEeeccccc
Q psy13824 144 PQERWREILRKIRSAGLN--AVSTYVGWSSHEA------QPGTYSFDGH--RDVEYFMRLAAEEGLYVLLYSGFSWT 210 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlN--TV~tyV~WnlHEP------e~G~FDFsG~--~DLd~FI~lA~e~GL~VILRpGPYIc 210 (226)
+.+..++.++++++.||. +|-+.+.|....- .-+.|+|+.. -|..++++..++.|++|++..=|+|.
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~ 99 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADG 99 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcc
Confidence 578889999999999994 5555555654321 2356777643 48999999999999999998888874
No 56
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=87.95 E-value=0.96 Score=44.64 Aligned_cols=56 Identities=23% Similarity=0.360 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEe-ee-------cCc-----ccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 146 ERWREILRKIRSAGLNAVSTY-VG-------WSS-----HEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~ty-V~-------Wnl-----HEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
.-..+.|.-+|++|+|+|..- |+ |.. ..+.+ .|.+..+|.++|+.|+++||.|||-
T Consensus 111 ~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD 179 (542)
T TIGR02402 111 DAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILD 179 (542)
T ss_pred HHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 345667999999999999875 32 211 11111 2445679999999999999999986
No 57
>PRK10785 maltodextrin glucosidase; Provisional
Probab=87.85 E-value=1.1 Score=44.74 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=42.7
Q ss_pred HhHHHHHHHHHHHcCCCEEEEe-eecC--cccCCCCee-----eeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 145 QERWREILRKIRSAGLNAVSTY-VGWS--SHEAQPGTY-----SFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~ty-V~Wn--lHEPe~G~F-----DFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
-+-..+.|.-+|++|+|+|-.- |+=+ .|--...-| .|.+..||.++++.|++.||+|||-
T Consensus 178 l~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD 245 (598)
T PRK10785 178 LDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLD 245 (598)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3567889999999999999876 4421 121111111 2445579999999999999999985
No 58
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=87.74 E-value=2.3 Score=38.96 Aligned_cols=66 Identities=9% Similarity=0.185 Sum_probs=51.7
Q ss_pred CHhHHHHHHHHHHHcCCC--EEEEeeecCcccCCCCeeeeeCc--ccHHHHHHHHHHcCCeEEEeeccccccc
Q psy13824 144 PQERWREILRKIRSAGLN--AVSTYVGWSSHEAQPGTYSFDGH--RDVEYFMRLAAEEGLYVLLYSGFSWTMK 212 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlN--TV~tyV~WnlHEPe~G~FDFsG~--~DLd~FI~lA~e~GL~VILRpGPYIcae 212 (226)
..+..++.++++++.+|. +|-+.+.|. . .-+.|+|+.. -|..++++..++.|++|++..=|+|...
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~--~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~ 91 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLDIHYM--D-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVD 91 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEChhhh--C-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCC
Confidence 477899999999999995 555555553 2 3467777543 4899999999999999999999999743
No 59
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=87.15 E-value=1.3 Score=43.43 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=42.7
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeee----------eeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYS----------FDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FD----------FsG~~DLd~FI~lA~e~GL~VILR 204 (226)
+-.-+.+.|.-+|++|+|+|-..=+..... ....|| |.+..|+.++++.|+++||+|||-
T Consensus 26 dl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~-~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 26 DFPGLTSKLDYLKWLGVDALWLLPFFQSPL-RDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred CHHHHHHhHHHHHHCCCCEEEECCCcCCCC-CCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 346688899999999999997762221110 012222 344579999999999999999984
No 60
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=87.01 E-value=3.1 Score=38.00 Aligned_cols=68 Identities=12% Similarity=0.173 Sum_probs=51.6
Q ss_pred CHhHHHHHHHHHHHcCCC--EEEEeeecCcccC---CCCeeeeeCc--ccHHHHHHHHHHcCCeEEEeecccccc
Q psy13824 144 PQERWREILRKIRSAGLN--AVSTYVGWSSHEA---QPGTYSFDGH--RDVEYFMRLAAEEGLYVLLYSGFSWTM 211 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlN--TV~tyV~WnlHEP---e~G~FDFsG~--~DLd~FI~lA~e~GL~VILRpGPYIca 211 (226)
..+...+.++++++.||. .|-+...|---.. .-|.|+|+-. -|..++++..+++|++|++..=|+|+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~ 96 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLK 96 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccC
Confidence 477889999999999995 5555555633222 3456777543 488999999999999999999999874
No 61
>PRK09505 malS alpha-amylase; Reviewed
Probab=86.96 E-value=1.2 Score=45.56 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHcCCCEEEEe-eecCcccCC----CC------------------eeeeeCcccHHHHHHHHHHcCCeEE
Q psy13824 146 ERWREILRKIRSAGLNAVSTY-VGWSSHEAQ----PG------------------TYSFDGHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~ty-V~WnlHEPe----~G------------------~FDFsG~~DLd~FI~lA~e~GL~VI 202 (226)
.-+.+.|.-+|++|+|+|-+. ++=+.|... .| .-.|....+|+++++.|+++||+||
T Consensus 230 ~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~Vi 309 (683)
T PRK09505 230 RGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRIL 309 (683)
T ss_pred HHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 347788999999999999865 433322211 11 1124445799999999999999999
Q ss_pred Eee
Q psy13824 203 LYS 205 (226)
Q Consensus 203 LRp 205 (226)
|-.
T Consensus 310 lD~ 312 (683)
T PRK09505 310 FDV 312 (683)
T ss_pred EEE
Confidence 863
No 62
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=86.86 E-value=3.7 Score=37.48 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=49.3
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccC---CCCeeeeeCc--ccHHHHHHHHHHcCCeEEEeecccccc
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEA---QPGTYSFDGH--RDVEYFMRLAAEEGLYVLLYSGFSWTM 211 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEP---e~G~FDFsG~--~DLd~FI~lA~e~GL~VILRpGPYIca 211 (226)
.+...+.++++++.||..=.+.+.+....- ..+.|+|.-. -|..++++..+++|++|++..=|+|+.
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~ 99 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQ 99 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccC
Confidence 567899999999999965555443322221 1234666432 489999999999999999999999974
No 63
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=86.80 E-value=3 Score=38.32 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=51.4
Q ss_pred CHhHHHHHHHHHHHcCCC--EEEEeeecCcccCCCCeeeeeCc--ccHHHHHHHHHHcCCeEEEeeccccccc
Q psy13824 144 PQERWREILRKIRSAGLN--AVSTYVGWSSHEAQPGTYSFDGH--RDVEYFMRLAAEEGLYVLLYSGFSWTMK 212 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlN--TV~tyV~WnlHEPe~G~FDFsG~--~DLd~FI~lA~e~GL~VILRpGPYIcae 212 (226)
..+...+.++++++.||. .+-+.+.|. . .-+.|+|+-. -|..++++..++.|++|++..=|+|+..
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~--~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~ 91 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYM--D-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVD 91 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhh--C-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCC
Confidence 477889999999999994 555555553 2 3455766542 4789999999999999999999999853
No 64
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=86.74 E-value=2.4 Score=39.80 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=47.3
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEee-------ecCcccCCCCeeeee-C-cccHHHHHHHHHHcCCeEEEeecccc
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYV-------GWSSHEAQPGTYSFD-G-HRDVEYFMRLAAEEGLYVLLYSGFSW 209 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV-------~WnlHEPe~G~FDFs-G-~~DLd~FI~lA~e~GL~VILRpGPYI 209 (226)
.++..++.++.+++.|+|+|-+.| .+....|..-+..-. . ..|+.++++.++++||++|.|.=-|.
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~Fk 85 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFK 85 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEec
Confidence 357789999999999999998865 243333322222111 1 26999999999999999999975554
No 65
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=86.60 E-value=3.6 Score=28.69 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=43.9
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
|....+.++.+.+.|+|-..+|++ .++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~--~~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIA--DTSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEE--ecCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 467788999999999999999973 2333 58887765 5778999999999998754
No 66
>PRK05402 glycogen branching enzyme; Provisional
Probab=86.56 E-value=1.3 Score=45.20 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=37.6
Q ss_pred HHH-HHHHHHcCCCEEEEe-ee-cC---cccCCCCe-----eeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 149 REI-LRKIRSAGLNAVSTY-VG-WS---SHEAQPGT-----YSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 149 ~dr-L~kmKaaGlNTV~ty-V~-Wn---lHEPe~G~-----FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
.++ |.-+|++|+|+|..- |+ .. .|--.+.- -.|.+..||.+||+.|+++||.|||-
T Consensus 268 ~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD 334 (726)
T PRK05402 268 ADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILD 334 (726)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 345 377899999999875 42 10 01111111 12445679999999999999999997
No 67
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=86.00 E-value=1.4 Score=44.25 Aligned_cols=61 Identities=18% Similarity=0.363 Sum_probs=43.1
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEe-eecCcccCCCCee--------eeeCc----ccHHHHHHHHHHcCCeEEEe
Q psy13824 144 PQERWREILRKIRSAGLNAVSTY-VGWSSHEAQPGTY--------SFDGH----RDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~ty-V~WnlHEPe~G~F--------DFsG~----~DLd~FI~lA~e~GL~VILR 204 (226)
..+.-++.+..|++++||.++.| ..|.+|.|-++.= |+.|+ .-+...|+.|++.|++++.=
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Y 189 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAY 189 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehh
Confidence 45678999999999999999999 6799999988644 22232 35789999999999998863
No 68
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=85.85 E-value=3 Score=38.68 Aligned_cols=74 Identities=14% Similarity=0.207 Sum_probs=54.5
Q ss_pred ccCCCC---CHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCc--ccH--HHHHHHHHHcCCeEEEeeccccc
Q psy13824 138 FHYFRS---PQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGH--RDV--EYFMRLAAEEGLYVLLYSGFSWT 210 (226)
Q Consensus 138 iHYfRv---P~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~--~DL--d~FI~lA~e~GL~VILRpGPYIc 210 (226)
+|.+|+ ..+..++.++++++.||..=.+.+.+..++ ..+.|+|+.. -|. +++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 478899999999999995444443333333 3477777653 377 99999999999999999999998
Q ss_pred cc
Q psy13824 211 MK 212 (226)
Q Consensus 211 ae 212 (226)
-.
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 69
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=85.85 E-value=1.3 Score=44.02 Aligned_cols=54 Identities=17% Similarity=0.323 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCCEEEEe-ee---------------cCcc-----cCCCCeeeeeC--------cccHHHHHHHHHHcC
Q psy13824 148 WREILRKIRSAGLNAVSTY-VG---------------WSSH-----EAQPGTYSFDG--------HRDVEYFMRLAAEEG 198 (226)
Q Consensus 148 W~drL~kmKaaGlNTV~ty-V~---------------WnlH-----EPe~G~FDFsG--------~~DLd~FI~lA~e~G 198 (226)
..+.|.-+|++|+|+|..- |+ |... .|++ . |.. ..+|.++|+.|+++|
T Consensus 166 ~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~-~--y~~~p~~~~~~~~efk~lV~~~H~~G 242 (605)
T TIGR02104 166 VSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEG-S--YSTNPYDPATRIRELKQMIQALHENG 242 (605)
T ss_pred chhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcCh-h--hhcCCCccchHHHHHHHHHHHHHHCC
Confidence 3467999999999999875 32 2111 0100 0 111 258999999999999
Q ss_pred CeEEEe
Q psy13824 199 LYVLLY 204 (226)
Q Consensus 199 L~VILR 204 (226)
|.|||-
T Consensus 243 i~VilD 248 (605)
T TIGR02104 243 IRVIMD 248 (605)
T ss_pred CEEEEE
Confidence 999986
No 70
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=84.88 E-value=4 Score=37.60 Aligned_cols=66 Identities=12% Similarity=0.082 Sum_probs=51.4
Q ss_pred CHhHHHHHHHHHHHcCCCE--EEEeeecCcccCCCCeeeeeCc--ccHHHHHHHHHHcCCeEEEeeccccccc
Q psy13824 144 PQERWREILRKIRSAGLNA--VSTYVGWSSHEAQPGTYSFDGH--RDVEYFMRLAAEEGLYVLLYSGFSWTMK 212 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNT--V~tyV~WnlHEPe~G~FDFsG~--~DLd~FI~lA~e~GL~VILRpGPYIcae 212 (226)
..+..++.++++++.||.. |-+.+.|. ...+.|+|+-. -|..++++..++.|++|++..=|+|+..
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~---~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEHT---DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHHh---CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 4778899999999999954 44444442 34567777643 3889999999999999999999999854
No 71
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=84.67 E-value=1.7 Score=37.58 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEE
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VI 202 (226)
-.|++.++.++++|++.|+..+. ..|+ .....+|+ ..+++++-+.++++||.|.
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~ 69 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIP 69 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCce
Confidence 47999999999999999999643 2221 11122333 2368899999999999975
No 72
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=84.47 E-value=3.3 Score=36.64 Aligned_cols=65 Identities=11% Similarity=0.194 Sum_probs=48.9
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCee--eeeC--cccHHHHHHHHHHcCCeEEEeecccc
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTY--SFDG--HRDVEYFMRLAAEEGLYVLLYSGFSW 209 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~F--DFsG--~~DLd~FI~lA~e~GL~VILRpGPYI 209 (226)
..+...+.++.+++.|+..=.+.+.+...+ ..|.| +|+. .-|..++++.+++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~-~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTD-GYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECccccc-CCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 578899999999999996444444433333 34666 5542 34899999999999999999988887
No 73
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=84.31 E-value=2.2 Score=44.88 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=44.6
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCC-C---------eeeeeCcccHHHHHHHHHHcCCeEEEeec
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQP-G---------TYSFDGHRDVEYFMRLAAEEGLYVLLYSG 206 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~-G---------~FDFsG~~DLd~FI~lA~e~GL~VILRpG 206 (226)
-+.+.+.|.-++++|+++|-+.=++....... | .-+|.+..+++++++.|+++||.||+-.=
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 46799999999999999997653332110000 1 11345678999999999999999998743
No 74
>PLN02361 alpha-amylase
Probab=84.23 E-value=4.2 Score=39.09 Aligned_cols=59 Identities=10% Similarity=0.131 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCcccC---CCCe-ee----eeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGWSSHEA---QPGT-YS----FDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~WnlHEP---e~G~-FD----FsG~~DLd~FI~lA~e~GL~VILR 204 (226)
....+.+.-++++|++.|-+.=+.....+ .+.. |+ |....+|.++|+.|++.||+||+-
T Consensus 29 ~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D 95 (401)
T PLN02361 29 RNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMAD 95 (401)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 34466788899999999988744332221 1211 11 344579999999999999999984
No 75
>KOG2230|consensus
Probab=84.16 E-value=2.6 Score=43.48 Aligned_cols=68 Identities=22% Similarity=0.485 Sum_probs=50.8
Q ss_pred CCeEEECCeeeEEeeccccCC---C--CCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHH
Q psy13824 121 ANTFRMDGRPFRFVSGEFHYF---R--SPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAA 195 (226)
Q Consensus 121 ~~~F~ldGkpf~ilgGeiHYf---R--vP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~ 195 (226)
+..|.++|.|.++-|++..+. | ..-+.-+--|+-.+++|+|++|+ |.- |.|. + |+|-++|.
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----GvYE-s-----d~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----GVYE-S-----DYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----cccc-c-----hhHHHHhh
Confidence 457899999999999986652 2 22344555788999999999998 642 3332 3 68999999
Q ss_pred HcCCeEE
Q psy13824 196 EEGLYVL 202 (226)
Q Consensus 196 e~GL~VI 202 (226)
+.||-|-
T Consensus 393 ~lGilVW 399 (867)
T KOG2230|consen 393 SLGILVW 399 (867)
T ss_pred hccceeh
Confidence 9998763
No 76
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=84.07 E-value=2.1 Score=48.17 Aligned_cols=64 Identities=19% Similarity=0.140 Sum_probs=46.6
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCee----------eeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTY----------SFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~F----------DFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
+-+.|.+.+.-+|++|+|+|-+.=.+.........| .|.+..+++++++.|+++||.|||-.=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 347799999999999999997763333211111122 2456789999999999999999997544
No 77
>PLN02960 alpha-amylase
Probab=84.05 E-value=2.5 Score=44.88 Aligned_cols=58 Identities=22% Similarity=0.246 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCCEEEEe-ee-------cCcccC--CCCeeeeeCcccHHHHHHHHHHcCCeEEEee
Q psy13824 148 WREILRKIRSAGLNAVSTY-VG-------WSSHEA--QPGTYSFDGHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 148 W~drL~kmKaaGlNTV~ty-V~-------WnlHEP--e~G~FDFsG~~DLd~FI~lA~e~GL~VILRp 205 (226)
-++.|.-+|++|+|+|..- |+ |...-. ..=.-.|....+|.+||+.|+++||.|||-.
T Consensus 419 ~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 419 TQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3456999999999999985 32 221100 0000123345789999999999999999974
No 78
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=83.89 E-value=1.7 Score=41.94 Aligned_cols=66 Identities=23% Similarity=0.355 Sum_probs=42.0
Q ss_pred cCCCCCHhHHHHHHHHHH-HcCCCEEEEeeecCcc--------c-CCCCe--eeeeCcccHHHHHHHHHHcCCeEEEeec
Q psy13824 139 HYFRSPQERWREILRKIR-SAGLNAVSTYVGWSSH--------E-AQPGT--YSFDGHRDVEYFMRLAAEEGLYVLLYSG 206 (226)
Q Consensus 139 HYfRvP~e~W~drL~kmK-aaGlNTV~tyV~WnlH--------E-Pe~G~--FDFsG~~DLd~FI~lA~e~GL~VILRpG 206 (226)
|..-.-++.|+..|+.++ +.||..||.. ++. | ..+|. |||+ .||+++|...++||+-.+..|
T Consensus 32 ~a~~~l~~~~q~~l~~~~~~~gf~yvR~h---~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel~ 105 (486)
T PF01229_consen 32 RANLLLRADWQEQLRELQEELGFRYVRFH---GLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVELG 105 (486)
T ss_dssp -GGGGGBHHHHHHHHHHHCCS--SEEEES----TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE-
T ss_pred chHHHhhHHHHHHHHHHHhccCceEEEEE---eeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEEE
Confidence 333455778999999997 6999999984 333 1 22332 9999 999999999999999766655
Q ss_pred cccc
Q psy13824 207 FSWT 210 (226)
Q Consensus 207 PYIc 210 (226)
.-..
T Consensus 106 f~p~ 109 (486)
T PF01229_consen 106 FMPM 109 (486)
T ss_dssp SB-G
T ss_pred echh
Confidence 4333
No 79
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=83.49 E-value=3.1 Score=44.08 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=46.3
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCC---ee---e-------eeCcccHHHHHHHHHHcCCeEEEeeccc
Q psy13824 143 SPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPG---TY---S-------FDGHRDVEYFMRLAAEEGLYVLLYSGFS 208 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G---~F---D-------FsG~~DLd~FI~lA~e~GL~VILRpGPY 208 (226)
.+-+.+.+.+.-++++|+|+|-..=+. +..+| .| | |.+..+++++++.|+++||.||+-.=|=
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~---~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~N 92 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPIL---AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPN 92 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCc---cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 344779999999999999999775322 22222 12 2 3466899999999999999999975443
No 80
>PRK12568 glycogen branching enzyme; Provisional
Probab=83.33 E-value=2.8 Score=43.50 Aligned_cols=55 Identities=15% Similarity=0.362 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCEEEEe-ee-------cCcccCCCCee----eeeCcccHHHHHHHHHHcCCeEEEee
Q psy13824 149 REILRKIRSAGLNAVSTY-VG-------WSSHEAQPGTY----SFDGHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~ty-V~-------WnlHEPe~G~F----DFsG~~DLd~FI~lA~e~GL~VILRp 205 (226)
++.|.-+|++|+|+|..- |+ |... | -|-| .|.+..++.+|++.|+++||.|||-.
T Consensus 273 ~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~-~-~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~ 339 (730)
T PRK12568 273 EQLIPYVQQLGFTHIELLPITEHPFGGSWGYQ-P-LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDW 339 (730)
T ss_pred HHHHHHHHHcCCCEEEECccccCCCCCCCCCC-C-CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 344688999999999875 32 3211 0 0111 34456799999999999999999963
No 81
>KOG1065|consensus
Probab=81.74 E-value=3.9 Score=42.99 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=54.5
Q ss_pred ccCCCCC---HhHHHHHHHHHHHcCCC--EEEEeeecCcccCCCCeeeeeC----cccHHHHHHHHHHcCCeEEEeeccc
Q psy13824 138 FHYFRSP---QERWREILRKIRSAGLN--AVSTYVGWSSHEAQPGTYSFDG----HRDVEYFMRLAAEEGLYVLLYSGFS 208 (226)
Q Consensus 138 iHYfRvP---~e~W~drL~kmKaaGlN--TV~tyV~WnlHEPe~G~FDFsG----~~DLd~FI~lA~e~GL~VILRpGPY 208 (226)
+|..||- -+..+|..+.++++|+. +.-+.+.|. ++.=||+- ..++.+|++..++.|+++++-+=|+
T Consensus 300 f~~~RwgY~nls~~~dvv~~~~~agiPld~~~~DiDyM-----d~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~ 374 (805)
T KOG1065|consen 300 FQLCRWGYKNLSVVRDVVENYRAAGIPLDVIVIDIDYM-----DGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPF 374 (805)
T ss_pred ceecccccccHHHHHHHHHHHHHcCCCcceeeeehhhh-----hcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCc
Confidence 5556653 67789999999999997 666667664 22223332 2368999999999999999999999
Q ss_pred cccccC
Q psy13824 209 WTMKSS 214 (226)
Q Consensus 209 IcaesT 214 (226)
|..-++
T Consensus 375 is~~~~ 380 (805)
T KOG1065|consen 375 ISTNSS 380 (805)
T ss_pred cccCcc
Confidence 987666
No 82
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=81.54 E-value=5.9 Score=37.14 Aligned_cols=70 Identities=19% Similarity=0.310 Sum_probs=48.9
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCc--ccHHHHHHHHHHcCCeEEEeeccccccccC
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGH--RDVEYFMRLAAEEGLYVLLYSGFSWTMKSS 214 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~--~DLd~FI~lA~e~GL~VILRpGPYIcaesT 214 (226)
..+...+.++.+++.|+-.=...+...... ..+.|.|+.. -|.+++++.+++.|++|++..-|+|...+.
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 377889999999999996555555422222 4556666543 389999999999999999999999986554
No 83
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=81.05 E-value=3.8 Score=41.90 Aligned_cols=57 Identities=23% Similarity=0.337 Sum_probs=42.4
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEe-e-------ecCcccCCCCeee------eeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 144 PQERWREILRKIRSAGLNAVSTY-V-------GWSSHEAQPGTYS------FDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~ty-V-------~WnlHEPe~G~FD------FsG~~DLd~FI~lA~e~GL~VILR 204 (226)
..+.-.+.|.-+|++|+++|+.- | -|.. .|+.- |....||.+|||.|+++||-|||-
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGY----q~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGY----QGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCC----CcceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 36777889999999999999973 1 1322 12222 333479999999999999999995
No 84
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=81.04 E-value=2.3 Score=46.25 Aligned_cols=55 Identities=22% Similarity=0.342 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCCEEEEe-eecCcccCC---CC-----eee----------ee--CcccHHHHHHHHHHcCCeEEEe
Q psy13824 150 EILRKIRSAGLNAVSTY-VGWSSHEAQ---PG-----TYS----------FD--GHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 150 drL~kmKaaGlNTV~ty-V~WnlHEPe---~G-----~FD----------Fs--G~~DLd~FI~lA~e~GL~VILR 204 (226)
+.|.-+|++|+|+|..- |+=...|.. .| -|| |. +..++.++++.|+++||.|||-
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILD 266 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILD 266 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEE
Confidence 56789999999999875 442111111 11 021 23 5678999999999999999996
No 85
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=80.14 E-value=3.3 Score=39.78 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=58.1
Q ss_pred eeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCe-eeeeCcccHHHHHHHHHHcCCeEEEeeccccccc
Q psy13824 134 VSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGT-YSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMK 212 (226)
Q Consensus 134 lgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~-FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIcae 212 (226)
+|=++.+.|.|.+.=..-+++|...|+..|-| ++|.|++.. =.|+ -++++++.|.+.|++||+-.-|=|--+
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 56677888889888888899999999999988 788887752 2344 678999999999999999877766533
No 86
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=79.79 E-value=14 Score=33.69 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=57.7
Q ss_pred eEEECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeee--CcccHHHHHHHHHHcCCe
Q psy13824 123 TFRMDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFD--GHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 123 ~F~ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFs--G~~DLd~FI~lA~e~GL~ 200 (226)
++.++|.++++++|=.--. +++.-.+-.+++|++|+..++.|.+= |+---+.|. |...+..+-+.+++.||.
T Consensus 20 ~~~~g~~~~~~iaGPCsie--~~~~~~~~A~~lk~~g~~~~r~~~~k----pRTs~~s~~G~g~~gl~~l~~~~~~~Gl~ 93 (266)
T PRK13398 20 DVVIGGEEKIIIAGPCAVE--SEEQMVKVAEKLKELGVHMLRGGAFK----PRTSPYSFQGLGEEGLKILKEVGDKYNLP 93 (266)
T ss_pred CEEEcCCCEEEEEeCCcCC--CHHHHHHHHHHHHHcCCCEEEEeeec----CCCCCCccCCcHHHHHHHHHHHHHHcCCC
Confidence 3777777888888843221 47788899999999999999998754 333334666 467889999999999999
Q ss_pred EEEe
Q psy13824 201 VLLY 204 (226)
Q Consensus 201 VILR 204 (226)
++-.
T Consensus 94 ~~te 97 (266)
T PRK13398 94 VVTE 97 (266)
T ss_pred EEEe
Confidence 8764
No 87
>PLN00196 alpha-amylase; Provisional
Probab=79.53 E-value=4.3 Score=39.23 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecCc---ccCCCCe-ee-----eeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 147 RWREILRKIRSAGLNAVSTYVGWSS---HEAQPGT-YS-----FDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 147 ~W~drL~kmKaaGlNTV~tyV~Wnl---HEPe~G~-FD-----FsG~~DLd~FI~lA~e~GL~VILR 204 (226)
...+.|.-+|++|+++|-+.=+... |--.+.. |+ |....+|.++++.|++.||+||+-
T Consensus 45 ~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilD 111 (428)
T PLN00196 45 FLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIAD 111 (428)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3578899999999999988743322 2111211 22 333468999999999999999986
No 88
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=79.33 E-value=8.6 Score=35.89 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=54.0
Q ss_pred ccCCCC---CHhHHHHHHHHHHHcCCC--EEEEeeecCcccCCCCeeeeeCc--ccHHHHHHHHHHcCCeEEEeeccccc
Q psy13824 138 FHYFRS---PQERWREILRKIRSAGLN--AVSTYVGWSSHEAQPGTYSFDGH--RDVEYFMRLAAEEGLYVLLYSGFSWT 210 (226)
Q Consensus 138 iHYfRv---P~e~W~drL~kmKaaGlN--TV~tyV~WnlHEPe~G~FDFsG~--~DLd~FI~lA~e~GL~VILRpGPYIc 210 (226)
+|.+|+ ..+..++..+++++.+|- ++-..+.| ++ .-+.|.|+.. -|.+++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy--~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDF--QD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCch--hc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455554 478899999999999994 55555544 33 3467777653 48899999999999999998889987
Q ss_pred c
Q psy13824 211 M 211 (226)
Q Consensus 211 a 211 (226)
-
T Consensus 90 ~ 90 (332)
T cd06601 90 Y 90 (332)
T ss_pred c
Confidence 3
No 89
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=79.30 E-value=2.9 Score=36.80 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCCEEEEeeecCc---ccCCCCeeeeeCcccHHHHHHHHHHcCCeE
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSS---HEAQPGTYSFDGHRDVEYFMRLAAEEGLYV 201 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~Wnl---HEPe~G~FDFsG~~DLd~FI~lA~e~GL~V 201 (226)
++.+++||++|++.|...+- .. ++.-.+..+++ +..+.++.+++.|+.|
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v 174 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYD---DRVDTLENAKKAGLKV 174 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEE
Confidence 45566666666666666543 11 11111222333 4445566666666664
No 90
>PRK01060 endonuclease IV; Provisional
Probab=78.93 E-value=6.6 Score=34.15 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeE--EEeeccccc
Q psy13824 148 WREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYV--LLYSGFSWT 210 (226)
Q Consensus 148 W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~V--ILRpGPYIc 210 (226)
+++.++.++++|++.|+..+- +-++-..+.++-. +++++-++++++||.+ +.--+||.-
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~~---~~~~lk~~~~~~gl~~~~~~~h~~~~~ 74 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEEL---NIEAFKAACEKYGISPEDILVHAPYLI 74 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCHH---HHHHHHHHHHHcCCCCCceEEecceEe
Confidence 889999999999999998542 1121112222222 6888999999999983 333578853
No 91
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=78.65 E-value=9.2 Score=36.13 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=57.5
Q ss_pred eEEECCeeeEEeeccccCCCC-CHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeC--cccHHHHHHHHHHcCC
Q psy13824 123 TFRMDGRPFRFVSGEFHYFRS-PQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDG--HRDVEYFMRLAAEEGL 199 (226)
Q Consensus 123 ~F~ldGkpf~ilgGeiHYfRv-P~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG--~~DLd~FI~lA~e~GL 199 (226)
...++|.++.+++| +=.+ +++.-.+..+.+|++|.+.++.|++= |+---|.|.| ..-|+-+.+.+++.||
T Consensus 86 ~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl 158 (335)
T PRK08673 86 DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGL 158 (335)
T ss_pred CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCC
Confidence 47777888888888 2233 37788889999999999999998883 5555578876 4567777777899999
Q ss_pred eEEEe
Q psy13824 200 YVLLY 204 (226)
Q Consensus 200 ~VILR 204 (226)
.++-.
T Consensus 159 ~v~te 163 (335)
T PRK08673 159 PIVTE 163 (335)
T ss_pred cEEEe
Confidence 98764
No 92
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=78.29 E-value=5.5 Score=34.20 Aligned_cols=43 Identities=23% Similarity=0.265 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 147 RWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 147 ~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
.+++.+++++++|++.|+...++ ..+++++.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 47999999999999999984321 13678999999999999764
No 93
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=78.27 E-value=7.2 Score=35.40 Aligned_cols=59 Identities=15% Similarity=0.291 Sum_probs=47.5
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeee----cCccc----------------CCCCeeeeeCcccHHHHHHHHHHcCCeEE
Q psy13824 143 SPQERWREILRKIRSAGLNAVSTYVG----WSSHE----------------AQPGTYSFDGHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~tyV~----WnlHE----------------Pe~G~FDFsG~~DLd~FI~lA~e~GL~VI 202 (226)
.|.+..++.++.|...++|++..++- |.+.- +..|.|.-+ |+.++++-|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEE
Confidence 46899999999999999999999976 74431 123455555 99999999999999998
Q ss_pred Ee
Q psy13824 203 LY 204 (226)
Q Consensus 203 LR 204 (226)
.-
T Consensus 90 PE 91 (303)
T cd02742 90 PE 91 (303)
T ss_pred Ee
Confidence 64
No 94
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=78.01 E-value=4.9 Score=36.32 Aligned_cols=48 Identities=17% Similarity=0.293 Sum_probs=35.9
Q ss_pred HHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHH----HHHcCCeEEEeeccc
Q psy13824 151 ILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRL----AAEEGLYVLLYSGFS 208 (226)
Q Consensus 151 rL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~l----A~e~GL~VILRpGPY 208 (226)
...++|++|++.|-+ -|--++-.|. +.|+.+.. |.++||.+|+|.|=-
T Consensus 78 S~~mLkd~G~~~vii-----GHSERR~~f~-----Etd~~v~~K~~~a~~~gl~pIvCiGEt 129 (250)
T PRK00042 78 SAEMLKDLGVKYVII-----GHSERRQYFG-----ETDELVNKKVKAALKAGLTPILCVGET 129 (250)
T ss_pred CHHHHHHCCCCEEEe-----CcccccCccC-----cCHHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 456899999999999 4544444443 33667776 999999999998854
No 95
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=77.85 E-value=9.2 Score=36.56 Aligned_cols=54 Identities=19% Similarity=0.360 Sum_probs=41.8
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEee
Q psy13824 143 SPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRp 205 (226)
+..+.|+++++.+|++||+.....+- ....+.-+ .|....+.|++.|+++.+.|
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~~---~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIG------SSDSWQPD---QLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecc------cCCcccHH---HHHHHHHHHHhcCCEEEEEe
Confidence 37899999999999999998887553 11222223 77888899999999998864
No 96
>PRK14706 glycogen branching enzyme; Provisional
Probab=77.78 E-value=5.2 Score=40.63 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=36.1
Q ss_pred HHHH-HHHHHcCCCEEEEe-eecCcccCCCCe--e----------eeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 149 REIL-RKIRSAGLNAVSTY-VGWSSHEAQPGT--Y----------SFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 149 ~drL-~kmKaaGlNTV~ty-V~WnlHEPe~G~--F----------DFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
.+.| .-+|++|+|+|+.- |. -| |..+. | .|.+..||.+|++.|+++||.|||-
T Consensus 170 ~~~l~~ylk~lG~t~velmPv~--e~-~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD 236 (639)
T PRK14706 170 AHRLGEYVTYMGYTHVELLGVM--EH-PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILD 236 (639)
T ss_pred HHHHHHHHHHcCCCEEEccchh--cC-CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3444 67999999999864 21 01 11111 1 1233579999999999999999986
No 97
>PRK14705 glycogen branching enzyme; Provisional
Probab=77.28 E-value=5.4 Score=43.72 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCCEEEEe-ee-------cCccc--CCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 150 EILRKIRSAGLNAVSTY-VG-------WSSHE--AQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 150 drL~kmKaaGlNTV~ty-V~-------WnlHE--Pe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
+.+.-+|++|+|+|..- |+ |...- ...=.-.|.+..||.+||+.|+++||.|||-
T Consensus 770 ~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD 834 (1224)
T PRK14705 770 ELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLD 834 (1224)
T ss_pred HHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34689999999999875 31 32110 0000112445679999999999999999986
No 98
>PRK03705 glycogen debranching enzyme; Provisional
Probab=76.66 E-value=4.1 Score=41.58 Aligned_cols=54 Identities=17% Similarity=0.339 Sum_probs=35.9
Q ss_pred HHHHHHHcCCCEEEEe-eecCcccCCC---C-----eee----------eeCc-----ccHHHHHHHHHHcCCeEEEe
Q psy13824 151 ILRKIRSAGLNAVSTY-VGWSSHEAQP---G-----TYS----------FDGH-----RDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 151 rL~kmKaaGlNTV~ty-V~WnlHEPe~---G-----~FD----------FsG~-----~DLd~FI~lA~e~GL~VILR 204 (226)
.|.-+|++|+|+|..- |+=...|++. | -|| |... .++.++++.|++.||+|||-
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlD 261 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEE
Confidence 5889999999999875 4311111110 1 011 2221 47999999999999999986
No 99
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=76.31 E-value=4.7 Score=35.28 Aligned_cols=59 Identities=15% Similarity=0.282 Sum_probs=42.9
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEE-Eeec
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL-LYSG 206 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VI-LRpG 206 (226)
...|++.++.++++|++.|+..+. .. +..++..+++ ..+++++.+.+++.||.|. +.++
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~-~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~ 74 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVD-ET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLS 74 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecC-Cc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecC
Confidence 466999999999999999999532 22 2223445554 2468899999999999974 4444
No 100
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=76.08 E-value=3.7 Score=38.00 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCCEEEEe-eec---Ccc--------cCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 149 REILRKIRSAGLNAVSTY-VGW---SSH--------EAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~ty-V~W---nlH--------EPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
.+.|.-+|.+|+++|-+- ++= ..| +-.| .|.+..|++++++.|++.||+||+-
T Consensus 32 ~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~---~~Gt~~d~~~li~~~H~~gi~vi~D 96 (505)
T COG0366 32 TEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDP---HFGTEEDFKELVEEAHKRGIKVILD 96 (505)
T ss_pred HHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCc---ccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 389999999999999543 221 111 1111 5667789999999999999999985
No 101
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=76.01 E-value=3.9 Score=41.80 Aligned_cols=54 Identities=20% Similarity=0.389 Sum_probs=36.1
Q ss_pred HHHHHHHcCCCEEEEe-ee-cC--cccCCCC-----eee----------ee---CcccHHHHHHHHHHcCCeEEEe
Q psy13824 151 ILRKIRSAGLNAVSTY-VG-WS--SHEAQPG-----TYS----------FD---GHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 151 rL~kmKaaGlNTV~ty-V~-Wn--lHEPe~G-----~FD----------Fs---G~~DLd~FI~lA~e~GL~VILR 204 (226)
.|.-+|++|+|+|..- |+ .. .+..+.| .|| |+ ...+|.++|+.|+++||+|||-
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlD 264 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILD 264 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4888999999999876 43 21 0011111 111 11 2358999999999999999986
No 102
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=75.78 E-value=17 Score=33.40 Aligned_cols=69 Identities=20% Similarity=0.389 Sum_probs=51.3
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEee-ecCc-ccCCCCe-----eeeeCc--ccHHHHHHHHHHcCCeEEEeeccccccc
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYV-GWSS-HEAQPGT-----YSFDGH--RDVEYFMRLAAEEGLYVLLYSGFSWTMK 212 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV-~Wnl-HEPe~G~-----FDFsG~--~DLd~FI~lA~e~GL~VILRpGPYIcae 212 (226)
+.+..++.++++++.||-.=.+.+ .|.. ++..-|. |+|+-. -|..++|+..++.|++|++..=|+|+..
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~~ 98 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLADD 98 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 788899999999999996544444 3743 2333342 444332 4899999999999999999999999853
No 103
>PRK10658 putative alpha-glucosidase; Provisional
Probab=75.64 E-value=13 Score=37.98 Aligned_cols=68 Identities=12% Similarity=0.129 Sum_probs=50.5
Q ss_pred CCHhHHHHHHHHHHHcCCC--EEEEeeecCcccCCCCeeeeeCc--ccHHHHHHHHHHcCCeEEEeecccccc
Q psy13824 143 SPQERWREILRKIRSAGLN--AVSTYVGWSSHEAQPGTYSFDGH--RDVEYFMRLAAEEGLYVLLYSGFSWTM 211 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlN--TV~tyV~WnlHEPe~G~FDFsG~--~DLd~FI~lA~e~GL~VILRpGPYIca 211 (226)
.+.+...+.++++++.|+- ++....+|.-. -.-+.|.|+-. -|.+++++..++.|++|++..=|||..
T Consensus 280 ~~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~~-~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 280 YDEATVNSFIDGMAERDLPLHVFHFDCFWMKE-FQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEchhhhcC-CceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 3566788999999999995 44455556321 12346666532 388999999999999999999999974
No 104
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=74.84 E-value=3.5 Score=33.04 Aligned_cols=66 Identities=12% Similarity=0.082 Sum_probs=46.0
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeec-CcccCC--CCeeeeeCcccHHHHHHHHHHcCCeEEEeecccccc
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGW-SSHEAQ--PGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTM 211 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~W-nlHEPe--~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIca 211 (226)
.+..++.++.++++|...+.+...+ +...+. +..++.. ...|+++.+.|+++|+.+.+.|-|+...
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~i~lE~~~~~~~ 138 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERL-AENLRELAEIAEEYGVRIALENHPGPFS 138 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHH-HHHHHHHHHHHHHHTSEEEEE-SSSSSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHH-HHHHHHHHhhhhhhcceEEEecccCccc
Confidence 5788999999999999999887552 111111 1122211 1367889999999999999998887763
No 105
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=74.75 E-value=11 Score=34.42 Aligned_cols=59 Identities=10% Similarity=0.218 Sum_probs=45.2
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeee--cCcc---cC------------------------CCCeeeeeCcccHHHHHHH
Q psy13824 143 SPQERWREILRKIRSAGLNAVSTYVG--WSSH---EA------------------------QPGTYSFDGHRDVEYFMRL 193 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~tyV~--WnlH---EP------------------------e~G~FDFsG~~DLd~FI~l 193 (226)
.|.+..++.++.|...++|++..++- |.+- .| ..|.|.- .|+.++++-
T Consensus 14 ~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~---~di~eiv~y 90 (326)
T cd06564 14 YSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTK---EEFKELIAY 90 (326)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccH---HHHHHHHHH
Confidence 47899999999999999999998753 4332 11 1233433 499999999
Q ss_pred HHHcCCeEEEe
Q psy13824 194 AAEEGLYVLLY 204 (226)
Q Consensus 194 A~e~GL~VILR 204 (226)
|++.|+.||.-
T Consensus 91 A~~rgI~vIPE 101 (326)
T cd06564 91 AKDRGVNIIPE 101 (326)
T ss_pred HHHcCCeEecc
Confidence 99999999863
No 106
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=74.67 E-value=1.7 Score=37.70 Aligned_cols=58 Identities=10% Similarity=0.096 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecccccc
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTM 211 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIca 211 (226)
-...++..++|.+.|.+.++|....+..-.+... ++.++.+.|++.||.||+. +|...
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE--~~l~~ 136 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE--PYLRG 136 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE--ECECH
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE--EecCc
Confidence 5678888999999999999998777666555566 9999999999999999998 55443
No 107
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=74.37 E-value=2.4 Score=40.97 Aligned_cols=43 Identities=16% Similarity=0.402 Sum_probs=27.9
Q ss_pred cCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccccccccCCCCcccccccc
Q psy13824 173 EAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSWDGTCIGFLWT 225 (226)
Q Consensus 173 EPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIcaesT~~g~~PaWL~~ 225 (226)
.+..|.|||+.+..=..|++.|++.|...++ --.+.||.|+++
T Consensus 92 ~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~----------aFSNSPP~~MT~ 134 (384)
T PF14587_consen 92 LPADGSYDWDADAGQRWFLKAAKERGVNIFE----------AFSNSPPWWMTK 134 (384)
T ss_dssp B-TTS-B-TTSSHHHHHHHHHHHHTT---EE----------EE-SSS-GGGSS
T ss_pred cCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE----------EeecCCCHHHhc
Confidence 3677999999877777899999999999776 234478999875
No 108
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=74.31 E-value=11 Score=33.46 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=43.3
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeeecCcccC--CCC--eeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYVGWSSHEA--QPG--TYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV~WnlHEP--e~G--~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
.++..++.++++++.|.+.|-+|.....-.+ .+| .++-+ .+.++++.|+++|+.|.+-
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e---~l~~~~~~A~~~g~~v~~H 179 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEE---ELRAIVDEAHKAGLYVAAH 179 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHH---HHHHHHHHHHHcCCEEEEE
Confidence 3788999999999999999999875432111 122 23333 7889999999999998764
No 109
>PRK14566 triosephosphate isomerase; Provisional
Probab=72.04 E-value=9.2 Score=35.03 Aligned_cols=76 Identities=18% Similarity=0.130 Sum_probs=46.3
Q ss_pred ECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEee
Q psy13824 126 MDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 126 ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRp 205 (226)
++|.++.+.+=.+|....-.-.=+=...++|++|++.|-+ -|--++..|.=+ +..+.+=++.|.++||.+|+|.
T Consensus 62 ~~g~~i~v~AQnv~~~~~Ga~TGevS~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCv 135 (260)
T PRK14566 62 LDGSLVRMGAQNVSQHDFGAYTGEVSGQMLKDAGCRYVII-----GHSERRRMYGET-SNIVAEKFAAAQKHGLTPILCV 135 (260)
T ss_pred ccCceEEEEecccccccCCCccCccCHHHHHHcCCCEEEE-----CcccccCCCCcC-HHHHHHHHHHHHHCCCEEEEEc
Confidence 4454555444344542221222233456899999999998 444444444322 2344557888999999999998
Q ss_pred cc
Q psy13824 206 GF 207 (226)
Q Consensus 206 GP 207 (226)
|=
T Consensus 136 GE 137 (260)
T PRK14566 136 GE 137 (260)
T ss_pred CC
Confidence 84
No 110
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=71.97 E-value=6.1 Score=35.95 Aligned_cols=63 Identities=27% Similarity=0.396 Sum_probs=43.4
Q ss_pred eecc-ccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 134 VSGE-FHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 134 lgGe-iHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
.||. .|+... +...++-++.+|+.||++|++ ..|..+.+ ..+..++|+.|+++|++|+--.|.
