RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13824
(226 letters)
>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal
domain {Penicillium sp. [TaxId: 5081]}
Length = 354
Score = 110 bits (275), Expect = 2e-29
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 117 VNYSANTFRMDGRPFRFVSGEFHYFRSP-QERWREILRKIRSAGLNAVSTYVGWSSHEAQ 175
V + ++ ++G SGE H +R P + +I K+++ G N VS YV W+ E
Sbjct: 6 VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65
Query: 176 PGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSW 209
PG YS +G D++ F A E G+Y+L G
Sbjct: 66 PGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYI 99
>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus
thermophilus [TaxId: 274]}
Length = 393
Score = 52.0 bits (123), Expect = 1e-08
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 144 PQERWREILRKIRSAGLNAVSTYVG-WSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVL 202
P+ERW+E R++R AGL+ V W+ E +PG + ++ + A EGL V+
Sbjct: 12 PKERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWG---WLDEAIATLAAEGLKVV 68
Query: 203 LYSGFSW 209
L + +
Sbjct: 69 LGTPTAT 75
>d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon
esculentum) [TaxId: 4081]}
Length = 370
Score = 50.9 bits (120), Expect = 3e-08
Identities = 13/111 (11%), Positives = 39/111 (35%), Gaps = 10/111 (9%)
Query: 117 VNYSANTFRMDGRPFRFVSGEFHYF------RSPQERWREILRKIRSAGLNAVSTY---- 166
V F ++G+ ++ S + + ++ +N T+
Sbjct: 4 VYTDGTHFALNGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTWAFSH 63
Query: 167 VGWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSWDG 217
G ++ PG Y+ + +++ + A + G+++++ +W
Sbjct: 64 GGSRPLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLVNNWDAFGGKKQ 114
>d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId:
39650]}
Length = 410
Score = 40.5 bits (93), Expect = 9e-05
Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 18/111 (16%)
Query: 117 VNYSANTFRMDGRPFRFVSGEFHYFR--------SPQERWREILRKIRSAGLNAVSTYV- 167
V + F + G+P+ Y ++R + L +++ G+N +
Sbjct: 4 VRVNGGHFELQGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLKAIGVNNLRVLAV 63
Query: 168 ---------GWSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSW 209
+ G Y + ++Y + A+ + V+LY W
Sbjct: 64 SEKSEINSAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVLYFNNFW 114
>d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel
(Mytilus edulis) [TaxId: 6550]}
Length = 350
Score = 38.9 bits (89), Expect = 2e-04
Identities = 10/116 (8%), Positives = 26/116 (22%), Gaps = 18/116 (15%)
Query: 120 SANTFRMDGRPFRFVSGEFHYF-----------RSPQERWREILRKIRSAGLNAVSTYVG 168
S +G + + + L ++S G N+V ++
Sbjct: 5 SGTNLNYNGHHIFLSGANQAWVNYARDFGHNQYSKGKSTFESTLSDMQSHGGNSVRVWLH 64
Query: 169 WSSH-------EAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSWDG 217
D+ ++ A + + +S+
Sbjct: 65 IEGESTPEFDNNGYVTGIDNTLISDMRAYLHAAQRHNILIFFTLWNGAVKQSTHYR 120
>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus
[TaxId: 1396]}
Length = 417
Score = 38.3 bits (89), Expect = 5e-04
Identities = 10/76 (13%), Positives = 22/76 (28%), Gaps = 4/76 (5%)
Query: 146 ERWREILRKIRSAGLNAVSTYVGWSSHEAQ-PGTYSFDGHRDVEYFMRLAAEEGLYVLLY 204
E + LR + G A++ W E + F + + G+ ++
Sbjct: 29 ETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQRF---AQSVKNAGMKMIPI 85
Query: 205 SGFSWTMKSSWDGTCI 220
+ D +
Sbjct: 86 ISTHQCGGNVGDDCNV 101
>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 339
Score = 37.2 bits (85), Expect = 0.001
Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 19/107 (17%)
Query: 122 NTFRMDGRPFRFVSGEFH---YFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGT 178
+ ++G+P G + + R + + L+ + + GLN V +P
Sbjct: 12 RQYSVNGKPLLIRGGGYTPDLFLRWNETAAADKLKYVLNLGLNTVRLE-----GHIEP-- 64
Query: 179 YSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSWDGTCIGFLWT 225
+ F +A + G+ + + +G G W
Sbjct: 65 ---------DEFFDIADDLGVLTMPGWECCDKWEGQVNGEEKGEPWV 102
>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId:
51453]}
Length = 344
Score = 36.1 bits (82), Expect = 0.002
Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 17/108 (15%)
Query: 120 SANTFRMDGRPFRFVSGEFHYF--RSPQERWREILRKIRSAGLNAVSTYVG--------- 168
S F +DG+ F ++ + I S+GL V +
Sbjct: 8 SGTQFNIDGKVGYFAGTNCYWCSFLTNHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSP 67
Query: 169 ------WSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWT 210
S DG + ++Y ++ A + L +++ +W+
Sbjct: 68 GQIWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLIIPFVNNWS 115
>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum
[TaxId: 1515]}
Length = 340
Score = 35.3 bits (80), Expect = 0.004
Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 148 WREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFD--GHRDVEYFMRLAAEEGLYVLLYS 205
+ + I AG + V + E+ + G ++ + + L ++L
Sbjct: 30 TEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWCKKYNLGLVLDM 89
Query: 206 GFSWTMKSSWDGTC 219
+ + T
Sbjct: 90 HHAPGYRFQDFKTS 103
>d1b1ya_ c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare) [TaxId:
4513]}
Length = 500
Score = 35.2 bits (81), Expect = 0.004
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 146 ERWREI---LRKIRSAGLNAVSTYVGWSSHE-AQPGTYSFDGHRDVEYFMRLAAEEGL 199
E+ E+ LRK+ AG++ V V W E P Y + ++ + L + GL
Sbjct: 24 EKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQL---FELVQKAGL 78
>d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas)
[TaxId: 4120]}
Length = 498
Score = 34.8 bits (80), Expect = 0.