T Consensus 72 ~GGtl~E~a~~-q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG~ 135 (244)
T PF02679_consen 72 PGGTLFEVAYQ-QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVGK 135 (244)
T ss_dssp E-HHHHHHHHH-TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES-
T ss_pred CCcHHHHHHHh-cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeecccC
Confidence 4555 344333 678899999999999999977 46766665 336678999999999999999884
No 111
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=71.91 E-value=7 Score=42.45 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=18.6
Q ss_pred ccHHHHHHHHHHcCCeEEEe
Q psy13824 185 RDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 185 ~DLd~FI~lA~e~GL~VILR 204 (226)
.+|.++|+.|+++||.|||-
T Consensus 555 ~EfK~LV~alH~~GI~VILD 574 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILD 574 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEe
Confidence 57999999999999999986
No 112
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=71.69 E-value=8.7 Score=34.51 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=39.0
Q ss_pred HHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccc
Q psy13824 151 ILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFS 208 (226)
Q Consensus 151 rL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPY 208 (226)
...++|++|++.|-+ -|--++-.|.-+ +.++.+=++.|.++||.+|+|.|=-
T Consensus 76 S~~mL~d~G~~~vii-----GHSERR~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiGE~ 127 (242)
T cd00311 76 SAEMLKDAGAKYVII-----GHSERRQYFGET-DEDVAKKVKAALEAGLTPILCVGET 127 (242)
T ss_pred CHHHHHHcCCCEEEe-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 446889999999999 344344344433 4577888899999999999998843
No 113
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=71.59 E-value=9.4 Score=34.27 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=48.0
Q ss_pred ccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHH-HcCCeEEEeec
Q psy13824 136 GEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAA-EEGLYVLLYSG 206 (226)
Q Consensus 136 GeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~-e~GL~VILRpG 206 (226)
+.....+.+.+.-.+..+.+.++|++.|+++.+-...+...|..-|.....++++.++.+ +..+-+++|++
T Consensus 10 ~q~~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 10 GYVNNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred ccccCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 334445677899999999999999999999998876666667777773333444444332 33344556655
No 114
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=71.35 E-value=13 Score=33.87 Aligned_cols=57 Identities=21% Similarity=0.355 Sum_probs=44.4
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEee----ecCcccCC----CCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYV----GWSSHEAQ----PGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV----~WnlHEPe----~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
+.++.++.++.|...|+|++..++ ++.-+ |+ +|.|.=+ |+.++++.|++.|+.||..
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~-p~~~~~~~~yT~~---ei~ei~~yA~~~gI~vIPe 79 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGE-PEVGRMRGAYTKE---EIREIDDYAAELGIEVIPL 79 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCC-cccccCCCCcCHH---HHHHHHHHHHHcCCEEEec
Confidence 478999999999999999999885 23322 22 3444444 9999999999999999863
No 115
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=71.21 E-value=9.3 Score=34.72 Aligned_cols=63 Identities=21% Similarity=0.328 Sum_probs=48.6
Q ss_pred eec-cccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 134 VSG-EFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 134 lgG-eiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
.|| -+++ ...+...++-++..|+.||++|++ ..|..+++ ..+..++|++++++|++|+--.|.
T Consensus 59 ~GGtl~E~-~~~q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 59 PGGTLFEI-AHSKGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred CCccHHHH-HHHhhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 455 3444 234467788888999999999977 46777775 347779999999999999988776
No 116
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=71.02 E-value=20 Score=33.39 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=50.4
Q ss_pred ccCCCC---CHhHHHHHHHHHHHcCCCEEEEee-ecCc---------ccC---------CCCeeeeeC---cccHHHHHH
Q psy13824 138 FHYFRS---PQERWREILRKIRSAGLNAVSTYV-GWSS---------HEA---------QPGTYSFDG---HRDVEYFMR 192 (226)
Q Consensus 138 iHYfRv---P~e~W~drL~kmKaaGlNTV~tyV-~Wnl---------HEP---------e~G~FDFsG---~~DLd~FI~ 192 (226)
+|..|. ..+..++.++++++.||..=.+.+ .|.- ..- .-+.++|.. .-|.+++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 555554 377889999999999996444433 2322 111 113334431 137999999
Q ss_pred HHHHcCCeEEEeecccccc
Q psy13824 193 LAAEEGLYVLLYSGFSWTM 211 (226)
Q Consensus 193 lA~e~GL~VILRpGPYIca 211 (226)
..++.|++|+|..=|+|..
T Consensus 93 ~Lh~~G~kv~l~v~P~i~~ 111 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIKL 111 (340)
T ss_pred HHHHCCCEEEEEecCcccc
Confidence 9999999999999998863
No 117
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=70.90 E-value=14 Score=33.15 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=42.9
Q ss_pred cCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 139 HYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 139 HYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
.|...|.+.-++++++..++|+..|++.++-+- ++ .+...++.|+++|+.|..
T Consensus 84 ~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~~---~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 84 GYRHYPDDVVELFVEKAAKNGIDIFRIFDALND---------VR---NLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CccCCCcHHHHHHHHHHHHcCCCEEEEeecCCh---------HH---HHHHHHHHHHHCCCeEEE
Confidence 344567788899999999999999999887554 23 778899999999988765
No 118
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=70.72 E-value=1.8 Score=43.55 Aligned_cols=79 Identities=11% Similarity=0.056 Sum_probs=60.1
Q ss_pred eEEECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcc-cCCCCee----eeeCcccHHHHHHHHHHc
Q psy13824 123 TFRMDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSH-EAQPGTY----SFDGHRDVEYFMRLAAEE 197 (226)
Q Consensus 123 ~F~ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlH-EPe~G~F----DFsG~~DLd~FI~lA~e~ 197 (226)
.|-++++.+..++..-.+.++--++.++++.-|+.+|++++|+. -+- |+-..++ .=+|..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 37788888877877777778888889999999999999999994 344 5522221 112334788999999999
Q ss_pred CCeEEEe
Q psy13824 198 GLYVLLY 204 (226)
Q Consensus 198 GL~VILR 204 (226)
+|+|+++
T Consensus 80 ~lkvlit 86 (587)
T COG3934 80 DLKVLIT 86 (587)
T ss_pred cceEEEE
Confidence 9998875
No 119
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=70.32 E-value=11 Score=33.20 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=36.7
Q ss_pred HHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEee
Q psy13824 151 ILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 151 rL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRp 205 (226)
...++|++|++.|-+ ++-|.+ |.-+ |+.+=++.|.++||.+|++.
T Consensus 73 S~~mLkd~G~~~vii----GHSERR---f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 73 SAEMLKDIGAKGTLI----NHSERR---MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred CHHHHHHcCCCEEEE----CcccCC---CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 346889999999998 455555 5555 68899999999999999987
No 120
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=70.09 E-value=25 Score=33.87 Aligned_cols=88 Identities=15% Similarity=0.125 Sum_probs=59.4
Q ss_pred cccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCC----CeeeeeCc---ccHHHHHHHHHHcCCeEEEeecccc
Q psy13824 137 EFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQP----GTYSFDGH---RDVEYFMRLAAEEGLYVLLYSGFSW 209 (226)
Q Consensus 137 eiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~----G~FDFsG~---~DLd~FI~lA~e~GL~VILRpGPYI 209 (226)
+.+|+.+..+...+.+++++++|++.+.+.--|....... |.+.-+-. .-|..+++.+++.||+.=|+..|..
T Consensus 49 ~~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~ 128 (394)
T PF02065_consen 49 EAYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEM 128 (394)
T ss_dssp HHHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTE
T ss_pred cccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccc
Confidence 3456677889999999999999999988888897653222 43322211 2489999999999999999999987
Q ss_pred ccccCCCC-ccccccc
Q psy13824 210 TMKSSWDG-TCIGFLW 224 (226)
Q Consensus 210 caesT~~g-~~PaWL~ 224 (226)
.+..+.-. .-|.|+.
T Consensus 129 v~~~S~l~~~hPdw~l 144 (394)
T PF02065_consen 129 VSPDSDLYREHPDWVL 144 (394)
T ss_dssp EESSSCHCCSSBGGBT
T ss_pred ccchhHHHHhCcccee
Confidence 65433322 3577864
No 121
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=69.14 E-value=6.8 Score=33.87 Aligned_cols=61 Identities=7% Similarity=-0.024 Sum_probs=41.8
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCC----CeeeeeCcccHHHHHHHHHHcCCeEEEee-cccc
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQP----GTYSFDGHRDVEYFMRLAAEEGLYVLLYS-GFSW 209 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~----G~FDFsG~~DLd~FI~lA~e~GL~VILRp-GPYI 209 (226)
.+.+++.++.++++|..+|.+. ..+.... -.++.. ...|.++.+.|+++|+.+.+-+ +|+.
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~---~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~~~~~~ 154 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLIS---AAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEPLTPYE 154 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEc---CCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEecCCCCc
Confidence 3567788899999999999763 2222111 112211 1368899999999999999987 5664
No 122
>PLN02784 alpha-amylase
Probab=69.07 E-value=11 Score=40.32 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCcccCCCC--eee-------eeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGWSSHEAQPG--TYS-------FDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G--~FD-------FsG~~DLd~FI~lA~e~GL~VILR 204 (226)
....+.+..++++|+++|-+.=+-....+ .| .+| |....+|.++|+.|+++||+||+-
T Consensus 521 ~~I~ekldyL~~LG~taIWLpP~~~s~s~-~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlD 587 (894)
T PLN02784 521 MELGEKAAELSSLGFTVVWLPPPTESVSP-EGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGD 587 (894)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCCCCCCCC-CCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34567888999999999988744322211 12 122 223479999999999999999985
No 123
>PRK09875 putative hydrolase; Provisional
Probab=68.53 E-value=19 Score=33.21 Aligned_cols=63 Identities=13% Similarity=0.197 Sum_probs=48.2
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccccccccCCCCccccccc
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSWDGTCIGFLW 224 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIcaesT~~g~~PaWL~ 224 (226)
.+.-.+.|+.+|++|.+||-- ..+- +. .+|...+-+++++-|+.||..-|-|... +-|.|+.
T Consensus 33 ~~~~~~el~~~~~~Gg~tiVd--------~T~~--g~--GRd~~~l~~is~~tgv~Iv~~TG~y~~~------~~p~~~~ 94 (292)
T PRK09875 33 YAFICQEMNDLMTRGVRNVIE--------MTNR--YM--GRNAQFMLDVMRETGINVVACTGYYQDA------FFPEHVA 94 (292)
T ss_pred HHHHHHHHHHHHHhCCCeEEe--------cCCC--cc--CcCHHHHHHHHHHhCCcEEEcCcCCCCc------cCCHHHh
Confidence 677788999999999999842 2221 11 3599999999999999999999999653 3477765
Q ss_pred c
Q psy13824 225 T 225 (226)
Q Consensus 225 ~ 225 (226)
.
T Consensus 95 ~ 95 (292)
T PRK09875 95 T 95 (292)
T ss_pred c
Confidence 3
No 124
>PLN02429 triosephosphate isomerase
Probab=67.66 E-value=11 Score=35.47 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHH----HHHcCCeEEEeeccc
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRL----AAEEGLYVLLYSGFS 208 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~l----A~e~GL~VILRpGPY 208 (226)
+=...++|++|++.|-+ ++-|. +-. |. +-|++|.. |.++||.+|++.|=.
T Consensus 137 EVSa~mLkd~Gv~~Vii----GHSER-R~~--f~---Etd~~V~~Kv~~al~~GL~pIvCIGE~ 190 (315)
T PLN02429 137 EISVEQLKDLGCKWVIL----GHSER-RHV--IG---EKDEFIGKKAAYALSEGLGVIACIGEK 190 (315)
T ss_pred cCCHHHHHHcCCCEEEe----Ccccc-CCC--CC---cCHHHHHHHHHHHHHCcCEEEEEcCCC
Confidence 33557899999999998 34444 433 43 33677777 999999999999864
No 125
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=67.12 E-value=17 Score=33.67 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=46.1
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeee----cCccc-----------------CCCCeeeeeCcccHHHHHHHHHHcCCeE
Q psy13824 143 SPQERWREILRKIRSAGLNAVSTYVG----WSSHE-----------------AQPGTYSFDGHRDVEYFMRLAAEEGLYV 201 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~tyV~----WnlHE-----------------Pe~G~FDFsG~~DLd~FI~lA~e~GL~V 201 (226)
.|.+..++.++.|...++|++..++- |.+.- +..|.|.- .|+.++++-|++.|+.|
T Consensus 15 ~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~~rgI~v 91 (329)
T cd06568 15 FTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAAERHITV 91 (329)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHHHcCCEE
Confidence 38899999999999999999999873 64431 11233443 49999999999999999
Q ss_pred EEe
Q psy13824 202 LLY 204 (226)
Q Consensus 202 ILR 204 (226)
|.-
T Consensus 92 IPE 94 (329)
T cd06568 92 VPE 94 (329)
T ss_pred EEe
Confidence 964
No 126
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=66.43 E-value=21 Score=33.30 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=45.8
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeee----cCcc----------------------------cCCCCeeeeeCcccHHHH
Q psy13824 143 SPQERWREILRKIRSAGLNAVSTYVG----WSSH----------------------------EAQPGTYSFDGHRDVEYF 190 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~tyV~----WnlH----------------------------EPe~G~FDFsG~~DLd~F 190 (226)
.|.+..++.++.|...++|++..++. |.+- .+..|.|--+ |+.++
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~---di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQE---EIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHH---HHHHH
Confidence 46899999999999999999998762 4221 1113455544 99999
Q ss_pred HHHHHHcCCeEEEe
Q psy13824 191 MRLAAEEGLYVLLY 204 (226)
Q Consensus 191 I~lA~e~GL~VILR 204 (226)
++-|++.|+.||.-
T Consensus 92 v~yA~~rgI~VIPE 105 (357)
T cd06563 92 VAYAAERGITVIPE 105 (357)
T ss_pred HHHHHHcCCEEEEe
Confidence 99999999999964
No 127
>PRK09989 hypothetical protein; Provisional
Probab=65.81 E-value=17 Score=31.53 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 148 WREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 148 W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
.++++++++++|++.|++..+|. .+.+++-++++++||.|..
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 68999999999999999843321 2467888899999999764
No 128
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=65.79 E-value=15 Score=33.10 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=43.1
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeee----cCccc------CCCC---------eeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 143 SPQERWREILRKIRSAGLNAVSTYVG----WSSHE------AQPG---------TYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~tyV~----WnlHE------Pe~G---------~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
.|.++.++.++.|...++|++..++. |.+.= .+.| .|.-+ |+.++++.|++.||.||.
T Consensus 15 ~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~---di~~lv~yA~~~gI~VIP 91 (351)
T PF00728_consen 15 FSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKE---DIRELVAYAKERGIEVIP 91 (351)
T ss_dssp B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHH---HHHHHHHHHHHTT-EEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHH---HHHHHHHHHHHcCCceee
Confidence 46899999999999999999999874 43321 1122 44445 999999999999999996
Q ss_pred e
Q psy13824 204 Y 204 (226)
Q Consensus 204 R 204 (226)
-
T Consensus 92 e 92 (351)
T PF00728_consen 92 E 92 (351)
T ss_dssp E
T ss_pred e
Confidence 4
No 129
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=65.00 E-value=23 Score=27.90 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=32.1
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEE
Q psy13824 142 RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 142 RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VI 202 (226)
-.|++...+.++.+.+.|+..|-. .|. + .-+++++.|+++|+.++
T Consensus 62 ~~~~~~~~~~v~~~~~~g~~~v~~-------~~g------~---~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 62 CVPPDKVPEIVDEAAALGVKAVWL-------QPG------A---ESEELIEAAREAGIRVI 106 (116)
T ss_dssp -S-HHHHHHHHHHHHHHT-SEEEE--------TT------S-----HHHHHHHHHTT-EEE
T ss_pred EcCHHHHHHHHHHHHHcCCCEEEE-------Ecc------h---HHHHHHHHHHHcCCEEE
Confidence 468999999999999999887755 222 2 45889999999999965
No 130
>PRK14565 triosephosphate isomerase; Provisional
Probab=64.71 E-value=15 Score=33.12 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=35.9
Q ss_pred HHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHH----HHHHHcCCeEEEeecccc
Q psy13824 151 ILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFM----RLAAEEGLYVLLYSGFSW 209 (226)
Q Consensus 151 rL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI----~lA~e~GL~VILRpGPYI 209 (226)
...++|++|++.+-+ ++-|. +-.| . +-|+.+ +.|.++||.+|+|.|=..
T Consensus 77 S~~mLkd~G~~~vii----GHSER-R~~f--~---Etd~~V~~Kv~~al~~gl~pIvCiGE~~ 129 (237)
T PRK14565 77 SAKMLKECGCSYVIL----GHSER-RSTF--H---ETDSDIRLKAESAIESGLIPIICVGETL 129 (237)
T ss_pred CHHHHHHcCCCEEEE----Ccccc-cCcC--C---cCHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 456899999999998 33344 3333 3 335666 889999999999999653
No 131
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=64.71 E-value=21 Score=34.43 Aligned_cols=62 Identities=21% Similarity=0.280 Sum_probs=44.8
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeee---cCcccCCCC--------eeeeeCcccHHHHHHHHHHcCCeEEEeecccc
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVG---WSSHEAQPG--------TYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSW 209 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~---WnlHEPe~G--------~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYI 209 (226)
+..-.++++.+|.-|+|++-+.+= =++.=|... +=.|- |+..||+.|+|.||++|.|.=-|+
T Consensus 76 kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARiVvFK 148 (400)
T COG1306 76 KKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARIVVFK 148 (400)
T ss_pred hhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEEEEee
Confidence 456688999999999999988653 222222222 11244 999999999999999999875443
No 132
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=64.12 E-value=15 Score=33.63 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=47.6
Q ss_pred eeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcc--------------cCCCCeee--eeCcccHHHHHHHHHHc
Q psy13824 134 VSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSH--------------EAQPGTYS--FDGHRDVEYFMRLAAEE 197 (226)
Q Consensus 134 lgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlH--------------EPe~G~FD--FsG~~DLd~FI~lA~e~ 197 (226)
-+|++.|....-+...++++.+|++|.+-|-.++.=.-. .+.+=.|. |+--.|..+-++.+.+.
T Consensus 61 R~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~l 140 (248)
T PRK11572 61 RGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADL 140 (248)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHc
Confidence 579999988889999999999999999988776641110 01111221 22224566677777777
Q ss_pred CCeEEE
Q psy13824 198 GLYVLL 203 (226)
Q Consensus 198 GL~VIL 203 (226)
|+.=||
T Consensus 141 G~~rIL 146 (248)
T PRK11572 141 GVARIL 146 (248)
T ss_pred CCCEEE
Confidence 877777
No 133
>PRK07094 biotin synthase; Provisional
Probab=63.85 E-value=7 Score=35.17 Aligned_cols=17 Identities=18% Similarity=0.304 Sum_probs=8.1
Q ss_pred HhHHHHHHHHHHHcCCC
Q psy13824 145 QERWREILRKIRSAGLN 161 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlN 161 (226)
.+.+.+.++.++++|++
T Consensus 164 ~~~~~~~i~~l~~~Gi~ 180 (323)
T PRK07094 164 FENRIACLKDLKELGYE 180 (323)
T ss_pred HHHHHHHHHHHHHcCCe
Confidence 34444444555555543
No 134
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=62.94 E-value=13 Score=32.34 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEE
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VI 202 (226)
..|++.++.++++|+..|+..+. ..++ ....++++ ..+++++-++++++||.|.
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVN 74 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCcee
Confidence 36899999999999999999532 1111 11122333 2368899999999999974
No 135
>PLN02389 biotin synthase
Probab=62.65 E-value=12 Score=35.75 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=9.6
Q ss_pred HHHHHHHHHcCCCEEEE
Q psy13824 149 REILRKIRSAGLNAVST 165 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~t 165 (226)
++.++++|++|++.+..
T Consensus 178 ~E~l~~LkeAGld~~~~ 194 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNH 194 (379)
T ss_pred HHHHHHHHHcCCCEEEe
Confidence 45555666666665544
No 136
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=62.31 E-value=40 Score=36.49 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=53.5
Q ss_pred ccCCCC---CHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeC--cccHHHHHHHHHHcCCeEEEeeccccccc
Q psy13824 138 FHYFRS---PQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDG--HRDVEYFMRLAAEEGLYVLLYSGFSWTMK 212 (226)
Q Consensus 138 iHYfRv---P~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG--~~DLd~FI~lA~e~GL~VILRpGPYIcae 212 (226)
+|.+|+ +.+..++.++++++.||-.=.+...+..+.. -+.|.|+- .-|..++++..++.|+++++-.-|+|..+
T Consensus 190 y~qSR~~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d 268 (978)
T PLN02763 190 YQQCRWSYESAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAE 268 (978)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccC
Confidence 455554 3777899999999999965444444444432 33566654 24889999999999999988878888754
Q ss_pred c
Q psy13824 213 S 213 (226)
Q Consensus 213 s 213 (226)
.
T Consensus 269 ~ 269 (978)
T PLN02763 269 E 269 (978)
T ss_pred C
Confidence 3
No 137
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=62.15 E-value=34 Score=29.80 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=40.8
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHc-CCeEEEeecccc
Q psy13824 142 RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEE-GLYVLLYSGFSW 209 (226)
Q Consensus 142 RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~-GL~VILRpGPYI 209 (226)
..+ ..|++.++.+|++|++.|++.+........ ......+++++.++++++ ++.+.+ -+||.
T Consensus 7 ~~~-~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~i~~-~~~~~ 69 (279)
T cd00019 7 AAG-FGLENALKRAKEIGFDTVAMFLGNPRSWLS----RPLKKERAEKFKAIAEEGPSICLSV-HAPYL 69 (279)
T ss_pred ccc-ccHHHHHHHHHHcCCCEEEEEcCCCCccCC----CCCCHHHHHHHHHHHHHcCCCcEEE-EcCce
Confidence 445 779999999999999999986542211110 111345788888999888 666544 34553
No 138
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=62.14 E-value=3.3 Score=32.57 Aligned_cols=39 Identities=18% Similarity=0.544 Sum_probs=29.3
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCe
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
...|-.-+|...+ .||.|..|||. +|..||++|.|--+|
T Consensus 21 ~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkTpvw 59 (92)
T PF02228_consen 21 THHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKTPVW 59 (92)
T ss_dssp HHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-TTS
T ss_pred HHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcCCee
Confidence 5678888777665 48999999999 999999999987766
No 139
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=62.06 E-value=26 Score=34.29 Aligned_cols=55 Identities=9% Similarity=0.172 Sum_probs=45.1
Q ss_pred ccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 138 FHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 138 iHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
..|.+.|.+.-+++++++.++|++.|++..+-|-.+ +++..++.|+++|+.|.+.
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~------------n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVR------------NLETAVKATKKAGGHAQVA 142 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHH------------HHHHHHHHHHHcCCeEEEE
Confidence 455677888899999999999999999998755431 5788999999999987653
No 140
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=61.96 E-value=29 Score=30.64 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=45.7
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeC-----c-----c-cHHH-HHHHHHHcCCeEEEeecccccc
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDG-----H-----R-DVEY-FMRLAAEEGLYVLLYSGFSWTM 211 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG-----~-----~-DLd~-FI~lA~e~GL~VILRpGPYIca 211 (226)
.+..++..+.+.++|++.-.. .||-.||||..+= . . -+.. +=+.|+++|+.+-.-|=|+...
T Consensus 68 ~~~~~~i~~~l~~~Gi~ve~~-----h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~~~ 141 (259)
T PF00120_consen 68 EDFLEEIVDALEQAGIPVEQI-----HHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFSGD 141 (259)
T ss_dssp HHHHHHHHHHHHHCT--EEEE-----EEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSSTTS
T ss_pred HHHHHHHHHHHHHhhcccccc-----ccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccCCc
Confidence 778999999999999988887 8999999998741 1 1 1112 2357889999999999998763
No 141
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.94 E-value=25 Score=23.40 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=40.1
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeE
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYV 201 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~V 201 (226)
+..-.+.+.-+.+.|+|.+.++. +...++..+.+.|.-+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 45667888999999999988875 2222234555666543 4899999999999875
No 142
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=61.88 E-value=20 Score=31.03 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=37.5
Q ss_pred ccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 138 FHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 138 iHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
+.|-++| .++.+++++++|++.|+.. . |. ..+++++-++++++||.|..
T Consensus 10 ~~~~~~~---l~~~l~~~a~~Gf~~VEl~---~---~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 10 MLFGEYD---FLARFEKAAQCGFRGVEFM---F---PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hhccCCC---HHHHHHHHHHhCCCEEEEc---C---CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 3344444 6889999999999999982 1 11 13789999999999999864
No 143
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=61.68 E-value=7.1 Score=35.95 Aligned_cols=50 Identities=20% Similarity=0.275 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCEEE-Eee-ecC---cccCCCCeeeeeCcccHHHHHHHHHHcCCeE
Q psy13824 149 REILRKIRSAGLNAVS-TYV-GWS---SHEAQPGTYSFDGHRDVEYFMRLAAEEGLYV 201 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~-tyV-~Wn---lHEPe~G~FDFsG~~DLd~FI~lA~e~GL~V 201 (226)
++.+++||++|++++. +.. .-+ .+.-.+++..++ +-.+.++.|++.|+.|
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPT 195 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCcc
Confidence 6889999999999875 110 010 001123333333 4467888999999885
No 144
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=60.92 E-value=14 Score=31.85 Aligned_cols=62 Identities=11% Similarity=-0.024 Sum_probs=39.5
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCC-CeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQP-GTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~-G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
.+++++.++.++++|.+.|.+.-.-...++.. -.++.. ...|.++.++|+++|+.+.+-+-|
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~lE~~~ 155 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRF-IEGLAWAVEQAAAAQVMLAVEIMD 155 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHH-HHHHHHHHHHHHHhCCEEEEEecC
Confidence 35678899999999999998631100001111 011110 135788999999999999998743
No 145
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=60.10 E-value=35 Score=30.65 Aligned_cols=69 Identities=12% Similarity=0.187 Sum_probs=42.1
Q ss_pred eeeEE-eecc-ccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecC-------c-cc--CCCCeeeeeCcccHHHHHHHHHH
Q psy13824 129 RPFRF-VSGE-FHYFRSPQERWREILRKIRSAGLNAVSTYVGWS-------S-HE--AQPGTYSFDGHRDVEYFMRLAAE 196 (226)
Q Consensus 129 kpf~i-lgGe-iHYfRvP~e~W~drL~kmKaaGlNTV~tyV~Wn-------l-HE--Pe~G~FDFsG~~DLd~FI~lA~e 196 (226)
+++++ ..|+ ..+=+||.++|.+.++++.+-|...|-++-+-. . .+ +.+...|+.|..+|.+++.+.+.
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 260 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDH 260 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHh
Confidence 34443 3333 334479999999999999887877665543210 0 01 23346888888777776554433
Q ss_pred c
Q psy13824 197 E 197 (226)
Q Consensus 197 ~ 197 (226)
.
T Consensus 261 a 261 (344)
T TIGR02201 261 A 261 (344)
T ss_pred C
Confidence 3
No 146
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=59.69 E-value=27 Score=30.17 Aligned_cols=53 Identities=13% Similarity=0.225 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
..+++.++.++++|++.|+..... .|+-.+ +++ ..+++++-++++++||.|..
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE
Confidence 358999999999999999983210 011001 222 23688899999999999753
No 147
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=59.67 E-value=6.9 Score=36.64 Aligned_cols=60 Identities=23% Similarity=0.299 Sum_probs=40.6
Q ss_pred CeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEE
Q psy13824 128 GRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 128 Gkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VI 202 (226)
|-..+|+|-+..--+.| +.|++.+..+=++|+|.|.. +|+.-. |..+|.++|+++|.+++
T Consensus 32 ~~~~liiGiA~~GG~lp-~~w~~~i~~Ai~~Gl~IvsG-----LH~~L~---------ddpel~~~A~~~g~~i~ 91 (301)
T PF07755_consen 32 GADTLIIGIAPAGGRLP-PSWRPVILEAIEAGLDIVSG-----LHDFLS---------DDPELAAAAKKNGVRII 91 (301)
T ss_dssp T-SEEEE---STTHCCH-CCHHHHHHHHHHTT-EEEE------SSS-HC---------CHHHHHCCHHCCT--EE
T ss_pred CCCEEEEecCcCCCcCC-HHHHHHHHHHHHcCCCEEec-----Chhhhc---------cCHHHHHHHHHcCCeEe
Confidence 44456666655554554 88999999999999999998 888544 67789999999999865
No 148
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=59.48 E-value=32 Score=29.72 Aligned_cols=19 Identities=5% Similarity=0.197 Sum_probs=9.4
Q ss_pred CCHhHHHHHHHHHHHcCCC
Q psy13824 143 SPQERWREILRKIRSAGLN 161 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlN 161 (226)
.+++..++.-+.+++.|+.
T Consensus 42 ~~~~~~~~l~~~~~~~gl~ 60 (273)
T smart00518 42 LSEETAEKFKEALKENNID 60 (273)
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 4444455544455555553
No 149
>PLN02877 alpha-amylase/limit dextrinase
Probab=59.20 E-value=20 Score=38.68 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=18.2
Q ss_pred ccHHHHHHHHHHcCCeEEEe
Q psy13824 185 RDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 185 ~DLd~FI~lA~e~GL~VILR 204 (226)
.++.++|+.++++||.|||-
T Consensus 466 ~efk~mV~~lH~~GI~VImD 485 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLD 485 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEE
Confidence 36999999999999999986
No 150
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=58.92 E-value=9.9 Score=35.19 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=9.1
Q ss_pred HHHHHHHHcCCCEEEEee
Q psy13824 150 EILRKIRSAGLNAVSTYV 167 (226)
Q Consensus 150 drL~kmKaaGlNTV~tyV 167 (226)
+.++.||++|+|.|.++|
T Consensus 101 e~l~~l~~~G~~rvsiGv 118 (377)
T PRK08599 101 EKLQVLKDSGVNRISLGV 118 (377)
T ss_pred HHHHHHHHcCCCEEEEec
Confidence 444555555555555544
No 151
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=58.40 E-value=29 Score=30.92 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=49.8
Q ss_pred CeeeEEee-cc-c-cCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcc------cCC-CCeeeeeCcccHHHHHH-----
Q psy13824 128 GRPFRFVS-GE-F-HYFRSPQERWREILRKIRSAGLNAVSTYVGWSSH------EAQ-PGTYSFDGHRDVEYFMR----- 192 (226)
Q Consensus 128 Gkpf~ilg-Ge-i-HYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlH------EPe-~G~FDFsG~~DLd~FI~----- 192 (226)
++|++++. |+ . .+=+||.++|.+.++.+.+.|...|-++-+=+.. +.. +...|..|..+|.++..
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a 252 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALA 252 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhC
Confidence 46666554 33 3 4557999999999999988888777665442211 011 23457777766666554
Q ss_pred ------------HHHHcCCeEEEeecc
Q psy13824 193 ------------LAAEEGLYVLLYSGF 207 (226)
Q Consensus 193 ------------lA~e~GL~VILRpGP 207 (226)
+|+..|..+|.=+||
T Consensus 253 ~l~I~~DSGp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 253 KAVVTNDSGLMHVAAALNRPLVALYGS 279 (334)
T ss_pred CEEEeeCCHHHHHHHHcCCCEEEEECC
Confidence 555666665554554
No 152
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=57.77 E-value=35 Score=31.62 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=46.2
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEee----ecCcc---cCC---C----CeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 143 SPQERWREILRKIRSAGLNAVSTYV----GWSSH---EAQ---P----GTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~tyV----~WnlH---EPe---~----G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
.|.+..++.++.|...++|++..++ -|-+- -|+ . |.|.-+ |+.++++-|++.|+.||..
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~---di~elv~yA~~rgI~vIPE 87 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQE---QIREVVAYARDRGIRVVPE 87 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHH---HHHHHHHHHHHcCCEEEEe
Confidence 5689999999999999999999986 37432 111 1 234444 9999999999999999974
No 153
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=57.70 E-value=17 Score=31.52 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=38.9
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCe-eeeeCcccHHHHHHHHHHcCCeEEEee
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGT-YSFDGHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~-FDFsG~~DLd~FI~lA~e~GL~VILRp 205 (226)
.+..++.++.++++|..+|.+...+......+.+ ++- -...|.++.+.|+++|+.+.+-|
T Consensus 84 ~~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 84 RDGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHAT-LVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHcCCEEEEEe
Confidence 3568889999999999998764322111111111 111 11356788889999999999987
No 154
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=57.63 E-value=16 Score=40.84 Aligned_cols=91 Identities=13% Similarity=0.187 Sum_probs=54.1
Q ss_pred ceeEEEecCCeEEECCeeeEEeec-c--ccCCC--CCHhHHHHHHHHHHHcCCCEEEEe-ee-cCcc-cC--CCCee---
Q psy13824 113 QTFTVNYSANTFRMDGRPFRFVSG-E--FHYFR--SPQERWREILRKIRSAGLNAVSTY-VG-WSSH-EA--QPGTY--- 179 (226)
Q Consensus 113 r~~~v~~~~~~F~ldGkpf~ilgG-e--iHYfR--vP~e~W~drL~kmKaaGlNTV~ty-V~-WnlH-EP--e~G~F--- 179 (226)
+++-+.++ ..+.|||+.++-+.| + -..+. -+-+.|++.|+.+|++|.|+|-.. ++ =... -| -..++
T Consensus 95 ~~~y~~V~-P~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~id 173 (1464)
T TIGR01531 95 GGGYFVVL-PMLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLN 173 (1464)
T ss_pred CceEEEeC-CeeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcC
Confidence 34444443 567777733333222 1 12222 245789999999999999998763 32 1100 00 00111
Q ss_pred -ee----eCcccHHHHHHHHHHc-CCeEEEe
Q psy13824 180 -SF----DGHRDVEYFMRLAAEE-GLYVLLY 204 (226)
Q Consensus 180 -DF----sG~~DLd~FI~lA~e~-GL~VILR 204 (226)
+| .|..|+.++++.|++. ||+||+-
T Consensus 174 P~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilD 204 (1464)
T TIGR01531 174 QHFKSQKDGKNDVQALVEKLHRDWNVLSITD 204 (1464)
T ss_pred hhhcccCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 13 2567899999999996 9999984
No 155
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=57.32 E-value=21 Score=32.02 Aligned_cols=43 Identities=14% Similarity=0.256 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
.++++...++|+..|++.+..+ +++ .+.+.++.|+++|+.|.+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------~~~---~~~~~i~~ak~~G~~v~~ 127 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------EFD---EALPLIKAIKEKGYEVFF 127 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------cHH---HHHHHHHHHHHCCCeEEE
Confidence 4567777888888888876443 344 667778888888887665
No 156
>KOG0470|consensus
Probab=57.27 E-value=13 Score=39.03 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCc-ccCCCCee---ee--------eC-----cccHHHHHHHHHHcCCeEEEe
Q psy13824 148 WREILRKIRSAGLNAVSTYVGWSS-HEAQPGTY---SF--------DG-----HRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 148 W~drL~kmKaaGlNTV~tyV~Wnl-HEPe~G~F---DF--------sG-----~~DLd~FI~lA~e~GL~VILR 204 (226)
=+++|..+|.+|.|+|+.--.=++ |+-.-.-| +| +. ..++..+++.|++.||-|+|-
T Consensus 257 teKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLD 330 (757)
T KOG0470|consen 257 TEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLD 330 (757)
T ss_pred hhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehh
Confidence 355699999999999997422233 33322212 12 00 138999999999999999984
No 157
>PRK15492 triosephosphate isomerase; Provisional
Probab=57.07 E-value=23 Score=32.30 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
+=...++|++|++.|-+ -|--++-.|.=+ +..+.+=++.|.++||.+|+|.|=
T Consensus 84 evSa~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~a~~~gl~pIvCiGE 136 (260)
T PRK15492 84 DISPLMLKEIGTQLVMI-----GHSERRHKFGET-DQEENAKVLAALKHDFTTLLCVGE 136 (260)
T ss_pred cCCHHHHHHcCCCEEEE-----CccccccccCcc-hHHHHHHHHHHHHCCCEEEEEcCC
Confidence 33456899999999999 444444444322 234455778899999999999985
No 158
>PTZ00333 triosephosphate isomerase; Provisional
Probab=57.06 E-value=24 Score=32.03 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=39.4
Q ss_pred HHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccc
Q psy13824 151 ILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFS 208 (226)
Q Consensus 151 rL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPY 208 (226)
...++|++|++.|-+ -|--++-.|.=+ +.++.+=++.|.++||.+|++.|=-
T Consensus 81 S~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~I~~Kv~~al~~gl~pIlCvGE~ 132 (255)
T PTZ00333 81 SAEMLKDLGINWTIL-----GHSERRQYFGET-NEIVAQKVKNALENGLKVILCIGET 132 (255)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 346899999999999 454445455322 4577788889999999999999854
No 159
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=57.03 E-value=30 Score=31.96 Aligned_cols=61 Identities=20% Similarity=0.375 Sum_probs=43.9
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeC---cccHHHHHHHHHHcCCeEEEe
Q psy13824 143 SPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDG---HRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG---~~DLd~FI~lA~e~GL~VILR 204 (226)
..-+..++-++-+.++|+..|.+..-|...+ ....+||+. ..||.++++-|++.|..|+|+
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw 92 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLW 92 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEE
Confidence 3567889999999999999999988898732 234666653 469999999999999998884
No 160
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=56.10 E-value=27 Score=31.52 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=54.2
Q ss_pred EECCeeeEEeeccccCCC-CCHhHHHHHHHHHHHcCCCEEEEe-eecCccc-CCCCee-------eeeCccc--------
Q psy13824 125 RMDGRPFRFVSGEFHYFR-SPQERWREILRKIRSAGLNAVSTY-VGWSSHE-AQPGTY-------SFDGHRD-------- 186 (226)
Q Consensus 125 ~ldGkpf~ilgGeiHYfR-vP~e~W~drL~kmKaaGlNTV~ty-V~WnlHE-Pe~G~F-------DFsG~~D-------- 186 (226)
.++|++...+.|..|+.. .+..+-+--++.||++|+.++-.- ..=++.+ -+||.+ ||++++.
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~tna~Gsl~~~~~pGdlv~~~D~I~~t~~~pl~g~~~~d 126 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLILTNAAGGLRQDWGPGTPVLISDHINLTARSPLIGPRFVD 126 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEEEcccccCCCCCCCCCEEeechhcccCCCCCCCCCccCC
Confidence 678999999999999764 446777899999999999766443 3334443 245533 4443211
Q ss_pred ----H-HHHHHHHHHcCCeEEEeeccccc
Q psy13824 187 ----V-EYFMRLAAEEGLYVLLYSGFSWT 210 (226)
Q Consensus 187 ----L-d~FI~lA~e~GL~VILRpGPYIc 210 (226)
. .++.+.|++.|+. ++=|=|+|
T Consensus 127 ~~~~yd~~Lr~~a~~~~~~--~~~GvY~~ 153 (237)
T TIGR01698 127 LTDAYSPRLRELAERVDPP--LAEGVYAW 153 (237)
T ss_pred CCcccCHHHHHHHHHcCCC--ccCEEEEE
Confidence 1 1233667777764 44566666
No 161
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=55.66 E-value=6.4 Score=36.23 Aligned_cols=65 Identities=18% Similarity=0.083 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccCCCCeee--eeCcccHHHH-HHHHHHcCCeEEEeeccccccccCCCCccccc
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEAQPGTYS--FDGHRDVEYF-MRLAAEEGLYVLLYSGFSWTMKSSWDGTCIGF 222 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FD--FsG~~DLd~F-I~lA~e~GL~VILRpGPYIcaesT~~g~~PaW 222 (226)
-+++.||+..|+.+|-+..+|-+--..+++|- |+ .|..+ ...|.+.|+++-+..| --+.++||.|
T Consensus 14 ~eDlekMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~---rl~~~E~~Ra~~~Gl~~~vavG------vHPr~iP~e~ 81 (254)
T COG1099 14 FEDLEKMALSGIREVITLAHDPYPMKTAEVYLDHFR---RLLGVEPERAEKAGLKLKVAVG------VHPRAIPPEL 81 (254)
T ss_pred HHHHHHHHHhChhhhhhcccCCCCcccHHHHHHHHH---HHHccchhhHHhhCceeeEEec------cCCCCCCchH
Confidence 57999999999999999887775444555552 33 33334 5668999999877655 3455666653
No 162
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=55.19 E-value=55 Score=29.67 Aligned_cols=65 Identities=11% Similarity=0.207 Sum_probs=41.0
Q ss_pred eeEE-eeccccCC-CCCHhHHHHHHHHHHHcCCCEEEEeeecCccc-------------CCCCeeeeeCcccHHHHHHHH
Q psy13824 130 PFRF-VSGEFHYF-RSPQERWREILRKIRSAGLNAVSTYVGWSSHE-------------AQPGTYSFDGHRDVEYFMRLA 194 (226)
Q Consensus 130 pf~i-lgGeiHYf-RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHE-------------Pe~G~FDFsG~~DLd~FI~lA 194 (226)
++++ .-|+-+.. |||.|+|.+.++.+++.|...|-+ +.-.| +.+...|..|..+|.++..+.
T Consensus 184 ~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~---ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali 260 (352)
T PRK10422 184 NYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLT---SGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALI 260 (352)
T ss_pred CeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEE---cCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHH
Confidence 4443 33443333 799999999999998888876644 33221 123457888887777766544
Q ss_pred HHc
Q psy13824 195 AEE 197 (226)
Q Consensus 195 ~e~ 197 (226)
+..
T Consensus 261 ~~a 263 (352)
T PRK10422 261 DHA 263 (352)
T ss_pred HhC
Confidence 333
No 163
>KOG0626|consensus
Probab=55.09 E-value=19 Score=36.30 Aligned_cols=58 Identities=16% Similarity=0.293 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCcccCCC---CeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGWSSHEAQP---GTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~---G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
..+++|++.||++|++.-|..|.|+..=|.- |.-+-.|..-...+|+...++||...+
T Consensus 91 h~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~V 151 (524)
T KOG0626|consen 91 HRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFV 151 (524)
T ss_pred hhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEE
Confidence 3689999999999999999999999987743 456777777778899999999999554
No 164
>PLN02561 triosephosphate isomerase
Probab=55.05 E-value=25 Score=32.03 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccc
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFS 208 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPY 208 (226)
+=...++|++|++.|-+ -|--++..|.=+ +..+.+=++.|.++||.+|++.|=.
T Consensus 78 evS~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvGE~ 131 (253)
T PLN02561 78 EISAEMLVNLGIPWVIL-----GHSERRALLGES-NEFVGDKVAYALSQGLKVIACVGET 131 (253)
T ss_pred cCCHHHHHHcCCCEEEE-----CcccccCccCCC-hHHHHHHHHHHHHCcCEEEEEcCCC
Confidence 33557899999999999 444444444332 3455666778999999999999864
No 165
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=54.74 E-value=19 Score=34.32 Aligned_cols=52 Identities=19% Similarity=0.187 Sum_probs=36.1
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEe----eecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEE
Q psy13824 144 PQERWREILRKIRSAGLNAVSTY----VGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~ty----V~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VI 202 (226)
|+....+++++++++|+..|+.. ++|..-+.+. ..+++++-++++++||.|.
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~-------~~~~~~lk~~L~~~GL~v~ 85 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER-------DQIVRRFKKALDETGLKVP 85 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH-------HHHHHHHHHHHHHhCCeEE
Confidence 34456899999999999999864 2222211111 1256789999999999965
No 166
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=54.00 E-value=32 Score=33.56 Aligned_cols=86 Identities=8% Similarity=0.067 Sum_probs=63.9
Q ss_pred eEEECCeeeEEeeccccCCCCC---HhHHHHHHHHHHHcCCC--EEEEe--eecCcccCCCCeeeeeCcccHHHHHHHHH
Q psy13824 123 TFRMDGRPFRFVSGEFHYFRSP---QERWREILRKIRSAGLN--AVSTY--VGWSSHEAQPGTYSFDGHRDVEYFMRLAA 195 (226)
Q Consensus 123 ~F~ldGkpf~ilgGeiHYfRvP---~e~W~drL~kmKaaGlN--TV~ty--V~WnlHEPe~G~FDFsG~~DLd~FI~lA~ 195 (226)
...+++..|+|+.++-+-.+.+ ++.-+.--+.+++.|++ .+... ..-|+--|.+..++++ ..-+.+-|+.|+
T Consensus 150 a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA~ 228 (413)
T PTZ00372 150 AYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRCE 228 (413)
T ss_pred HHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHHH
Confidence 3567778999999988776544 56666777788888875 23333 3368888888888876 336778899999
Q ss_pred HcCCe-EEEeecccc
Q psy13824 196 EEGLY-VLLYSGFSW 209 (226)
Q Consensus 196 e~GL~-VILRpGPYI 209 (226)
+.|.. |++-||-+.
T Consensus 229 ~LGa~~VV~HPGs~~ 243 (413)
T PTZ00372 229 QLGIKLYNFHPGSTV 243 (413)
T ss_pred HcCCCEEEECCCcCC
Confidence 99998 778899864
No 167
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=53.02 E-value=37 Score=30.26 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=47.4
Q ss_pred CeeeEE--eeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCc-ccC--------CCCeeeeeCcccHHHHHHHHHH
Q psy13824 128 GRPFRF--VSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSS-HEA--------QPGTYSFDGHRDVEYFMRLAAE 196 (226)
Q Consensus 128 Gkpf~i--lgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~Wnl-HEP--------e~G~FDFsG~~DLd~FI~lA~e 196 (226)
++++++ .||+.-+=+||.++|.+.++.+.+-|...|-+ +.- .|. ....-+..|..+|.+++.+.+.
T Consensus 177 ~~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~---~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~ 253 (322)
T PRK10964 177 AGPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLP---WGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAG 253 (322)
T ss_pred CCCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEe---CCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHh
Confidence 445543 35543334699999999999998888765432 221 111 1123567788888888777666
Q ss_pred cCCeEEEeecc
Q psy13824 197 EGLYVLLYSGF 207 (226)
Q Consensus 197 ~GL~VILRpGP 207 (226)
.++.|=-.-||
T Consensus 254 a~l~I~nDSGp 264 (322)
T PRK10964 254 AKAVVSVDTGL 264 (322)
T ss_pred CCEEEecCCcH
Confidence 66655554444
No 168
>PRK05660 HemN family oxidoreductase; Provisional
Probab=52.99 E-value=14 Score=34.65 Aligned_cols=48 Identities=23% Similarity=0.204 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCCEEEEeee-cC--cccCCCCeeeeeCcccHHHHHHHHHHcCCe
Q psy13824 150 EILRKIRSAGLNAVSTYVG-WS--SHEAQPGTYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 150 drL~kmKaaGlNTV~tyV~-Wn--lHEPe~G~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
+.|+.||++|+|.|+++|- =+ .+.--.+..++. +..+.++.|++.|+.
T Consensus 108 e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~---~~~~ai~~~~~~G~~ 158 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPD---EAKRAAKLAQGLGLR 158 (378)
T ss_pred HHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCC
Confidence 6777778888887777653 11 111111223333 566667777777764
No 169
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=52.88 E-value=45 Score=28.83 Aligned_cols=61 Identities=10% Similarity=0.037 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCcccCCCCee-eeeCcccHHHHHHHHHHcCCeEEEeeccccccccC
Q psy13824 148 WREILRKIRSAGLNAVSTYVGWSSHEAQPGTY-SFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSS 214 (226)
Q Consensus 148 W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~F-DFsG~~DLd~FI~lA~e~GL~VILRpGPYIcaesT 214 (226)
-.+.++.+.+.|++.|+.. ..+|..-.- +++ ..+++++-+.++++||.|.+ -|||....++
T Consensus 12 ~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~-h~p~~~nl~s 73 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSV-HAPYLINLAS 73 (273)
T ss_pred HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEE-ECCceecCCC
Confidence 3579999999999999983 344433210 222 22688999999999998654 4677533333
No 170
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=52.81 E-value=25 Score=30.72 Aligned_cols=64 Identities=13% Similarity=-0.020 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeec-CcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEee--ccccc
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGW-SSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYS--GFSWT 210 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~W-nlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRp--GPYIc 210 (226)
++.++.++.++++|.++|.+.-.. ...+..+-.++-. ...+.++.+.|+++|+.+.+-+ +|++.
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~A~~~Gv~l~lE~~~~~~~~ 160 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRF-REGLKEAVELAARAQVTLAVEIMDTPFMS 160 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHH-HHHHHHHHHHHHHcCCEEEEeeCCCchhc
Confidence 467889999999999999763110 0000000001100 1356788899999999999975 45543
No 171
>PLN02231 alanine transaminase
Probab=52.64 E-value=81 Score=31.20 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=42.4
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 142 RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 142 RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
..+.+..++.++..+.-|.++--+++. |-|.|.=-+++=+ .+++++++|+++|+.||.-
T Consensus 252 ~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls~e---~l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 252 GLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLAEE---NQRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCCHH---HHHHHHHHHHHcCCEEEEE
Confidence 556666777666666666665444444 6788877777776 8899999999999988753
No 172
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=52.60 E-value=26 Score=37.44 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=18.2
Q ss_pred ccHHHHHHHHHHcCCeEEEe
Q psy13824 185 RDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 185 ~DLd~FI~lA~e~GL~VILR 204 (226)
.++.++|+.|+++||.|||-
T Consensus 404 ~Efk~mV~alH~~Gi~VIlD 423 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMD 423 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEE
Confidence 47999999999999999985
No 173
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.49 E-value=4.1 Score=36.56 Aligned_cols=66 Identities=26% Similarity=0.278 Sum_probs=42.2
Q ss_pred eeEEeeccccCCCCC---HhHHHHHHHHHHHcCCCE--EEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 130 PFRFVSGEFHYFRSP---QERWREILRKIRSAGLNA--VSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 130 pf~ilgGeiHYfRvP---~e~W~drL~kmKaaGlNT--V~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
...+-+|--.|.|+. |-..++ -..++|.+. |.|.| .--.--|||-...+|++|.++|++|||.+-|
T Consensus 115 k~VVAaGYaDa~Rvgsv~Pl~~P~---vaa~ag~DvaMvDTai-----KDGkslFdfm~~e~l~eFvd~Ah~hGL~~Al 185 (235)
T COG1891 115 KKVVAAGYADAHRVGSVSPLLLPE---VAAEAGADVAMVDTAI-----KDGKSLFDFMDEEELEEFVDLAHEHGLEVAL 185 (235)
T ss_pred ceEEeccccchhhccCcCccccHH---HHHhcCCCEEEEeccc-----ccchhHHhhhcHHHHHHHHHHHHHcchHHHh
Confidence 344556665665542 333332 345678764 44422 2222368998888999999999999998765
No 174
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=52.29 E-value=29 Score=30.56 Aligned_cols=44 Identities=20% Similarity=0.453 Sum_probs=38.4
Q ss_pred HHHHHHHcCCCEEEEe-----eecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 151 ILRKIRSAGLNAVSTY-----VGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 151 rL~kmKaaGlNTV~ty-----V~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
+.+.+++.|+..|-+. |+|+-.+..| .+.+.++.++++|+.|++
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tp---------e~~~W~~e~k~~gi~v~v 67 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVPWDNPDATP---------ELRAWLAELKEAGIKVVV 67 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceecccCCCCCH---------HHHHHHHHHHhcCCEEEE
Confidence 4568899999988765 6899999888 899999999999999876
No 175
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=52.24 E-value=58 Score=22.52 Aligned_cols=44 Identities=18% Similarity=0.361 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 147 RWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 147 ~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
..++-++++++.|++.+-+- -|. ++. ...++.+.+++.|+.||.
T Consensus 16 ~~~~~~~~a~~~g~~~v~iT----Dh~------~~~---~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 16 SPEELVKRAKELGLKAIAIT----DHG------NLF---GAVEFYKAAKKAGIKPII 59 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEe----eCC------ccc---CHHHHHHHHHHcCCeEEE
Confidence 35788999999999998773 222 333 446788889999999875
No 176
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=52.08 E-value=48 Score=28.75 Aligned_cols=79 Identities=20% Similarity=0.163 Sum_probs=50.5
Q ss_pred eeeEEeeccccCC-CCCHhHHHHHHHHHHHcCCCEEEEeeecC------ccc--CCCCeeeeeCcccHHHHHHHHHHcCC
Q psy13824 129 RPFRFVSGEFHYF-RSPQERWREILRKIRSAGLNAVSTYVGWS------SHE--AQPGTYSFDGHRDVEYFMRLAAEEGL 199 (226)
Q Consensus 129 kpf~ilgGeiHYf-RvP~e~W~drL~kmKaaGlNTV~tyV~Wn------lHE--Pe~G~FDFsG~~DLd~FI~lA~e~GL 199 (226)
+-..+..|+-+.. +||.+.|.+.++++++.|.+.|-++-+=+ +.+ +.+...++.|..+|.+++.+.++.++
T Consensus 122 ~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l 201 (279)
T cd03789 122 PVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADL 201 (279)
T ss_pred CEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCE
Confidence 3344455555554 58899999999999988887775542200 001 12456788888888888877766666
Q ss_pred eEEEeecc
Q psy13824 200 YVLLYSGF 207 (226)
Q Consensus 200 ~VILRpGP 207 (226)
.|-..-||
T Consensus 202 ~I~~Dsg~ 209 (279)
T cd03789 202 VVTNDSGP 209 (279)
T ss_pred EEeeCCHH
Confidence 55554444
No 177
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=52.08 E-value=12 Score=34.76 Aligned_cols=23 Identities=39% Similarity=0.601 Sum_probs=13.5
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEE
Q psy13824 143 SPQERWREILRKIRSAGLNAVST 165 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~t 165 (226)
.+.+.|.+.++.++++|+.+-.+
T Consensus 185 ~~~~~~l~~i~~a~~~Gi~~~sg 207 (351)
T TIGR03700 185 ISAERWLEIHRTAHELGLKTNAT 207 (351)
T ss_pred CCHHHHHHHHHHHHHcCCCcceE
Confidence 34555666666666666665433
No 178
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=51.94 E-value=82 Score=27.78 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=20.5
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEee
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYV 167 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV 167 (226)
.++.|.+..++++++|+..|++.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~ 132 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNL 132 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEc
Confidence 568899999999999999998854
No 179
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=51.67 E-value=36 Score=34.56 Aligned_cols=52 Identities=10% Similarity=0.226 Sum_probs=42.7
Q ss_pred ccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeE
Q psy13824 138 FHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYV 201 (226)
Q Consensus 138 iHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~V 201 (226)
+-|.+.|.+..+.++++..++|+..+++....|-. ..+...++.|+++|+.+
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~ 140 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHA 140 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeE
Confidence 44667788889999999999999999998766653 26778888898888875
No 180
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=51.37 E-value=51 Score=30.72 Aligned_cols=59 Identities=14% Similarity=0.208 Sum_probs=46.2
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeee----cCcccC------C------CCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 143 SPQERWREILRKIRSAGLNAVSTYVG----WSSHEA------Q------PGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~tyV~----WnlHEP------e------~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
.|.+..++.++.|-...+|++..++- |.+--+ + .|.|.-+ |+.++++-|++.|+.||.-
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~---di~eiv~yA~~rgI~vIPE 89 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPE---DVKEIVEYARLRGIRVIPE 89 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHH---HHHHHHHHHHHcCCEEEEe
Confidence 46899999999999999999998853 544321 1 2334444 9999999999999999975
No 181
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=51.34 E-value=23 Score=30.85 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=39.0
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecccc
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSW 209 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYI 209 (226)
.+..++.++.++++|.++|.+........+.+..+.-. ...+.++.+.|+++|+.+.+-+-++.
T Consensus 84 ~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gi~l~lEn~~~~ 147 (279)
T cd00019 84 IERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRV-IEALNELIDKAETKGVVIALETMAGQ 147 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHH-HHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 45678889999999999876633221101111111100 13567778888889999888765443
No 182
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=51.30 E-value=31 Score=35.96 Aligned_cols=54 Identities=9% Similarity=0.134 Sum_probs=38.0
Q ss_pred HHHHHHcCCCEEEEe-ee-----cC--cccCCCCeeeeeC---------cccHHHHHHHHHHcCCeEEEee
Q psy13824 152 LRKIRSAGLNAVSTY-VG-----WS--SHEAQPGTYSFDG---------HRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 152 L~kmKaaGlNTV~ty-V~-----Wn--lHEPe~G~FDFsG---------~~DLd~FI~lA~e~GL~VILRp 205 (226)
++.++++|++.|-+. ++ |. +.-...|-||-+. ..|++++++.|+++|++||+-.
T Consensus 80 wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~Dl 150 (688)
T TIGR02455 80 WKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDI 150 (688)
T ss_pred HHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 357889999998764 21 32 2222356676433 3689999999999999999753
No 183
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=50.46 E-value=44 Score=27.85 Aligned_cols=55 Identities=27% Similarity=0.273 Sum_probs=36.0
Q ss_pred HhHHHHHHHHHH-HcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeec
Q psy13824 145 QERWREILRKIR-SAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSG 206 (226)
Q Consensus 145 ~e~W~drL~kmK-aaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpG 206 (226)
.+...+.+++.. +.|+--|..+- ..+.++..+....+.+.+.|+++|+-|++-+|
T Consensus 83 ~~~~~~~l~~~~~~~g~~Gv~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 83 PEDAVEELERALQELGFRGVKLHP-------DLGGFDPDDPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp HHHHHHHHHHHHHTTTESEEEEES-------SETTCCTTSGHCHHHHHHHHHHHT-EEEEEES
T ss_pred chhHHHHHHHhccccceeeeEecC-------CCCccccccHHHHHHHHHHHHhhccceeeecc
Confidence 344555555544 99999988743 23333333333336999999999999999877
No 184
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=50.42 E-value=1.5e+02 Score=28.19 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=52.7
Q ss_pred eEEECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeC--cccHHHHHHHHHHcCCe
Q psy13824 123 TFRMDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDG--HRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 123 ~F~ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG--~~DLd~FI~lA~e~GL~ 200 (226)
.+.++|...++++|.--- -..+.-.+..+.+|+.|+..++-+.+= |+.--|.|.| ...+..+-+.+++.||.
T Consensus 111 ~~~~g~~~~~~iaGpc~i--E~~~~~~~~A~~lk~~g~~~~r~~~~k----pRtsp~~f~g~~~e~l~~L~~~~~~~Gl~ 184 (360)
T PRK12595 111 GEVIGDGNQSFIFGPCSV--ESYEQVEAVAKALKAKGLKLLRGGAFK----PRTSPYDFQGLGVEGLKILKQVADEYGLA 184 (360)
T ss_pred CEEecCCCeeeEEecccc--cCHHHHHHHHHHHHHcCCcEEEccccC----CCCCCccccCCCHHHHHHHHHHHHHcCCC
Confidence 366665544445564111 136778888899999999999975443 5555567775 35788889999999999
Q ss_pred EEEe
Q psy13824 201 VLLY 204 (226)
Q Consensus 201 VILR 204 (226)
++-.
T Consensus 185 ~~t~ 188 (360)
T PRK12595 185 VISE 188 (360)
T ss_pred EEEe
Confidence 8864
No 185
>PRK14567 triosephosphate isomerase; Provisional
Probab=50.40 E-value=34 Score=31.23 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=36.9
Q ss_pred HHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccc
Q psy13824 151 ILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFS 208 (226)
Q Consensus 151 rL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPY 208 (226)
...++|++|++.|-+ -|--++-.|.=+ +..+.+=++.|.++||.+|++.|=-
T Consensus 77 S~~mLkd~G~~yvii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pI~CiGEt 128 (253)
T PRK14567 77 SARMLEDIGCDYLLI-----GHSERRSLFAES-DEDVFKKLNKIIDTTITPVVCIGES 128 (253)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCccCCC-HHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 346889999999998 444444444322 2345567778999999999998853
No 186
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=50.29 E-value=31 Score=32.22 Aligned_cols=58 Identities=22% Similarity=0.338 Sum_probs=45.9
Q ss_pred EECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcC
Q psy13824 125 RMDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEG 198 (226)
Q Consensus 125 ~ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~G 198 (226)
.+.|++++.++|--++ +.-++.++++|++.+.+..| |..+.|+ ..|++.+.+.|++.|
T Consensus 224 ~l~~~~v~a~sGIg~P--------~~F~~~L~~~G~~~~~~~~f-------~DHh~yt-~~dl~~l~~~a~~~~ 281 (326)
T PF02606_consen 224 PLKGKPVLAFSGIGNP--------ERFFDTLESLGIEVVGTLAF-------PDHHRYT-EQDLEKLEAEAKAAG 281 (326)
T ss_pred hccCCeeEEEEEcCCh--------HHHHHHHHHcCCeEEEeeEC-------CCCCCCC-HHHHHHHHHhhcccc
Confidence 4789999999999998 66677788899999987555 4444554 348899999998888
No 187
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=50.23 E-value=50 Score=29.82 Aligned_cols=75 Identities=21% Similarity=0.261 Sum_probs=51.7
Q ss_pred eEEECCeeeEEeeccccCCCC-CHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeee--CcccHHHHHHHHHHcCC
Q psy13824 123 TFRMDGRPFRFVSGEFHYFRS-PQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFD--GHRDVEYFMRLAAEEGL 199 (226)
Q Consensus 123 ~F~ldGkpf~ilgGeiHYfRv-P~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFs--G~~DLd~FI~lA~e~GL 199 (226)
++.++|..+++++| +-.+ ..+.-.+..+.+|+.|.+..+.|++=+... -+.|. |..-|+.+-+.+++.||
T Consensus 18 ~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRts----p~s~~g~g~~gl~~l~~~~~~~Gl 90 (260)
T TIGR01361 18 GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTS----PYSFQGLGEEGLKLLRRAADEHGL 90 (260)
T ss_pred CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCC----CccccccHHHHHHHHHHHHHHhCC
Confidence 35666555666777 3233 367778888999999999877766543322 24455 35678888889999999
Q ss_pred eEEEe
Q psy13824 200 YVLLY 204 (226)
Q Consensus 200 ~VILR 204 (226)
.++-.
T Consensus 91 ~~~t~ 95 (260)
T TIGR01361 91 PVVTE 95 (260)
T ss_pred CEEEe
Confidence 98764
No 188
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=50.21 E-value=27 Score=29.94 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=38.5
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCccc-CCCCeeeeeCcccHHHHHHHHHHcCCeEEEee
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHE-AQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHE-Pe~G~FDFsG~~DLd~FI~lA~e~GL~VILRp 205 (226)
.+.+++.++.++++|..+|++..-..--+ +.+-.++- -...+.++.+.|++.|+.+.+-|
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~-~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARAT-LVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHH-HHHHHHHHHHHHHhcCCEEEEEE
Confidence 36788889999999999997632211000 00000000 01357888899999999999987
No 189
>PRK15108 biotin synthase; Provisional
Probab=50.03 E-value=67 Score=29.98 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=44.3
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 142 RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 142 RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
-.+++...+..+.+++.|+..+....-|. +| -.-+|+ .+.++++.+++.|+.+++-.|+
T Consensus 75 ~ls~eEI~~~a~~~~~~G~~~i~i~~~g~--~p--~~~~~e---~i~~~i~~ik~~~i~v~~s~G~ 133 (345)
T PRK15108 75 LMEVEQVLESARKAKAAGSTRFCMGAAWK--NP--HERDMP---YLEQMVQGVKAMGLETCMTLGT 133 (345)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEecCC--CC--CcchHH---HHHHHHHHHHhCCCEEEEeCCc
Confidence 36788888888889999999997766673 33 223455 6778888888899988887663
No 190
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=49.62 E-value=35 Score=26.83 Aligned_cols=47 Identities=32% Similarity=0.200 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcc-cCCCCeeeeeCcccHHHHHHHHHHcCCe
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSH-EAQPGTYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlH-EPe~G~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
.+...+.+++++++|.-.|.+++.-++. +. . .++.++++.+++.|..
T Consensus 135 ~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~------~---~~~~~~~~~~~~~~~~ 182 (216)
T smart00729 135 VEDVLEAVEKLREAGPIKVSTDLIVGLPGET------E---EDFEETLKLLKELGPD 182 (216)
T ss_pred HHHHHHHHHHHHHhCCcceEEeEEecCCCCC------H---HHHHHHHHHHHHcCCC
Confidence 4555556666666663233333333332 11 1 2556666666666665
No 191
>PRK10426 alpha-glucosidase; Provisional
Probab=49.46 E-value=61 Score=33.00 Aligned_cols=68 Identities=21% Similarity=0.330 Sum_probs=48.1
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEee-ecCcccCC-CC-----eeeeeC--cccHHHHHHHHHHcCCeEEEeecccccc
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYV-GWSSHEAQ-PG-----TYSFDG--HRDVEYFMRLAAEEGLYVLLYSGFSWTM 211 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV-~WnlHEPe-~G-----~FDFsG--~~DLd~FI~lA~e~GL~VILRpGPYIca 211 (226)
..+...+.++++++.|+..=.+.+ .|.-.... =| .|.|+- .-|.+++|+..++.|++|++..=|+|+.
T Consensus 219 ~~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~ 295 (635)
T PRK10426 219 GTEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLAS 295 (635)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCC
Confidence 356788999999999986544444 47533221 11 233332 2388999999999999999999999984
No 192
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=49.20 E-value=35 Score=31.33 Aligned_cols=74 Identities=14% Similarity=0.051 Sum_probs=45.1
Q ss_pred eeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecccc
Q psy13824 130 PFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSW 209 (226)
Q Consensus 130 pf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYI 209 (226)
++.+.+=.+|+...-.-.=+-...++|++|++.|-+ -|.-++-.|+=+ +..+.+=++.|.++||.+|||.|=.-
T Consensus 59 ~i~~gAQn~~~~~~GA~TGeiS~~mL~d~G~~~vii-----GHSERR~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvGEtl 132 (251)
T COG0149 59 NIKVGAQNVDPEDSGAFTGEISAEMLKDLGAKYVLI-----GHSERRLYFGET-DELIAKKVKAAKEAGLTPILCVGETL 132 (251)
T ss_pred CceEEeccCCcccCCCccCcCCHHHHHHcCCCEEEE-----Cccccccccccc-hHHHHHHHHHHHHCCCeEEEEcCCCH
Confidence 444444445553222222233456889999999998 343333333333 12345778899999999999988544
No 193
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=49.12 E-value=23 Score=29.82 Aligned_cols=78 Identities=18% Similarity=0.347 Sum_probs=46.4
Q ss_pred CCeee-EEeecccc-CCCCCHhHHHHHHHHHHHcCCCEEEEeeecCccc--------CCCC----eeeeeCcccHHHHHH
Q psy13824 127 DGRPF-RFVSGEFH-YFRSPQERWREILRKIRSAGLNAVSTYVGWSSHE--------AQPG----TYSFDGHRDVEYFMR 192 (226)
Q Consensus 127 dGkpf-~ilgGeiH-YfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHE--------Pe~G----~FDFsG~~DLd~FI~ 192 (226)
.++++ .+.-|.-+ .=+||.++|.+.++++++-| ..+.+.|.-.| -.++ ..++.|..+|.+++.
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~a 179 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAA 179 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHH
Confidence 34443 33333333 33799999999999999998 44556676655 1122 688989889998887
Q ss_pred HHHHcCCeEEEeecc
Q psy13824 193 LAAEEGLYVLLYSGF 207 (226)
Q Consensus 193 lA~e~GL~VILRpGP 207 (226)
+.+..++.|-.--||
T Consensus 180 li~~a~~~I~~Dtg~ 194 (247)
T PF01075_consen 180 LISRADLVIGNDTGP 194 (247)
T ss_dssp HHHTSSEEEEESSHH
T ss_pred HHhcCCEEEecCChH
Confidence 777776665554443
No 194
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=49.08 E-value=1.1e+02 Score=29.20 Aligned_cols=61 Identities=7% Similarity=0.117 Sum_probs=47.7
Q ss_pred CCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 140 YFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 140 YfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
.+....+..++.++..++-|.++=-+++. |-|.|.=-.|+=+ .++++++.|+++|+++|.-
T Consensus 179 ~f~~~~~~le~a~~~a~~~~~~vk~lll~-nP~NPtG~~~s~e---~l~~l~~~~~~~~i~lI~D 239 (447)
T PLN02607 179 NFQVTPQALEAAYQEAEAANIRVRGVLIT-NPSNPLGATVQRS---VLEDILDFVVRKNIHLVSD 239 (447)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCeeEEEEe-CCCCCcCcccCHH---HHHHHHHHHHHCCCEEEEe
Confidence 34667888888888888888875444443 6688877777766 8999999999999999864
No 195
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=48.87 E-value=33 Score=35.36 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=44.5
Q ss_pred CCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHH----HHHHHcCCeEE
Q psy13824 127 DGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFM----RLAAEEGLYVL 202 (226)
Q Consensus 127 dGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI----~lA~e~GL~VI 202 (226)
.|.++.+.+=.+|+...-.-.=+=...++|++|++.|-+ -|--++..|.=+ |+.+ +.|.++||.+|
T Consensus 449 ~~~~i~vgAQnv~~~~~GA~TGEVSa~mLkd~G~~~vii-----GHSERR~~f~Et-----d~~V~~K~~~al~~GL~pI 518 (645)
T PRK13962 449 DGSNIKLGAQNVFYEEKGAYTGEISGPMLAEIGVEYVII-----GHSERRQYFGET-----DELVNKKVLAALKAGLTPI 518 (645)
T ss_pred cCCCeEEEcccccccccCCccCcCCHHHHHHcCCCEEEE-----CcccccCCcCcc-----hHHHHHHHHHHHHCCCEEE
Confidence 444444333334543221222344567899999999999 454445444433 4555 89999999999
Q ss_pred Eeecc
Q psy13824 203 LYSGF 207 (226)
Q Consensus 203 LRpGP 207 (226)
+|.|=
T Consensus 519 vCVGE 523 (645)
T PRK13962 519 LCVGE 523 (645)
T ss_pred EEcCC
Confidence 99884
No 196
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=48.66 E-value=37 Score=31.53 Aligned_cols=62 Identities=21% Similarity=0.261 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccccccccCCCCcccccccc
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSWDGTCIGFLWT 225 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIcaesT~~g~~PaWL~~ 225 (226)
+.--..|+.+|++|.+||-- ..|- + -.+|...+.+++++-|+.||..-|=|+.. +-|.|+.+
T Consensus 38 ~~~~~El~~~k~~Gg~tiVd--------~T~~--g--~GRd~~~l~~is~~tGv~II~~TG~y~~~------~~p~~~~~ 99 (308)
T PF02126_consen 38 EAAVAELKEFKAAGGRTIVD--------ATPI--G--LGRDVEALREISRRTGVNIIASTGFYKEP------FYPEWVRE 99 (308)
T ss_dssp HHHHHHHHHHHHTTEEEEEE----------SG--G--GTB-HHHHHHHHHHHT-EEEEEEEE-SGG------CSCHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEEe--------cCCc--c--cCcCHHHHHHHHHHhCCeEEEeCCCCccc------cCChhhhc
Confidence 44556899999999988643 3331 1 13599999999999999999999999852 24677643
No 197
>PRK08508 biotin synthase; Provisional
Probab=48.65 E-value=29 Score=31.24 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=22.4
Q ss_pred HhHHHHHHH---HHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCe
Q psy13824 145 QERWREILR---KIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 145 ~e~W~drL~---kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
...|+++++ .+|++|+.+-+ .+.-.+-|..+ |+.+.+..+++.+-.
T Consensus 133 ~~~~~~~l~~i~~a~~~Gi~v~s-g~I~GlGEt~e---------d~~~~l~~lr~L~~~ 181 (279)
T PRK08508 133 THTWEERFQTCENAKEAGLGLCS-GGIFGLGESWE---------DRISFLKSLASLSPH 181 (279)
T ss_pred CCCHHHHHHHHHHHHHcCCeecc-eeEEecCCCHH---------HHHHHHHHHHcCCCC
Confidence 345666444 35566653333 33333344333 555555555666555
No 198
>PLN02692 alpha-galactosidase
Probab=48.42 E-value=2.4e+02 Score=27.74 Aligned_cols=75 Identities=12% Similarity=0.164 Sum_probs=50.7
Q ss_pred ccCCCCCHhHHHHHHHHH-----HHcCCCEEEEeeecCcccC-CCCeeeeeCc---ccHHHHHHHHHHcCCe--EEEeec
Q psy13824 138 FHYFRSPQERWREILRKI-----RSAGLNAVSTYVGWSSHEA-QPGTYSFDGH---RDVEYFMRLAAEEGLY--VLLYSG 206 (226)
Q Consensus 138 iHYfRvP~e~W~drL~km-----KaaGlNTV~tyV~WnlHEP-e~G~FDFsG~---~DLd~FI~lA~e~GL~--VILRpG 206 (226)
..+..+..+...+..+.| |++|.+.|.+.--|...+. +.|.+--+-. .-+.++.+.+++.||+ +-.-+|
T Consensus 65 ~~~~~i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKfGIy~d~G 144 (412)
T PLN02692 65 HFSCKIDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKLGIYSDAG 144 (412)
T ss_pred hhCcccCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCceEEEecCC
Confidence 334456777777777755 7789999999888965432 2343322110 2488999999999999 456777
Q ss_pred cccccc
Q psy13824 207 FSWTMK 212 (226)
Q Consensus 207 PYIcae 212 (226)
.+.|+.
T Consensus 145 ~~tC~~ 150 (412)
T PLN02692 145 YFTCSK 150 (412)
T ss_pred ccccCC
Confidence 777753
No 199
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=48.34 E-value=56 Score=31.80 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=45.0
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeee----cCccc-----------------------------------CCCCeeeeeC
Q psy13824 143 SPQERWREILRKIRSAGLNAVSTYVG----WSSHE-----------------------------------AQPGTYSFDG 183 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~tyV~----WnlHE-----------------------------------Pe~G~FDFsG 183 (226)
.|.+..++.++.|-...+|++..++- |-+-= +..|.|.=
T Consensus 19 ~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~-- 96 (445)
T cd06569 19 HSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSR-- 96 (445)
T ss_pred CCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCH--
Confidence 37899999999999999999999862 53210 11123333
Q ss_pred cccHHHHHHHHHHcCCeEEEe
Q psy13824 184 HRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 184 ~~DLd~FI~lA~e~GL~VILR 204 (226)
.|+.++++-|++.|+.||.-
T Consensus 97 -~di~eiv~yA~~rgI~VIPE 116 (445)
T cd06569 97 -ADYIEILKYAKARHIEVIPE 116 (445)
T ss_pred -HHHHHHHHHHHHcCCEEEEc
Confidence 49999999999999999864
No 200
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=48.31 E-value=20 Score=33.87 Aligned_cols=70 Identities=17% Similarity=0.021 Sum_probs=49.1
Q ss_pred cccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCC-CCeeeeeCcccHHHHHHHHHHcCCeEEEeeccccc
Q psy13824 137 EFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQ-PGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWT 210 (226)
Q Consensus 137 eiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe-~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIc 210 (226)
+-++ |.|...-.-..+.++++|-+.|-+.++|.-.++. --.-.. .+|.++.+.|++.||-+++-+=+|--
T Consensus 98 t~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~---~~l~rv~~ec~~~giPlllE~l~y~~ 168 (340)
T PRK12858 98 TAPG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKH---AFVERVGAECRANDIPFFLEPLTYDG 168 (340)
T ss_pred CCCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHH---HHHHHHHHHHHHcCCceEEEEeccCC
Confidence 4455 6665554445778999999999999999955331 011122 37899999999999999886544443
No 201
>PRK15447 putative protease; Provisional
Probab=47.91 E-value=38 Score=30.99 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=42.0
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEeee-cCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 142 RSPQERWREILRKIRSAGLNAVSTYVG-WSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 142 RvP~e~W~drL~kmKaaGlNTV~tyV~-WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
-||.+.-++-...+++.|.+.|-.+.. -+..- .|..+ ++.+.++.|+++|.+|.+
T Consensus 11 ~~p~~~~~~~~~~~~~~gaDaVY~g~~~~~~R~----~f~~~---~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 11 YWPKETVRDFYQRAADSPVDIVYLGETVCSKRR----ELKVG---DWLELAERLAAAGKEVVL 66 (301)
T ss_pred CCCCCCHHHHHHHHHcCCCCEEEECCccCCCcc----CCCHH---HHHHHHHHHHHcCCEEEE
Confidence 789889999999999999998888742 12211 24334 889999999999999877
No 202
>PRK06256 biotin synthase; Validated
Probab=47.73 E-value=18 Score=32.75 Aligned_cols=16 Identities=19% Similarity=0.443 Sum_probs=7.4
Q ss_pred HHHHHHHHcCCCEEEE
Q psy13824 150 EILRKIRSAGLNAVST 165 (226)
Q Consensus 150 drL~kmKaaGlNTV~t 165 (226)
+.+++||++|++.+..
T Consensus 153 e~l~~LkeaG~~~v~~ 168 (336)
T PRK06256 153 EQAERLKEAGVDRYNH 168 (336)
T ss_pred HHHHHHHHhCCCEEec
Confidence 3444455555544433
No 203
>PTZ00377 alanine aminotransferase; Provisional
Probab=46.92 E-value=1.3e+02 Score=28.71 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=39.7
Q ss_pred CCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 141 FRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 141 fRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
+..+.+..++.+...++-|-++--+++. |-|.|.=-.++=+ .++++++.|+++|++||.-
T Consensus 198 ~~~d~~~l~~~l~~~~~~~~~~k~l~l~-~P~NPTG~~~s~e---~~~~i~~~a~~~~~~iI~D 257 (481)
T PTZ00377 198 WSLDQEELEEAYEQAVRNGITPRALVVI-NPGNPTGQVLTRD---VMEEIIKFCYEKGIVLMAD 257 (481)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEEE-CCCCCCCcCCCHH---HHHHHHHHHHHCCCEEEEe
Confidence 3455666666665554444444334444 6677777677666 7888889998888887753
No 204
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.77 E-value=91 Score=21.23 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHcCCCEEEEeee-cCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEE
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVG-WSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~-WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VI 202 (226)
....+.++.+.+.|+|-..++.. ..-.+...-.+..++ .+.+.+++..++.|..|+
T Consensus 13 G~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 13 GQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeee
Confidence 45677888999999999988753 111111112445544 466799999999998654
No 205
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=46.47 E-value=30 Score=26.65 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcc---cCCC-CeeeeeCcccHHHHHHHHHHcCCeEE
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSH---EAQP-GTYSFDGHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlH---EPe~-G~FDFsG~~DLd~FI~lA~e~GL~VI 202 (226)
++.+++|+++|+..|.+.+.-.-. +... +..+++ +..+.++.+.++|+.|.
T Consensus 88 ~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~ 142 (204)
T cd01335 88 EELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFK---ERLEALKELREAGLGLS 142 (204)
T ss_pred HHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHH---HHHHHHHHHHHcCCCce
Confidence 567778888899888887652211 1111 444555 66677777877777754
No 206
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.32 E-value=83 Score=20.67 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=38.6
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCe----eeee--CcccHHHHHHHHHHcCCeEE
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGT----YSFD--GHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~----FDFs--G~~DLd~FI~lA~e~GL~VI 202 (226)
|....+.++.+.+.|+|...+...=...+-.+|. +.++ +..+++.+++..++.|..|.
T Consensus 9 ~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 9 PGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred CChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 5667899999999999998775321111101343 3332 23577899999999998763
No 207
>KOG0259|consensus
Probab=45.50 E-value=28 Score=34.43 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=49.8
Q ss_pred CCCHhHHHHHHHHHHHc-CCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 142 RSPQERWREILRKIRSA-GLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 142 RvP~e~W~drL~kmKaa-GlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
-.|.+.|+-||.-++++ -=||+.+-| =|=+.|-=++|+-. .|.+++++|+++|+-||-
T Consensus 179 lLPe~~weIDL~~veal~DENT~Aivv-iNP~NPcGnVys~~---HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 179 LLPEKDWEIDLDGVEALADENTVAIVV-INPNNPCGNVYSED---HLKKIAETAKKLGIMVIA 237 (447)
T ss_pred ccCcccceechHHHHHhhccCeeEEEE-eCCCCCCcccccHH---HHHHHHHHHHHhCCeEEe
Confidence 36888999999999995 458888754 47788888999998 999999999999999885
No 208
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=45.30 E-value=56 Score=29.31 Aligned_cols=67 Identities=16% Similarity=0.005 Sum_probs=44.4
Q ss_pred EEeeccccCCCCC----HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCe--EEEee
Q psy13824 132 RFVSGEFHYFRSP----QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLY--VLLYS 205 (226)
Q Consensus 132 ~ilgGeiHYfRvP----~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~--VILRp 205 (226)
+-+|+..|+++-| .+.=-++|++-.++|.+.+.| .=.||.+ .+.+|++.+++.|+. |++..
T Consensus 126 f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iT----------Q~~fd~~---~~~~~~~~~~~~gi~~PIi~Gi 192 (272)
T TIGR00676 126 FDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAIT----------QLFFDND---DYYRFVDRCRAAGIDVPIIPGI 192 (272)
T ss_pred eeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEee----------ccccCHH---HHHHHHHHHHHcCCCCCEeccc
Confidence 5677777665433 322334566666799998888 3356666 888999999999766 45554
Q ss_pred cccccc
Q psy13824 206 GFSWTM 211 (226)
Q Consensus 206 GPYIca 211 (226)
-|....
T Consensus 193 ~p~~s~ 198 (272)
T TIGR00676 193 MPITNF 198 (272)
T ss_pred CCcCCH
Confidence 455543
No 209
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=45.18 E-value=41 Score=30.64 Aligned_cols=81 Identities=12% Similarity=-0.040 Sum_probs=48.6
Q ss_pred EEeeccccCCCCC-HhHHH---HHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCe--EEEee
Q psy13824 132 RFVSGEFHYFRSP-QERWR---EILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLY--VLLYS 205 (226)
Q Consensus 132 ~ilgGeiHYfRvP-~e~W~---drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~--VILRp 205 (226)
+-+|+..|++.-| .+..+ ++|++-.++|.+.+.| .=.||.+ .+.+|++.+++.|+. ||..+
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iT----------Q~~Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIIT----------QLFYDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeec----------cceecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 3467777765433 12223 3444433699999888 3356666 888999999998766 55555
Q ss_pred ccccccc------cCCCCcccccccc
Q psy13824 206 GFSWTMK------SSWDGTCIGFLWT 225 (226)
Q Consensus 206 GPYIcae------sT~~g~~PaWL~~ 225 (226)
-|..+.. .-.+...|.|+.+
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~ 222 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMS 222 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHH
Confidence 5543322 1234466777643
No 210
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=44.81 E-value=31 Score=30.03 Aligned_cols=61 Identities=11% Similarity=-0.024 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEeee-cCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVG-WSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~-WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
+..++.++.++++|...|.+.-. +....+.+..++.. ...+.++.+.|+++|+.+.+-+.+
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~A~~~GV~i~iE~~~ 160 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRF-IDGLKESVELASRASVTLAFEIMD 160 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHH-HHHHHHHHHHHHHhCCEEEEeecC
Confidence 45778889999999999976310 00000001111110 125788899999999999997653
No 211
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=44.54 E-value=28 Score=34.54 Aligned_cols=64 Identities=14% Similarity=0.059 Sum_probs=46.6
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcC--------------CeEEEeecc
Q psy13824 142 RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEG--------------LYVLLYSGF 207 (226)
Q Consensus 142 RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~G--------------L~VILRpGP 207 (226)
+.|.+..+-.+..+++.|.+.+-+||-=+..+ .. ..+.+.|+.|.+.| +.|..-+|-
T Consensus 131 ~~Ph~vieG~~iaa~avgA~~~~IyIr~ey~~------~~---~~l~~Ai~ea~~~g~lG~nilg~~~~~~I~V~~g~g~ 201 (461)
T PLN03132 131 HDPHKLLEGCLIAGVGMRARAAYIYIRGEYVN------ER---LNLERARHEAYAAGLLGKNACGSGYDFDVYIHYGAGA 201 (461)
T ss_pred HCHHHHHHHHHHHHHHhCCCEEEEEEccCCHH------HH---HHHHHHHHHHHHcCCccccccCCCCCceEEEEECCCc
Confidence 34566677788889999999999998433321 11 15666688887765 678888999
Q ss_pred ccccccC
Q psy13824 208 SWTMKSS 214 (226)
Q Consensus 208 YIcaesT 214 (226)
|||||-|
T Consensus 202 Y~~GeEt 208 (461)
T PLN03132 202 YICGEET 208 (461)
T ss_pred CcCCHHH
Confidence 9998765
No 212
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=44.35 E-value=26 Score=33.41 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCCEEEEeee-c---CcccCCCCeeeeeCcccHHHHHHHHHHcCCeE
Q psy13824 149 REILRKIRSAGLNAVSTYVG-W---SSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYV 201 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~-W---nlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~V 201 (226)
++.|+.||++|+|.|+++|- = .++.-..+ .+++ ++.+.++.+++.|+.+
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~-~~~~---~~~~ai~~l~~~g~~~ 193 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSELHALHRP-QKRA---DVHQALEWIRAAGFPI 193 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHhCCC-CCHH---HHHHHHHHHHHcCCCe
Confidence 46778888888888888763 2 11111222 2444 7778888888888764
No 213
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=44.19 E-value=41 Score=29.78 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=43.1
Q ss_pred CCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 140 YFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 140 YfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
.+..+.+..++.+++.++-+..+.-+++. +-|.|.=..++-+ ++.++++.|+++|++||.-
T Consensus 127 ~~~~d~~~l~~~l~~~~~~~~~~~~v~~~-~p~nPtG~~~~~~---~l~~l~~~~~~~~~~ii~D 187 (363)
T PF00155_consen 127 DFHLDPEALEEALDELPSKGPRPKAVLIC-NPNNPTGSVLSLE---ELRELAELAREYNIIIIVD 187 (363)
T ss_dssp TTEETHHHHHHHHHTSHTTTETEEEEEEE-SSBTTTTBB--HH---HHHHHHHHHHHTTSEEEEE
T ss_pred cccccccccccccccccccccccceeeec-ccccccccccccc---cccchhhhhcccccceeee
Confidence 33566788888888887777644444444 6677776677776 8888999999999998874
No 214
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=44.01 E-value=48 Score=29.23 Aligned_cols=69 Identities=25% Similarity=0.267 Sum_probs=41.9
Q ss_pred eccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcc--------------cCCCCeee--eeCcccHHHHHHHHHHcC
Q psy13824 135 SGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSH--------------EAQPGTYS--FDGHRDVEYFMRLAAEEG 198 (226)
Q Consensus 135 gGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlH--------------EPe~G~FD--FsG~~DLd~FI~lA~e~G 198 (226)
+|++.|....-+...++++.+|++|.+-+-.++.=.-. ++-|-.|. |+--.|.++-++.+.+.|
T Consensus 61 ~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG 140 (201)
T PF03932_consen 61 GGDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELG 140 (201)
T ss_dssp SS-S---HHHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT
T ss_pred CCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcC
Confidence 68888877778889999999999999987776531111 23333332 333456777777777888
Q ss_pred CeEEE
Q psy13824 199 LYVLL 203 (226)
Q Consensus 199 L~VIL 203 (226)
+.=||
T Consensus 141 ~~rVL 145 (201)
T PF03932_consen 141 FDRVL 145 (201)
T ss_dssp -SEEE
T ss_pred CCEEE
Confidence 88777
No 215
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=43.61 E-value=80 Score=26.06 Aligned_cols=46 Identities=17% Similarity=0.092 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe-eccc
Q psy13824 150 EILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY-SGFS 208 (226)
Q Consensus 150 drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR-pGPY 208 (226)
..++.+.++|.+.+.+. .|+. ...++++++.++++|+.+++- +||.
T Consensus 68 ~~~~~~~~aGad~i~~h-----~~~~--------~~~~~~~i~~~~~~g~~~~v~~~~~~ 114 (202)
T cd04726 68 LEAEMAFKAGADIVTVL-----GAAP--------LSTIKKAVKAAKKYGKEVQVDLIGVE 114 (202)
T ss_pred HHHHHHHhcCCCEEEEE-----eeCC--------HHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 34588899999999984 2331 125788999999999998864 6665
No 216
>PRK12677 xylose isomerase; Provisional
Probab=43.42 E-value=45 Score=31.81 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeee---CcccHHHHHHHHHHcCCeEE-Eee
Q psy13824 147 RWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFD---GHRDVEYFMRLAAEEGLYVL-LYS 205 (226)
Q Consensus 147 ~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFs---G~~DLd~FI~lA~e~GL~VI-LRp 205 (226)
.+++.+++++++|+..|+.. .+..--|+.+ -...++++.+++++.||.|. +.|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~ 88 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTT 88 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEec
Confidence 46899999999999999873 1111112221 11248899999999999976 443
No 217
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=43.26 E-value=30 Score=32.00 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCCEEEEeee-cCcc-cCCCC-eeeeeCcccHHHHHHHHHHcCCe
Q psy13824 149 REILRKIRSAGLNAVSTYVG-WSSH-EAQPG-TYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~-WnlH-EPe~G-~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
++.++.+|++|+|.|+++|- -+-. -..-| ..+++ ++.+.++.+++.|+.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~---~~~~ai~~lr~~g~~ 149 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQK---QIIKAIENAKKAGFE 149 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHH---HHHHHHHHHHHcCCC
Confidence 47788889999998888773 3211 11113 24455 777888888888875
No 218
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=43.26 E-value=16 Score=33.29 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=27.6
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCC
Q psy13824 142 RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGL 199 (226)
Q Consensus 142 RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL 199 (226)
..+.+.|.+.++.+|++|+.+....++- +-|..+ |+.+.++.+++.+.
T Consensus 177 ~~s~~~~l~~i~~a~~~Gi~v~~~~iiG-lgEt~e---------d~~~~l~~l~~l~~ 224 (340)
T TIGR03699 177 KISSEEWLEVMETAHKLGLPTTATMMFG-HVETLE---------DRIEHLERIRELQD 224 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCCccceeEee-CCCCHH---------HHHHHHHHHHHhch
Confidence 3456667777777788888755444444 344333 44445555555543
No 219
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=42.60 E-value=57 Score=30.22 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=28.7
Q ss_pred cCCeEEECCeeeEEeeccccCCCCC-HhHHHHHH-HHHHHcCCCEEEEee
Q psy13824 120 SANTFRMDGRPFRFVSGEFHYFRSP-QERWREIL-RKIRSAGLNAVSTYV 167 (226)
Q Consensus 120 ~~~~F~ldGkpf~ilgGeiHYfRvP-~e~W~drL-~kmKaaGlNTV~tyV 167 (226)
|.+.+.|||||++++=.. ...| ...+-+.+ +.+|++|++-+-.-.
T Consensus 150 D~rYikVdGKPv~~Iy~p---~~~pd~~~~~~~wr~~a~~~G~~giyii~ 196 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLIYRP---GDIPDIKEMIERWREEAKEAGLPGIYIIA 196 (345)
T ss_pred CCCceeECCEEEEEEECc---ccccCHHHHHHHHHHHHHHcCCCceEEEE
Confidence 457899999997766333 2233 34444445 566889999665543
No 220
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=42.53 E-value=16 Score=32.75 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
+=...++|++|++.|-+ -|--++-.|. +.+.++.+=++.|.++||.+|++.|=
T Consensus 74 evS~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~i~~Kv~~al~~gl~pIvCvGE 126 (244)
T PF00121_consen 74 EVSAEMLKDLGCKYVII-----GHSERRQYFG-ETDEIINKKVKAALENGLTPIVCVGE 126 (244)
T ss_dssp HHBHHHHHHTTESEEEE-----SCHHHHHHST--BHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HhHHHHHHHhhCCEEEe-----ccccccCccc-cccHHHHHHHHHHHHCCCEEEEEecc
Confidence 44557899999999999 3333332333 23457888899999999999999885
No 221
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=42.34 E-value=66 Score=31.07 Aligned_cols=68 Identities=22% Similarity=0.398 Sum_probs=52.1
Q ss_pred EECCeeeEEeeccccCC-CCCHhHHHHHHHHHHHcC--CCEEEEeeecCcccCCCCeeeeeCc-ccHHHHHHHHHHcCCe
Q psy13824 125 RMDGRPFRFVSGEFHYF-RSPQERWREILRKIRSAG--LNAVSTYVGWSSHEAQPGTYSFDGH-RDVEYFMRLAAEEGLY 200 (226)
Q Consensus 125 ~ldGkpf~ilgGeiHYf-RvP~e~W~drL~kmKaaG--lNTV~tyV~WnlHEPe~G~FDFsG~-~DLd~FI~lA~e~GL~ 200 (226)
++||-+ +-+++.+.| +-+.+.-++.|++-+..| -..|-| +|+|..+|+ .+|.++.++++++|.+
T Consensus 136 iidG~r--ls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~Ivt----------egVfSMdGdiApL~~l~~L~~ky~a~ 203 (388)
T COG0156 136 IIDGIR--LSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVT----------EGVFSMDGDIAPLPELVELAEKYGAL 203 (388)
T ss_pred HHHHHH--hCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEE----------eccccCCCCcCCHHHHHHHHHHhCcE
Confidence 566665 455666665 467788888888876554 345555 899999998 8999999999999988
Q ss_pred EEEe
Q psy13824 201 VLLY 204 (226)
Q Consensus 201 VILR 204 (226)
+++-
T Consensus 204 L~VD 207 (388)
T COG0156 204 LYVD 207 (388)
T ss_pred EEEE
Confidence 8773
No 222
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=42.31 E-value=74 Score=30.15 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCCEEEEeee----cCcccCCCCeeeee------CcccHHHHHHHHHHcCCeEEE
Q psy13824 149 REILRKIRSAGLNAVSTYVG----WSSHEAQPGTYSFD------GHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~----WnlHEPe~G~FDFs------G~~DLd~FI~lA~e~GL~VIL 203 (226)
...++.+|++|+.+|.++-. .-.+.-..-.|... .-.|.++++++|++++..+|+
T Consensus 15 ~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~ 79 (449)
T TIGR00514 15 LRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIH 79 (449)
T ss_pred HHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEE
Confidence 56788899999999998641 21111111112110 124788999999999999887
No 223
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=41.79 E-value=74 Score=32.23 Aligned_cols=53 Identities=11% Similarity=0.195 Sum_probs=44.0
Q ss_pred cCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 139 HYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 139 HYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
-|...|.+.-+.+++++.++|+..+++..+-|-. +++...++.|+++|+.|..
T Consensus 84 G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~------------~n~~~~i~~ak~~G~~v~~ 136 (582)
T TIGR01108 84 GYRHYADDVVERFVKKAVENGMDVFRIFDALNDP------------RNLQAAIQAAKKHGAHAQG 136 (582)
T ss_pred ccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCEEEE
Confidence 3556678888999999999999999998876642 3788999999999998775
No 224
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=41.69 E-value=1.6e+02 Score=28.38 Aligned_cols=59 Identities=7% Similarity=0.179 Sum_probs=44.4
Q ss_pred CCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 141 FRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 141 fRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
+..+.+..++.++..++.|.++=-+++. |-|.|.=..|+=+ .++++++.|+++|++||.
T Consensus 171 ~~~~~~~le~~~~~~~~~~~~~k~v~l~-nP~NPTG~~~s~e---~l~~ll~~a~~~~~~iI~ 229 (468)
T PLN02450 171 FQITESALEEAYQQAQKLNLKVKGVLIT-NPSNPLGTTTTRT---ELNLLVDFITAKNIHLIS 229 (468)
T ss_pred CcCCHHHHHHHHHHHHhcCCCeeEEEEe-cCCCCCCcccCHH---HHHHHHHHHHHCCcEEEE
Confidence 3455666777777666666665555666 7788887778777 899999999999999885
No 225
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=41.68 E-value=27 Score=31.65 Aligned_cols=46 Identities=24% Similarity=0.400 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccCC---------CCeeeeeCcccHHHHHHHHHHcCCeE
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEAQ---------PGTYSFDGHRDVEYFMRLAAEEGLYV 201 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEPe---------~G~FDFsG~~DLd~FI~lA~e~GL~V 201 (226)
++.+++||++|++++. -.-.|-- |++.... +..+.++.|++.|+.+
T Consensus 107 ~e~l~~LkeAGl~~i~----~~g~E~l~~~~~~~i~~~~~t~~---~~l~~i~~a~~~Gi~~ 161 (309)
T TIGR00423 107 EEVLKRLKKAGLDSMP----GTGAEILDDSVRRKICPNKLSSD---EWLEVIKTAHRLGIPT 161 (309)
T ss_pred HHHHHHHHHcCCCcCC----CCcchhcCHHHHHhhCCCCCCHH---HHHHHHHHHHHcCCCc
No 226
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=41.67 E-value=86 Score=24.96 Aligned_cols=60 Identities=18% Similarity=0.146 Sum_probs=38.9
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeee--cCcccC-----CCCeeeeeCcccHHHHHHHHHHcCCeE-EEeec
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVG--WSSHEA-----QPGTYSFDGHRDVEYFMRLAAEEGLYV-LLYSG 206 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~--WnlHEP-----e~G~FDFsG~~DLd~FI~lA~e~GL~V-ILRpG 206 (226)
.++.++..+.+++.|+..+....+ |..... .+. .+. ....+.+.+++|++.|... ++.+|
T Consensus 26 ~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~-~~~~~~~~i~~a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 26 DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REE-ALEYLKKAIDLAKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHH-HHHHHHHHHHHHHHHTBSEEEEECT
T ss_pred hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHH-HHHHHHHHHHHHHHhCCCceeecCc
Confidence 356777888889999996666554 333211 111 111 1237899999999999994 46556
No 227
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=41.30 E-value=72 Score=29.84 Aligned_cols=43 Identities=21% Similarity=0.161 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
.+++++..++|+..|++....+.. ..+...++.|+++|+.|..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~------------~~~~~~i~~ak~~G~~v~~ 133 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA------------DVSEQHIGLARELGMDTVG 133 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH------------HHHHHHHHHHHHCCCeEEE
Confidence 367899999999999988754432 1568899999999998766
No 228
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=41.22 E-value=1e+02 Score=28.84 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=42.3
Q ss_pred eeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCe-----eee-------eCcccHHHHHHHHHH
Q psy13824 129 RPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGT-----YSF-------DGHRDVEYFMRLAAE 196 (226)
Q Consensus 129 kpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~-----FDF-------sG~~DLd~FI~lA~e 196 (226)
++.+|+|+..+- ...++.+|++|+.++.++-. -..+.++. +-. +.-.|.+++++.|++
T Consensus 3 ~~ililg~g~~~--------~~~~~~a~~lG~~~v~~~~~--~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~ 72 (450)
T PRK06111 3 QKVLIANRGEIA--------VRIIRTCQKLGIRTVAIYSE--ADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKK 72 (450)
T ss_pred ceEEEECCcHHH--------HHHHHHHHHcCCeEEEEech--hhccCcchhhCCEEEEcCCCCccccccCHHHHHHHHHH
Confidence 345666665442 56677899999999987531 01122211 111 122488999999999
Q ss_pred cCCeEEEeec
Q psy13824 197 EGLYVLLYSG 206 (226)
Q Consensus 197 ~GL~VILRpG 206 (226)
+++.+|+ ||
T Consensus 73 ~~id~I~-p~ 81 (450)
T PRK06111 73 TGAEAIH-PG 81 (450)
T ss_pred hCCCEEE-eC
Confidence 9998777 54
No 229
>PRK04302 triosephosphate isomerase; Provisional
Probab=41.13 E-value=65 Score=27.81 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=36.1
Q ss_pred HHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccc
Q psy13824 150 EILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFS 208 (226)
Q Consensus 150 drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPY 208 (226)
.-.+.++++|.+.|-+.- -|.+ -.|. .+.++++.|.++||.+|+..|..
T Consensus 76 ~~~~~l~~~G~~~vii~~----ser~---~~~~---e~~~~v~~a~~~Gl~~I~~v~~~ 124 (223)
T PRK04302 76 ILPEAVKDAGAVGTLINH----SERR---LTLA---DIEAVVERAKKLGLESVVCVNNP 124 (223)
T ss_pred hHHHHHHHcCCCEEEEec----cccc---cCHH---HHHHHHHHHHHCCCeEEEEcCCH
Confidence 448889999999887731 1222 2344 57889999999999999987764
No 230
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=41.13 E-value=64 Score=28.51 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 150 EILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 150 drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
+++++.+++|++.|++.++-+-. . .+.+.++.|++.|+.|...
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~---------~---~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEA---------D---VSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhH---------H---HHHHHHHHHHHCCCeEEEE
Confidence 67889999999999998776632 1 5778899999999887764
No 231
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=40.93 E-value=40 Score=30.99 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=8.8
Q ss_pred HHHHHHHHHcCCC-EEEEe
Q psy13824 149 REILRKIRSAGLN-AVSTY 166 (226)
Q Consensus 149 ~drL~kmKaaGlN-TV~ty 166 (226)
++.|+.||++|++ .|.++
T Consensus 117 ~e~L~~l~~aG~~~~v~iG 135 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVG 135 (313)
T ss_pred HHHHHHHHHcCCCEEEEEe
Confidence 3444455555555 34444
No 232
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=40.74 E-value=70 Score=28.13 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCEEEEee-ecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 149 REILRKIRSAGLNAVSTYV-GWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV-~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
++-+++++++|.+.|.+.- +. |. .+ +++++++.++++|+.+++-..|
T Consensus 91 ~~~i~~~~~~Gadgvii~dlp~---e~------~~---~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 91 DNFLNMARDVGADGVLFPDLLI---DY------PD---DLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred HHHHHHHHHcCCCEEEECCCCC---Cc------HH---HHHHHHHHHHHcCCCEEEEECC
Confidence 3347788999999999831 11 11 12 5788999999999998875554
No 233
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=40.73 E-value=74 Score=26.54 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=33.9
Q ss_pred HHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe-ecc
Q psy13824 151 ILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY-SGF 207 (226)
Q Consensus 151 rL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR-pGP 207 (226)
.++++.++|.+.|.++.... ...+.++++.|++.|+.+++- ++|
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-------------~~~~~~~i~~~~~~g~~~~~~~~~~ 112 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-------------DATIKGAVKAAKKHGKEVQVDLINV 112 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-------------HHHHHHHHHHHHHcCCEEEEEecCC
Confidence 67889999999998864421 125788999999999998876 465
No 234
>PRK01060 endonuclease IV; Provisional
Probab=40.52 E-value=91 Score=27.06 Aligned_cols=19 Identities=5% Similarity=0.010 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHcCCCEEEE
Q psy13824 147 RWREILRKIRSAGLNAVST 165 (226)
Q Consensus 147 ~W~drL~kmKaaGlNTV~t 165 (226)
++++.++.++++|..+|.+
T Consensus 90 ~~~~~i~~A~~lga~~vv~ 108 (281)
T PRK01060 90 FLIQEIERCAALGAKLLVF 108 (281)
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 4555555566666665555
No 235
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=40.44 E-value=34 Score=31.96 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCEEEEeee-cC--cccCCCCeeeeeCcccHHHHHHHHHHcCCe
Q psy13824 149 REILRKIRSAGLNAVSTYVG-WS--SHEAQPGTYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~-Wn--lHEPe~G~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
++.++.||++|+|.|.++|- =+ .+.--...++++ +..+.++.+++.|+.
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~---~~~~ai~~lr~~G~~ 154 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQ---DSKEAINLLHKNGIY 154 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHH---HHHHHHHHHHHcCCC
Confidence 57778888888888887663 11 111111234454 677777788887754
No 236
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=39.80 E-value=39 Score=31.19 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCEEEEeee-cC--cccCCCCe-eeeeCcccHHHHHHHHHHcCCe
Q psy13824 149 REILRKIRSAGLNAVSTYVG-WS--SHEAQPGT-YSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~-Wn--lHEPe~G~-FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
++.++.||++|+|.|+++|- =+ .+.-- |+ .+++ ++.+.++.+++.|+.
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l-gR~~~~~---~~~~ai~~l~~~G~~ 151 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLFL-GRQHSAK---NIAPAIETALKSGIE 151 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHHh-CCCCCHH---HHHHHHHHHHHcCCC
Confidence 57789999999999999764 21 11111 22 3444 778889999999985
No 237
>PLN02880 tyrosine decarboxylase
Probab=39.74 E-value=80 Score=30.87 Aligned_cols=56 Identities=20% Similarity=0.125 Sum_probs=39.7
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 142 RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 142 RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
|+..+..++.+++-++.|..-+-+ =-.-|..+.....+|+++.++|+++|+|+.+-
T Consensus 220 ~md~~~L~~~i~~~~~~g~~p~~v-------vataGTT~~GaiDpl~eI~~i~~~~~iwlHVD 275 (490)
T PLN02880 220 ALAPELLSEAISTDLSSGLIPFFL-------CATVGTTSSTAVDPLLELGKIAKSNGMWFHVD 275 (490)
T ss_pred cCCHHHHHHHHHHHHHCCCccEEE-------EEecCCCcCcccCcHHHHHHHHHHcCCEEEEe
Confidence 566667777777777777542221 12256667666779999999999999998875
No 238
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=39.67 E-value=66 Score=32.62 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=44.4
Q ss_pred ccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 138 FHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 138 iHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
..|...|.+.-+.+++++.++|++.+++..+-|-. .++...++.|+++|+.|..
T Consensus 88 ~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~i~~ak~~G~~v~~ 141 (592)
T PRK09282 88 VGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDV------------RNMEVAIKAAKKAGAHVQG 141 (592)
T ss_pred cccccccchhhHHHHHHHHHCCCCEEEEEEecChH------------HHHHHHHHHHHHcCCEEEE
Confidence 55666788889999999999999999998876553 2778888999999988764
No 239
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=39.65 E-value=36 Score=26.73 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeec-Ccc------------------cCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGW-SSH------------------EAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~W-nlH------------------EPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
+.-+.-.+.++..|+.++.....- +.. .+-....=.||+.|+...++.++++|..|++
T Consensus 52 ~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v 128 (149)
T cd06167 52 ERQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDSDFVPLVERLRELGKRVIV 128 (149)
T ss_pred hhHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCccHHHHHHHHHHcCCEEEE
Confidence 344555667778888888876432 111 1111222358999999999999999999887
No 240
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=39.44 E-value=33 Score=32.94 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCEEEEeee-cC--cccCCCCeeeeeCcccHHHHHHHHHHcCCe
Q psy13824 149 REILRKIRSAGLNAVSTYVG-WS--SHEAQPGTYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~-Wn--lHEPe~G~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
++.++.||++|+|.|+++|- =+ .++.-....+++ ++.+.++.+++.|+.
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~---~~~~ai~~lr~~G~~ 203 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEE---MVARAVELLRAAGFE 203 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHH---HHHHHHHHHHhcCCC
Confidence 57778888888888888762 11 112222334454 677777788877764
No 241
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=39.44 E-value=50 Score=30.38 Aligned_cols=77 Identities=13% Similarity=0.045 Sum_probs=45.7
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCe-----EEEeeccccccccCCCCc
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLY-----VLLYSGFSWTMKSSWDGT 218 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~-----VILRpGPYIcaesT~~g~ 218 (226)
..+.-.+.+++++++|+. |..|+.-.+..-.++ ....++.+.++.|.+.+-. ..+.||-......--+.+
T Consensus 153 t~~~~~~ai~~~~~~Gi~-v~~~~i~G~P~~se~----ea~ed~~~ti~~~~~l~~~vs~~~l~v~~gT~l~~~~~~G~~ 227 (313)
T TIGR01210 153 TFEDFIRAAELARKYGAG-VKAYLLFKPPFLSEK----EAIADMISSIRKCIPVTDTVSINPTNVQKGTLVEFLWNRGLY 227 (313)
T ss_pred CHHHHHHHHHHHHHcCCc-EEEEEEecCCCCChh----hhHHHHHHHHHHHHhcCCcEEEECCEEeCCCHHHHHHHcCCC
Confidence 467788999999999997 888877665321221 1112555667777665412 224445322222333457
Q ss_pred ccccccc
Q psy13824 219 CIGFLWT 225 (226)
Q Consensus 219 ~PaWL~~ 225 (226)
.|+||++
T Consensus 228 ~pp~lws 234 (313)
T TIGR01210 228 RPPWLWS 234 (313)
T ss_pred CCCCHHH
Confidence 7899874
No 242
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=39.09 E-value=33 Score=32.84 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCCEEEEeee-cCc---ccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 149 REILRKIRSAGLNAVSTYVG-WSS---HEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~-Wnl---HEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
++.++.|+++|++.|..++- -+- ..-..| .+.+ ++.+.++.++++|+.|..
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~-~~~~---~~~~~i~~~~~~Gi~v~~ 341 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKG-LTVE---IARRFTRDCHKLGIKVHG 341 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCC-CCHH---HHHHHHHHHHHCCCeEEE
Confidence 57889999999999998763 211 111122 2333 777899999999998754
No 243
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=39.06 E-value=52 Score=34.29 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=38.2
Q ss_pred HHHHHHcCCCEEEEe-eecCcccCC---CC-----------------eeeeeC-----cccHHHHHHHHHHcCCeEEEe
Q psy13824 152 LRKIRSAGLNAVSTY-VGWSSHEAQ---PG-----------------TYSFDG-----HRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 152 L~kmKaaGlNTV~ty-V~WnlHEPe---~G-----------------~FDFsG-----~~DLd~FI~lA~e~GL~VILR 204 (226)
+.-+|++|+++|+.- |+.-..|++ +| .|-=++ ...+..+|+.++++||-|||-
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 999999999999975 654344433 33 222222 247889999999999999984
No 244
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=38.93 E-value=71 Score=27.37 Aligned_cols=64 Identities=14% Similarity=0.058 Sum_probs=44.6
Q ss_pred ccccCC-CCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEee
Q psy13824 136 GEFHYF-RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 136 GeiHYf-RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRp 205 (226)
+...++ +.+.+.....++.+.++|.+.|.+.+.....+ ...... ++.++.+.|++.|+.+|+..
T Consensus 65 ~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~---~~~~~~---~i~~v~~~~~~~g~~~iie~ 129 (235)
T cd00958 65 STSLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEE---EREMLE---ELARVAAEAHKYGLPLIAWM 129 (235)
T ss_pred CCCCCCCCCCchhhhcCHHHHHHCCCCEEEEEEecCCch---HHHHHH---HHHHHHHHHHHcCCCEEEEE
Confidence 344444 66777777789999999999986665543221 122223 77889999999999998854
No 245
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=38.28 E-value=1.3e+02 Score=26.75 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.8
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEee
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYV 167 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV 167 (226)
.++.|.+..++++++|++.|++.+
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~ 123 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNI 123 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEC
Confidence 368899999999999999999864
No 246
>PTZ00304 NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
Probab=38.12 E-value=39 Score=33.54 Aligned_cols=63 Identities=16% Similarity=0.089 Sum_probs=44.2
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcC--------------CeEEEeeccc
Q psy13824 143 SPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEG--------------LYVLLYSGFS 208 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~G--------------L~VILRpGPY 208 (226)
-|.+..+-.+..+++.|.+.+-+||-=+..+.. .-|.+.|+.|.+.| +.|+.-+|-|
T Consensus 122 ~P~~vieG~~i~a~a~gA~~~~I~Ir~e~~~~~---------~~l~~Ai~e~~~~g~lg~n~~~~~~~~~i~v~~gag~Y 192 (461)
T PTZ00304 122 DPHKLVEGALLAGFAMRARAAYIYIRGEFYNEA---------RALQQAIDEAYKKGFLGKNACGSGYDFDVYVHRGAGAY 192 (461)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEEccCcHHHH---------HHHHHHHHHHHHcCcccccccCCCCCeEEEEEECCCcC
Confidence 456667778888999999999999854443322 26777888876553 4444555999
Q ss_pred cccccC
Q psy13824 209 WTMKSS 214 (226)
Q Consensus 209 IcaesT 214 (226)
||||-|
T Consensus 193 ~~GeEt 198 (461)
T PTZ00304 193 ICGEET 198 (461)
T ss_pred CCCHHH
Confidence 998754
No 247
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=37.97 E-value=84 Score=29.40 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
.++++++.++|+..|++....+-. ....+.++.|++.|+.|..
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~------------d~~~~~i~~ak~~G~~v~~ 132 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA------------DVSEQHIGMARELGMDTVG 132 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH------------HHHHHHHHHHHHcCCeEEE
Confidence 467899999999999987753322 1467899999999998765
No 248
>KOG4039|consensus
Probab=37.92 E-value=88 Score=28.48 Aligned_cols=73 Identities=12% Similarity=0.194 Sum_probs=41.7
Q ss_pred ccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCee-eeeCcccHHH-HHHHHHHcCCeEEEeeccccccc
Q psy13824 136 GEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTY-SFDGHRDVEY-FMRLAAEEGLYVLLYSGFSWTMK 212 (226)
Q Consensus 136 GeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~F-DFsG~~DLd~-FI~lA~e~GL~VILRpGPYIcae 212 (226)
|.--..+++++|--+..+.+|+-|+.+.-.--.=..|-..+=-| .-.|. +++ ++++ +-.-++|+||||..|-.
T Consensus 99 GadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KGE--vE~~v~eL--~F~~~~i~RPG~ll~~R 173 (238)
T KOG4039|consen 99 GADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKGE--VERDVIEL--DFKHIIILRPGPLLGER 173 (238)
T ss_pred ccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccch--hhhhhhhc--cccEEEEecCcceeccc
Confidence 33333499999999999999999998765532222222211111 12221 111 1111 23345999999999843
No 249
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=37.84 E-value=1.1e+02 Score=28.93 Aligned_cols=66 Identities=11% Similarity=0.138 Sum_probs=44.8
Q ss_pred eeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 129 RPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 129 kpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
++.++++|..- .+ ...+++....+++.|+..+ ..+-.+|+| +.+ ++++.++.+++.+.-+|+..|=
T Consensus 32 ~~~livt~~~~-~~--~g~~~~v~~~L~~~~i~~~----~f~~v~~np---~~~---~v~~~~~~~~~~~~D~IiaiGG 97 (383)
T PRK09860 32 TRTLIVTDNML-TK--LGMAGDVQKALEERNIFSV----IYDGTQPNP---TTE---NVAAGLKLLKENNCDSVISLGG 97 (383)
T ss_pred CEEEEEcCcch-hh--CccHHHHHHHHHHcCCeEE----EeCCCCCCc---CHH---HHHHHHHHHHHcCCCEEEEeCC
Confidence 66677766411 12 2456777777888998632 234556665 334 7889999999999999987764
No 250
>PRK09267 flavodoxin FldA; Validated
Probab=37.81 E-value=75 Score=25.79 Aligned_cols=75 Identities=7% Similarity=0.102 Sum_probs=48.3
Q ss_pred EECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEE
Q psy13824 125 RMDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 125 ~ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VI 202 (226)
.+++...+++|...|+...++..|.+-+.+++...++-..+.++ .....+...-.|. .-++.+-+..++.|..++
T Consensus 43 ~l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaif-g~g~~~~~~~~~~--~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 43 DFEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALF-GLGDQEDYAEYFC--DAMGTLYDIVEPRGATIV 117 (169)
T ss_pred hHhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEE-ecCCCCcchHHHH--HHHHHHHHHHHHCCCEEE
Confidence 35566789999999987777888988888887777776666666 2221111111122 235566777888886543
No 251
>PRK06703 flavodoxin; Provisional
Probab=37.78 E-value=77 Score=25.22 Aligned_cols=74 Identities=11% Similarity=-0.042 Sum_probs=43.9
Q ss_pred ECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 126 MDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 126 ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
+.+...+++|...+..-.+|+.+.+-+..+++.-++.....++-...- .|.. .....+.+-+..++.|..++..
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~----~y~~-~~~a~~~l~~~l~~~G~~~~~~ 119 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDT----AYPL-FCEAVTIFEERLVERGAELVQE 119 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCC----ChHH-HHHHHHHHHHHHHHCCCEEccc
Confidence 556667778776664445566777778888776666555555522110 0110 1124455777778889887764
No 252
>TIGR03105 gln_synth_III glutamine synthetase, type III. This family consists of the type III isozyme of glutamine synthetase, originally described in Rhizobium meliloti, where types I and II also occur.
Probab=37.72 E-value=1.3e+02 Score=29.14 Aligned_cols=61 Identities=16% Similarity=0.289 Sum_probs=46.1
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCc-cc----------HHHHH-HHHHHcCCeEEEeeccccc
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGH-RD----------VEYFM-RLAAEEGLYVLLYSGFSWT 210 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~-~D----------Ld~FI-~lA~e~GL~VILRpGPYIc 210 (226)
.+.-++..+.|.++|+..-.. .||-.||||.++=. .| +...+ +.|+++|+.+..-|=|+..
T Consensus 157 ~~~~~~i~~~l~~~gi~ve~~-----~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~vk~vA~~~Gl~atFmpKP~~~ 229 (435)
T TIGR03105 157 YDVLTEISDAMNALGWDPYQN-----DHEDANGQFEMNFTYADALTTADRHAFFRYMVKEIAEKHGMRATFMPKPFAD 229 (435)
T ss_pred hHHHHHHHHHHHHCCCCeEEe-----ecCcCCCceEEecCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEecCccCCC
Confidence 456788888999999998887 88999999987511 01 12222 4688999999999999875
No 253
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=37.68 E-value=46 Score=29.64 Aligned_cols=31 Identities=35% Similarity=0.474 Sum_probs=26.3
Q ss_pred cccCCCCCH--hHHHHHHHHHHHcCCCEEEEee
Q psy13824 137 EFHYFRSPQ--ERWREILRKIRSAGLNAVSTYV 167 (226)
Q Consensus 137 eiHYfRvP~--e~W~drL~kmKaaGlNTV~tyV 167 (226)
++|+|.-+| +.+.+.+++|++.|.+.+.+-+
T Consensus 141 S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~ 173 (253)
T PRK02412 141 SYHDFEKTPPKEEIVERLRKMESLGADIVKIAV 173 (253)
T ss_pred eeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 999987655 6788999999999999888854
No 254
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=37.61 E-value=95 Score=31.30 Aligned_cols=84 Identities=13% Similarity=0.017 Sum_probs=59.1
Q ss_pred CeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 128 GRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 128 Gkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
+++-+.+|+..|+++-+.+.=-++|.+-.++|.+-+.|-. .||-+ .+.+|++.+++.++.||...-|
T Consensus 460 ~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~----------~fd~~---~~~~~~~~~~~~~vpIi~GImP 526 (612)
T PRK08645 460 KKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQP----------VYDEE---LIEELLEATKHLGVPIFIGIMP 526 (612)
T ss_pred CCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecc----------cCCHH---HHHHHHHHHhcCCCCEEEEeee
Confidence 3455778888887766655555566666789999999943 34555 7889999998888889988888
Q ss_pred ccccc------cCC-CCccccccc
Q psy13824 208 SWTMK------SSW-DGTCIGFLW 224 (226)
Q Consensus 208 YIcae------sT~-~g~~PaWL~ 224 (226)
..+.. ..+ +-..|.|+.
T Consensus 527 i~s~k~~~~~~~~~~Gv~vP~~l~ 550 (612)
T PRK08645 527 LVSYRNAEFLHNEVPGITLPEEIR 550 (612)
T ss_pred cCCHHHHHHHHhCCCCCCCCHHHH
Confidence 76642 122 456677664
No 255
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=37.60 E-value=3.6e+02 Score=25.90 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=52.3
Q ss_pred eEEECC-eeeEEeeccccCCCCC-HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCc--ccHHHHHHHHHHcC
Q psy13824 123 TFRMDG-RPFRFVSGEFHYFRSP-QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGH--RDVEYFMRLAAEEG 198 (226)
Q Consensus 123 ~F~ldG-kpf~ilgGeiHYfRvP-~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~--~DLd~FI~lA~e~G 198 (226)
...++| +|+++++| +=.+. ++.-.+.-+.+|+.|.+.++-+.+= |+---|.|.|. .-|+.+-+.+++.|
T Consensus 93 ~v~iGg~~~l~vIAG---PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~k----pRtsp~sf~G~g~~gl~~L~~~~~e~G 165 (352)
T PRK13396 93 PVPFGENHPVVVVAG---PCSVENEEMIVETAKRVKAAGAKFLRGGAYK----PRTSPYAFQGHGESALELLAAAREATG 165 (352)
T ss_pred CeEecCCCeEEEEEe---CCcccCHHHHHHHHHHHHHcCCCEEEeeeec----CCCCCcccCCchHHHHHHHHHHHHHcC
Confidence 455554 55777877 22333 7888889999999999999976543 55555777753 44555666677899
Q ss_pred CeEEEe
Q psy13824 199 LYVLLY 204 (226)
Q Consensus 199 L~VILR 204 (226)
|.++-.
T Consensus 166 l~~~te 171 (352)
T PRK13396 166 LGIITE 171 (352)
T ss_pred CcEEEe
Confidence 998754
No 256
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=37.44 E-value=1.1e+02 Score=23.23 Aligned_cols=71 Identities=10% Similarity=0.061 Sum_probs=41.0
Q ss_pred CCeeeEEeeccccCCCCCH-hHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 127 DGRPFRFVSGEFHYFRSPQ-ERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 127 dGkpf~ilgGeiHYfRvP~-e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
.....+++|...|....+| +...+-+++++...++.....++=..-.. ++|. .-.+.+-+.+.+.|..++.
T Consensus 44 ~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk~~~vfgt~g~~----~~f~--~~~~~~~~~l~~~g~~~v~ 115 (140)
T TIGR01753 44 LSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGKKVALFGSGDWG----YEFC--EAVDDWEERLKEAGATIIA 115 (140)
T ss_pred hcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCCEEEEEecCCCC----chhh--HHHHHHHHHHHHCCCEEec
Confidence 3456788888887765554 67777777777655554444444111000 1122 2345566666778888765
No 257
>KOG0471|consensus
Probab=37.41 E-value=41 Score=33.56 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecCcccCCCCee---------eeeCcccHHHHHHHHHHcCCeEEEee
Q psy13824 147 RWREILRKIRSAGLNAVSTYVGWSSHEAQPGTY---------SFDGHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 147 ~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~F---------DFsG~~DLd~FI~lA~e~GL~VILRp 205 (226)
--.+.|+.+|++|++++=..=+=...++.-|.. .|.-..|+.++|+.+++.||++|+..
T Consensus 41 GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~ 108 (545)
T KOG0471|consen 41 GITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADL 108 (545)
T ss_pred cchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEee
Confidence 346789999999999997765555555544422 13224699999999999999999863
No 258
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=37.25 E-value=47 Score=25.03 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCCEEEEeee-cC---cccCCCCeeeeeCcccHHHHHHHHHHcCCe
Q psy13824 149 REILRKIRSAGLNAVSTYVG-WS---SHEAQPGTYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~-Wn---lHEPe~G~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
++.++.+++.|+++|...+. -+ .++......+++ ++.+.++.+.+.|+.
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~g~~ 142 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFE---RVLEALERLKEAGIP 142 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHH---HHHHHHHHHHHTTSE
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHH---HHHHHHHHHHHcCCC
Confidence 88999999999999999875 21 333434556666 788899999999988
No 259
>KOG1643|consensus
Probab=37.16 E-value=56 Score=30.00 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=34.8
Q ss_pred HHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 153 RKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 153 ~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
.++|++|...|-+ -|..++-.|.=+. ..+.+=.+-|.++||.||+++|-
T Consensus 80 ~mlkd~G~~wVIl-----GHSERR~~fgEsd-~~i~~K~~~Al~eGl~ViaCIGE 128 (247)
T KOG1643|consen 80 EMLKDLGAEWVIL-----GHSERRHVFGESD-EFIADKTAHALAEGLKVIACIGE 128 (247)
T ss_pred HHHHhCCCCEEEe-----cchhhhhhhCCch-HHHHHHHHHHHHcCCeEEEEecc
Confidence 5789999998888 5666666666551 12233346688899999999884
No 260
>PRK15108 biotin synthase; Provisional
Probab=37.04 E-value=54 Score=30.63 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=11.0
Q ss_pred HHHHHHHHHcCCCEEEE
Q psy13824 149 REILRKIRSAGLNAVST 165 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~t 165 (226)
++.++++|++|++.+..
T Consensus 136 ~e~l~~LkeAGld~~n~ 152 (345)
T PRK15108 136 ESQAQRLANAGLDYYNH 152 (345)
T ss_pred HHHHHHHHHcCCCEEee
Confidence 56666777777775544
No 261
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=36.92 E-value=1.1e+02 Score=27.60 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=34.9
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCc-ccHHHHHHHHHHcCCeEEEe
Q psy13824 142 RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGH-RDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 142 RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~-~DLd~FI~lA~e~GL~VILR 204 (226)
..+.+.+++.+....+.+.+|.-+.+ ++.++-+|. .+++++.++|+++|+++|+-
T Consensus 151 ~~d~~~l~~~i~~~~~~~~~~~~v~~--------~~v~~~tG~~~~l~~i~~la~~~~~~li~D 206 (393)
T TIGR01822 151 NNDMADLEAQLKEARAAGARHRLIAT--------DGVFSMDGVIAPLDEICDLADKYDALVMVD 206 (393)
T ss_pred CCCHHHHHHHHHhhhhcCCCceEEEE--------eCCccCCCCcCCHHHHHHHHHHcCCEEEEE
Confidence 35667777777655444445543332 223333332 48999999999999998864
No 262
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=36.60 E-value=43 Score=31.04 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=13.6
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCc
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSS 171 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~Wnl 171 (226)
.+.-.+.+++++++|+..|.+.+..++
T Consensus 143 ~~~~~~a~~~l~~~g~~~v~~dli~Gl 169 (375)
T PRK05628 143 PGRAVAAAREARAAGFEHVNLDLIYGT 169 (375)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccC
Confidence 344445555555555555555544444
No 263
>PLN03008 Phospholipase D delta
Probab=36.56 E-value=74 Score=34.14 Aligned_cols=65 Identities=26% Similarity=0.436 Sum_probs=44.4
Q ss_pred eeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeee-cCcc-------cCC-CCeeeeeCcccHHHHHHHHHHcCCe
Q psy13824 130 PFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVG-WSSH-------EAQ-PGTYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 130 pf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~-WnlH-------EPe-~G~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
|-+-+.|...| -|..-|+|....+..| .-.+||. |.+. .|. || .+..-|+++|+..+++|.+
T Consensus 225 p~i~l~~g~~y--~~~rcwedi~~AI~~A---k~~IyI~gWsl~~ei~L~R~~~~~~----~~~~~Lg~LLk~KA~eGVr 295 (868)
T PLN03008 225 PAIGLDNGKVY--EHGKCWEDICYAISEA---HHMIYIVGWSIFHKIKLVRETKVPR----DKDMTLGELLKYKSQEGVR 295 (868)
T ss_pred CccccCCCccc--cccccHHHHHHHHHhh---hheEEEeceeecceeEEecCCCCCC----CCCccHHHHHHHHHHCCCE
Confidence 33334444444 4667899999999887 3567886 7765 232 22 1345799999999999999
Q ss_pred EEE
Q psy13824 201 VLL 203 (226)
Q Consensus 201 VIL 203 (226)
|.+
T Consensus 296 V~i 298 (868)
T PLN03008 296 VLL 298 (868)
T ss_pred EEE
Confidence 754
No 264
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=36.33 E-value=71 Score=29.89 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=25.0
Q ss_pred ccCCCCCHhHHHHHHHHHHHcCCCEEEEe
Q psy13824 138 FHYFRSPQERWREILRKIRSAGLNAVSTY 166 (226)
Q Consensus 138 iHYfRvP~e~W~drL~kmKaaGlNTV~ty 166 (226)
....+.+.+.-.+..+.+.++|+..|++.
T Consensus 16 ~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 16 AIRHQFTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 33457789999999999999999999996
No 265
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=36.19 E-value=84 Score=32.62 Aligned_cols=59 Identities=8% Similarity=0.073 Sum_probs=40.8
Q ss_pred HhHHHHHHHHHHHcCCCEEEEee---------------ecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecccc
Q psy13824 145 QERWREILRKIRSAGLNAVSTYV---------------GWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSW 209 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV---------------~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYI 209 (226)
.+.....|+++|++|+|||-.-+ || -| -||+-|.= | .-...++.+.|++|..|..||-
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~--lp~r~d~f---~-~~aw~l~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RL--LPMRADLF---N-RVAWQLRTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cc--cccccCCc---C-HHHHHHHHhhCCEEEEecccee
Confidence 46688899999999999996654 45 22 23333311 1 1134458899999999999994
Q ss_pred c
Q psy13824 210 T 210 (226)
Q Consensus 210 c 210 (226)
-
T Consensus 406 ~ 406 (671)
T PRK14582 406 F 406 (671)
T ss_pred e
Confidence 3
No 266
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=36.09 E-value=1.7e+02 Score=24.47 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=43.9
Q ss_pred ccccCCCC-----CHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeC---cccHHHHHHHHHHcCCeEEEeecc
Q psy13824 136 GEFHYFRS-----PQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDG---HRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 136 GeiHYfRv-----P~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG---~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
|.+|+++. +.+..+.-++.++..+...-...+.+ |..++.+.-+. ...+.+|++..+++|.++++--++
T Consensus 56 G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~~~i~lDi---E~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~~ 132 (196)
T cd06416 56 DVYFFPCINCCGSAAGQVQTFLQYLKANGIKYGTVWIDI---EQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSSQ 132 (196)
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHHhCCCceeEEEEEE---ecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 88898743 37778888888888665421111222 32233322111 136789999999999999887666
Q ss_pred c
Q psy13824 208 S 208 (226)
Q Consensus 208 Y 208 (226)
+
T Consensus 133 ~ 133 (196)
T cd06416 133 Y 133 (196)
T ss_pred c
Confidence 4
No 267
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=35.55 E-value=2.4e+02 Score=24.66 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=38.6
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 142 RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 142 RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
+.+.+..++.+.+-++.|.++.-+.+.- ....-|.. .+++++.++|+++|+++++-
T Consensus 129 ~~d~~~l~~~i~~~~~~~~~~~~v~~~~--~~~~tG~~-----~~~~~i~~~~~~~~~~l~vD 184 (345)
T cd06450 129 RMDPEALEAAIDEDKAEGLNPIMVVATA--GTTDTGAI-----DPLEEIADLAEKYDLWLHVD 184 (345)
T ss_pred CcCHHHHHHHHHHHHHCCCCcEEEEEec--ccCCCCCC-----CCHHHHHHHHHHhCCeEEEe
Confidence 6677888888777667787764332221 12224553 38899999999999998875
No 268
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=35.53 E-value=1.2e+02 Score=29.56 Aligned_cols=59 Identities=7% Similarity=0.129 Sum_probs=43.8
Q ss_pred CCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 141 FRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 141 fRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
++.+.+..++.+++.++.+.++=-+++. |-|.|.=-.++=+ .++++++.|+++|+.||.
T Consensus 179 ~~~~~~~le~a~~~a~~~~~~~k~l~l~-nP~NPTG~~~s~e---~l~~L~~~a~~~~i~lI~ 237 (496)
T PLN02376 179 FKLTVDAADWAYKKAQESNKKVKGLILT-NPSNPLGTMLDKD---TLTNLVRFVTRKNIHLVV 237 (496)
T ss_pred CcCCHHHHHHHHHHHHhcCCCeeEEEEc-CCCCCCCccCCHH---HHHHHHHHHHHcCCEEEE
Confidence 4666777777776666656554445555 7788887788777 889999999999998875
No 269
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=35.37 E-value=43 Score=32.56 Aligned_cols=51 Identities=18% Similarity=0.118 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCEEEEeee-cC--cccCCCCeeeeeCcccHHHHHHHHHHcCCeEE
Q psy13824 149 REILRKIRSAGLNAVSTYVG-WS--SHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~-Wn--lHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VI 202 (226)
++.++.|+++|++.|..++- =+ ..+--....+.+ +..+.+++++++|+.+.
T Consensus 287 ~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~---~~~~ai~~l~~~Gi~~~ 340 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTS---TNKEAIRLLRQHNILSE 340 (497)
T ss_pred HHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHH---HHHHHHHHHHHCCCcEE
Confidence 57889999999999999752 11 111111123444 67788999999999754
No 270
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=35.21 E-value=2.3e+02 Score=23.07 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=42.8
Q ss_pred CCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCC----eeeeeCc-ccHHHHHHHHHHcCCeE
Q psy13824 127 DGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPG----TYSFDGH-RDVEYFMRLAAEEGLYV 201 (226)
Q Consensus 127 dGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G----~FDFsG~-~DLd~FI~lA~e~GL~V 201 (226)
+.++.+++|...-+ ..- ++-..++...|.++....-.- .....++ .+.++|. .++.+.++.|++.|.+|
T Consensus 29 ~a~~I~i~G~G~S~--~~A---~~~~~~l~~~g~~~~~~~~~~-~~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~i 102 (179)
T TIGR03127 29 KAKRIFVAGAGRSG--LVG---KAFAMRLMHLGFNVYVVGETT-TPSIKKGDLLIAISGSGETESLVTVAKKAKEIGATV 102 (179)
T ss_pred hCCEEEEEecCHHH--HHH---HHHHHHHHhCCCeEEEeCCcc-cCCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeE
Confidence 34556666643221 222 333445677898887654321 1122233 4566775 68899999999999998
Q ss_pred EE
Q psy13824 202 LL 203 (226)
Q Consensus 202 IL 203 (226)
|+
T Consensus 103 i~ 104 (179)
T TIGR03127 103 AA 104 (179)
T ss_pred EE
Confidence 87
No 271
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=35.03 E-value=49 Score=31.08 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCCEEEEeee-cCcccCCCCeeeeeCc---ccHHHHHHHHHHcCCeEEE
Q psy13824 149 REILRKIRSAGLNAVSTYVG-WSSHEAQPGTYSFDGH---RDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~-WnlHEPe~G~FDFsG~---~DLd~FI~lA~e~GL~VIL 203 (226)
+++++++.++|+..|+++++ +..|-. -++..+-. ....+.++.|+++|+.|.+
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~Sd~~~~--~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~ 130 (363)
T TIGR02090 74 KKDIDKAIDCGVDSIHTFIATSPIHLK--YKLKKSRDEVLEKAVEAVEYAKEHGLIVEF 130 (363)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 56788888999999988887 444421 11111110 2456778888888888765
No 272
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=34.95 E-value=95 Score=24.65 Aligned_cols=43 Identities=26% Similarity=0.188 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCe
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
+++++.+++.|+.||----+= .| ++++-.+ +..-+.|++.||.
T Consensus 17 ~~d~~~la~~GfktVInlRpd--~E-~~~qp~~------~~~~~~a~~~Gl~ 59 (110)
T PF04273_consen 17 PEDLAQLAAQGFKTVINLRPD--GE-EPGQPSS------AEEAAAAEALGLQ 59 (110)
T ss_dssp HHHHHHHHHCT--EEEE-S-T--TS-TTT-T-H------HCHHHHHHHCT-E
T ss_pred HHHHHHHHHCCCcEEEECCCC--CC-CCCCCCH------HHHHHHHHHcCCe
Confidence 677888888888888762210 11 1233332 2344667777776
No 273
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=34.83 E-value=1e+02 Score=28.93 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=40.1
Q ss_pred CeeeEEeeccccC---------------------CCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCccc
Q psy13824 128 GRPFRFVSGEFHY---------------------FRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRD 186 (226)
Q Consensus 128 Gkpf~ilgGeiHY---------------------fRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~D 186 (226)
+++.++.+.+.|| .|...+..++.+++..+.|..-+- |.=+.=...-|.+ .|
T Consensus 140 ~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~--vvat~Gtt~~Ga~-----D~ 212 (373)
T PF00282_consen 140 PKPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFA--VVATAGTTNTGAI-----DP 212 (373)
T ss_dssp SSEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEE--EEEEBS-TTTSBB------S
T ss_pred cccccccccccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhccccccccccee--eeccCCCcccccc-----cC
Confidence 4567777777888 345556666666667777653211 1112222333333 38
Q ss_pred HHHHHHHHHHcCCeEEEe
Q psy13824 187 VEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 187 Ld~FI~lA~e~GL~VILR 204 (226)
++++.++|+++++|+.+-
T Consensus 213 l~~i~~i~~~~~~wlHVD 230 (373)
T PF00282_consen 213 LEEIADICEKYNIWLHVD 230 (373)
T ss_dssp HHHHHHHHHHCT-EEEEE
T ss_pred HHHHhhhccccceeeeec
Confidence 888889998888888774
No 274
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=34.52 E-value=2e+02 Score=27.23 Aligned_cols=56 Identities=29% Similarity=0.423 Sum_probs=46.0
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeC--cccHHHHHHHHHHcCCeEEEe
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDG--HRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG--~~DLd~FI~lA~e~GL~VILR 204 (226)
.|+..+.-+..|++|.+.++-..| -|+---|||.| ..-|+..-+.++++||-|+-.
T Consensus 58 ~E~i~~~A~~vk~~Ga~~lRGgaf----KPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtE 115 (286)
T COG2876 58 EEQVRETAESVKAAGAKALRGGAF----KPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTE 115 (286)
T ss_pred HHHHHHHHHHHHHcchhhccCCcC----CCCCCcccccccCHHHHHHHHHHHHHcCCeeEEE
Confidence 688899999999999999999654 67778899996 356666777788899998754
No 275
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=34.47 E-value=60 Score=31.12 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCCEEEEeee-cC--cccCCCCeeeeeCcccHHHHHHHHHHcCCe
Q psy13824 149 REILRKIRSAGLNAVSTYVG-WS--SHEAQPGTYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~-Wn--lHEPe~G~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
++.++.||++|+|.|.++|- =+ .++.-.+..+++ +..+.++.+++.|+.
T Consensus 151 ~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~---~~~~ai~~l~~~G~~ 202 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEE---MIFELMNHAREAGFT 202 (455)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHH---HHHHHHHHHHhcCCC
Confidence 46677777777777777652 11 111112223444 566677777777763
No 276
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=34.21 E-value=1.4e+02 Score=29.28 Aligned_cols=52 Identities=21% Similarity=0.290 Sum_probs=40.0
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 142 RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 142 RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
+++++..++.+.+-.+.| =.|- .-|..++....|++++-++|+++|+++.+-
T Consensus 192 ~id~~~l~~~i~~~t~~g-~vV~----------~aGtT~~G~iDdi~~ia~ia~~~~i~lHVD 243 (460)
T COG0076 192 RIDVDALEEAIDENTIGG-VVVG----------TAGTTDTGSIDDIEELADIAEEYGIWLHVD 243 (460)
T ss_pred ccCHHHHHHHHHhhccCc-eEEE----------EecCCCCCccCCHHHHHHHHHHcCCcEEEE
Confidence 666777777777777777 1222 268888877789999999999999998774
No 277
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=34.19 E-value=1.4e+02 Score=27.74 Aligned_cols=68 Identities=22% Similarity=0.239 Sum_probs=46.1
Q ss_pred CeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 128 GRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 128 Gkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
|++.+|+.|...... ...+++..+.+++.|+... .++-.+|+| +.+ ++++.++++++.+.-+|+-.|=
T Consensus 25 g~r~livt~~~~~~~--~g~~~~v~~~L~~~~~~~~----~~~~v~~~p---~~~---~v~~~~~~~~~~~~D~IiavGG 92 (380)
T cd08185 25 GKKALIVTGNGSSKK--TGYLDRVIELLKQAGVEVV----VFDKVEPNP---TTT---TVMEGAALAREEGCDFVVGLGG 92 (380)
T ss_pred CCeEEEEeCCCchhh--ccHHHHHHHHHHHcCCeEE----EeCCccCCC---CHH---HHHHHHHHHHHcCCCEEEEeCC
Confidence 466777776543211 3567777778888898643 234556666 233 7888999999999998887664
No 278
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=34.16 E-value=1.2e+02 Score=22.63 Aligned_cols=70 Identities=23% Similarity=0.317 Sum_probs=44.2
Q ss_pred eeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecC-cccC----CCC----eeeeeCc-ccHHHHHHHHHHcC
Q psy13824 129 RPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWS-SHEA----QPG----TYSFDGH-RDVEYFMRLAAEEG 198 (226)
Q Consensus 129 kpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~Wn-lHEP----e~G----~FDFsG~-~DLd~FI~lA~e~G 198 (226)
++.+++|...-+ ..=+.--.++++.|-.....+-.-. .|+| .++ .+.++|. .++.+.++.|++.|
T Consensus 6 ~~i~i~G~G~s~-----~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g 80 (131)
T PF01380_consen 6 KRIYIYGSGSSY-----GVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRFAKERG 80 (131)
T ss_dssp SEEEEEESTHHH-----HHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTT
T ss_pred CEEEEEEcchHH-----HHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHHHHhcC
Confidence 445555544333 3334455567777777766665533 4443 333 3455664 68899999999999
Q ss_pred CeEEE
Q psy13824 199 LYVLL 203 (226)
Q Consensus 199 L~VIL 203 (226)
..||+
T Consensus 81 ~~vi~ 85 (131)
T PF01380_consen 81 APVIL 85 (131)
T ss_dssp SEEEE
T ss_pred CeEEE
Confidence 99886
No 279
>PLN02284 glutamine synthetase
Probab=34.12 E-value=1.3e+02 Score=28.51 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=39.9
Q ss_pred HHHHHHcCCCEEEEeeecCcccCCCCeeeee-Ccc----------cHHHHHH-HHHHcCCeEEEeeccccc
Q psy13824 152 LRKIRSAGLNAVSTYVGWSSHEAQPGTYSFD-GHR----------DVEYFMR-LAAEEGLYVLLYSGFSWT 210 (226)
Q Consensus 152 L~kmKaaGlNTV~tyV~WnlHEPe~G~FDFs-G~~----------DLd~FI~-lA~e~GL~VILRpGPYIc 210 (226)
.+.+.++|++.-.+ .||-.||||.+. +-. -+..+++ .|+++|+.+-.-|=|+..
T Consensus 176 ~~~l~~~Gi~ve~~-----h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~~ 241 (354)
T PLN02284 176 YKACLYAGINISGI-----NGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIPG 241 (354)
T ss_pred HHHHHHCCCCeEEE-----EcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCCC
Confidence 34449999998887 999999999874 111 1123333 789999999999999763
No 280
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=33.91 E-value=1.7e+02 Score=23.38 Aligned_cols=50 Identities=12% Similarity=0.272 Sum_probs=37.9
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCccc---CCCCeeeeeCcccHHHHHHHHHHc-CCeEEE
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHE---AQPGTYSFDGHRDVEYFMRLAAEE-GLYVLL 203 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHE---Pe~G~FDFsG~~DLd~FI~lA~e~-GL~VIL 203 (226)
.+.+..++++|+.-|+++|...--=-... +=| .+|++.+..++. |+.||.
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP---------~~~~~~~~I~~~~gi~VV~ 104 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCP---------HIDEIKKIIEEKFGIEVVE 104 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCC---------CHHHHHHHHHHHhCCCEee
Confidence 67899999999999999888763211212 223 578899988888 999987
No 281
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=33.71 E-value=93 Score=28.62 Aligned_cols=61 Identities=15% Similarity=-0.004 Sum_probs=39.1
Q ss_pred cccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCe--EEEeeccccc
Q psy13824 137 EFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLY--VLLYSGFSWT 210 (226)
Q Consensus 137 eiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~--VILRpGPYIc 210 (226)
+.|+..-+.+.=-+.|++-.++|.+.+.| .=.||.+ .+.+|++.+++.|+. |+...-|..+
T Consensus 154 eghp~~~~~~~dl~~Lk~K~~aGA~~~iT----------Q~~Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s 216 (296)
T PRK09432 154 EVHPEAKSAQADLINLKRKVDAGANRAIT----------QFFFDVE---SYLRFRDRCVSAGIDVEIVPGILPVSN 216 (296)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCeeec----------ccccchH---HHHHHHHHHHHcCCCCCEEeeccccCC
Confidence 44554444322112566666799988877 3356776 899999999999955 5555555543
No 282
>PRK07360 FO synthase subunit 2; Reviewed
Probab=33.44 E-value=44 Score=31.36 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcc-----cCCCCeeeeeCcccHHHHHHHHHHcCCeE
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSH-----EAQPGTYSFDGHRDVEYFMRLAAEEGLYV 201 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlH-----EPe~G~FDFsG~~DLd~FI~lA~e~GL~V 201 (226)
++.++++|++|++.+.-.-...++ .-.|++-++. .-.+.++.|++.|+.+
T Consensus 163 ~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~---~~l~~i~~a~~~Gl~~ 217 (371)
T PRK07360 163 EEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTA---EWIEIVKTAHKLGLPT 217 (371)
T ss_pred HHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHH---HHHHHHHHHHHcCCCc
Confidence 677889999999887310001000 0124444443 3367889999999975
No 283
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=33.19 E-value=55 Score=30.16 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=30.8
Q ss_pred EeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEee
Q psy13824 133 FVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYV 167 (226)
Q Consensus 133 ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV 167 (226)
.-||++-|..-..+..++|+++.|++|+.-|-.+.
T Consensus 60 PRgGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~ 94 (241)
T COG3142 60 PRGGDFVYSDDELEIMLEDIRLARELGVQGVVLGA 94 (241)
T ss_pred cCCCCcccChHHHHHHHHHHHHHHHcCCCcEEEee
Confidence 35899999888899999999999999999887764
No 284
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=32.97 E-value=1.4e+02 Score=26.27 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=36.0
Q ss_pred cccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 137 EFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 137 eiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
++|--=..|+.| ++.+.++|.+.|+. +.|..+ ++.++|+..++.|+++-+-
T Consensus 62 dvHLMv~~p~~~---i~~~~~~gad~i~~-----H~Ea~~---------~~~~~l~~ik~~g~k~Gla 112 (220)
T PRK08883 62 DVHLMVKPVDRI---IPDFAKAGASMITF-----HVEASE---------HVDRTLQLIKEHGCQAGVV 112 (220)
T ss_pred EEEeccCCHHHH---HHHHHHhCCCEEEE-----cccCcc---------cHHHHHHHHHHcCCcEEEE
Confidence 455533346554 56777899999998 445432 6889999999999986543
No 285
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=32.91 E-value=59 Score=25.37 Aligned_cols=44 Identities=16% Similarity=0.354 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 148 WREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 148 W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
-+|-.+.+++.+++.|-+..+|.-+| .+.++++.++++|+.|-+
T Consensus 130 ~~~l~~~~~~~~id~v~ial~~~~~~------------~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 130 LDDLPELVREHDIDEVIIALPWSEEE------------QIKRIIEELENHGVRVRV 173 (175)
T ss_dssp GGGHHHHHHHHT--EEEE--TTS-HH------------HHHHHHHHHHTTT-EEEE
T ss_pred HHHHHHHHHhCCCCEEEEEcCccCHH------------HHHHHHHHHHhCCCEEEE
Confidence 35556666777777776666654433 667788888888877654
No 286
>PLN02428 lipoic acid synthase
Probab=32.86 E-value=1.1e+02 Score=29.25 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=37.1
Q ss_pred CHhHHHHHHHHHHHc--CCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccccc
Q psy13824 144 PQERWREILRKIRSA--GLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWT 210 (226)
Q Consensus 144 P~e~W~drL~kmKaa--GlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIc 210 (226)
..+.|-+.++.+|+. |+. +.+++.=.+-|.++ |+.+.++.+++.|+.++ -+|.|+.
T Consensus 229 sye~~Le~L~~ak~~~pGi~-tkSg~MvGLGET~E---------dv~e~l~~Lrelgvd~v-tigqyL~ 286 (349)
T PLN02428 229 GYKQSLDVLKHAKESKPGLL-TKTSIMLGLGETDE---------EVVQTMEDLRAAGVDVV-TFGQYLR 286 (349)
T ss_pred CHHHHHHHHHHHHHhCCCCe-EEEeEEEecCCCHH---------HHHHHHHHHHHcCCCEE-eeccccC
Confidence 356677777777888 877 44454434445554 77888888888888753 4666653
No 287
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=32.77 E-value=18 Score=31.75 Aligned_cols=14 Identities=36% Similarity=0.949 Sum_probs=13.5
Q ss_pred cCcccCCCCeeeee
Q psy13824 169 WSSHEAQPGTYSFD 182 (226)
Q Consensus 169 WnlHEPe~G~FDFs 182 (226)
|...||++|+|||+
T Consensus 3 W~~~ep~~G~~n~~ 16 (254)
T smart00633 3 WDSTEPSRGQFNFS 16 (254)
T ss_pred cccccCCCCccChH
Confidence 88999999999999
No 288
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=32.67 E-value=1.6e+02 Score=29.37 Aligned_cols=54 Identities=9% Similarity=0.171 Sum_probs=42.8
Q ss_pred ccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 138 FHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 138 iHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
+-|...|.+..+.-++++++.|+.++++.-..| |.. ++...++.+++.|..|.+
T Consensus 97 vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~ln---------d~~---n~~~ai~~ak~~G~~~~~ 150 (468)
T PRK12581 97 LGYRHYADDIVDKFISLSAQNGIDVFRIFDALN---------DPR---NIQQALRAVKKTGKEAQL 150 (468)
T ss_pred cCccCCcchHHHHHHHHHHHCCCCEEEEcccCC---------CHH---HHHHHHHHHHHcCCEEEE
Confidence 455566777777789999999999999977655 233 788899999999998764
No 289
>KOG1412|consensus
Probab=32.62 E-value=95 Score=30.37 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=38.3
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCe
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
....|+..-.-.+.+||-||.+|-+|+.-+..- |++.|+...+..--.
T Consensus 131 SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~---------d~e~~Lsdl~~APe~ 178 (410)
T KOG1412|consen 131 SNPTWENHHAIFEKAGFTTVATYPYWDAENKCV---------DLEGFLSDLESAPEG 178 (410)
T ss_pred cCCchhHHHHHHHHcCCceeeeeeeecCCCcee---------cHHHHHHHHhhCCCC
Confidence 446799999999999999999999999766432 677787777765555
No 290
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=32.53 E-value=1.4e+02 Score=27.70 Aligned_cols=63 Identities=11% Similarity=0.224 Sum_probs=42.9
Q ss_pred CeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEE--EEeeecCccc-CCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 128 GRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAV--STYVGWSSHE-AQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 128 Gkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV--~tyV~WnlHE-Pe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
|+|.+.+|==+|+ +..++++++.|+.+| .. +.| |+.+..=|+-.--=.+..+.|++.|+.||=
T Consensus 31 ~~~vy~lG~iVHN--------~~Vv~~L~~~Gv~~v~~~~-----~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~viD 96 (281)
T PRK12360 31 GKKIYTLGPLIHN--------NQVVSDLEEKGVKTIEESE-----IDSLKEGDVVIIRSHGVSKKVYKDLKDKGLEIID 96 (281)
T ss_pred CCCeEEecCCcCC--------HHHHHHHHHCcCEEECcCc-----hhhCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEe
Confidence 6788889888999 888999999999999 43 122 223355554221224567777777777663
No 291
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=32.52 E-value=94 Score=26.33 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=53.9
Q ss_pred ECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHH-HHHHHcCCeEEEe
Q psy13824 126 MDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFM-RLAAEEGLYVLLY 204 (226)
Q Consensus 126 ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI-~lA~e~GL~VILR 204 (226)
-++.++.|+.+++|. .+.....+.-++.+++.|+..-...++| -||.|+-- -.+ .+++..+...++.
T Consensus 10 ~~~~riaIV~s~~n~-~i~~~l~~ga~~~l~~~gv~~~~i~v~~-----VPGa~EiP------~a~~~l~~~~~~DavIa 77 (154)
T PRK00061 10 AKGLRIGIVVARFND-FITDALLEGALDALKRHGVSEENIDVVR-----VPGAFEIP------LAAKKLAESGKYDAVIA 77 (154)
T ss_pred CCCCEEEEEEecCcH-HHHHHHHHHHHHHHHHcCCCccceEEEE-----CCCHHHHH------HHHHHHHHcCCCCEEEE
Confidence 566788999998887 6667788999999999997544444444 58877654 333 3344445667777
Q ss_pred eccccccccC
Q psy13824 205 SGFSWTMKSS 214 (226)
Q Consensus 205 pGPYIcaesT 214 (226)
.|--|.|++.
T Consensus 78 lG~VIrG~T~ 87 (154)
T PRK00061 78 LGAVIRGETP 87 (154)
T ss_pred EeeEEcCCCc
Confidence 8888877653
No 292
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=32.36 E-value=49 Score=28.17 Aligned_cols=32 Identities=19% Similarity=0.107 Sum_probs=25.6
Q ss_pred CCeeeeeCcccHHHHHHHHHHcCCeEEE-eecc
Q psy13824 176 PGTYSFDGHRDVEYFMRLAAEEGLYVLL-YSGF 207 (226)
Q Consensus 176 ~G~FDFsG~~DLd~FI~lA~e~GL~VIL-RpGP 207 (226)
.-..=|||+.|+...++.|++.|.+|++ ..+|
T Consensus 112 D~ivl~SgD~DF~p~v~~~~~~G~rv~v~~~~~ 144 (181)
T COG1432 112 DTIVLFSGDGDFIPLVEAARDKGKRVEVAGIEP 144 (181)
T ss_pred CEEEEEcCCccHHHHHHHHHHcCCEEEEEecCC
Confidence 3455599999999999999999999765 3344
No 293
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=32.33 E-value=1e+02 Score=30.84 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=41.2
Q ss_pred cCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeE
Q psy13824 139 HYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYV 201 (226)
Q Consensus 139 HYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~V 201 (226)
-|...|.+..+.++++..++|++.+++..+-|-. ++++..++.+++.|..+
T Consensus 90 Gy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv------------~nl~~ai~~vk~ag~~~ 140 (499)
T PRK12330 90 GYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP------------RNLEHAMKAVKKVGKHA 140 (499)
T ss_pred CccCcchhHHHHHHHHHHHcCCCEEEEEecCChH------------HHHHHHHHHHHHhCCeE
Confidence 3666788899999999999999999998886655 36777777777777765
No 294
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=32.17 E-value=2e+02 Score=25.71 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=46.8
Q ss_pred ECCeeeEEeeccccCCCCC-------------HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHH
Q psy13824 126 MDGRPFRFVSGEFHYFRSP-------------QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMR 192 (226)
Q Consensus 126 ldGkpf~ilgGeiHYfRvP-------------~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~ 192 (226)
++.-+..++.+++-|.+.. .++.++.++++++.|.|.|-+. ++. + +..++
T Consensus 84 i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~--k~I----------~-----~~a~~ 146 (261)
T cd03334 84 IKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVE--KSV----------S-----RIAQD 146 (261)
T ss_pred cCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEC--Ccc----------C-----HHHHH
Confidence 3445678888888887644 6788889999999999988661 222 1 34567
Q ss_pred HHHHcCCeEEEeecc
Q psy13824 193 LAAEEGLYVLLYSGF 207 (226)
Q Consensus 193 lA~e~GL~VILRpGP 207 (226)
...++|+.++-|...
T Consensus 147 ~l~k~gI~~v~~v~~ 161 (261)
T cd03334 147 LLLEAGITLVLNVKP 161 (261)
T ss_pred HHHHCCCEEEEecCH
Confidence 777778887777654
No 295
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=32.12 E-value=79 Score=31.59 Aligned_cols=68 Identities=4% Similarity=0.019 Sum_probs=42.2
Q ss_pred CeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeee-cCcccCC-CCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 128 GRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVG-WSSHEAQ-PGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 128 Gkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~-WnlHEPe-~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
|++.+++|==+|+ +...++++++|+.+|...-- =.+.+-. .+..=+.-.--=.+..+.+++.|+.||=
T Consensus 136 ~~~Iy~lgeIIHN--------p~Vv~~L~~~GV~~I~~~~~~~~~~~v~~gdvVIirAHGvs~~~~~~l~~kg~~IVD 205 (460)
T PLN02821 136 DEKLWITNEIIHN--------PTVNKRLEEMNVQFIEVEEGGKDFSVVGEGDVVILPAFGASVEEMQTLNDKNVQIVD 205 (460)
T ss_pred CCCeEEecCCccC--------HHHHHHHHHCCCEEecccccccccccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEe
Confidence 5789999988999 88899999999999863100 0011111 1233332111114677788888888763
No 296
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=31.98 E-value=45 Score=31.54 Aligned_cols=71 Identities=18% Similarity=0.125 Sum_probs=52.0
Q ss_pred eeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccc
Q psy13824 134 VSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFS 208 (226)
Q Consensus 134 lgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPY 208 (226)
++..+. .|.|.-.=.=.-+++|+.|-+.|-.-|+|..-||+-.+=.-. -++++...|+.+||-.+|-|=-|
T Consensus 100 yd~t~~-~rlp~l~~~isa~riK~~G~~avK~Lvy~~~D~~e~neqk~a---~ierigsec~aedi~f~lE~lty 170 (306)
T COG3684 100 YDNTIP-VRLPDLLRKISAKRIKEDGGDAVKFLVYYRSDEDEINEQKLA---YIERIGSECHAEDLPFFLEPLTY 170 (306)
T ss_pred CCCCCC-ccchhhhhhhCHHHHHHhcccceEEEEEEcCCchHHhHHHHH---HHHHHHHHhhhcCCceeEeeeec
Confidence 334444 366644434467899999999999999999999943333333 67899999999999988876444
No 297
>PRK05586 biotin carboxylase; Validated
Probab=31.96 E-value=1.7e+02 Score=27.84 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCcccC---CCCeeee-eC------cccHHHHHHHHHHcCCeEEEeec
Q psy13824 148 WREILRKIRSAGLNAVSTYVGWSSHEA---QPGTYSF-DG------HRDVEYFMRLAAEEGLYVLLYSG 206 (226)
Q Consensus 148 W~drL~kmKaaGlNTV~tyV~WnlHEP---e~G~FDF-sG------~~DLd~FI~lA~e~GL~VILRpG 206 (226)
=...++.+|++|+.+|.+|-.=+..-| ...++.. +. -.|++++++.|.+++..+|. ||
T Consensus 14 ~~~~~~aa~~lG~~~v~v~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~~~~~~~d~i~-p~ 81 (447)
T PRK05586 14 AVRIIRACREMGIETVAVYSEADKDALHVQLADEAVCIGPASSKDSYLNIQNIISATVLTGAQAIH-PG 81 (447)
T ss_pred HHHHHHHHHHcCCcEEEEcChHhccCcchhhCCEEEEeCCCChhhcccCHHHHHHHHHHcCCCEEE-cC
Confidence 367788999999999998643111111 1222211 11 13678999999999999766 44
No 298
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=31.59 E-value=1.3e+02 Score=26.88 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=38.4
Q ss_pred CCCC-HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEE
Q psy13824 141 FRSP-QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 141 fRvP-~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VI 202 (226)
.|.+ |.-=.+-++.|+++|+..+-. | .|+--+= |-++++++|.++||.|+
T Consensus 163 ~R~DlPtIG~~Tv~~~~~ag~~~lav-------e--Ag~tl~l---d~~~~i~~Ad~~gi~i~ 213 (214)
T PF06230_consen 163 LRFDLPTIGPDTVENAAEAGLAGLAV-------E--AGKTLIL---DREEVIALADKAGIFIV 213 (214)
T ss_pred ccccccccCHHHHHHHHHcCCeEEEE-------e--cCcEEEe---cHHHHHHHHHHcCCEEe
Confidence 3555 555567889999999999887 3 4444444 77899999999999875
No 299
>PRK00870 haloalkane dehalogenase; Provisional
Probab=31.56 E-value=2.1e+02 Score=24.79 Aligned_cols=66 Identities=18% Similarity=0.296 Sum_probs=39.3
Q ss_pred CeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcc-cCCC--CeeeeeCcccHHHHHHHHHHcCC
Q psy13824 128 GRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSH-EAQP--GTYSFDGHRDVEYFMRLAAEEGL 199 (226)
Q Consensus 128 Gkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlH-EPe~--G~FDFsG~~DLd~FI~lA~e~GL 199 (226)
|++.+++-|- -.....|...++.+.+.|.+.+....+---. .+.+ ..|+++. ..+.+.++.++.|+
T Consensus 46 ~~~lvliHG~----~~~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~~~~~~~~~~--~a~~l~~~l~~l~~ 114 (302)
T PRK00870 46 GPPVLLLHGE----PSWSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKPTRREDYTYAR--HVEWMRSWFEQLDL 114 (302)
T ss_pred CCEEEEECCC----CCchhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCcccCCHHH--HHHHHHHHHHHcCC
Confidence 5667666563 3446679998888988899998887763222 2222 3466652 22333444445555
No 300
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=31.29 E-value=1.3e+02 Score=26.57 Aligned_cols=63 Identities=29% Similarity=0.400 Sum_probs=38.1
Q ss_pred eccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCc----------ccCCCCeeeeeCcccHHHHHHHHHHcCCeE
Q psy13824 135 SGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSS----------HEAQPGTYSFDGHRDVEYFMRLAAEEGLYV 201 (226)
Q Consensus 135 gGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~Wnl----------HEPe~G~FDFsG~~DLd~FI~lA~e~GL~V 201 (226)
|++...=+||.++|.+.++.+.+-|.+.|-+ +.- -+..++. +..|..+|.+++.+.++..+.|
T Consensus 187 gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~---~g~~~e~~~~~~i~~~~~~~-~l~g~~sL~el~ali~~a~l~I 259 (319)
T TIGR02193 187 ATSRDDKTWPEERWRELARLLLARGLQIVLP---WGNDAEKQRAERIAEALPGA-VVLPKMSLAEVAALLAGADAVV 259 (319)
T ss_pred CCCcccCCCCHHHHHHHHHHHHHCCCeEEEe---CCCHHHHHHHHHHHhhCCCC-eecCCCCHHHHHHHHHcCCEEE
Confidence 3443334799999999999997778776644 221 1111223 6777777777766544444433
No 301
>PLN02389 biotin synthase
Probab=31.22 E-value=1.4e+02 Score=28.53 Aligned_cols=61 Identities=13% Similarity=0.203 Sum_probs=43.2
Q ss_pred CCCCCHhHHHHHHHHHHHcCCCEEEEeeecC--cccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 140 YFRSPQERWREILRKIRSAGLNAVSTYVGWS--SHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 140 YfRvP~e~W~drL~kmKaaGlNTV~tyV~Wn--lHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
|...+++...+..+++++.|+..+..-..|. .+||. +|+ ++.++++.+++.++.|.+..|.
T Consensus 113 ~~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~----~~e---~i~eiir~ik~~~l~i~~s~G~ 175 (379)
T PLN02389 113 QKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKT----NFN---QILEYVKEIRGMGMEVCCTLGM 175 (379)
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChh----HHH---HHHHHHHHHhcCCcEEEECCCC
Confidence 3456788888999999999999887755563 22222 344 6777888888888887766553
No 302
>KOG3625|consensus
Probab=31.21 E-value=58 Score=35.92 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=37.6
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEee------------ecCcc------cCCCCeeeeeCcccHHHHHHHHHH
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYV------------GWSSH------EAQPGTYSFDGHRDVEYFMRLAAE 196 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV------------~WnlH------EPe~G~FDFsG~~DLd~FI~lA~e 196 (226)
|-+.|+.+|+++|+.|-|+|...= .-+.+ ....++|.|+ |+.++++.+++
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~e---DV~~lV~~l~r 207 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFE---DVGQLVEKLKR 207 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHH---HHHHHHHHHHh
Confidence 669999999999999999997531 11222 2334688998 99999998865
No 303
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=31.10 E-value=1.8e+02 Score=22.73 Aligned_cols=66 Identities=15% Similarity=0.289 Sum_probs=37.0
Q ss_pred CeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeee-cCcccCCCCeeeeeCcccHHHHHHHHHHcCC
Q psy13824 128 GRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVG-WSSHEAQPGTYSFDGHRDVEYFMRLAAEEGL 199 (226)
Q Consensus 128 Gkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~-WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL 199 (226)
++|.+++. |-.-...+.|+..++.++ .|++.+....+ ....+..+..+++.. ..+.+.+..++.+.
T Consensus 12 ~~~~li~~---hg~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~~~~~~~--~~~~~~~~i~~~~~ 78 (251)
T TIGR02427 12 GAPVLVFI---NSLGTDLRMWDPVLPALT-PDFRVLRYDKRGHGLSDAPEGPYSIED--LADDVLALLDHLGI 78 (251)
T ss_pred CCCeEEEE---cCcccchhhHHHHHHHhh-cccEEEEecCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHhCC
Confidence 56655543 334455678888887776 47877777665 444444445556552 22334444444444
No 304
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=31.10 E-value=65 Score=30.01 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=31.4
Q ss_pred EEECCeeeEEe--eccccCCCCCHhH--HHHHHHHHHHcCCCEEEE
Q psy13824 124 FRMDGRPFRFV--SGEFHYFRSPQER--WREILRKIRSAGLNAVST 165 (226)
Q Consensus 124 F~ldGkpf~il--gGeiHYfRvP~e~--W~drL~kmKaaGlNTV~t 165 (226)
-.++|+++..+ -|..|+. ++.. .+.-+..||++|+.+|-.
T Consensus 42 G~l~g~~v~~l~RhGr~H~y--~p~~i~~rAni~alk~lGv~~ii~ 85 (290)
T PRK07432 42 GTLDGTRVAFLARHGRNHTL--LPTELPFRANIYAMKQLGVEYLIS 85 (290)
T ss_pred EEECCEEEEEEECCCCCCcc--ChhhcCcHHHHHHHHHcCCCEEEE
Confidence 35799999999 9999986 4444 455599999999986644
No 305
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=30.70 E-value=1.7e+02 Score=24.82 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=44.8
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeee--cCcccCCCCeeeeeC-cccHHHHHHHHHHcCCeEEEee----ccccc
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVG--WSSHEAQPGTYSFDG-HRDVEYFMRLAAEEGLYVLLYS----GFSWT 210 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~--WnlHEPe~G~FDFsG-~~DLd~FI~lA~e~GL~VILRp----GPYIc 210 (226)
.+++++.+..++++|..+|.+... +...++.+....... ...+.++.+.|++.|+.+-+-+ |.+++
T Consensus 83 ~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l~~e~~~~~~~~~~ 155 (274)
T COG1082 83 LEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEELGIGLALENHHHPGNVVE 155 (274)
T ss_pred HHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCceEEeecCCccceee
Confidence 567888999999999998887764 443332212222111 1367888999999999988876 55555
No 306
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=30.69 E-value=1.8e+02 Score=30.65 Aligned_cols=80 Identities=14% Similarity=0.202 Sum_probs=53.5
Q ss_pred eeEEeeccccCCCCC---HhHHHHHHHHHHHcCCC--EEEEee-ecCcccCCCCeeeeeCc--ccHHHHHHHHHHcCCeE
Q psy13824 130 PFRFVSGEFHYFRSP---QERWREILRKIRSAGLN--AVSTYV-GWSSHEAQPGTYSFDGH--RDVEYFMRLAAEEGLYV 201 (226)
Q Consensus 130 pf~ilgGeiHYfRvP---~e~W~drL~kmKaaGlN--TV~tyV-~WnlHEPe~G~FDFsG~--~DLd~FI~lA~e~GL~V 201 (226)
|..-+| ..|-+|.. .+...+.++.+|+-.+- .+...+ +|.- .-+.|.|.-. -|.+++++..++.|+++
T Consensus 262 P~Wa~G-~~~~~~~~~~~e~~v~~~i~~~~~~~IP~d~~~lD~~~~~~---~~~~F~wd~~~FP~pk~mi~~l~~~Gikl 337 (772)
T COG1501 262 PKWALG-WLWTSRYTYYDEDEVLEFIDEMRERDIPLDVFVLDIDFWMD---NWGDFTWDPDRFPDPKQMIAELHEKGIKL 337 (772)
T ss_pred CceecC-CCceeccccccHHHHHHHHhhcccccCcceEEEEeehhhhc---cccceEECcccCCCHHHHHHHHHhcCceE
Confidence 445566 44444533 55666677777776664 333334 2443 4555655432 48999999999999999
Q ss_pred EEeecccccccc
Q psy13824 202 LLYSGFSWTMKS 213 (226)
Q Consensus 202 ILRpGPYIcaes 213 (226)
++..=|||..++
T Consensus 338 ~~~i~P~i~~d~ 349 (772)
T COG1501 338 IVIINPYIKQDS 349 (772)
T ss_pred EEEeccccccCC
Confidence 999999998755
No 307
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=30.59 E-value=73 Score=27.28 Aligned_cols=53 Identities=21% Similarity=0.242 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCCEEEEeeecC-cccCC---CC-eeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 149 REILRKIRSAGLNAVSTYVGWS-SHEAQ---PG-TYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~Wn-lHEPe---~G-~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
++.+++++++|+..|++.+.-+ .|... .+ .-+|+ .....++.|++.|+.|.+-
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~---~~~~~i~~a~~~G~~v~~~ 134 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLE---NAEEAIEAAKEAGLEVEGS 134 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHH---HHHHHHHHHHHCCCeEEEE
Confidence 7788888888888888887633 22211 01 11233 5667778888888877663
No 308
>PLN03244 alpha-amylase; Provisional
Probab=30.53 E-value=36 Score=36.43 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=31.2
Q ss_pred CEEEEeee---cCcccCCCCeee-ee--------------CcccHHHHHHHHHHcCCeEEEee
Q psy13824 161 NAVSTYVG---WSSHEAQPGTYS-FD--------------GHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 161 NTV~tyV~---WnlHEPe~G~FD-Fs--------------G~~DLd~FI~lA~e~GL~VILRp 205 (226)
..+++|.. =+..||.=|.|. |. +..||.+||+.|+++||.|||-.
T Consensus 399 ~~lrIYE~HvGms~~e~kv~ty~eF~~~vt~fFApssRYGTPeDLK~LVD~aH~~GI~VILDv 461 (872)
T PLN03244 399 ESLRIYECHVGISGSEPKISSFEEFTEKVTNFFAASSRYGTPDDFKRLVDEAHGLGLLVFLDI 461 (872)
T ss_pred CCceEEEEEeeecCCCCCcccHHHHhhccCcccccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 44555532 344566666663 33 23689999999999999999973
No 309
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=30.46 E-value=1.3e+02 Score=27.13 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=30.4
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeE
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYV 201 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~V 201 (226)
-+...+-+++++++|+..|.+...-. +|.-| + ++.++++.+++.|+.|
T Consensus 143 ~~~vl~~i~~~~~~g~~~v~i~~vv~-----~g~n~-~---ei~~l~~~~~~~gv~v 190 (331)
T PRK00164 143 LDQVLAGIDAALAAGLTPVKVNAVLM-----KGVND-D---EIPDLLEWAKDRGIQL 190 (331)
T ss_pred HHHHHHHHHHHHHCCCCcEEEEEEEE-----CCCCH-H---HHHHHHHHHHhCCCeE
Confidence 45566667777788885565543211 12111 2 7889999999988764
No 310
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=30.41 E-value=75 Score=29.55 Aligned_cols=39 Identities=23% Similarity=0.554 Sum_probs=31.1
Q ss_pred EECCeeeEEee--ccccCCCCCHhH--HHHHHHHHHHcCCCEEEE
Q psy13824 125 RMDGRPFRFVS--GEFHYFRSPQER--WREILRKIRSAGLNAVST 165 (226)
Q Consensus 125 ~ldGkpf~ilg--GeiHYfRvP~e~--W~drL~kmKaaGlNTV~t 165 (226)
.++|+++.++. |..|+. |+.. .+.-+..||++|+.+|-.
T Consensus 43 ~l~G~~V~~l~RhGr~H~y--~p~~i~~rAni~alk~lGv~~ii~ 85 (289)
T PRK08931 43 RLGGVPMVFLPRHGRGHRL--SPSDINYRANIDALKRAGVTDIVS 85 (289)
T ss_pred EECCEEEEEEeCCCCCCcc--ChHHcccHHHHHHHHHcCCCEEEE
Confidence 47999999996 999986 4444 667899999999986643
No 311
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=30.36 E-value=1.4e+02 Score=27.57 Aligned_cols=65 Identities=12% Similarity=0.227 Sum_probs=42.0
Q ss_pred CeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeec
Q psy13824 128 GRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSG 206 (226)
Q Consensus 128 Gkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpG 206 (226)
|++.+++.|...+ ...+++..+.+++.|++.... ...+++| +.+ ++++.++.+++.+--+|+-.|
T Consensus 22 ~~r~liv~d~~~~----~~~~~~v~~~l~~~~~~~~~~----~~~~~~p---~~~---~v~~~~~~~~~~~~d~iiavG 86 (345)
T cd08171 22 GKKVVVIGGKTAL----AAAKDKIKAALEQSGIEITDF----IWYGGES---TYE---NVERLKKNPAVQEADMIFAVG 86 (345)
T ss_pred CCEEEEEeCHHHH----HHHHHHHHHHHHHCCCeEEEE----EecCCCC---CHH---HHHHHHHHHhhcCCCEEEEeC
Confidence 4566666654333 234666667778889865432 2333444 344 788999999999998888766
No 312
>PRK09248 putative hydrolase; Validated
Probab=30.33 E-value=1.7e+02 Score=25.45 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=7.6
Q ss_pred HHHHHHHHHcCCeEEE
Q psy13824 188 EYFMRLAAEEGLYVLL 203 (226)
Q Consensus 188 d~FI~lA~e~GL~VIL 203 (226)
.+++++|.+.|+.+++
T Consensus 175 ~~~~~~~~~~g~~~~~ 190 (246)
T PRK09248 175 RAIAALCKKAGVWVAL 190 (246)
T ss_pred HHHHHHHHHcCCeEEE
Confidence 3444555555544443
No 313
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=30.05 E-value=78 Score=30.39 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCCEEEEeee-cC--cccCCCCeeeeeCcccHHHHHHHHHHcCC
Q psy13824 149 REILRKIRSAGLNAVSTYVG-WS--SHEAQPGTYSFDGHRDVEYFMRLAAEEGL 199 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~-Wn--lHEPe~G~FDFsG~~DLd~FI~lA~e~GL 199 (226)
++.++.||++|+|.|+++|- =+ .+..-.+..++. ++.+.++.+++.|+
T Consensus 151 ~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~---~~~~ai~~l~~~G~ 201 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFE---FTFALVEAARELGF 201 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCC
Confidence 46777888888888877652 11 111112223444 66677777777776
No 314
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=29.98 E-value=1.6e+02 Score=27.33 Aligned_cols=67 Identities=13% Similarity=0.224 Sum_probs=43.9
Q ss_pred CeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeec
Q psy13824 128 GRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSG 206 (226)
Q Consensus 128 Gkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpG 206 (226)
|++.+++.|..-+.+. ..+++..+.+++.|++.. .+.-.||.| +.+ ++++.++.+++.+.-+|+-.|
T Consensus 25 g~r~lvVt~~~~~~~~--g~~~~v~~~L~~~g~~~~----~~~~v~~~p---~~~---~v~~~~~~~~~~~~D~IIavG 91 (357)
T cd08181 25 GKRALIVTGKSSAKKN--GSLDDVTKALEELGIEYE----IFDEVEENP---SLE---TIMEAVEIAKKFNADFVIGIG 91 (357)
T ss_pred CCEEEEEeCCchHhhc--CcHHHHHHHHHHcCCeEE----EeCCCCCCc---CHH---HHHHHHHHHHhcCCCEEEEeC
Confidence 4677777765543222 234556666788888532 235556665 334 788899999999999888665
No 315
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=29.91 E-value=1e+02 Score=24.36 Aligned_cols=58 Identities=22% Similarity=0.343 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCCEEEEeee---cCcccCCCCeeeeeC-------cccHHHHHHHHHHcCCeEEEeec
Q psy13824 148 WREILRKIRSAGLNAVSTYVG---WSSHEAQPGTYSFDG-------HRDVEYFMRLAAEEGLYVLLYSG 206 (226)
Q Consensus 148 W~drL~kmKaaGlNTV~tyV~---WnlHEPe~G~FDFsG-------~~DLd~FI~lA~e~GL~VILRpG 206 (226)
=-+.++.+|++|+.||-+|-. =+.|-....+..|.+ -.+.+.+++.|+++|.-.+. ||
T Consensus 14 a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~-pG 81 (110)
T PF00289_consen 14 AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIH-PG 81 (110)
T ss_dssp HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEE-ST
T ss_pred HHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCcccc-cc
Confidence 456789999999999999742 122222223333332 27999999999999987665 44
No 316
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=29.72 E-value=51 Score=31.55 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=38.3
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeee-cC------cccCCCCeeeeeCcccHHHHHHHHHHcCCe
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVG-WS------SHEAQPGTYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~-Wn------lHEPe~G~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
.-.+++.++++|++|++++..+-. =. .|- |++=+++ .--+.++.|++.||.
T Consensus 157 ~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~--p~K~~~~---~wle~~~~Ah~lGI~ 214 (370)
T COG1060 157 GLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHC--PPKKSPE---EWLEIHERAHRLGIP 214 (370)
T ss_pred CCCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhC--CCCCCHH---HHHHHHHHHHHcCCC
Confidence 445788899999999998877632 22 244 6666776 456799999999998
No 317
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=29.59 E-value=1.3e+02 Score=30.76 Aligned_cols=54 Identities=6% Similarity=0.084 Sum_probs=42.6
Q ss_pred ccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 138 FHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 138 iHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
.-|-..|.+..+..++++++.|+..+|+.-..|..+ ++...++.+++.|..+..
T Consensus 88 vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~------------n~~~~i~~~k~~G~~~~~ 141 (596)
T PRK14042 88 LGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDAR------------NLKVAIDAIKSHKKHAQG 141 (596)
T ss_pred cccccCChHHHHHHHHHHHHcCCCEEEEcccCcchH------------HHHHHHHHHHHcCCEEEE
Confidence 345567889999999999999999999976666443 677788888888887653
No 318
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=29.52 E-value=1.1e+02 Score=29.25 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccc
Q psy13824 150 EILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFS 208 (226)
Q Consensus 150 drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPY 208 (226)
=...++|++|++.|-+ -|--++-.|.=+ +..+..=++.|.++||.+|+|.|=-
T Consensus 86 VS~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~i~~Kv~~al~~gl~pIvCiGE~ 138 (355)
T PRK14905 86 ISPLMLKELGIELVMI-----GHSERRHVLKET-DQEENEKVLAALKHGFITLLCIGET 138 (355)
T ss_pred CCHHHHHHcCCCEEEE-----CcccccCccccc-HHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 3456889999999998 343333333222 2234466778999999999998853
No 319
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=29.45 E-value=1.3e+02 Score=26.61 Aligned_cols=61 Identities=16% Similarity=0.050 Sum_probs=39.5
Q ss_pred cccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCe--EEEeeccccc
Q psy13824 137 EFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLY--VLLYSGFSWT 210 (226)
Q Consensus 137 eiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~--VILRpGPYIc 210 (226)
+.|+..-+.+.=-++|++=.++|.+.+.|-. .||.+ .+.+|++.+++.|+. |++..=|...
T Consensus 138 e~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~----------~fd~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s 200 (274)
T cd00537 138 EGHPEAPSLEEDIKRLKRKVDAGADFIITQL----------FFDND---AFLRFVDRCRAAGITVPIIPGIMPLTS 200 (274)
T ss_pred CcCCCCCCHHHHHHHHHHHHHCCCCEEeecc----------cccHH---HHHHHHHHHHHcCCCCCEEeeccccCC
Confidence 4444444344444555555568999999833 45555 888999999999854 6665555544
No 320
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=29.40 E-value=1.6e+02 Score=23.79 Aligned_cols=62 Identities=11% Similarity=0.024 Sum_probs=44.0
Q ss_pred HHHHHHHHcCC-CEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCe-EEEeeccccccccC
Q psy13824 150 EILRKIRSAGL-NAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLY-VLLYSGFSWTMKSS 214 (226)
Q Consensus 150 drL~kmKaaGl-NTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~-VILRpGPYIcaesT 214 (226)
.++.+|.+.|. +-. -+|.=....|.+|.=-- +.+++.+++.+++.++. ||+...|=+-||+|
T Consensus 10 ~Dv~~iE~~~~y~G~-Y~VL~G~ispl~gi~p~--~l~i~~L~~ri~~~~i~EVIlA~~pt~EGe~T 73 (112)
T cd01025 10 RDVLAIEESGEYRGL-YHVLGGLISPLDGIGPD--DLNIDKLLERIAKGQVKEVILATNPTVEGEAT 73 (112)
T ss_pred HHHHHHHhhCccceE-EEEeCCCcCCCCCCCcc--ccCHHHHHHHHhcCCCcEEEEecCCCchHHHH
Confidence 56677777774 443 44666666777764211 25888999999888888 89988888877766
No 321
>PRK08175 aminotransferase; Validated
Probab=29.35 E-value=90 Score=28.60 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=34.8
Q ss_pred HHHHHHHH-HHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 148 WREILRKI-RSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 148 W~drL~km-KaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
|.++++++ ++.+-++--+++. +-|.|.=-.++-+ .+++++++|+++|+.||.-
T Consensus 150 ~~~~l~~~l~~~~~~~~~v~i~-~p~NPtG~~~~~~---~~~~i~~~a~~~~i~ii~D 203 (395)
T PRK08175 150 FFNELERAIRESYPKPKMMILG-FPSNPTAQCVELE---FFEKVVALAKRYDVLVVHD 203 (395)
T ss_pred cHHHHHHHHhhccCCceEEEEe-CCCCCCCCCCCHH---HHHHHHHHHHHcCcEEEEe
Confidence 56666554 3333333333443 4577776667776 7889999999999998863
No 322
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=29.30 E-value=1.2e+02 Score=33.34 Aligned_cols=56 Identities=20% Similarity=0.398 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccCCCCe-----eee-------eCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEAQPGT-----YSF-------DGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEPe~G~-----FDF-------sG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
...++.+|++|+.+|.+|. +-..+.++. +-. +.-.|.+++++.|++++...|+ ||+
T Consensus 14 ~~iiraak~lGi~~v~v~s--d~d~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a~~~~idaIi-PG~ 81 (1201)
T TIGR02712 14 VRIIRTLRRMGIRSVAVYS--DADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAAKKTGAQAIH-PGY 81 (1201)
T ss_pred HHHHHHHHHcCCeEEEEEC--CCCCCccchhhCCEEEEcCCCCcccCCCCHHHHHHHHHHHCCCEEE-eCC
Confidence 5667889999999998875 222222222 111 1124889999999999998665 554
No 323
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=29.03 E-value=1.1e+02 Score=28.77 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCCEEEEeee-cC--c-ccCCC-C-eeeeeCcccHHHHHHHHHHcCCe
Q psy13824 149 REILRKIRSAGLNAVSTYVG-WS--S-HEAQP-G-TYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~-Wn--l-HEPe~-G-~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
++.++++|++|++.+..++- =+ . .+-.+ | ..+|+ +.-+.++.|++.|+.
T Consensus 163 ~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~---~rl~~i~~a~~aG~~ 217 (371)
T PRK09240 163 EEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFE---YRLETPERAGRAGIR 217 (371)
T ss_pred HHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHH---HHHHHHHHHHHcCCC
Confidence 56678999999999888652 11 1 11111 2 44555 667789999999985
No 324
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=29.00 E-value=1.7e+02 Score=22.85 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 147 RWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 147 ~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
.-++-++++++.|+.+|.+-- |.. +. ....+.+.+++.|+.|++.
T Consensus 17 ~~~e~v~~A~~~Gl~~i~iTD----H~~------~~---~~~~~~~~~~~~~i~vi~G 61 (175)
T PF02811_consen 17 SPEEYVEQAKEKGLDAIAITD----HNN------FA---GYPDFYKEAKKKGIKVIPG 61 (175)
T ss_dssp SHHHHHHHHHHTTESEEEEEE----ETT------TT---THHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHcCCCEEEEcC----Ccc------cc---cchHHHHHHHhcCCceEEe
Confidence 457888999999999888743 322 22 4577889999999998873
No 325
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=28.85 E-value=1.8e+02 Score=25.33 Aligned_cols=54 Identities=24% Similarity=0.347 Sum_probs=38.9
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccccc
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWT 210 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIc 210 (226)
.+.-...+++++++|+.++-. .|..+. ..+.+...+++++.|+.|+...|-+-.
T Consensus 31 ~~~~~~~~~~~~~~Gvttiv~----------~~~~~~--~~~~~~~~~~~~~~g~~v~~~~G~hp~ 84 (293)
T cd00530 31 VEAAKEELKRFRAHGGRTIVD----------ATPPGI--GRDVEKLAEVARATGVNIVAATGFYKD 84 (293)
T ss_pred HHHHHHHHHHHHHcCCCeEEE----------cCCccc--CcCHHHHHHHHHHhCCcEEEecccCCC
Confidence 456677889999999998844 221111 136788999999999998888886554
No 326
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=28.79 E-value=63 Score=27.65 Aligned_cols=64 Identities=22% Similarity=0.211 Sum_probs=40.2
Q ss_pred ccccCCCCC--HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHc-CCeEE-Eeeccc
Q psy13824 136 GEFHYFRSP--QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEE-GLYVL-LYSGFS 208 (226)
Q Consensus 136 GeiHYfRvP--~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~-GL~VI-LRpGPY 208 (226)
+++|.|.-+ .+.+.+.+++|++.|.+.+.+-+.=+- .+....|..+...+++. +..+| +..|+.
T Consensus 118 ~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~---------~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~ 185 (224)
T PF01487_consen 118 LSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANS---------PEDVLRLLRFTKEFREEPDIPVIAISMGEL 185 (224)
T ss_dssp EEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SS---------HHHHHHHHHHHHHHHHHTSSEEEEEEETGG
T ss_pred EEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCC---------HHHHHHHHHHHHHHhhccCCcEEEEEcCCC
Confidence 578977654 444999999999999999888553211 12223556666666654 67654 666664
No 327
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=28.76 E-value=67 Score=29.64 Aligned_cols=43 Identities=19% Similarity=0.168 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeE
Q psy13824 148 WREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYV 201 (226)
Q Consensus 148 W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~V 201 (226)
--+-++++++.|+.+.-..+.=. .+.. ++.++++++.+.|...
T Consensus 143 ~~~~i~~l~~~g~~v~i~~vv~~--------~N~~---~i~~~~~~~~~lgv~~ 185 (378)
T PRK05301 143 KLAVARLVKAHGYPLTLNAVIHR--------HNID---QIPRIIELAVELGADR 185 (378)
T ss_pred HHHHHHHHHHCCCceEEEEEeec--------CCHH---HHHHHHHHHHHcCCCE
Confidence 33455677777877544443311 1223 7788999999999874
No 328
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=28.70 E-value=1.9e+02 Score=22.62 Aligned_cols=51 Identities=29% Similarity=0.272 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCCEEEEeee-cCc--ccCCCCeeeeeCcccHHHHHHHHHHcC-CeEE
Q psy13824 149 REILRKIRSAGLNAVSTYVG-WSS--HEAQPGTYSFDGHRDVEYFMRLAAEEG-LYVL 202 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~-Wnl--HEPe~G~FDFsG~~DLd~FI~lA~e~G-L~VI 202 (226)
++.++.|+++|++.+.+.+- ++- ++.......++ ++.+.++.++++| +.|-
T Consensus 100 ~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~g~~~v~ 154 (216)
T smart00729 100 EELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVE---DVLEAVEKLREAGPIKVS 154 (216)
T ss_pred HHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHH---HHHHHHHHHHHhCCcceE
Confidence 57788888899888888876 543 33223334555 7788888888888 5543
No 329
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=28.70 E-value=55 Score=30.64 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.7
Q ss_pred CC-HhHHHHHHHHHHHcCCCEEEEee
Q psy13824 143 SP-QERWREILRKIRSAGLNAVSTYV 167 (226)
Q Consensus 143 vP-~e~W~drL~kmKaaGlNTV~tyV 167 (226)
.| .-.|+++|.-.|++||+-|+..|
T Consensus 14 lp~~~sW~erl~~AK~~GFDFvEmSv 39 (287)
T COG3623 14 LPNGFSWLERLALAKELGFDFVEMSV 39 (287)
T ss_pred ccCCCCHHHHHHHHHHcCCCeEEEec
Confidence 44 45699999999999999999866
No 330
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=28.63 E-value=1.1e+02 Score=28.07 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=11.1
Q ss_pred cHHHHHHHHHHcCCeE
Q psy13824 186 DVEYFMRLAAEEGLYV 201 (226)
Q Consensus 186 DLd~FI~lA~e~GL~V 201 (226)
++.++++.|++.|+.+
T Consensus 171 ei~~~~~~~~~~gi~~ 186 (329)
T PRK13361 171 EVLDLVEFCRERGLDI 186 (329)
T ss_pred HHHHHHHHHHhcCCeE
Confidence 5667777777777664
No 331
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=28.56 E-value=94 Score=28.48 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=31.6
Q ss_pred EECCeeeEEe--eccccCCCCCHhHHHHHHHHHHHcCCCEEEE
Q psy13824 125 RMDGRPFRFV--SGEFHYFRSPQERWREILRKIRSAGLNAVST 165 (226)
Q Consensus 125 ~ldGkpf~il--gGeiHYfRvP~e~W~drL~kmKaaGlNTV~t 165 (226)
.++|+++..+ -|..|+..-..-..+--+..||++|+.+|-.
T Consensus 44 ~l~g~~v~~l~RhGr~H~ye~~~i~~rani~alk~lGv~~ii~ 86 (264)
T PRK07823 44 EVGGRRVAFLPRHGRDHEFSPHTVPYRANMWALRALGVRRVFA 86 (264)
T ss_pred EECCEEEEEEeCCCCCCCcCCCCccchHHHHHHHHcCCCEEEE
Confidence 5899999999 9999975433222677788999999986654
No 332
>PRK15452 putative protease; Provisional
Probab=28.56 E-value=1e+02 Score=30.21 Aligned_cols=47 Identities=9% Similarity=-0.061 Sum_probs=23.0
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCe
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
.+..++.++..++.| +.+|+..|.. +.+ =++. .+.+.++.+.+.|.-
T Consensus 45 ~edl~eav~~ah~~g---~kvyvt~n~i-~~e--~el~---~~~~~l~~l~~~gvD 91 (443)
T PRK15452 45 HENLALGINEAHALG---KKFYVVVNIA-PHN--AKLK---TFIRDLEPVIAMKPD 91 (443)
T ss_pred HHHHHHHHHHHHHcC---CEEEEEecCc-CCH--HHHH---HHHHHHHHHHhCCCC
Confidence 355666666666666 3344444422 111 1122 445555666666666
No 333
>TIGR00653 GlnA glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation.
Probab=28.56 E-value=2.8e+02 Score=27.17 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=46.7
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCc-----------ccHHHHH-HHHHHcCCeEEEeeccccc
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGH-----------RDVEYFM-RLAAEEGLYVLLYSGFSWT 210 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~-----------~DLd~FI-~lA~e~GL~VILRpGPYIc 210 (226)
.+.-++..+.|.++|++.-.. .||-.||||.++=. .-+...| +.|+++|+.+-.-|=|+..
T Consensus 182 ~~~~~~i~~~l~~~Gi~v~~~-----~~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~ik~vA~~~G~~ATFmpKP~~~ 254 (460)
T TIGR00653 182 VDIRREMVLYLEQLGFDVEVH-----HHEVATGQHEIDFKFDTLLKTADDIQTYKYVVKNVARKHGKTATFMPKPLFG 254 (460)
T ss_pred HHHHHHHHHHHHHcCCCceee-----ecCcCCCceeEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEecccCCC
Confidence 456788889999999997777 89999999987521 1112233 4688899999999999876
No 334
>PLN02590 probable tyrosine decarboxylase
Probab=28.35 E-value=1.3e+02 Score=30.13 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=38.3
Q ss_pred CCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 141 FRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 141 fRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
+|+.++..++.+++-++.|..-+-+ =..-|.-+.....+|+++.++|+++|+|+.+-
T Consensus 267 ~~md~~~L~~~I~~d~~~g~~P~~V-------vaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVD 323 (539)
T PLN02590 267 YGMPPESLEEAISHDLAKGFIPFFI-------CATVGTTSSAAVDPLVPLGNIAKKYGIWLHVD 323 (539)
T ss_pred CcCCHHHHHHHHHHHHhcCCCcEEE-------EEEeCCCCCcccCCHHHHHHHHHHhCCeEEEe
Confidence 3666777777777777777542211 11245555555569999999999999998764
No 335
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=28.12 E-value=80 Score=29.16 Aligned_cols=18 Identities=33% Similarity=0.480 Sum_probs=8.8
Q ss_pred HHHHHHHHcCCCEEEEee
Q psy13824 150 EILRKIRSAGLNAVSTYV 167 (226)
Q Consensus 150 drL~kmKaaGlNTV~tyV 167 (226)
+.++.++++|+|.|+++|
T Consensus 100 e~l~~l~~~G~~rvsiGv 117 (374)
T PRK05799 100 EKLKILKSMGVNRLSIGL 117 (374)
T ss_pred HHHHHHHHcCCCEEEEEC
Confidence 344455555555554444
No 336
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=28.08 E-value=1.5e+02 Score=26.92 Aligned_cols=42 Identities=14% Similarity=0.341 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 148 WREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 148 W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
-++-+++++++|++.|.+. -+|- + ..+.+++.++++||..|+
T Consensus 108 ~e~F~~~~~~aGvdgviip-----DLP~------e---e~~~~~~~~~~~gi~~I~ 149 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIP-----DLPY------E---ESDYLISVCNLYNIELIL 149 (263)
T ss_pred HHHHHHHHHHcCCeEEEec-----CCCH------H---HHHHHHHHHHHcCCCEEE
Confidence 4667899999999999985 2332 2 567899999999999765
No 337
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.91 E-value=1.4e+02 Score=26.51 Aligned_cols=39 Identities=5% Similarity=-0.063 Sum_probs=19.5
Q ss_pred cCcccCCCCeeeeeCcccHHHHHHHHHHcCCe-EEEeeccc
Q psy13824 169 WSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLY-VLLYSGFS 208 (226)
Q Consensus 169 WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~-VILRpGPY 208 (226)
+|+--|.+...+-+ ..-+.+-|+.|++.|-. |++-||-+
T Consensus 73 iNlas~~~~~r~~s-v~~~~~~i~~A~~lga~~vv~H~G~~ 112 (274)
T TIGR00587 73 INLASPDEEKEEKS-LDVLDEELKRCELLGIMLYNFHPGSA 112 (274)
T ss_pred eecCCCCHHHHHHH-HHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45555544433332 12455556666666663 55555543
No 338
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=27.91 E-value=2.8e+02 Score=26.30 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=49.9
Q ss_pred ECCeeeEEeeccccCCCCCHhHHHHHHHHHHHc----CCCEEEEeeecCcccCCCCeeeeeC---cccHHHHHHHHHHcC
Q psy13824 126 MDGRPFRFVSGEFHYFRSPQERWREILRKIRSA----GLNAVSTYVGWSSHEAQPGTYSFDG---HRDVEYFMRLAAEEG 198 (226)
Q Consensus 126 ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaa----GlNTV~tyV~WnlHEPe~G~FDFsG---~~DLd~FI~lA~e~G 198 (226)
.+++|+++++|=.--+ .++.-.+.-+.+|+. |++.|+-..||-.....|+ .|.| ..-|+-+-+..++.|
T Consensus 12 ~~~~~~~lIAGPC~iE--s~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~--sFrG~G~eeGL~iL~~vk~~~g 87 (290)
T PLN03033 12 KAAEPFFLLAGPNVIE--SEEHILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSK--SFRGPGMAEGLKILEKVKVAYD 87 (290)
T ss_pred CCCCCeEEEecCChhc--CHHHHHHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHC
Confidence 3667888888844322 256677777788886 9999999999943333443 5655 345655666667789
Q ss_pred CeEEE
Q psy13824 199 LYVLL 203 (226)
Q Consensus 199 L~VIL 203 (226)
|.|+-
T Consensus 88 lpvvT 92 (290)
T PLN03033 88 LPIVT 92 (290)
T ss_pred CceEE
Confidence 98764
No 339
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=27.42 E-value=3.1e+02 Score=26.00 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=45.5
Q ss_pred CCCCCHhHHHHHHHHHHHcCCCEEEEeee--cCcccC----------------------CCCeeeeeCc-----ccHHHH
Q psy13824 140 YFRSPQERWREILRKIRSAGLNAVSTYVG--WSSHEA----------------------QPGTYSFDGH-----RDVEYF 190 (226)
Q Consensus 140 YfRvP~e~W~drL~kmKaaGlNTV~tyV~--WnlHEP----------------------e~G~FDFsG~-----~DLd~F 190 (226)
-|=++.+.+.+.++.+++.|++.+-+.+. .+...+ .....|+.|. .|++++
T Consensus 144 KFGi~~~~~~~~l~~~~~~~l~~~Gih~HiGS~~~~~~~~~~a~~~~~~~~~~~~~~g~~l~~ldiGGGf~~~~~~~~~~ 223 (394)
T cd06831 144 KFGTTLKNCRHLLECAKELDVQIVGVKFHVSSSCKEYQTYVHALSDARCVFDMAEEFGFKMNMLDIGGGFTGSEIQLEEV 223 (394)
T ss_pred CCCCCHHHHHHHHHHHHHCCCeEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEeCCCcCCCCCCHHHH
Confidence 45677888888888888888877665543 222211 1234455443 355544
Q ss_pred HHHHHH---------cCCeEEEeecccccccc
Q psy13824 191 MRLAAE---------EGLYVLLYSGFSWTMKS 213 (226)
Q Consensus 191 I~lA~e---------~GL~VILRpGPYIcaes 213 (226)
.+..++ .++.+|+-||-|+.|.+
T Consensus 224 ~~~i~~~l~~~~~~~~~~~li~EPGR~lva~a 255 (394)
T cd06831 224 NHVIRPLLDVYFPEGSGIQIIAEPGSYYVSSA 255 (394)
T ss_pred HHHHHHHHHHhcCcCCCCEEEEeCChhhhhcc
Confidence 333222 26899999999998754
No 340
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=27.41 E-value=2.5e+02 Score=26.29 Aligned_cols=69 Identities=20% Similarity=0.171 Sum_probs=47.7
Q ss_pred CeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccC-CCCeeeeeCcccHHHHHHHHHHcCCeEEEeec
Q psy13824 128 GRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEA-QPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSG 206 (226)
Q Consensus 128 Gkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEP-e~G~FDFsG~~DLd~FI~lA~e~GL~VILRpG 206 (226)
|+|.+.+|==+|+ ++.++++++.|+.+|.. ..|- +.+..=+.-.--=.+..+.|++.|+.||=..=
T Consensus 30 ~~~iytlG~iIHN--------~~vv~~L~~~GV~~v~~-----~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~viDaTC 96 (298)
T PRK01045 30 GAPIYVRHEIVHN--------RYVVERLEKKGAIFVEE-----LDEVPDGAIVIFSAHGVSPAVREEAKERGLTVIDATC 96 (298)
T ss_pred CCCeEEEecCccC--------HHHHHHHHHCCCEEecC-----cccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEeCCC
Confidence 5788889999999 78999999999999973 3332 24455554221225677888888888875433
Q ss_pred ccc
Q psy13824 207 FSW 209 (226)
Q Consensus 207 PYI 209 (226)
||+
T Consensus 97 P~V 99 (298)
T PRK01045 97 PLV 99 (298)
T ss_pred ccc
Confidence 443
No 341
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=27.21 E-value=2.1e+02 Score=26.00 Aligned_cols=51 Identities=24% Similarity=0.399 Sum_probs=35.0
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 142 RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 142 RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
..+.+.|.+.++++++.|+..|. +.--||-= ..|+.++++.|++.|+.+.+
T Consensus 36 ~l~~e~~~~ii~~~~~~g~~~v~----~~GGEPll-------~~~~~~ii~~~~~~g~~~~l 86 (358)
T TIGR02109 36 ELTTEEWTDVLTQAAELGVLQLH----FSGGEPLA-------RPDLVELVAHARRLGLYTNL 86 (358)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEE----EeCccccc-------cccHHHHHHHHHHcCCeEEE
Confidence 46778888888888888865433 23345542 12567888888888887655
No 342
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=26.85 E-value=1e+02 Score=24.75 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=31.0
Q ss_pred HHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCe
Q psy13824 150 EILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 150 drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
..-++++++|++.|... .|-|-+.| -+.+|++-|++.||.
T Consensus 69 lla~ra~~~gi~~vvfD---------rgg~~yhG--rV~a~a~~are~GL~ 108 (109)
T CHL00139 69 KLAKKSLKKGITKVVFD---------RGGKLYHG--RIKALAEAAREAGLQ 108 (109)
T ss_pred HHHHHHHHCCCCEEEEc---------CCCCccch--HHHHHHHHHHHhCCC
Confidence 34568999999988662 45555665 679999999999985
No 343
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.77 E-value=3.4e+02 Score=25.96 Aligned_cols=74 Identities=12% Similarity=0.154 Sum_probs=48.2
Q ss_pred CCeEEECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcc--------cCCCCeeeeeCcccHHHHHH
Q psy13824 121 ANTFRMDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSH--------EAQPGTYSFDGHRDVEYFMR 192 (226)
Q Consensus 121 ~~~F~ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlH--------EPe~G~FDFsG~~DLd~FI~ 192 (226)
.....+.||++.+++|..+. ..+- ..++++|+..+.+...|... +-.++..-.+ +.|+.++.+
T Consensus 293 ~~~~~L~Gkrv~i~~g~~~~-----~~~~---~~l~elGmevv~~g~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~e~~~ 363 (421)
T cd01976 293 KYRPRLEGKTVMLYVGGLRP-----RHYI---GAYEDLGMEVVGTGYEFAHRDDYERTEVIPKEGTLLYD-DVTHYELEE 363 (421)
T ss_pred HHHHHcCCCEEEEECCCCcH-----HHHH---HHHHHCCCEEEEEEeecCCHHHHhhHHhhcCCceEEEc-CCCHHHHHH
Confidence 34578899999999886543 2222 46789999999988876331 1112333222 236777888
Q ss_pred HHHHcCCeEEE
Q psy13824 193 LAAEEGLYVLL 203 (226)
Q Consensus 193 lA~e~GL~VIL 203 (226)
.+++.+--+++
T Consensus 364 ~i~~~~pDlii 374 (421)
T cd01976 364 FVKRLKPDLIG 374 (421)
T ss_pred HHHHhCCCEEE
Confidence 87777777666
No 344
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=26.75 E-value=1.1e+02 Score=29.19 Aligned_cols=52 Identities=12% Similarity=0.259 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 147 RWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 147 ~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
.|..-++.+++.|++.|.-+.. .+. +....+.+ --..+++.|++.||.|+.+
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~-~l~-~~~~~~~~----~~~~~v~~Ah~~GL~V~~W 297 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIW-MLV-DPDENGKI----VPSEYAKAAKAAGLDIITW 297 (356)
T ss_pred cHHHHHHHHHhCCccEecCchh-hcc-cccccccc----CCHHHHHHHHHcCCEEEEE
Confidence 3778899999999986654321 111 11111111 2368999999999999864
No 345
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=26.74 E-value=1.4e+02 Score=27.30 Aligned_cols=48 Identities=25% Similarity=0.345 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEE-Eeecccccc
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL-LYSGFSWTM 211 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VI-LRpGPYIca 211 (226)
+...+.++++|++|+. |+. +.+|.+ +-|+.|++.|-..| |--|||-++
T Consensus 110 ~~l~~~i~~l~~~gI~-VSL-----FiDPd~------------~qi~~A~~~GAd~VELhTG~Ya~a 158 (234)
T cd00003 110 EKLKPIIERLKDAGIR-VSL-----FIDPDP------------EQIEAAKEVGADRVELHTGPYANA 158 (234)
T ss_pred HHHHHHHHHHHHCCCE-EEE-----EeCCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 5666777777777773 555 345543 35566666666644 666666654
No 346
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=26.70 E-value=74 Score=31.88 Aligned_cols=51 Identities=24% Similarity=0.186 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCCEEEEeee-cC--cccCCCCeeeeeCcccHHHHHHHHHHcCCeEE
Q psy13824 149 REILRKIRSAGLNAVSTYVG-WS--SHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~-Wn--lHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VI 202 (226)
++.|+.|+++|+|.|+.+|- -+ ..+----..+.. +..+.++++++.|+.|.
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght~~---~v~~Ai~~lr~~G~~v~ 259 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTKRGHTVR---DVVEATRLLRDAGLKVV 259 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCeEE
Confidence 46788999999999999763 11 111111123344 77888999999999864
No 347
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=26.59 E-value=1.3e+02 Score=26.77 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=28.5
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEE
Q psy13824 142 RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 142 RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VI 202 (226)
..++....+..+.+|+-|+.+|-+ ||+... ...=.+|++.|..|+
T Consensus 203 eps~~~l~~l~~~ik~~~v~~if~-------e~~~~~---------~~~~~la~~~g~~v~ 247 (282)
T cd01017 203 EPSPKQLAELVEFVKKSDVKYIFF-------EENASS---------KIAETLAKETGAKLL 247 (282)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE-------eCCCCh---------HHHHHHHHHcCCcEE
Confidence 344777888888888888887766 554321 122235677787754
No 348
>PRK09989 hypothetical protein; Provisional
Probab=26.50 E-value=1e+02 Score=26.71 Aligned_cols=59 Identities=12% Similarity=0.027 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCcccCC-CCeeeeeCcccHHHHHHHHHHcCCeEEEee
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGWSSHEAQ-PGTYSFDGHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~WnlHEPe-~G~FDFsG~~DLd~FI~lA~e~GL~VILRp 205 (226)
++.++.++.++++|...|.+...|-..++. +..++.. ...|.++.+.|++.|+.+.+-|
T Consensus 85 ~~l~~~i~~A~~lg~~~v~v~~g~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~lE~ 144 (258)
T PRK09989 85 ADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRAVF-IDNLRYAADRFAPHGKRILVEA 144 (258)
T ss_pred HHHHHHHHHHHHhCcCEEEECccCCCCCCCHHHHHHHH-HHHHHHHHHHHHhcCCEEEEEe
Confidence 345666666799999988654333211111 1111111 2367788889999999987765
No 349
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=26.49 E-value=84 Score=29.37 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCCEEEEeee-cCccc--CCCCeeeeeCcccHHHHHHHHHHcCCe
Q psy13824 149 REILRKIRSAGLNAVSTYVG-WSSHE--AQPGTYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~-WnlHE--Pe~G~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
++.++.+|++|+|.|+++|- =+-.. ---...+.+ +..+.++.|++.|+.
T Consensus 103 ~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~---~~~~ai~~~~~~g~~ 154 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSS---KAIDAVQECSEHGFS 154 (370)
T ss_pred HHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHH---HHHHHHHHHHHcCCC
Confidence 46689999999999999763 22110 001122333 777888899999985
No 350
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=26.42 E-value=2.3e+02 Score=26.51 Aligned_cols=67 Identities=19% Similarity=0.333 Sum_probs=43.4
Q ss_pred eeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 129 RPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 129 kpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
++.+++.|.--... -..+++....+++.|++.+ ++ .-.||.| +.+ ++++.++.+++.+.-+|+-.|=
T Consensus 27 kr~livtd~~~~~~--~g~~~~v~~~L~~~gi~~~---~f-~~v~~~p---~~~---~v~~~~~~~~~~~~D~IIaiGG 93 (383)
T cd08186 27 SKVLLVTGKSAYKK--SGAWDKVEPALDEHGIEYV---LY-NKVTPNP---TVD---QVDEAAKLGREFGAQAVIAIGG 93 (383)
T ss_pred CEEEEEcCccHHhh--cChHHHHHHHHHHcCCeEE---Ee-CCCCCCC---CHH---HHHHHHHHHHHcCCCEEEEeCC
Confidence 66777766433211 1446667777788898643 22 3456655 333 7788899999999888887764
No 351
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=26.16 E-value=2.6e+02 Score=26.65 Aligned_cols=66 Identities=14% Similarity=0.195 Sum_probs=44.8
Q ss_pred CeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeec
Q psy13824 128 GRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSG 206 (226)
Q Consensus 128 Gkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpG 206 (226)
.++.+++.+.--. + ...+++..+.+++.|++... +.-.+|+|. .+ .+++.++++++.+.-+|+-.|
T Consensus 23 ~~~vlivt~~~~~-~--~g~~~~v~~~L~~~gi~~~~----f~~v~~~p~---~~---~v~~~~~~~~~~~~D~IIaiG 88 (414)
T cd08190 23 ARRVCLVTDPNLA-Q--LPPVKVVLDSLEAAGINFEV----YDDVRVEPT---DE---SFKDAIAFAKKGQFDAFVAVG 88 (414)
T ss_pred CCeEEEEECcchh-h--cchHHHHHHHHHHcCCcEEE----eCCCCCCcC---HH---HHHHHHHHHHhcCCCEEEEeC
Confidence 3566666664321 2 23456677778889998542 345567773 34 788999999999999998776
No 352
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=26.06 E-value=1.8e+02 Score=26.06 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
++-+++++++|++-|.+. -+|- + ..+.+++.++++|+..++
T Consensus 105 e~f~~~~~~aGvdgviip-----Dlp~------e---e~~~~~~~~~~~gl~~i~ 145 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVA-----DLPL------E---ESGDLVEAAKKHGVKPIF 145 (256)
T ss_pred HHHHHHHHHcCCCEEEEC-----CCCh------H---HHHHHHHHHHHCCCcEEE
Confidence 556889999999999885 2332 2 668899999999999653
No 353
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=25.96 E-value=1.8e+02 Score=24.19 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=47.2
Q ss_pred ECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeee-cCcccCC---------CCeee---eeCcccHHHHHH
Q psy13824 126 MDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVG-WSSHEAQ---------PGTYS---FDGHRDVEYFMR 192 (226)
Q Consensus 126 ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~-WnlHEPe---------~G~FD---FsG~~DLd~FI~ 192 (226)
+.|+++++..|+-.- .+-.+++++.|...+...++ -...+.. .+.+| |+-..-++.|++
T Consensus 123 ~~~~~ili~~~~~~~--------~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~ivftS~~~v~~~~~ 194 (249)
T PRK05928 123 LKGKRVLYLRGNGGR--------EVLGDTLEERGAEVDECEVYERVPPKLDGAELLARLQSGEVDAVIFTSPSTVRAFFS 194 (249)
T ss_pred cCCCEEEEECCCCCH--------HHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHHHhCCCCEEEECCHHHHHHHHH
Confidence 578888888776543 34445677889877666544 2221111 13444 555567788888
Q ss_pred HHHHcCC------eEEEeecccccc
Q psy13824 193 LAAEEGL------YVLLYSGFSWTM 211 (226)
Q Consensus 193 lA~e~GL------~VILRpGPYIca 211 (226)
.+.+.++ ..++..||..-.
T Consensus 195 ~~~~~~~~~~~~~~~~~aiG~~Ta~ 219 (249)
T PRK05928 195 LAPELGRREWLLSCKAVVIGERTAE 219 (249)
T ss_pred HhcccchhHHHhCCeEEEeCHHHHH
Confidence 8877652 246777877653
No 354
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=25.88 E-value=2.1e+02 Score=26.68 Aligned_cols=62 Identities=23% Similarity=0.341 Sum_probs=40.9
Q ss_pred CeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeec
Q psy13824 128 GRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSG 206 (226)
Q Consensus 128 Gkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpG 206 (226)
|++.+|+.|.... .+++....+++.|+...... .+++|- .+ ++++.++++++.+--+|+-.|
T Consensus 22 ~~r~livtd~~~~------~~~~v~~~L~~~g~~~~~~~-----~~~~p~---~~---~v~~~~~~~~~~~~D~IIaiG 83 (374)
T cd08183 22 GRRVLLVTGASSL------RAAWLIEALRAAGIEVTHVV-----VAGEPS---VE---LVDAAVAEARNAGCDVVIAIG 83 (374)
T ss_pred CCcEEEEECCchH------HHHHHHHHHHHcCCeEEEec-----CCCCcC---HH---HHHHHHHHHHhcCCCEEEEec
Confidence 4666666654322 66777777889998753221 233442 23 788999999999998888766
No 355
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=25.86 E-value=50 Score=25.33 Aligned_cols=72 Identities=15% Similarity=0.274 Sum_probs=46.9
Q ss_pred CeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeee----------cCcccCCCCeeeeeCcccHHHHHHHHHHc
Q psy13824 128 GRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVG----------WSSHEAQPGTYSFDGHRDVEYFMRLAAEE 197 (226)
Q Consensus 128 Gkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~----------WnlHEPe~G~FDFsG~~DLd~FI~lA~e~ 197 (226)
.-.+++....+|+..-|.+..+...+.+|..|.=.+.+.-. |....+..+...|- ..+++.+++++.
T Consensus 78 ~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~ 154 (161)
T PF13489_consen 78 SFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFF---SPDELRQLLEQA 154 (161)
T ss_dssp SEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEB---BHHHHHHHHHHT
T ss_pred chhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccC---CHHHHHHHHHHC
Confidence 44567777888887755555666666666567755655531 44444432333443 678999999999
Q ss_pred CCeEE
Q psy13824 198 GLYVL 202 (226)
Q Consensus 198 GL~VI 202 (226)
|+.++
T Consensus 155 G~~iv 159 (161)
T PF13489_consen 155 GFEIV 159 (161)
T ss_dssp TEEEE
T ss_pred CCEEE
Confidence 99875
No 356
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=25.84 E-value=1.2e+02 Score=24.85 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=30.5
Q ss_pred HHHHHHHHcC-CCEEEEeeecCcccCCCCeeeeeC---c--ccHHHHHHHHHHcCCeEEEe
Q psy13824 150 EILRKIRSAG-LNAVSTYVGWSSHEAQPGTYSFDG---H--RDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 150 drL~kmKaaG-lNTV~tyV~WnlHEPe~G~FDFsG---~--~DLd~FI~lA~e~GL~VILR 204 (226)
+.+++++++| ++.|.+.+. -+++..-++.| . .++.+.++.++++|+.+.++
T Consensus 103 ~~l~~l~~~g~~~~v~isl~----~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~i~ 159 (191)
T TIGR02495 103 RVLEELLEEGLVDYVAMDVK----APPEKYPELYGLEKNGSNNILKSLEILLRSGIPFELR 159 (191)
T ss_pred HHHHHHHhcCCCcEEEEecc----CChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEEEE
Confidence 5677888888 577766432 12111001111 1 26778889999999987665
No 357
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=25.75 E-value=2.6e+02 Score=25.88 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=38.5
Q ss_pred eeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 129 RPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 129 kpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
++.+|+.+.--+ ......+.+++.|+... ..+-.||.| +++ .+++.++.+++.+.-+|+-.|=
T Consensus 24 ~~~livtd~~~~------~~~~~~~~l~~~~~~~~----~~~~~~~~p---~~~---~v~~~~~~~~~~~~D~IIavGG 86 (367)
T cd08182 24 KRVLLVTGPRSA------IASGLTDILKPLGTLVV----VFDDVQPNP---DLE---DLAAGIRLLREFGPDAVLAVGG 86 (367)
T ss_pred CeEEEEeCchHH------HHHHHHHHHHHcCCeEE----EEcCcCCCc---CHH---HHHHHHHHHHhcCcCEEEEeCC
Confidence 455555544322 23334445677775432 234456665 344 7889999999999998887764
No 358
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=25.75 E-value=98 Score=26.88 Aligned_cols=32 Identities=31% Similarity=0.292 Sum_probs=26.2
Q ss_pred ccccCCCCC--HhHHHHHHHHHHHcCCCEEEEee
Q psy13824 136 GEFHYFRSP--QERWREILRKIRSAGLNAVSTYV 167 (226)
Q Consensus 136 GeiHYfRvP--~e~W~drL~kmKaaGlNTV~tyV 167 (226)
+++|+|.-+ .+.+.+.+++|++.|.+.|.+-+
T Consensus 123 ~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~ 156 (228)
T TIGR01093 123 MSYHDFQKTPSWEEIVERLEKALSYGADIVKIAV 156 (228)
T ss_pred EeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 489998543 56789999999999999988744
No 359
>PRK08462 biotin carboxylase; Validated
Probab=25.58 E-value=1.8e+02 Score=27.45 Aligned_cols=55 Identities=11% Similarity=0.055 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcc---cCCCCeeeee-------CcccHHHHHHHHHHcCCeEEE
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSH---EAQPGTYSFD-------GHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlH---EPe~G~FDFs-------G~~DLd~FI~lA~e~GL~VIL 203 (226)
-..++.+|++|+-+|.+|-.=+-+ -....++..- .-.|.++++++|++++..+|+
T Consensus 17 ~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~ 81 (445)
T PRK08462 17 LRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIF 81 (445)
T ss_pred HHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEE
Confidence 478899999999999997432211 1111111111 113789999999999999766
No 360
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=25.48 E-value=1.2e+02 Score=26.74 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCCEEEEeeecC-cccCCCCeeeeeC---cccHHHHHHHHHHcCCeEEE
Q psy13824 149 REILRKIRSAGLNAVSTYVGWS-SHEAQPGTYSFDG---HRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~Wn-lHEPe~G~FDFsG---~~DLd~FI~lA~e~GL~VIL 203 (226)
++++++.+++|++.|+++++-+ .|-. -++..+- ...+...++.|+++|+.|.+
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~--~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~ 128 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLA--HKLGKDRAWVLDQLRRLVGRAKDRGLFVSV 128 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 4456677777777777776533 1100 0111100 01445666677777776553
No 361
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=25.48 E-value=2.1e+02 Score=27.94 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=45.3
Q ss_pred CeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecC-ccc-CCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 128 GRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWS-SHE-AQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 128 Gkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~Wn-lHE-Pe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
|+|.+.+|==+|+ +..++++++.|+.+|...--.. +.| |..+..=|+-.--=.+..+.|++.|+.||=
T Consensus 68 ~~~vytlG~IIHN--------p~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~~~~VIIrAHGv~~~v~~~~~~rgl~iiD 137 (387)
T PRK13371 68 DERIWITNEIIHN--------PSVNQHLREMGVRFIPVEKGVKDFSVVTPGDVVILPAFGATVQEMQLLNEKGCHIVD 137 (387)
T ss_pred CCCeEEecCCcCC--------HHHHHHHHhCCCEEEcCcCcccchhcCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEe
Confidence 6889999999999 8889999999999997410011 112 223345554221225678888888888773
No 362
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=25.39 E-value=4e+02 Score=25.07 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=50.2
Q ss_pred eEEECC-eeeEEeeccccCCCCCHhHHHHHHHHHH----HcCCCEEEEeeecCcccCCCCeeeeeC---cccHHHHHHHH
Q psy13824 123 TFRMDG-RPFRFVSGEFHYFRSPQERWREILRKIR----SAGLNAVSTYVGWSSHEAQPGTYSFDG---HRDVEYFMRLA 194 (226)
Q Consensus 123 ~F~ldG-kpf~ilgGeiHYfRvP~e~W~drL~kmK----aaGlNTV~tyV~WnlHEPe~G~FDFsG---~~DLd~FI~lA 194 (226)
.+.+.| +|+++++|-.--+ .++.-.+.-+++| ++|++.+.-..||--.-..| |+|.| ..-|+-+-+..
T Consensus 8 ~~~ig~~~~~~~iaGPCsvE--s~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp--~sFqG~G~eeGL~iL~~vk 83 (281)
T PRK12457 8 GITVGNDLPFVLFGGINVLE--SLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSI--HSYRGVGLDEGLRIFEEVK 83 (281)
T ss_pred CeEEcCCCceEEEecCCccc--CHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCC--CCCCCCCHHHHHHHHHHHH
Confidence 355664 4888998854332 2455556666655 59999988888884333334 45665 34566666777
Q ss_pred HHcCCeEEE
Q psy13824 195 AEEGLYVLL 203 (226)
Q Consensus 195 ~e~GL~VIL 203 (226)
++.||.|+-
T Consensus 84 ~~~GlpvvT 92 (281)
T PRK12457 84 ARFGVPVIT 92 (281)
T ss_pred HHHCCceEE
Confidence 889998864
No 363
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=25.38 E-value=3.4e+02 Score=21.39 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=45.6
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeee--eC-----cccHHHHHHHHHHcCCe-EEEeeccccccccC
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSF--DG-----HRDVEYFMRLAAEEGLY-VLLYSGFSWTMKSS 214 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDF--sG-----~~DLd~FI~lA~e~GL~-VILRpGPYIcaesT 214 (226)
.+..+..++.+|+.|...+-.-=.++.....++.+.- .+ -.+..+.-+..++.|+. +++|||.+.....+
T Consensus 75 ~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ivrp~~~~~~~~~ 152 (183)
T PF13460_consen 75 VDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDEDKPIFPEYARDKREAEEALRESGLNWTIVRPGWIYGNPSR 152 (183)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGTCGGGHHHHHHHHHHHHHHHHSTSEEEEEEESEEEBTTSS
T ss_pred ccccccccccccccccccceeeeccccCCCCCcccccccccchhhhHHHHHHHHHHHHhcCCCEEEEECcEeEeCCCc
Confidence 6667888899999998755443347777766664211 00 02333445555678998 79999998886533
No 364
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=25.37 E-value=1.5e+02 Score=27.41 Aligned_cols=59 Identities=8% Similarity=0.147 Sum_probs=38.2
Q ss_pred HHHHHHcCCCEEEEe---eecCcccCCCCeeeeeC--cccHHHHHHHHHHcCCeEEEeecccccc
Q psy13824 152 LRKIRSAGLNAVSTY---VGWSSHEAQPGTYSFDG--HRDVEYFMRLAAEEGLYVLLYSGFSWTM 211 (226)
Q Consensus 152 L~kmKaaGlNTV~ty---V~WnlHEPe~G~FDFsG--~~DLd~FI~lA~e~GL~VILRpGPYIca 211 (226)
|+--.+-|+..-|.. +|+.-|+...+ |++.. ..+++++-+.++++|+.+.+-|+.|++=
T Consensus 54 l~~~~~~~I~~~R~sS~l~P~~~h~~~~~-w~~~~~~~~~~~~~g~~~~~~~irls~Hp~y~inL 117 (303)
T PRK02308 54 LKYNIAHGIGLFRLSSSLIPLATHPELEG-WDYIEPFKEELREIGEFIKEHNIRLSFHPDQFVVL 117 (303)
T ss_pred HHHHHHCCCCEEEcccCcCCCCCChhhcc-cCCCCCCHHHHHHHHHHHHHcCCCeeccChhhhcC
Confidence 333344555544443 56777753322 33321 2488999999999999999999888773
No 365
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=25.30 E-value=1.3e+02 Score=26.91 Aligned_cols=47 Identities=6% Similarity=-0.032 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEee
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRp 205 (226)
+..++++..+|++.|-+ .-|-|.+|.. ++...+..++..|..+++|+
T Consensus 23 p~~~e~~~~~g~D~v~i-------DlEH~~~~~~---~~~~~~~a~~~~g~~~~VRv 69 (249)
T TIGR02311 23 PYAAEICAGAGFDWLLI-------DGEHAPNDVR---TILSQLQALAPYPSSPVVRP 69 (249)
T ss_pred cHHHHHHHhcCCCEEEE-------eccCCCCCHH---HHHHHHHHHHhcCCCcEEEC
Confidence 45577899999999987 3355567777 88889988888899999995
No 366
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=25.26 E-value=59 Score=30.44 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCCEEEEeee-cCcccCCCCeeeeeCc---ccHHHHHHHHHHcCCeEEE
Q psy13824 149 REILRKIRSAGLNAVSTYVG-WSSHEAQPGTYSFDGH---RDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~-WnlHEPe~G~FDFsG~---~DLd~FI~lA~e~GL~VIL 203 (226)
+++++++.++|+..|.++++ ++.|-.. ++..+-. ..+.+.++.|+++|+.|-.
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~--~~~~s~~e~l~~~~~~i~~ak~~g~~v~~ 131 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEA--KLRKDRAWVLERLARLVSFARDRGLFVSV 131 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHH--HhCcCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 56677788888888888876 4333211 1111100 1344667777777776543
No 367
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=25.23 E-value=98 Score=26.64 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=27.1
Q ss_pred ccccCCCCC--HhHHHHHHHHHHHcCCCEEEEee
Q psy13824 136 GEFHYFRSP--QERWREILRKIRSAGLNAVSTYV 167 (226)
Q Consensus 136 GeiHYfRvP--~e~W~drL~kmKaaGlNTV~tyV 167 (226)
+++|+|.-+ .+.|.+.+++|++.|.+.+..-+
T Consensus 118 ~S~H~f~~tp~~~~l~~~~~~~~~~gadivKla~ 151 (225)
T cd00502 118 GSYHDFSGTPSDEELVSRLEKMAALGADIVKIAV 151 (225)
T ss_pred EEeccCCCCcCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 489998754 67899999999999999888854
No 368
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=25.17 E-value=2e+02 Score=25.07 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=28.8
Q ss_pred HHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 151 ILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 151 rL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
-+++++++|.+.|+. +.|..+ ++.++|+.++++|+++=+
T Consensus 72 ~i~~~~~~g~~~i~~-----H~E~~~---------~~~~~i~~ik~~g~k~Gi 110 (201)
T PF00834_consen 72 YIEEFAEAGADYITF-----HAEATE---------DPKETIKYIKEAGIKAGI 110 (201)
T ss_dssp HHHHHHHHT-SEEEE-----EGGGTT---------THHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhcCCCEEEE-----cccchh---------CHHHHHHHHHHhCCCEEE
Confidence 456678889999987 334332 788999999999999543
No 369
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=25.15 E-value=2.6e+02 Score=24.41 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=39.0
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 142 RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 142 RvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
..+.++.++..+.+++.|+.....=| +-|..-+ .+.++++.|++.|+.||+
T Consensus 12 ~SD~~~mk~Aa~~L~~fgi~ye~~Vv--SAHRTPe---------~m~~ya~~a~~~g~~viI 62 (162)
T COG0041 12 KSDWDTMKKAAEILEEFGVPYEVRVV--SAHRTPE---------KMFEYAEEAEERGVKVII 62 (162)
T ss_pred cchHHHHHHHHHHHHHcCCCeEEEEE--eccCCHH---------HHHHHHHHHHHCCCeEEE
Confidence 56678899999999999996433222 3454433 678999999999999988
No 370
>PTZ00445 p36-lilke protein; Provisional
Probab=25.09 E-value=1.6e+02 Score=26.76 Aligned_cols=61 Identities=8% Similarity=0.170 Sum_probs=42.1
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCC-Ceeee---------eCcccHHHHHHHHHHcCCeEEE
Q psy13824 143 SPQERWREILRKIRSAGLNAVSTYVGWSSHEAQP-GTYSF---------DGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~-G~FDF---------sG~~DLd~FI~lA~e~GL~VIL 203 (226)
.+.+.-+.-.+.+|+.|+++|-+...=-+..--- |-.+- ++..++..+++.+.+.|+.|++
T Consensus 26 ~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 26 NPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 4466777788899999999998875422222111 11122 2456788999999999999765
No 371
>PLN02229 alpha-galactosidase
Probab=24.89 E-value=2.7e+02 Score=27.56 Aligned_cols=81 Identities=15% Similarity=0.161 Sum_probs=55.5
Q ss_pred eEEeeccccCCCCCHhHHHHHHHHH-----HHcCCCEEEEeeecCccc-CCCCeeeeeCc---ccHHHHHHHHHHcCCe-
Q psy13824 131 FRFVSGEFHYFRSPQERWREILRKI-----RSAGLNAVSTYVGWSSHE-AQPGTYSFDGH---RDVEYFMRLAAEEGLY- 200 (226)
Q Consensus 131 f~ilgGeiHYfRvP~e~W~drL~km-----KaaGlNTV~tyV~WnlHE-Pe~G~FDFsG~---~DLd~FI~lA~e~GL~- 200 (226)
.-.-+=+..+..+..+..++..+.| |++|.+.|.+.--|...+ -+.|.+--+-. .-+..+.+..++.||+
T Consensus 65 mGWnSWn~~~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~k~ladyiH~~GlKf 144 (427)
T PLN02229 65 MGWNSWNFFACNINETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGIKLLADYVHSKGLKL 144 (427)
T ss_pred ceEEchhhhCcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCCcHHHHHHHHHHCCCce
Confidence 3344445555677888888888875 999999999999997543 12343311110 2388999999999998
Q ss_pred -EEEeecccccc
Q psy13824 201 -VLLYSGFSWTM 211 (226)
Q Consensus 201 -VILRpGPYIca 211 (226)
+-.-+|..-|+
T Consensus 145 GIy~d~G~~TC~ 156 (427)
T PLN02229 145 GIYSDAGVFTCQ 156 (427)
T ss_pred EEeccCCCcccC
Confidence 45667777664
No 372
>PLN03036 glutamine synthetase; Provisional
Probab=24.89 E-value=3.9e+02 Score=26.30 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=44.7
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCc----------ccH-HH-HHHHHHHcCCeEEEeeccccc
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGH----------RDV-EY-FMRLAAEEGLYVLLYSGFSWT 210 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~----------~DL-d~-FI~lA~e~GL~VILRpGPYIc 210 (226)
++.-++..+.+.++|++.-.+ .||-.||||.|.=. ..+ .. +-+.|+++|+.+-.-|=|+..
T Consensus 229 ~~i~~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~g 301 (432)
T PLN03036 229 RDISDAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIEG 301 (432)
T ss_pred HHHHHHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCCC
Confidence 355566667889999998888 89999999998621 111 12 224688899999998988753
No 373
>PRK12928 lipoyl synthase; Provisional
Probab=24.87 E-value=1.7e+02 Score=26.85 Aligned_cols=57 Identities=16% Similarity=0.068 Sum_probs=32.3
Q ss_pred CCHhHHHHHHHHHHHcC--CCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeeccccc
Q psy13824 143 SPQERWREILRKIRSAG--LNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWT 210 (226)
Q Consensus 143 vP~e~W~drL~kmKaaG--lNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIc 210 (226)
...+.|.+.++.+|++| +.+-+ ++.-.+-|.++ |+.+.++.+++.|+. ++-.|+|..
T Consensus 185 ~t~e~~le~l~~ak~~gp~i~~~s-~iIvG~GET~e---------d~~etl~~Lrel~~d-~v~i~~Yl~ 243 (290)
T PRK12928 185 ADYQRSLDLLARAKELAPDIPTKS-GLMLGLGETED---------EVIETLRDLRAVGCD-RLTIGQYLR 243 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCceecc-cEEEeCCCCHH---------HHHHHHHHHHhcCCC-EEEEEcCCC
Confidence 44666777777777777 54433 33333444443 566666666666664 444556654
No 374
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.85 E-value=1.3e+02 Score=27.09 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=16.8
Q ss_pred CCCCHhHHHHHHHHHHHcCCCEEEE
Q psy13824 141 FRSPQERWREILRKIRSAGLNAVST 165 (226)
Q Consensus 141 fRvP~e~W~drL~kmKaaGlNTV~t 165 (226)
....+....+.++.+|+-++.+|-+
T Consensus 210 ~eps~~~l~~l~~~ik~~~v~~If~ 234 (286)
T cd01019 210 IDPGAKRLAKIRKEIKEKGATCVFA 234 (286)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 3444677777777777777777744
No 375
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.83 E-value=97 Score=27.70 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=32.9
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEE
Q psy13824 143 SPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VI 202 (226)
..+..+.+..+.+|+.|+.+|-+ ||+.. ....+.+.+.+++.|+.|.
T Consensus 194 ps~~~l~~l~~~ik~~~v~~if~-------e~~~~------~~~~~~l~~~~~~~~~~v~ 240 (276)
T cd01016 194 AGLRDINELVDLIVERKIKAIFV-------ESSVN------QKSIEALQDAVKARGHDVQ 240 (276)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE-------eCCCC------HHHHHHHHHHHhhcCCccc
Confidence 44788888888888888888866 66542 2356667777777776553
No 376
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=24.83 E-value=1.8e+02 Score=25.56 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
++-+++++++|++.|...- + | ++ .++.+++.++++|+..++
T Consensus 94 ~~fi~~~~~aG~~giiipD---l--~------~e---e~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPD---L--P------PE---EAEEFREAAKEYGLDLIF 134 (242)
T ss_pred HHHHHHHHHCCCcEEEECC---C--C------HH---HHHHHHHHHHHcCCcEEE
Confidence 5568889999999888841 1 1 12 678999999999998765
No 377
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=24.68 E-value=1.1e+02 Score=27.83 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCe-EEEeecc
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLY-VLLYSGF 207 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~-VILRpGP 207 (226)
-+-++++++.|++..-..+.- ..+.+ ++++++++|++.|.. +.+.+-+
T Consensus 135 ~~~i~~l~~~g~~v~v~~vv~--------~~N~~---~l~~~~~~~~~lg~~~i~~~~~~ 183 (358)
T TIGR02109 135 LAMARAVKAAGLPLTLNFVIH--------RHNID---QIPEIIELAIELGADRVELATTQ 183 (358)
T ss_pred HHHHHHHHhCCCceEEEEEec--------cCCHH---HHHHHHHHHHHcCCCEEEEEeee
Confidence 345577788898755444432 12333 788999999999987 3343333
No 378
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=24.59 E-value=92 Score=29.17 Aligned_cols=50 Identities=26% Similarity=0.103 Sum_probs=31.5
Q ss_pred HHHHHHHHcCCCEEEEeee-cCccc--CCCCeeeeeCcccHHHHHHHHHHcCCeEE
Q psy13824 150 EILRKIRSAGLNAVSTYVG-WSSHE--AQPGTYSFDGHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 150 drL~kmKaaGlNTV~tyV~-WnlHE--Pe~G~FDFsG~~DLd~FI~lA~e~GL~VI 202 (226)
+.|+.||++|+|.|+.+|- =+-.. ----..+.+ ++.+.++.|++.+..|-
T Consensus 105 e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~---~~~~ai~~~~~~~~~v~ 157 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVA---EALAAIDLAREIFPRVS 157 (380)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHH---HHHHHHHHHHHhCccEE
Confidence 8889999999999999773 21111 001112333 66777888888766543
No 379
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=24.59 E-value=1.9e+02 Score=26.96 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=41.3
Q ss_pred cCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 139 HYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 139 HYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
++-..|.-..++-+...|+.|++.|++ .-..+.-+-++..+-.++=.+|.++|+-+|-
T Consensus 10 n~~~aP~l~v~affa~ak~lg~s~Vei-------Rndl~~~~I~dg~p~a~vka~Aek~Gl~IvS 67 (272)
T COG4130 10 NRIAAPGLSVEAFFALAKRLGLSKVEI-------RNDLPSNAIADGTPAAEVKALAEKAGLTIVS 67 (272)
T ss_pred hhccCCCCCHHHHHHHHHHcCcceeEE-------ecCCCcccccCCCCHHHHHHHHHHcCcEEEE
Confidence 344567777899999999999999998 2223333344445667788888889988664
No 380
>PRK06438 hypothetical protein; Provisional
Probab=24.53 E-value=1.3e+02 Score=28.28 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcCCCEEEEeee-c
Q psy13824 148 WREILRKIRSAGLNAVSTYVG-W 169 (226)
Q Consensus 148 W~drL~kmKaaGlNTV~tyV~-W 169 (226)
=++.+...|++|+..++.+-+ |
T Consensus 41 ~~~~~~~q~~aGld~~tdG~lrW 63 (292)
T PRK06438 41 KYIFYDKVKDIGIDEYTDPLFNW 63 (292)
T ss_pred HHHHHHHHHhcCCceEecCccch
Confidence 345778899999999999866 8
No 381
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=24.51 E-value=2.4e+02 Score=27.03 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=39.3
Q ss_pred eeEEeeccccCCCCCHhHH----HHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEee
Q psy13824 130 PFRFVSGEFHYFRSPQERW----REILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 130 pf~ilgGeiHYfRvP~e~W----~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRp 205 (226)
.+++++|++.-...|+.+. .+-+.++++.|+. +++...-|.... .+...-++.++.|+.|+-.+
T Consensus 41 D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~---v~~I~GNHD~~~---------~l~~~~~~l~~~gi~vl~~~ 108 (407)
T PRK10966 41 DAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQ---LVVLAGNHDSVA---------TLNESRDLLAFLNTTVIASA 108 (407)
T ss_pred CEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCc---EEEEcCCCCChh---------hhhhHHHHHHHCCcEEEecc
Confidence 3688999987655554443 3455677777654 444455555432 24456677788888877543
No 382
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=24.39 E-value=2e+02 Score=24.07 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 148 WREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 148 W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
-++.++.|+++|++++-..- +. | .+.+.+++++++.+ +|+...|-
T Consensus 17 ~~~~~~~~~~~Gv~~~v~~~-~~---~----------~~~~~~~~~~~~~~-~i~~~~Gi 61 (252)
T TIGR00010 17 VEEVIERAKAAGVTAVVAVG-TD---L----------EDFLRALELAEKYP-NVYAAVGV 61 (252)
T ss_pred HHHHHHHHHHcCCCEEEEec-CC---H----------HHHHHHHHHHHHCC-CEEEEEEe
Confidence 46677888888887765321 11 1 25567777788887 77666553
No 383
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=24.39 E-value=3.8e+02 Score=26.14 Aligned_cols=73 Identities=12% Similarity=0.153 Sum_probs=46.9
Q ss_pred CeEEECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCc--------ccCCCCeeeeeCcccHHHHHHH
Q psy13824 122 NTFRMDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSS--------HEAQPGTYSFDGHRDVEYFMRL 193 (226)
Q Consensus 122 ~~F~ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~Wnl--------HEPe~G~FDFsG~~DLd~FI~l 193 (226)
....+.||+..|++|..+. ..+- ..++++|+..|.+...|.. .+-..+..-.+ +.|+.++.++
T Consensus 329 ~~~~L~GKrv~i~~g~~~~-----~~~~---~~l~ELGmevv~~g~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~el~~~ 399 (466)
T TIGR01282 329 YRPRLEGKTVMLYVGGLRP-----RHVI---GAFEDLGMEVIGTGYEFAHNDDYERTTKYMKDGTLIYD-DVTHYEFEEF 399 (466)
T ss_pred HHHhcCCCEEEEECCCCcH-----HHHH---HHHHHCCCEEEEEeeecCCHHHHHHHHHhcCCCeEEee-CCCHHHHHHH
Confidence 5678899999999986443 2332 2478999999988776544 12122434333 2366677777
Q ss_pred HHHcCCeEEE
Q psy13824 194 AAEEGLYVLL 203 (226)
Q Consensus 194 A~e~GL~VIL 203 (226)
+++.+--+++
T Consensus 400 i~~~~pDl~i 409 (466)
T TIGR01282 400 VEKLKPDLVG 409 (466)
T ss_pred HHHhCCCEEE
Confidence 7776666655
No 384
>PRK08005 epimerase; Validated
Probab=24.27 E-value=2.5e+02 Score=24.78 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=35.4
Q ss_pred cccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 137 EFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 137 eiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
++|---..|+. -++++.++|.+.|+. +.|..+ ++.++|+..+++|+++=+
T Consensus 62 DvHLMv~~P~~---~i~~~~~~gad~It~-----H~Ea~~---------~~~~~l~~Ik~~G~k~Gl 111 (210)
T PRK08005 62 SFHLMVSSPQR---WLPWLAAIRPGWIFI-----HAESVQ---------NPSEILADIRAIGAKAGL 111 (210)
T ss_pred EEEeccCCHHH---HHHHHHHhCCCEEEE-----cccCcc---------CHHHHHHHHHHcCCcEEE
Confidence 55653334654 467778899999988 345332 678999999999999544
No 385
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=24.16 E-value=3.5e+02 Score=21.17 Aligned_cols=68 Identities=22% Similarity=0.319 Sum_probs=47.1
Q ss_pred EECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 125 RMDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 125 ~ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
.+.|..+++.+|..-. .-+++...+-++.+.+.|.-.+-+.+-=... .-| +++++.|.++++-+|.=
T Consensus 39 ~l~~gElvlttg~~~~-~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~-~iP-----------~~~i~~A~~~~lPli~i 105 (123)
T PF07905_consen 39 WLRGGELVLTTGYALR-DDDEEELREFIRELAEKGAAGLGIKTGRYLD-EIP-----------EEIIELADELGLPLIEI 105 (123)
T ss_pred hCCCCeEEEECCcccC-CCCHHHHHHHHHHHHHCCCeEEEEeccCccc-cCC-----------HHHHHHHHHcCCCEEEe
Confidence 3666676666665433 3356678999999999999888775421111 222 67999999999998874
Q ss_pred e
Q psy13824 205 S 205 (226)
Q Consensus 205 p 205 (226)
|
T Consensus 106 p 106 (123)
T PF07905_consen 106 P 106 (123)
T ss_pred C
Confidence 3
No 386
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=24.15 E-value=2.5e+02 Score=24.93 Aligned_cols=50 Identities=24% Similarity=0.330 Sum_probs=35.9
Q ss_pred cccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 137 EFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 137 eiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
++|--=..|+.| ++.+.++|.+.|+. +.|..+ ++.++|+..+++|+++=|
T Consensus 66 dvHLMv~~P~~~---i~~~~~~gad~I~~-----H~Ea~~---------~~~~~l~~Ir~~g~k~Gl 115 (223)
T PRK08745 66 DVHLMVEPVDRI---VPDFADAGATTISF-----HPEASR---------HVHRTIQLIKSHGCQAGL 115 (223)
T ss_pred EEEeccCCHHHH---HHHHHHhCCCEEEE-----cccCcc---------cHHHHHHHHHHCCCceeE
Confidence 455533346655 56777899999998 445432 678999999999999543
No 387
>PLN02822 serine palmitoyltransferase
Probab=24.05 E-value=1.6e+02 Score=28.58 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=34.6
Q ss_pred CHhHHHHHHHHHHHcCC---CEEEEeeecCcccCCCCeeeeeCc-ccHHHHHHHHHHcCCeEEEe
Q psy13824 144 PQERWREILRKIRSAGL---NAVSTYVGWSSHEAQPGTYSFDGH-RDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 144 P~e~W~drL~kmKaaGl---NTV~tyV~WnlHEPe~G~FDFsG~-~DLd~FI~lA~e~GL~VILR 204 (226)
+.+.|+.++++.++..- ++ +-.| .. +|.|.-+|. .+|+++.++|+++|+.+|+-
T Consensus 224 d~~~l~~~l~~~~~~~~~~~~~-~~~I---vv---e~i~~~~G~i~~L~~i~~l~~k~~~~LIvD 281 (481)
T PLN02822 224 DMESLRNTLEKLTAENKRKKKL-RRYI---VV---EAIYQNSGQIAPLDEIVRLKEKYRFRVLLD 281 (481)
T ss_pred CHHHHHHHHHHHhhhhcccCCC-cEEE---EE---ecCCCCCCCccCHHHHHHHHHHcCCEEEEE
Confidence 57789999988766421 11 1111 11 233333443 57999999999999999873
No 388
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=23.78 E-value=1.9e+02 Score=24.62 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=10.0
Q ss_pred HHHHHHHHHHcCCCEEEE
Q psy13824 148 WREILRKIRSAGLNAVST 165 (226)
Q Consensus 148 W~drL~kmKaaGlNTV~t 165 (226)
+++.+++++++|+..|+.
T Consensus 17 l~~~l~~~~~~G~~gvEi 34 (274)
T COG1082 17 LEEILRKAAELGFDGVEL 34 (274)
T ss_pred HHHHHHHHHHhCCCeEec
Confidence 455555555555555555
No 389
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=23.78 E-value=1.9e+02 Score=26.81 Aligned_cols=59 Identities=8% Similarity=0.081 Sum_probs=42.7
Q ss_pred CCCHhHHHHHHHHHHHc--CCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecccccc
Q psy13824 142 RSPQERWREILRKIRSA--GLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTM 211 (226)
Q Consensus 142 RvP~e~W~drL~kmKaa--GlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGPYIca 211 (226)
+...+.+.+.++++|++ |+ .+.+.+.-.+-|.++ |+.+.++.+++.|...+ -.|+|...
T Consensus 187 ~~t~e~~Le~l~~ak~~~pgi-~~~TgiIVGlGETee---------e~~etl~~Lrelg~d~v-~igqYl~p 247 (302)
T TIGR00510 187 GATYRWSLKLLERAKEYLPNL-PTKSGIMVGLGETNE---------EIKQTLKDLRDHGVTMV-TLGQYLRP 247 (302)
T ss_pred CCCHHHHHHHHHHHHHhCCCC-eecceEEEECCCCHH---------HHHHHHHHHHhcCCCEE-EeecccCC
Confidence 44567777888888888 55 455556666677665 88888888889988844 47888873
No 390
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=23.65 E-value=45 Score=32.69 Aligned_cols=56 Identities=25% Similarity=0.383 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCCEEEEee---ecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 147 RWREILRKIRSAGLNAVSTYV---GWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 147 ~W~drL~kmKaaGlNTV~tyV---~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
..++||..|+..=++.++... -|.+...+.|=|.|+|- .-+.+..+-.|+|+|++-
T Consensus 313 ~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gl-s~~QV~rLree~~IY~v~ 371 (396)
T COG1448 313 EMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGL-SPEQVDRLREEFGIYLVA 371 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCC-CHHHHHHHHHhccEEEec
Confidence 345566666666666666632 39999999999999975 558899999999999764
No 391
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=23.64 E-value=1.2e+02 Score=29.23 Aligned_cols=55 Identities=22% Similarity=0.374 Sum_probs=43.3
Q ss_pred ECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHH
Q psy13824 126 MDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAE 196 (226)
Q Consensus 126 ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e 196 (226)
..|++...++|=-|+ ..-++.++++|++.+.++.| |..++|+ ..+|+.+.+.++.
T Consensus 231 ~~~~~v~afaGIg~P--------~rFf~tL~~~g~~~~~~~~F-------pDH~~f~-~~~l~~l~~~~~~ 285 (336)
T COG1663 231 LKGKRVVAFAGIGNP--------QRFFATLRNLGIQVVETLAF-------PDHYDFS-AADLEDLAKKAQA 285 (336)
T ss_pred cCCceEEEEEecCCh--------HHHHHHHHHcCcceeeeecC-------Cchhhcc-HHHHHHHHhhhcc
Confidence 344778899998888 56678889999999999644 7788887 3478888888776
No 392
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.63 E-value=1.8e+02 Score=25.82 Aligned_cols=58 Identities=7% Similarity=0.028 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeE--EEeecccc
Q psy13824 148 WREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYV--LLYSGFSW 209 (226)
Q Consensus 148 W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~V--ILRpGPYI 209 (226)
-.+.++.+++.|.++++..+- .|+--..+.....+.++|-+.++++++.+ +.-=+||.
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~----~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~ 72 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLK----SPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL 72 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEec----CccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee
Confidence 367899999999999999642 22211111111236778888899998863 45558884
No 393
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=23.60 E-value=2.6e+02 Score=25.99 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=32.8
Q ss_pred CCCCCHhHHHHHHHHHHHcCCCEEEEe-------eecCcccCCCCeeeeeC-cccHHHHHHHHHHcCCeEEEe
Q psy13824 140 YFRSPQERWREILRKIRSAGLNAVSTY-------VGWSSHEAQPGTYSFDG-HRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 140 YfRvP~e~W~drL~kmKaaGlNTV~ty-------V~WnlHEPe~G~FDFsG-~~DLd~FI~lA~e~GL~VILR 204 (226)
+...+++.| .+.+|++|+..|-.- -.|...-..-..-+-.+ +.-+.+|.+.|+++||++-+-
T Consensus 88 p~~fD~dqW---~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y 157 (346)
T PF01120_consen 88 PTKFDADQW---AKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLY 157 (346)
T ss_dssp -TT--HHHH---HHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEE
T ss_pred cccCCHHHH---HHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 344556666 567899999855432 12655433322222222 234568999999999998773
No 394
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=23.28 E-value=1.1e+02 Score=28.07 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=43.0
Q ss_pred EEeeccccCCC---CCHhHHHHHHHHHHHcCCCE--EEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 132 RFVSGEFHYFR---SPQERWREILRKIRSAGLNA--VSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 132 ~ilgGeiHYfR---vP~e~W~drL~kmKaaGlNT--V~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
++-.+-..+.| ++|..+ .+.++++|+.- +.| .+--...-|||-....|.+|++.|+++||.+=|
T Consensus 117 vVAv~yAD~~r~~~~~p~~l---~~~a~~aG~~gvMlDT-----a~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~aL 185 (235)
T PF04476_consen 117 VVAVGYADAQRVGSISPLDL---PEIAAEAGFDGVMLDT-----ADKDGGSLFDHLSEEELAEFVAQARAHGLMCAL 185 (235)
T ss_pred EEEEEecchhhhcCCCHHHH---HHHHHHcCCCEEEEec-----ccCCCCchhhcCCHHHHHHHHHHHHHccchhhc
Confidence 44444444444 345444 56678888874 444 334445678988888999999999999998654
No 395
>PRK13596 NADH dehydrogenase I subunit F; Provisional
Probab=23.27 E-value=98 Score=30.40 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=44.7
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHc--------------CCeEEEeeccc
Q psy13824 143 SPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEE--------------GLYVLLYSGFS 208 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~--------------GL~VILRpGPY 208 (226)
.|.+..+-.+..+++.|...+-+||--+..+.. .-|.+.|+.+++. ++.|..-+|-|
T Consensus 101 ~p~~vieG~~i~a~avgA~~~~I~ir~~~~~~i---------~~l~~ai~~~~~~~~lg~~i~g~~~~~~i~v~~~~~~Y 171 (433)
T PRK13596 101 DPHKLIEGCLIASFAMGAHAAYIYIRGEFIRER---------EALQAAIDEAYEAGLIGKNACGSGWDFDIYVHHGAGAY 171 (433)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEECcCCHHHH---------HHHHHHHHHHHhcCccccccccCCCCceEEEEECCCcC
Confidence 455667777788899999999999854443222 2566677776553 46788899999
Q ss_pred cccccC
Q psy13824 209 WTMKSS 214 (226)
Q Consensus 209 IcaesT 214 (226)
+|||-|
T Consensus 172 ~~GeEt 177 (433)
T PRK13596 172 ICGEET 177 (433)
T ss_pred CCCHHH
Confidence 998754
No 396
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=23.12 E-value=1.7e+02 Score=26.82 Aligned_cols=48 Identities=23% Similarity=0.370 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEE-Eeecccccc
Q psy13824 146 ERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL-LYSGFSWTM 211 (226)
Q Consensus 146 e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VI-LRpGPYIca 211 (226)
+..++.++++|++|+ -|+.. .+|.+ +-|+.|++.|-..| |--|||-++
T Consensus 113 ~~l~~~i~~L~~~gI-rVSLF-----idP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 113 DKLKPAIARLKDAGI-RVSLF-----IDPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHCCC-EEEEE-----eCCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 555666666666666 34442 24443 34556666666543 666666554
No 397
>PRK08444 hypothetical protein; Provisional
Probab=23.11 E-value=74 Score=30.05 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccC---------CCCeeeeeCcccHHHHHHHHHHcCCeE
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEA---------QPGTYSFDGHRDVEYFMRLAAEEGLYV 201 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEP---------e~G~FDFsG~~DLd~FI~lA~e~GL~V 201 (226)
++.+++||++|++.+.- .-.|- -|++-.-+ +....++.|++.||.+
T Consensus 151 ~e~l~~LkeAGl~~~~g----~~aEi~~~~vr~~I~p~k~~~~---~~~~i~~~a~~~Gi~~ 205 (353)
T PRK08444 151 EEVLEDMLEYGVDSMPG----GGAEIFDEEVRKKICKGKVSSE---RWLEIHKYWHKKGKMS 205 (353)
T ss_pred HHHHHHHHHhCcccCCC----CCchhcCHHHHhhhCCCCCCHH---HHHHHHHHHHHcCCCc
No 398
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=23.09 E-value=1.3e+02 Score=26.89 Aligned_cols=47 Identities=4% Similarity=-0.093 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEee
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRp 205 (226)
+...+.+..+|++.|-+ .-|=|-+|++ ++...+..++..|+.+++|+
T Consensus 23 p~~~e~~a~~G~D~v~i-------D~EHg~~~~~---~~~~~~~a~~~~g~~~~VRv 69 (249)
T TIGR03239 23 PITTEVLGLAGFDWLLL-------DGEHAPNDVL---TFIPQLMALKGSASAPVVRP 69 (249)
T ss_pred cHHHHHHHhcCCCEEEE-------ecccCCCCHH---HHHHHHHHHhhcCCCcEEEC
Confidence 34566778899998876 6677888998 89999999999999999986
No 399
>PRK08636 aspartate aminotransferase; Provisional
Probab=23.05 E-value=2.2e+02 Score=26.22 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=37.9
Q ss_pred CCCHhHHHHHHHHH-HHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 142 RSPQERWREILRKI-RSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 142 RvP~e~W~drL~km-KaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
..+.+.+.+.++.. +..+.++.-+.+- +-|.|.=..+.-+ .+.+++++|++++++||.
T Consensus 155 ~~d~~~l~~~l~~~~~~~~~~~~~i~~~-~P~NPTG~~~s~~---~~~~l~~~a~~~~~~II~ 213 (403)
T PRK08636 155 ELDEDQFFENLEKALRESSPKPKYVVVN-FPHNPTTATVEKS---FYERLVALAKKERFYIIS 213 (403)
T ss_pred ccChhhhhhHHHHHHhhccCCceEEEEe-CCCCCCCccCCHH---HHHHHHHHHHHcCcEEEE
Confidence 45555555555443 3333444333332 4488888888887 889999999999999884
No 400
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=22.88 E-value=1.2e+02 Score=30.04 Aligned_cols=47 Identities=23% Similarity=0.324 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCCEEEEeee-cC--cccCCCCe-eeeeCcccHHHHHHHHHHcCC
Q psy13824 149 REILRKIRSAGLNAVSTYVG-WS--SHEAQPGT-YSFDGHRDVEYFMRLAAEEGL 199 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~-Wn--lHEPe~G~-FDFsG~~DLd~FI~lA~e~GL 199 (226)
++.|+.||++|+|.|++.+- -+ .++.- |+ .+++ ++.+.+++|++.|+
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~i-gR~ht~e---~v~~ai~~ar~~Gf 319 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQTMNDETLKAI-GRHHTVE---DIIEKFHLAREMGF 319 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCcCCHHHHHHh-CCCCCHH---HHHHHHHHHHhCCC
Confidence 56688888888888887552 21 11111 21 3444 77788888888888
No 401
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=22.86 E-value=2.2e+02 Score=26.19 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=41.6
Q ss_pred EeeccccCC-CCCHhHHHHHHHHHHHc------CCCEEEEe--eecCcccCCCCeeeeeCcccHHHHH-HHHHHcCCeEE
Q psy13824 133 FVSGEFHYF-RSPQERWREILRKIRSA------GLNAVSTY--VGWSSHEAQPGTYSFDGHRDVEYFM-RLAAEEGLYVL 202 (226)
Q Consensus 133 ilgGeiHYf-RvP~e~W~drL~kmKaa------GlNTV~ty--V~WnlHEPe~G~FDFsG~~DLd~FI-~lA~e~GL~VI 202 (226)
+.|=.+|.- +...+.|.+.++++.+. -+..+.++ ++... + .+||+ ++.+.+ +..++.++.++
T Consensus 155 v~Glh~HvGS~~~~~~~~~~~~~~~~~~~~~~~~~~~lDiGGGf~v~~----~-~~~~~---~~~~~i~~~~~~~~~~li 226 (346)
T cd06829 155 IEGLHFHTLCEQDFDALERTLEAVEERFGEYLPQLKWLNLGGGHHITR----P-DYDVD---RLIALIKRFKEKYGVEVY 226 (346)
T ss_pred ceEEEEccCcccCHHHHHHHHHHHHHHHHHHHhcCcEEEcCCCcCCCc----C-CCCHH---HHHHHHHHHHHHhCCEEE
Confidence 445555552 33567787777776443 24555544 22221 1 14554 443333 33445589999
Q ss_pred Eeecccccccc
Q psy13824 203 LYSGFSWTMKS 213 (226)
Q Consensus 203 LRpGPYIcaes 213 (226)
+-||-|+.|.+
T Consensus 227 ~EPGR~lva~a 237 (346)
T cd06829 227 LEPGEAVALNT 237 (346)
T ss_pred EeCchhhhhcc
Confidence 99999999754
No 402
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=22.67 E-value=1.6e+02 Score=26.15 Aligned_cols=57 Identities=19% Similarity=0.309 Sum_probs=40.7
Q ss_pred CCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 141 FRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 141 fRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
+.||++++.+-++++.++|-.+|-..+.- .||.+..=+.+ +.|.+..+++|=.|++.
T Consensus 59 ~Pw~R~~~A~ll~~L~~~ga~~I~~Di~f--~~~~~~~~~~D-----~~la~al~~~~~~vvl~ 115 (310)
T PF05226_consen 59 WPWPRSVYARLLDRLAAAGAKAIGFDILF--DEPDPSNPEGD-----QALAEALRRAGNRVVLA 115 (310)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEEeee--cCCCCCCchHH-----HHHHHHHHhCCCeEEEE
Confidence 56889999999999999999999999854 44422110111 45777778888677663
No 403
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=22.62 E-value=1e+02 Score=25.16 Aligned_cols=32 Identities=19% Similarity=0.450 Sum_probs=24.0
Q ss_pred eEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEE
Q psy13824 131 FRFVSGEFHYFRSPQERWREILRKIRSAGLNAVST 165 (226)
Q Consensus 131 f~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~t 165 (226)
.+++||.+- ++.+.|+++.+++|++|+..|-.
T Consensus 87 ~i~vGG~~~---~~~~~~~~~~~~l~~~G~~~vf~ 118 (137)
T PRK02261 87 LLYVGGNLV---VGKHDFEEVEKKFKEMGFDRVFP 118 (137)
T ss_pred eEEEECCCC---CCccChHHHHHHHHHcCCCEEEC
Confidence 456777553 36788999999999999877654
No 404
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=22.60 E-value=1.8e+02 Score=25.42 Aligned_cols=48 Identities=27% Similarity=0.427 Sum_probs=25.2
Q ss_pred HHHHHHHHHcCCCEEEEeee-c--CcccCCCC-eeeeeCcccHHHHHHHHHHcCC
Q psy13824 149 REILRKIRSAGLNAVSTYVG-W--SSHEAQPG-TYSFDGHRDVEYFMRLAAEEGL 199 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~-W--nlHEPe~G-~FDFsG~~DLd~FI~lA~e~GL 199 (226)
++.+++++++|++.|.+.+. . ..|.+..| +--|+ ...+.++.+.+.|+
T Consensus 108 ~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~---~~~~~i~~~~~~g~ 159 (347)
T COG0535 108 EEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFK---RAVEAIKNLKEAGI 159 (347)
T ss_pred HHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHH---HHHHHHHHHHHcCC
Confidence 46677777788877776653 1 23445544 22333 33344444444444
No 405
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=22.54 E-value=1.6e+02 Score=27.25 Aligned_cols=64 Identities=19% Similarity=0.232 Sum_probs=41.5
Q ss_pred CeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCC-eeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 128 GRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPG-TYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 128 Gkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G-~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
+.|.+.+|==+|+ ++.++++++.|+.+|... -|-.+| ..=+...--=.+..+.|++.|+.||=.
T Consensus 28 ~~~vy~lG~iIHN--------~~vv~~L~~~Gv~~v~~~-----~~~~~g~~ViirAHGv~~~~~~~l~~~g~~viDa 92 (281)
T PF02401_consen 28 PGPVYTLGPIIHN--------PQVVERLEKRGVKVVDDI-----DEVPEGDTVIIRAHGVPPEVYEELKERGLEVIDA 92 (281)
T ss_dssp SS-EEECS-SSS---------HHHHHHHHHCTEEEESSG-----CGS-TTEEEEE-TT---HHHHHHHHHTTEEEEE-
T ss_pred CCCEEEecCcccC--------HHHHHHHHHCCCEEecCc-----cccCCCCEEEEeCCCCCHHHHHHHHHcCCEEEEC
Confidence 3588889989999 899999999999998763 332344 454543223357888888889887743
No 406
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=22.43 E-value=1.7e+02 Score=27.80 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=23.5
Q ss_pred HHcCCCEEEEeee-cCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 156 RSAGLNAVSTYVG-WSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 156 KaaGlNTV~tyV~-WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
-+.|.++|-++.. -++.-+. ..|... +|.+.++.|+++|.++.+
T Consensus 23 i~~GADaVY~G~~~~~~R~~a-~nfs~~---~l~e~i~~ah~~gkk~~V 67 (347)
T COG0826 23 IAAGADAVYIGEKEFGLRRRA-LNFSVE---DLAEAVELAHSAGKKVYV 67 (347)
T ss_pred HHcCCCEEEeCCccccccccc-ccCCHH---HHHHHHHHHHHcCCeEEE
Confidence 3445666666655 3333333 233333 566777777777766544
No 407
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.41 E-value=1.9e+02 Score=19.58 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=38.2
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeee--eeCcccHHHHHHHHHHcCCeE
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYS--FDGHRDVEYFMRLAAEEGLYV 201 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FD--FsG~~DLd~FI~lA~e~GL~V 201 (226)
+..-.+..+.+.+.|+|...++..=...+ ..|... ++...|.+++++..++.|..|
T Consensus 12 ~G~L~~l~~~l~~~~i~i~~~~~~~~~~~-~~~~~~i~v~~~~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 12 PGVIAEVTQILGDAGISIKNIEILEIREG-IGGILRISFKTQEDRERAKEILKEAGYEV 69 (69)
T ss_pred CCHHHHHHHHHHHcCCCceeeEeEEeecC-CcEEEEEEECCHHHHHHHHHHHHHcCCcC
Confidence 34567888999999999988874311001 245444 443458899999999999764
No 408
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=22.40 E-value=6.3e+02 Score=23.46 Aligned_cols=80 Identities=13% Similarity=0.089 Sum_probs=43.5
Q ss_pred eccccCCCCCHhHHHHHHHHHHHcCCCEEEEeee--cCccc------------------CCCCeeeeeCc----------
Q psy13824 135 SGEFHYFRSPQERWREILRKIRSAGLNAVSTYVG--WSSHE------------------AQPGTYSFDGH---------- 184 (226)
Q Consensus 135 gGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~--WnlHE------------------Pe~G~FDFsG~---------- 184 (226)
|+...-|=++++.+.+.++.+++.|++.+=..+. -+... ++....|+.|.
T Consensus 145 ~~~~skFG~~~~~~~~~l~~~~~~~l~l~GlhfH~GS~~~~~~~~~~~~~~~~~l~~~~~~~~~idiGGGf~~~y~~~~~ 224 (368)
T cd06840 145 GGPESKFGLDVDELDEARDLAKKAGIIVIGLHAHSGSGVEDTDHWARHGDYLASLARHFPAVRILNVGGGLGIPEAPGGR 224 (368)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEecCcccCCCCCCCC
Confidence 3334445566777777777777777665444332 11110 23344455442
Q ss_pred -ccHH---HHHHHHH-Hc-CCeEEEeeccccccccC
Q psy13824 185 -RDVE---YFMRLAA-EE-GLYVLLYSGFSWTMKSS 214 (226)
Q Consensus 185 -~DLd---~FI~lA~-e~-GL~VILRpGPYIcaesT 214 (226)
.|++ +.|+.+. .. ++.+++-||-|+.|.+.
T Consensus 225 ~~~~~~~~~~i~~~~~~~~~~~l~~EPGR~lva~ag 260 (368)
T cd06840 225 PIDLDALDAALAAAKAAHPQYQLWMEPGRFIVAESG 260 (368)
T ss_pred CCCHHHHHHHHHHHHhhCCCcEEEEecCceeeecce
Confidence 1333 3333332 22 68899999999987543
No 409
>PRK05926 hypothetical protein; Provisional
Probab=22.36 E-value=71 Score=30.37 Aligned_cols=46 Identities=22% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEeeecC---------cccCCCCeeeeeCcccHHHHHHHHHHcCCeE
Q psy13824 149 REILRKIRSAGLNAVSTYVGWS---------SHEAQPGTYSFDGHRDVEYFMRLAAEEGLYV 201 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~Wn---------lHEPe~G~FDFsG~~DLd~FI~lA~e~GL~V 201 (226)
++.|+++|++|++++.. + ...-.|++-..+ +-.+.++.|++.||.+
T Consensus 169 ~e~l~~LkeAGl~~~~g----~GaEi~~e~~r~~~~p~~~t~~---e~l~~i~~a~~~Gi~~ 223 (370)
T PRK05926 169 KEVLQTLKIAGLDSIPG----GGAEILVDEIRETLAPGRLSSQ---GFLEIHKTAHSLGIPS 223 (370)
T ss_pred HHHHHHHHHcCcCccCC----CCchhcCHHHHHhhCCCCCCHH---HHHHHHHHHHHcCCcc
No 410
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=22.29 E-value=2.4e+02 Score=26.48 Aligned_cols=67 Identities=10% Similarity=0.055 Sum_probs=41.8
Q ss_pred eeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeee-cCc--ccCCCCeee-e------eCcccHHHHHHHHHHcC
Q psy13824 129 RPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVG-WSS--HEAQPGTYS-F------DGHRDVEYFMRLAAEEG 198 (226)
Q Consensus 129 kpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~-Wnl--HEPe~G~FD-F------sG~~DLd~FI~lA~e~G 198 (226)
|+.+|+|+..+= ...++.+|++|+.++.++.. .+. +=....++- . +.-.|.++++++|++++
T Consensus 3 k~iLi~g~g~~a--------~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~ 74 (451)
T PRK08591 3 DKILIANRGEIA--------LRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITG 74 (451)
T ss_pred ceEEEECCCHHH--------HHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhC
Confidence 455666665433 56778999999999987543 221 000011211 1 12247889999999999
Q ss_pred CeEEE
Q psy13824 199 LYVLL 203 (226)
Q Consensus 199 L~VIL 203 (226)
+-+|+
T Consensus 75 id~I~ 79 (451)
T PRK08591 75 ADAIH 79 (451)
T ss_pred CCEEE
Confidence 99876
No 411
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=22.07 E-value=1.8e+02 Score=26.83 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=42.1
Q ss_pred CeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeec
Q psy13824 128 GRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSG 206 (226)
Q Consensus 128 Gkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpG 206 (226)
|+++++.+..++. ....++....+++.|++..... -.+++| +.+ ++++.++.+++.|.-+|+-.|
T Consensus 22 gr~lvVt~~~~~~----~~~~~~v~~~L~~~~i~~~~~~----~~~~~p---~~~---~v~~~~~~~~~~~~D~IIaiG 86 (366)
T PF00465_consen 22 GRVLVVTDPSLSK----SGLVDRVLDALEEAGIEVQVFD----GVGPNP---TLE---DVDEAAEQARKFGADCIIAIG 86 (366)
T ss_dssp TEEEEEEEHHHHH----HTHHHHHHHHHHHTTCEEEEEE----EESSS----BHH---HHHHHHHHHHHTTSSEEEEEE
T ss_pred CCEEEEECchHHh----CccHHHHHHHHhhCceEEEEEe----cCCCCC---cHH---HHHHHHHHHHhcCCCEEEEcC
Confidence 5555555553332 1256666667899999874442 123333 444 899999999999999998765
No 412
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=22.06 E-value=2.7e+02 Score=24.41 Aligned_cols=13 Identities=15% Similarity=0.077 Sum_probs=7.1
Q ss_pred HHHHHHHHHcCCe
Q psy13824 188 EYFMRLAAEEGLY 200 (226)
Q Consensus 188 d~FI~lA~e~GL~ 200 (226)
++.++..++.|+.
T Consensus 123 ~e~l~~Lk~aG~~ 135 (296)
T TIGR00433 123 PEQAKRLKDAGLD 135 (296)
T ss_pred HHHHHHHHHcCCC
Confidence 3455555555655
No 413
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=22.04 E-value=1.6e+02 Score=23.63 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=34.2
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHH
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLA 194 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA 194 (226)
.+.-++..+.++++|++.|-+.|. .|++-|.|...++.+-+..
T Consensus 150 ~~~~~~~~~~a~~~gv~GvP~~vv-------~g~~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 150 KAALEEDTAEARQLGVFGVPTFVV-------NGKYRFFGADRLDELEDAL 192 (193)
T ss_dssp HHHHHHHHHHHHHTTCSSSSEEEE-------TTTEEEESCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcccCEEEE-------CCEEEEECCCCHHHHHHHh
Confidence 366777888899999998888776 5668899998888776654
No 414
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=21.97 E-value=2.7e+02 Score=26.03 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=42.9
Q ss_pred eeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 129 RPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 129 kpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
++.+++.+..-. + ...+++....+++.|++.. . .+-.||+|- .+ ++++.++.+++.+.-+|+..|=
T Consensus 31 ~~~lvvtd~~~~-~--~g~~~~v~~~L~~~g~~~~-~---~~~v~~~p~---~~---~v~~~~~~~~~~~~D~IIaiGG 96 (382)
T PRK10624 31 KKALIVTDKTLV-K--CGVVAKVTDVLDAAGLAYE-I---YDGVKPNPT---IE---VVKEGVEVFKASGADYLIAIGG 96 (382)
T ss_pred CEEEEEeCcchh-h--CcchHHHHHHHHHCCCeEE-E---eCCCCCCcC---HH---HHHHHHHHHHhcCCCEEEEeCC
Confidence 566666664211 1 2356666777888898642 2 245566663 34 7788889999999998887663
No 415
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=21.93 E-value=2.1e+02 Score=25.91 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=40.7
Q ss_pred eEEeeccccCCC-C-CHhHHHHHHHH-------HHHcCC--CEEEE--eeecCcccCCCCeeeeeCcccHHHHHHHHH-H
Q psy13824 131 FRFVSGEFHYFR-S-PQERWREILRK-------IRSAGL--NAVST--YVGWSSHEAQPGTYSFDGHRDVEYFMRLAA-E 196 (226)
Q Consensus 131 f~ilgGeiHYfR-v-P~e~W~drL~k-------mKaaGl--NTV~t--yV~WnlHEPe~G~FDFsG~~DLd~FI~lA~-e 196 (226)
..+.|=..|.-. . +.+.+.+.+++ +++.|. ..|.. +...... ...+|++ .+-+-|..+. +
T Consensus 162 l~l~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~l~~~g~~~~~id~GGG~~~~y~---~~~~~~~---~~~~~i~~~~~~ 235 (368)
T cd06810 162 LRLVGLHFHVGSQILDLETIVQALSDARELIEELVEMGFPLEMLDLGGGLGIPYD---EQPLDFE---EYAALINPLLKK 235 (368)
T ss_pred CcEEEEEEcCCcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCcccccC---CCCCCHH---HHHHHHHHHHHH
Confidence 444555555542 2 35656655443 333354 46776 3444444 2345554 3333233332 3
Q ss_pred -----cCCeEEEeecccccccc
Q psy13824 197 -----EGLYVLLYSGFSWTMKS 213 (226)
Q Consensus 197 -----~GL~VILRpGPYIcaes 213 (226)
.+..+++.||.|+.+.+
T Consensus 236 ~~~~~~~~~l~~EpGr~l~~~a 257 (368)
T cd06810 236 YFPNDPGVTLILEPGRYIVAQA 257 (368)
T ss_pred HhccCCCcEEEEecChhhhhhc
Confidence 25789999999998654
No 416
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=21.89 E-value=2.2e+02 Score=25.77 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=29.1
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeE
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYV 201 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~V 201 (226)
-+...+-+++++++|++.|.+.+.-. +|. +.+ ++.++++.++++|+.|
T Consensus 138 ~~~vl~~i~~l~~~G~~~v~in~vv~-----~g~-n~~---ei~~l~~~~~~~gv~~ 185 (334)
T TIGR02666 138 LEQVLAGIDAALAAGLEPVKLNTVVM-----RGV-NDD---EIVDLAEFAKERGVTL 185 (334)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEe-----CCC-CHH---HHHHHHHHHHhcCCeE
Confidence 35556667777777887566544221 121 122 6778888888888764
No 417
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=21.85 E-value=2.7e+02 Score=26.23 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=44.8
Q ss_pred CeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 128 GRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 128 Gkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
+++.+++.+.. -.+ ..++++....+++.|++.. ...-.||.| +.+ .+++.++++++++.-+|+-.|=
T Consensus 21 ~~k~liVtd~~-~~~--~g~~~~v~~~L~~~gi~~~----~f~~v~~~p---~~~---~v~~~~~~~~~~~~D~IIaiGG 87 (398)
T cd08178 21 KKRAFIVTDRF-MVK--LGYVDKVIDVLKRRGVETE----VFSDVEPDP---SLE---TVRKGLELMNSFKPDTIIALGG 87 (398)
T ss_pred CCeEEEEcChh-HHh--CccHHHHHHHHHHCCCeEE----EecCCCCCc---CHH---HHHHHHHHHHhcCCCEEEEeCC
Confidence 35666666532 111 2366777788889998643 234456665 233 7789999999999999998885
No 418
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=21.82 E-value=2.1e+02 Score=26.21 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=29.9
Q ss_pred EEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 162 AVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 162 TV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
+--+++. |-|.|.=-.++-+ .+++++++|+++|++||.
T Consensus 167 ~k~i~l~-nP~NPTG~~~s~~---~~~~l~~~a~~~~~~ii~ 204 (396)
T PRK09147 167 TQLLFVC-SPGNPTGAVLPLD---DWKKLFALSDRYGFVIAS 204 (396)
T ss_pred cEEEEEc-CCCCCcCccCCHH---HHHHHHHHHHHcCeEEEe
Confidence 3334455 7888887788777 899999999999999875
No 419
>PRK09469 glnA glutamine synthetase; Provisional
Probab=21.78 E-value=4.3e+02 Score=26.05 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=45.6
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCC-CCeeeeeCc-----------ccHHHHH-HHHHHcCCeEEEeeccccc
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQ-PGTYSFDGH-----------RDVEYFM-RLAAEEGLYVLLYSGFSWT 210 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe-~G~FDFsG~-----------~DLd~FI-~lA~e~GL~VILRpGPYIc 210 (226)
.+.-++..+.|+++|++.-.. .||-. +|||..+=. .-+...+ +.|+++|+.+-.-|=|+..
T Consensus 190 ~~~~~~i~~~l~~~Gi~v~~~-----h~E~g~~GQ~Ei~l~~~d~L~aaD~~~~~k~~vk~va~~~g~~atFmpKP~~~ 263 (469)
T PRK09469 190 QDIRSAMCLVMEEMGLVVEAH-----HHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHAFGKTATFMPKPMFG 263 (469)
T ss_pred HHHHHHHHHHHHHCCCCcEEe-----eCCCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccCC
Confidence 556777888889999998887 88988 599987521 1112223 4688999999999999876
No 420
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=21.71 E-value=2.7e+02 Score=26.00 Aligned_cols=68 Identities=21% Similarity=0.308 Sum_probs=41.4
Q ss_pred CeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 128 GRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 128 Gkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
|++.+|++|.--.... ..+++....+++.|++.+ .+.-.+|.|. . .++++.++++++.+.-+|+-.|=
T Consensus 28 ~~r~livt~~~~~~~~--~~~~~v~~~L~~~g~~~~----~~~~v~~~p~---~---~~v~~~~~~~~~~~~D~IIaiGG 95 (382)
T cd08187 28 GKKVLLVYGGGSIKKN--GLYDRVIASLKEAGIEVV----ELGGVEPNPR---L---ETVREGIELCKEEKVDFILAVGG 95 (382)
T ss_pred CCEEEEEeCCcHHHhc--CcHHHHHHHHHHcCCeEE----EECCccCCCC---H---HHHHHHHHHHHHcCCCEEEEeCC
Confidence 5677777664333222 334556667778888633 2344555552 1 26677888888888888876663
No 421
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=21.70 E-value=2.2e+02 Score=25.96 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEE
Q psy13824 148 WREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 148 W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VI 202 (226)
-++.++.+|+.|+. |+.++.=.+--|..|..+.+ .+.++++.+.+.|...|
T Consensus 122 ~~~~v~~ak~~g~~-v~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~G~d~i 172 (287)
T PRK05692 122 FEPVAEAAKQAGVR-VRGYVSCVLGCPYEGEVPPE---AVADVAERLFALGCYEI 172 (287)
T ss_pred HHHHHHHHHHcCCE-EEEEEEEEecCCCCCCCCHH---HHHHHHHHHHHcCCcEE
Confidence 45677777888874 44443322333455555555 77777888888887754
No 422
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=21.70 E-value=1.2e+02 Score=26.48 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=26.0
Q ss_pred CCCeeeee-CcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 175 QPGTYSFD-GHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 175 e~G~FDFs-G~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
..|..+++ +..++..+++.|++.|++|++..|-
T Consensus 35 ~~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg 68 (253)
T cd06545 35 ANGTLNANPVRSELNSVVNAAHAHNVKILISLAG 68 (253)
T ss_pred CCCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 45777774 2347889999999999999998874
No 423
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=21.63 E-value=3.4e+02 Score=23.11 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=0.0
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEeeecCc--------------ccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEee
Q psy13824 142 RSPQERWREILRKIRSAGLNAVSTYVGWSS--------------HEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 142 RvP~e~W~drL~kmKaaGlNTV~tyV~Wnl--------------HEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRp 205 (226)
|...+.-+..+++++++|+..++++++=+- .+ .+.+.++.|++.|+.|-+.+
T Consensus 63 ~~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~------------~~~~~v~~ak~~g~~v~~~~ 128 (237)
T PF00682_consen 63 RANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALE------------RIEEAVKYAKELGYEVAFGC 128 (237)
T ss_dssp ESCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHH------------HHHHHHHHHHHTTSEEEEEE
T ss_pred eehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHH------------HHHHHHHHHHhcCCceEeCc
No 424
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=21.61 E-value=4e+02 Score=20.88 Aligned_cols=56 Identities=27% Similarity=0.309 Sum_probs=41.6
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
.+..++-...++++|+..+.+ +.-+...|.|..|==+| .++++-+++++++.-+|+
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~-~~q~~~~~~p~~~iG~G--K~eei~~~~~~~~~d~vv 62 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGT-VVQKRRKPDPKTYIGSG--KVEEIKELIEELDADLVV 62 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEE-EEecCCCCCcceeechh--HHHHHHHHHhhcCCCEEE
Confidence 345666777788899887765 44566667776665455 788999999999999776
No 425
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=21.56 E-value=1.3e+02 Score=25.30 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=49.6
Q ss_pred CCeE-EECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEee--ecCcccCCCCeeeeeCcccHHHHHHHHHHc
Q psy13824 121 ANTF-RMDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYV--GWSSHEAQPGTYSFDGHRDVEYFMRLAAEE 197 (226)
Q Consensus 121 ~~~F-~ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV--~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~ 197 (226)
..++ +++...+++-+|.+++.+ --+.|++.+++..+.|.+.+++.. .|...+ +.=.|. +.++.++.+-..
T Consensus 80 ~gqL~~~~~~~~Y~~~g~f~~~~-~i~~~~~~~~~a~~~G~~~lRv~ge~~w~~~~---~~~~l~---~yE~~ln~~~~~ 152 (191)
T PF14417_consen 80 SGQLELLDAEEWYLPDGRFDPAR-MIAFWRAALEQALAEGYRGLRVIGEMTWALRS---GWEELL---RYEALLNRLFAE 152 (191)
T ss_pred CCCEEEecchhhhccCCCcCHHH-HHHHHHHHHHHHHhCCCCcEEEEEechhhccc---cHHHHH---HHHHHHHHHhcC
Confidence 3455 455555666666666522 257899999999999999999984 588666 322333 667777766655
Q ss_pred CCeEEE
Q psy13824 198 GLYVLL 203 (226)
Q Consensus 198 GL~VIL 203 (226)
.=...|
T Consensus 153 ~~~~~l 158 (191)
T PF14417_consen 153 HPFTAL 158 (191)
T ss_pred CCEEEE
Confidence 533344
No 426
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=21.53 E-value=1e+02 Score=28.98 Aligned_cols=28 Identities=21% Similarity=0.055 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHcCCeEEEeeccccccccC
Q psy13824 186 DVEYFMRLAAEEGLYVLLYSGFSWTMKSS 214 (226)
Q Consensus 186 DLd~FI~lA~e~GL~VILRpGPYIcaesT 214 (226)
|=++|++.+++.|+.|+++ |||..++-+
T Consensus 252 w~~~f~~~~~~~g~~V~~~-~~~~~~~~~ 279 (309)
T cd08613 252 WPNRFLARMEAAGTRVILV-GPYTGGEFS 279 (309)
T ss_pred CCHHHHHHHHHcCCeEEEE-ecccCCccc
Confidence 4489999999999999996 777655433
No 427
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=21.48 E-value=2.1e+02 Score=26.32 Aligned_cols=18 Identities=6% Similarity=0.226 Sum_probs=8.6
Q ss_pred HHHHHHHHHcCCCEEEEe
Q psy13824 149 REILRKIRSAGLNAVSTY 166 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~ty 166 (226)
.+.++..|+.|.+.|+.|
T Consensus 134 ~~qi~~A~~~GAd~VELh 151 (237)
T TIGR00559 134 KDQISAAAEVGADRIEIH 151 (237)
T ss_pred HHHHHHHHHhCcCEEEEe
Confidence 344444445555555444
No 428
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=21.36 E-value=1.5e+02 Score=26.00 Aligned_cols=55 Identities=20% Similarity=0.264 Sum_probs=41.9
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeee-CcccHHHHHHHHHHcCCe
Q psy13824 143 SPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFD-GHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFs-G~~DLd~FI~lA~e~GL~ 200 (226)
..+..+++.++.++++|+..+.+|....- ....|..+ |..|=...+.+|++.|+.
T Consensus 49 ~~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p 104 (212)
T cd06418 49 LSKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGFP 104 (212)
T ss_pred CCCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCCC
Confidence 35678899999999999999999877654 23333333 566778889999998876
No 429
>PF08732 HIM1: HIM1; InterPro: IPR014843 HIM1 (high induction of mutagenesis protein 1) plays a role in the control of spontaneous and induced mutagenesis []. It is thought to participate in the control of processing of mutational intermediates appearing during error-prone bypass of DNA damage.
Probab=21.33 E-value=59 Score=32.04 Aligned_cols=15 Identities=27% Similarity=0.158 Sum_probs=12.1
Q ss_pred eEEEeeccccccccC
Q psy13824 200 YVLLYSGFSWTMKSS 214 (226)
Q Consensus 200 ~VILRpGPYIcaesT 214 (226)
-|||||||.+.--.+
T Consensus 291 lvILRPGplvG~h~~ 305 (410)
T PF08732_consen 291 LVILRPGPLVGEHGS 305 (410)
T ss_pred EEEecCccccCCCCC
Confidence 499999999985544
No 430
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=21.31 E-value=4.8e+02 Score=21.67 Aligned_cols=64 Identities=16% Similarity=0.267 Sum_probs=36.1
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeeecCcccC-----CCCeeeeeCcccHHHHHHHHHHcCCe-EEEeeccccccc
Q psy13824 145 QERWREILRKIRSAGLNAVSTYVGWSSHEA-----QPGTYSFDGHRDVEYFMRLAAEEGLY-VLLYSGFSWTMK 212 (226)
Q Consensus 145 ~e~W~drL~kmKaaGlNTV~tyV~WnlHEP-----e~G~FDFsG~~DLd~FI~lA~e~GL~-VILRpGPYIcae 212 (226)
.+.=...++.+|++|+..+- +--|..... .|....|.... .+-+..++.|+. +++|||.|....
T Consensus 80 ~~~~~~li~Aa~~agVk~~v-~ss~~~~~~~~~~~~p~~~~~~~k~---~ie~~l~~~~i~~t~i~~g~f~e~~ 149 (233)
T PF05368_consen 80 LEQQKNLIDAAKAAGVKHFV-PSSFGADYDESSGSEPEIPHFDQKA---EIEEYLRESGIPYTIIRPGFFMENL 149 (233)
T ss_dssp HHHHHHHHHHHHHHT-SEEE-ESEESSGTTTTTTSTTHHHHHHHHH---HHHHHHHHCTSEBEEEEE-EEHHHH
T ss_pred hhhhhhHHHhhhccccceEE-EEEecccccccccccccchhhhhhh---hhhhhhhhccccceeccccchhhhh
Confidence 45567788999999976663 322322221 12222343222 333445666998 899999998754
No 431
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=21.30 E-value=2.2e+02 Score=28.27 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=41.0
Q ss_pred ccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 138 FHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 138 iHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
..|-..|.+..+..++++.++|+..+++..+-|- . .++...++.|+++|+.|..
T Consensus 87 ~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd---------~---~n~~~~i~~ak~~G~~v~~ 140 (467)
T PRK14041 87 VGYRHYADDVVELFVKKVAEYGLDIIRIFDALND---------I---RNLEKSIEVAKKHGAHVQG 140 (467)
T ss_pred cCcccccchhhHHHHHHHHHCCcCEEEEEEeCCH---------H---HHHHHHHHHHHHCCCEEEE
Confidence 3443346666777799999999999999887664 1 3788889999999988763
No 432
>PRK12414 putative aminotransferase; Provisional
Probab=21.23 E-value=96 Score=28.37 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=26.4
Q ss_pred EEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 162 AVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 162 TV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
+--+++. +-|.|.=-.+.=+ ++++++++|+++|++||.
T Consensus 163 ~~~v~i~-~p~NPTG~~~s~~---~~~~i~~~a~~~~~~ii~ 200 (384)
T PRK12414 163 TRMIIVN-TPHNPSATVFSAA---DLARLAQLTRNTDIVILS 200 (384)
T ss_pred cEEEEEc-CCCCCCCcCCCHH---HHHHHHHHHHHCCeEEEE
Confidence 3334455 6677755555544 889999999999998875
No 433
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=21.15 E-value=1.5e+02 Score=24.05 Aligned_cols=41 Identities=27% Similarity=0.502 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCe
Q psy13824 149 REILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
+..-++++++|++.|.. . .|-|-+.| -+.+|++.|++.||.
T Consensus 76 ~~la~ra~~~gi~~vvf-------D--rg~~~yhG--rV~a~a~~are~Gl~ 116 (117)
T PRK05593 76 KLIAERAKAKGIKQVVF-------D--RGGYKYHG--RVKALADAAREAGLK 116 (117)
T ss_pred HHHHHHHHHCCCCEEEE-------c--CCCCcccH--HHHHHHHHHHHhCCC
Confidence 34557789999999754 2 45666665 789999999999985
No 434
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=21.11 E-value=2.2e+02 Score=23.40 Aligned_cols=74 Identities=11% Similarity=0.099 Sum_probs=45.8
Q ss_pred ECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCc-ccCCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 126 MDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSS-HEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 126 ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~Wnl-HEPe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
+.+...+++|...|....+|+.|.+-+..++...++...+.++=.. .++-+. .|. .-++.+-+++++.|..+|-
T Consensus 42 l~~~d~ii~gspty~~g~~p~~~~~fl~~l~~~~l~gk~v~~fg~g~~~~y~~--~f~--~a~~~l~~~l~~~G~~~ig 116 (167)
T TIGR01752 42 LNAYDKLILGTPTWGVGELQEDWEDFLPTLEELDFTGKTVALFGLGDQEGYSE--TFC--DGMGILYDKIKARGAKVVG 116 (167)
T ss_pred HhhCCEEEEEecCCCCCcCcHHHHHHHHHhhcCCCCCCEEEEEecCCCCcccH--HHH--HHHHHHHHHHHHcCCeEEc
Confidence 4456678888888876766788999888888777765555544211 011111 111 1245666777888988654
No 435
>TIGR01699 XAPA xanthosine phosphorylase. (TIGR01698, TIGR01700).
Probab=21.11 E-value=1.7e+02 Score=26.45 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=31.4
Q ss_pred EEECCeeeEEeeccccCCC-CCHhHHHHHHHHHHHcCCCEEE
Q psy13824 124 FRMDGRPFRFVSGEFHYFR-SPQERWREILRKIRSAGLNAVS 164 (226)
Q Consensus 124 F~ldGkpf~ilgGeiHYfR-vP~e~W~drL~kmKaaGlNTV~ 164 (226)
-.++|++..++.|..|+.. ....+-.--++.||+.|+..|-
T Consensus 46 G~l~g~~Vv~~~Gr~h~y~g~~~~~~~~~i~~l~~lGv~~iI 87 (248)
T TIGR01699 46 GHLQGVPVVCMKGRGHFYEGRGMTIMTDAIRTFKLLGCELLF 87 (248)
T ss_pred EEECCEEEEEEeCCCcccCCcchhhhcchHHHHHHcCCCEEE
Confidence 3689999999999999654 3455555568899999997653
No 436
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=21.02 E-value=2.2e+02 Score=23.73 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=44.1
Q ss_pred CCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCC---CEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcC-CeEE
Q psy13824 127 DGRPFRFVSGEFHYFRSPQERWREILRKIRSAGL---NAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEG-LYVL 202 (226)
Q Consensus 127 dGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGl---NTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~G-L~VI 202 (226)
.+.++-|+-+++|. .+-...-+..++.+++.|+ |.....| ||.|+.- -.++.+.+.| ...+
T Consensus 2 ~~~ri~IV~s~~n~-~i~~~ll~~a~~~l~~~g~~~~~i~~~~V--------PGa~ElP------~a~~~l~~~~~~Dav 66 (144)
T PF00885_consen 2 SGLRIAIVVSRFNE-EITDRLLEGALEELKRHGVAEENIEVIRV--------PGAFELP------LAAKRLAESGRYDAV 66 (144)
T ss_dssp TTEEEEEEEESTTH-HHHHHHHHHHHHHHHHTTTTGGCEEEEEE--------SSGGGHH------HHHHHHHHCSTESEE
T ss_pred CCCEEEEEEEeccH-HHHHHHHHHHHHHHHHcCCCccceEEEEc--------CCHHHHH------HHHHHHhcccCccEE
Confidence 46677888888877 4556677888999999999 5555544 5555543 2333333333 5566
Q ss_pred Eeeccccccc
Q psy13824 203 LYSGFSWTMK 212 (226)
Q Consensus 203 LRpGPYIcae 212 (226)
+..|--|-|+
T Consensus 67 i~lG~VI~G~ 76 (144)
T PF00885_consen 67 IALGCVIRGE 76 (144)
T ss_dssp EEEEEEE--S
T ss_pred EEeccccCCC
Confidence 6666555554
No 437
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=20.97 E-value=2.5e+02 Score=22.77 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=10.1
Q ss_pred cHHHHHHHHHHc-CCeEEEe
Q psy13824 186 DVEYFMRLAAEE-GLYVLLY 204 (226)
Q Consensus 186 DLd~FI~lA~e~-GL~VILR 204 (226)
.++++++.+++. |+.+++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~ 86 (275)
T cd01292 67 AIEAVAEAARASAGIRVVLG 86 (275)
T ss_pred HHHHHHHHHHHhcCeeeEEe
Confidence 455555555555 5555443
No 438
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=20.95 E-value=2.8e+02 Score=25.52 Aligned_cols=55 Identities=11% Similarity=-0.001 Sum_probs=38.7
Q ss_pred HHHHHcCCCEEEEeeecCcccCCCCeeeeeCc------ccHHHHHHHHHHcCCeEEEeeccccc
Q psy13824 153 RKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGH------RDVEYFMRLAAEEGLYVLLYSGFSWT 210 (226)
Q Consensus 153 ~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~------~DLd~FI~lA~e~GL~VILRpGPYIc 210 (226)
..+++.|++.|...+. .. ...|+..|.|. ..+.+-|+.+++.|++|++-+|=+-.
T Consensus 19 ~~~~~~g~~~v~lAFi-~~--~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g 79 (294)
T cd06543 19 TYAAATGVKAFTLAFI-VA--SGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASG 79 (294)
T ss_pred HHHHHcCCCEEEEEEE-Ec--CCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCC
Confidence 5677899999988754 11 13455555542 35567788999999999998886654
No 439
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=20.93 E-value=1.8e+02 Score=27.27 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=25.2
Q ss_pred ccCCCCCHhHHHHHHHHHHHcCCCEEEEee
Q psy13824 138 FHYFRSPQERWREILRKIRSAGLNAVSTYV 167 (226)
Q Consensus 138 iHYfRvP~e~W~drL~kmKaaGlNTV~tyV 167 (226)
....+.+.+.-.+.++.+.++|++.|++..
T Consensus 17 ~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~ 46 (337)
T PRK08195 17 AVRHQYTLEQVRAIARALDAAGVPVIEVTH 46 (337)
T ss_pred CCCCccCHHHHHHHHHHHHHcCCCEEEeec
Confidence 334567889999999999999999999964
No 440
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=20.74 E-value=1.8e+02 Score=26.53 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=48.5
Q ss_pred eeeEEe-ec-cccC-CCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCC---------CeeeeeCcccHHHHHHHHHH
Q psy13824 129 RPFRFV-SG-EFHY-FRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQP---------GTYSFDGHRDVEYFMRLAAE 196 (226)
Q Consensus 129 kpf~il-gG-eiHY-fRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~---------G~FDFsG~~DLd~FI~lA~e 196 (226)
+|.+++ -| +-.. -+||.+.|.+..+++++-| .++-++|+-.|-+. +.....|...|+++..+.+.
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~---~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~ 251 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKG---YQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAG 251 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCC---CEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhc
Confidence 354444 34 3323 3899999999999999999 44455575544332 22226788888888877766
Q ss_pred cCCeEEEeecc
Q psy13824 197 EGLYVLLYSGF 207 (226)
Q Consensus 197 ~GL~VILRpGP 207 (226)
.++.|-.--||
T Consensus 252 a~l~I~~DSg~ 262 (334)
T COG0859 252 ADLVIGNDSGP 262 (334)
T ss_pred CCEEEccCChH
Confidence 66644443333
No 441
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=20.70 E-value=1.7e+02 Score=26.42 Aligned_cols=46 Identities=4% Similarity=-0.058 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEee
Q psy13824 150 EILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYS 205 (226)
Q Consensus 150 drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRp 205 (226)
...+.+..+|++.|-+ .-|=|-||.+ ++...+..|+..|+.+++|+
T Consensus 31 ~~~e~~a~~G~D~v~i-------D~EHg~~~~~---~~~~~i~a~~~~g~~~lVRv 76 (256)
T PRK10558 31 ITTEVLGLAGFDWLVL-------DGEHAPNDVS---TFIPQLMALKGSASAPVVRV 76 (256)
T ss_pred HHHHHHHhcCCCEEEE-------ccccCCCCHH---HHHHHHHHHhhcCCCcEEEC
Confidence 4556777888888876 6667788888 89999999999999999985
No 442
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=20.61 E-value=96 Score=27.78 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCCEEEEeee-cCcccCCC-C---eeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 150 EILRKIRSAGLNAVSTYVG-WSSHEAQP-G---TYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 150 drL~kmKaaGlNTV~tyV~-WnlHEPe~-G---~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
..+++++++|++.|.+.++ -..|-..- | ...++ .+.+.++.|+++|+.|.+
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~---~~~~~i~~ak~~G~~v~~ 137 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLA---MIRDSVAYLKSHGREVIF 137 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHH---HHHHHHHHHHHcCCeEEE
Confidence 4567777788887777665 33331000 0 11122 456677777777777655
No 443
>PRK05927 hypothetical protein; Provisional
Probab=20.60 E-value=77 Score=29.86 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCC-----EEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeE
Q psy13824 149 REILRKIRSAGLN-----AVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYV 201 (226)
Q Consensus 149 ~drL~kmKaaGlN-----TV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~V 201 (226)
++.++++|++|+. -.+|...=-.+.=.|+++..+ +-.+.++.|++.||.+
T Consensus 147 ~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~---~rl~~i~~A~~lGi~~ 201 (350)
T PRK05927 147 EQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPD---GWIQFHKLAHRLGFRS 201 (350)
T ss_pred HHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHH---HHHHHHHHHHHcCCCc
No 444
>KOG3833|consensus
Probab=20.50 E-value=1e+02 Score=30.27 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCe---EEEee
Q psy13824 147 RWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLY---VLLYS 205 (226)
Q Consensus 147 ~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~---VILRp 205 (226)
.|++.+++++..|+ .++..-+=-..|..|+.|. |+..+++++...||. +-|||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 49999999999998 6777778888999998874 778999999999986 33665
No 445
>PRK12999 pyruvate carboxylase; Reviewed
Probab=20.44 E-value=2.3e+02 Score=31.17 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=40.1
Q ss_pred ccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEE
Q psy13824 138 FHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL 202 (226)
Q Consensus 138 iHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VI 202 (226)
+-|.+.|....++.+++++++|++.+++...-|..+ .+...++.+++.|..+-
T Consensus 619 vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd~~------------~~~~~i~~vk~~g~~~~ 671 (1146)
T PRK12999 619 VGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNWVE------------NMRVAIDAVRETGKIAE 671 (1146)
T ss_pred ccccCCCchHHHHHHHHHHHcCCCEEEEeccCChHH------------HHHHHHHHHHHcCCeEE
Confidence 446677888889999999999999999987554432 46677777777776533
No 446
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=20.43 E-value=87 Score=24.00 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=17.8
Q ss_pred eeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 178 TYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 178 ~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
..=.||+.|+...++.+++.|..|++
T Consensus 99 ivLvSgD~Df~~~v~~l~~~g~~V~v 124 (146)
T PF01936_consen 99 IVLVSGDSDFAPLVRKLRERGKRVIV 124 (146)
T ss_dssp EEEE---GGGHHHHHHHHHH--EEEE
T ss_pred EEEEECcHHHHHHHHHHHHcCCEEEE
Confidence 34468999999999999999998876
No 447
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=20.43 E-value=3.3e+02 Score=25.86 Aligned_cols=65 Identities=25% Similarity=0.250 Sum_probs=44.8
Q ss_pred ECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCccc-CCCCeeeeeCcccHHHHHHHHHHcCCeEEE
Q psy13824 126 MDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHE-AQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 126 ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHE-Pe~G~FDFsG~~DLd~FI~lA~e~GL~VIL 203 (226)
.-|.|.++.+==+|+ +...++|++.|...|+ .+.| |+-+..=|+-.--=.+..+.|++.||.|+=
T Consensus 29 ~~g~pIyv~~eIVHN--------~~Vv~~L~~~g~~fve-----~l~e~p~~~~VIfsAHGVs~~v~~~a~~r~l~v~D 94 (294)
T COG0761 29 EYGAPIYVRHEIVHN--------RYVVDRLREKGAIFVE-----ELDEVPDGATVIFSAHGVSPAVREEAKERGLKVID 94 (294)
T ss_pred HcCCCeEEEeccccC--------HHHHHHHHHcCCEecc-----ccccCCCCCEEEEECCCCCHHHHHHHHHCCCEEEe
Confidence 347788888888999 8889999999977766 3444 233455665322225677788888888764
No 448
>PRK06267 hypothetical protein; Provisional
Probab=20.42 E-value=3.8e+02 Score=25.02 Aligned_cols=48 Identities=27% Similarity=0.345 Sum_probs=37.1
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCe
Q psy13824 143 SPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
-+.+.+.+.+++++++|+.+....+.- +-|..+ |+.+.++++++.+..
T Consensus 150 ~s~ed~~~~l~~ak~aGi~v~~g~IiG-lgEt~e---------d~~~~l~~l~~l~~d 197 (350)
T PRK06267 150 KPLDKIKEMLLKAKDLGLKTGITIILG-LGETED---------DIEKLLNLIEELDLD 197 (350)
T ss_pred CCHHHHHHHHHHHHHcCCeeeeeEEEe-CCCCHH---------HHHHHHHHHHHcCCC
Confidence 468899999999999999876555554 333322 788889999999976
No 449
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=20.41 E-value=1.5e+02 Score=24.19 Aligned_cols=53 Identities=25% Similarity=0.259 Sum_probs=31.1
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeee-----CcccHHHHHHHHHHcCCe
Q psy13824 143 SPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFD-----GHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 143 vP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFs-----G~~DLd~FI~lA~e~GL~ 200 (226)
..+...++.++.|+++|+..+.+|... .....+|+ |..|=...+..|++.|+.
T Consensus 35 ~~k~Lt~~e~~~i~~~Gl~i~pIyq~~-----~~~~~~~~~~~~~G~~dA~~A~~~A~~lG~p 92 (136)
T PF08924_consen 35 RQKNLTAGEVQDIRAAGLRIFPIYQGG-----GRETSDFTYGYAQGVADARDAVAAARALGFP 92 (136)
T ss_dssp ---B--HHHHHHHHHTT-EEEEEE-------------S-B--HHHHHHHHHHHHHHHHHTT--
T ss_pred ccCCCCHHHHHHHHHCCCEEEEEEecc-----cccccccccHHHHHHHHHHHHHHHHHHcCCC
Confidence 357788999999999999999998765 22223332 456778899999999986
No 450
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=20.38 E-value=1.3e+02 Score=27.34 Aligned_cols=34 Identities=29% Similarity=0.282 Sum_probs=28.4
Q ss_pred eccccCCCCC--HhHHHHHHHHHHHcCCCEEEEeee
Q psy13824 135 SGEFHYFRSP--QERWREILRKIRSAGLNAVSTYVG 168 (226)
Q Consensus 135 gGeiHYfRvP--~e~W~drL~kmKaaGlNTV~tyV~ 168 (226)
=.++|+|+-. .+.+.+++.+|.+.|...+-+-+.
T Consensus 120 I~SyH~F~~TP~~~~i~~~l~km~~~~aDivKiAvm 155 (231)
T COG0710 120 IVSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVM 155 (231)
T ss_pred EEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEEEec
Confidence 3589999754 589999999999999988888654
No 451
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=20.32 E-value=1.2e+02 Score=28.42 Aligned_cols=50 Identities=14% Similarity=0.319 Sum_probs=33.4
Q ss_pred HhHHHHHH-HHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcC
Q psy13824 145 QERWREIL-RKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEG 198 (226)
Q Consensus 145 ~e~W~drL-~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~G 198 (226)
++.|.+.. ..+.++|+..=.....| ..+.|.|||+ ..|-++|.+..+..|
T Consensus 216 R~~w~~~v~~~l~~agL~~P~~~~~~---~e~~~~~~~~-~~~w~~~~~~~~~~g 266 (289)
T TIGR02156 216 RQKFIDATVPQLESLGLTIPDPELKQ---NEERGHWVYG-EIDWDEFKQVIKGNG 266 (289)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcccc---ccccCCcCCC-CCCHHHHHHHHhcCC
Confidence 44455543 34888888653333334 3568999995 568899998887666
No 452
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=20.31 E-value=2.5e+02 Score=25.33 Aligned_cols=39 Identities=26% Similarity=0.582 Sum_probs=30.1
Q ss_pred EECCeeeEEeeccccCCC-CCHhHHHHHHHHHHHcCCCEE
Q psy13824 125 RMDGRPFRFVSGEFHYFR-SPQERWREILRKIRSAGLNAV 163 (226)
Q Consensus 125 ~ldGkpf~ilgGeiHYfR-vP~e~W~drL~kmKaaGlNTV 163 (226)
.++|++..++.|.+|+.. -++....--++.|++.|+.+|
T Consensus 69 ~l~g~~Vv~~~g~~H~yeG~~~~~~~a~i~~l~~lGv~~I 108 (272)
T PRK08202 69 RLGGKPVLAMQGRFHYYEGYSMEAVTFPVRVMKALGVETL 108 (272)
T ss_pred EECCEEEEEEccCCcccCCCCHHHHHHHHHHHHHcCCCEE
Confidence 589999999999999863 334444666789999999754
No 453
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=20.31 E-value=3.5e+02 Score=24.95 Aligned_cols=67 Identities=19% Similarity=0.290 Sum_probs=41.4
Q ss_pred CeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeecc
Q psy13824 128 GRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGF 207 (226)
Q Consensus 128 Gkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpGP 207 (226)
.++.+++.|.--. + ..++++..+.+++.|++... ..-.++.| +.+ ++++.++.+++.+.-+|+-.|=
T Consensus 23 ~~~~lvv~~~~~~-~--~~~~~~v~~~L~~~~~~~~~----~~~~~~~p---~~~---~v~~~~~~~~~~~~d~IiaiGG 89 (370)
T cd08551 23 GRKALIVTDPGLV-K--TGVLDKVIDSLKEAGIEVVI----FDGVEPNP---TLS---NVDAAVAAYREEGCDGVIAVGG 89 (370)
T ss_pred CCeEEEEeCcchh-h--CccHHHHHHHHHHcCCeEEE----ECCCCCCC---CHH---HHHHHHHHHHhcCCCEEEEeCC
Confidence 3566666654222 2 35666677777888886432 12234444 233 7888888898888888887664
No 454
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=20.31 E-value=3.4e+02 Score=25.02 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=37.2
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHH-cCCeEEEeecccc
Q psy13824 144 PQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAE-EGLYVLLYSGFSW 209 (226)
Q Consensus 144 P~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e-~GL~VILRpGPYI 209 (226)
+++.|.|-.++++++|++.++..+.= ..-.++.+..+-...+.++++..++ .++-|++...|+.
T Consensus 110 ~~~~~~~~a~~~~~~gad~iElN~s~--~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~ 174 (325)
T cd04739 110 SAGGWVDYARQIEEAGADALELNIYA--LPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFF 174 (325)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCC--CCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCc
Confidence 46889999999999999999987631 0112233322211123445554444 2556666666653
No 455
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=20.23 E-value=1.2e+02 Score=27.61 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCEEEEeee-cCcccCCCCeeeeeC-cccHHHHHHHHHHcCCeEEE
Q psy13824 149 REILRKIRSAGLNAVSTYVG-WSSHEAQPGTYSFDG-HRDVEYFMRLAAEEGLYVLL 203 (226)
Q Consensus 149 ~drL~kmKaaGlNTV~tyV~-WnlHEPe~G~FDFsG-~~DLd~FI~lA~e~GL~VIL 203 (226)
.+++++..++|++.|.+.++ -..|..+.=.-+.+. ...+...++.|+++|+.|..
T Consensus 82 ~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 82 LKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred HHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 56778899999999999886 444432211111110 12577899999999999863
No 456
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=20.21 E-value=3e+02 Score=22.81 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=11.2
Q ss_pred HHHHHHcCCeEEEe
Q psy13824 191 MRLAAEEGLYVLLY 204 (226)
Q Consensus 191 I~lA~e~GL~VILR 204 (226)
++.|++.|..+|+|
T Consensus 75 v~~~~~~~a~~ivr 88 (140)
T PRK13964 75 AEIAKKLGANFLIR 88 (140)
T ss_pred HHHHHHCCCeEEEE
Confidence 47788888888876
No 457
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=20.19 E-value=4.2e+02 Score=25.20 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=17.0
Q ss_pred HHHcCCeEEEeeccccccccC
Q psy13824 194 AAEEGLYVLLYSGFSWTMKSS 214 (226)
Q Consensus 194 A~e~GL~VILRpGPYIcaesT 214 (226)
..+.++.+++-||-|+.|.+.
T Consensus 289 ~~~~~~~l~~EpGR~lva~ag 309 (423)
T cd06842 289 LRDNGITLALEPGRALLDQCG 309 (423)
T ss_pred HHhcCCEEEEcCCHHHHhhcC
Confidence 345688999999999997654
No 458
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.18 E-value=3e+02 Score=24.28 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=42.2
Q ss_pred eeeEEeeccccCCCCCHh----HHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEe
Q psy13824 129 RPFRFVSGEFHYFRSPQE----RWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204 (226)
Q Consensus 129 kpf~ilgGeiHYfRvP~e----~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILR 204 (226)
-.+++++|++.-.+.|+. .+.+.++++++.+ .+.+++.+.-|..... . ...-.++.+.|++|+=.
T Consensus 40 ~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~--~i~v~~i~GNHD~~~~-~--------~~~~~l~~~~~v~i~~~ 108 (253)
T TIGR00619 40 IDALLVAGDVFDTANPPAEAQELFNAFFRNLSDAN--PIPIVVISGNHDSAQR-L--------SAAKKLLIELGVFVVGF 108 (253)
T ss_pred CCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcC--CceEEEEccCCCChhh-c--------ccchhHHHhCCeEEEEe
Confidence 346889999887666633 2457778888776 2556666777775432 1 12234556688887765
Q ss_pred ecc
Q psy13824 205 SGF 207 (226)
Q Consensus 205 pGP 207 (226)
|..
T Consensus 109 ~~~ 111 (253)
T TIGR00619 109 PVG 111 (253)
T ss_pred ccc
Confidence 543
No 459
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=20.10 E-value=1.1e+02 Score=28.92 Aligned_cols=49 Identities=20% Similarity=0.469 Sum_probs=33.5
Q ss_pred hHHHHHH-HHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcC
Q psy13824 146 ERWREIL-RKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEG 198 (226)
Q Consensus 146 e~W~drL-~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~G 198 (226)
+.|.+.. ..+.++|+..=...+-|| .+.|.||| |..|-++|.+..+.+|
T Consensus 235 ~~w~~~v~~~l~~~gL~vP~~~~~~~---e~~~~~~~-~~~~w~~~~~~~~~~g 284 (314)
T PRK13778 235 QKFVDATVPQAEVLGLTLPDPDLRWN---EERGHYDF-GEIDWDEFKEVIKGNG 284 (314)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCCcc---cccCCcCC-CCCCHHHHHHHHccCC
Confidence 3344433 347788886644444454 56799999 6778899999887766
No 460
>KOG2949|consensus
Probab=20.07 E-value=4.1e+02 Score=25.06 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=54.9
Q ss_pred CCeEEECCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCe
Q psy13824 121 ANTFRMDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLY 200 (226)
Q Consensus 121 ~~~F~ldGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~ 200 (226)
.+.+++.+-||- -|+....+--+...+-||+.|+|.|-+ || |.++.-.+++..-|.|+-
T Consensus 98 ~~~llv~DlPFg------tyeS~~sda~knAv~vmk~~g~~~vK~----------Eg-----Gs~~~~~~~~~l~ergip 156 (306)
T KOG2949|consen 98 KRPLLVGDLPFG------TYESSWSDAVKNAVRVMKEGGMDAVKL----------EG-----GSNSRITAAKRLVERGIP 156 (306)
T ss_pred CCceEEEecCcc------cccccHHHHHHHHHHHHHhcCCceEEE----------cc-----CcHHHHHHHHHHHHcCCc
Confidence 345566666652 233334555667788899999999988 22 224556688989999999
Q ss_pred EEEeeccccccccCCCCccc
Q psy13824 201 VLLYSGFSWTMKSSWDGTCI 220 (226)
Q Consensus 201 VILRpGPYIcaesT~~g~~P 220 (226)
|+--.|---.+.+.-+|+.|
T Consensus 157 V~gHvGLTPQ~v~~lGGyk~ 176 (306)
T KOG2949|consen 157 VMGHVGLTPQAVSVLGGYKP 176 (306)
T ss_pred eeeeccCChhhhhhccCcCc
Confidence 99888876666667777655
No 461
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=20.01 E-value=3.6e+02 Score=25.10 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=43.8
Q ss_pred CCeeeEEeeccccCCCCCHhHHHHHHHHHHHcCCCEEEEeeecCcccCCCCeeeeeCcccHHHHHHHHHHcCCeEEEeec
Q psy13824 127 DGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSG 206 (226)
Q Consensus 127 dGkpf~ilgGeiHYfRvP~e~W~drL~kmKaaGlNTV~tyV~WnlHEPe~G~FDFsG~~DLd~FI~lA~e~GL~VILRpG 206 (226)
.+++.+++.|.-=+ + ...+++....+++.|++... ++..+++|- .+ .+++.++.+++.+.-+|+-.|
T Consensus 22 ~~~r~livt~~~~~-~--~g~~~~v~~~L~~~gi~~~~----~~~v~~~p~---~~---~v~~~~~~~~~~~~D~IIaiG 88 (375)
T cd08194 22 GGKRPLIVTDKVMV-K--LGLVDKLTDSLKKEGIESAI----FDDVVSEPT---DE---SVEEGVKLAKEGGCDVIIALG 88 (375)
T ss_pred CCCeEEEEcCcchh-h--cchHHHHHHHHHHCCCeEEE----ECCCCCCcC---HH---HHHHHHHHHHhcCCCEEEEeC
Confidence 34556666553222 2 23667777788889987432 344455552 33 788899999999999888776
Q ss_pred c
Q psy13824 207 F 207 (226)
Q Consensus 207 P 207 (226)
=
T Consensus 89 G 89 (375)
T cd08194 89 G 89 (375)
T ss_pred C
Confidence 3
Done!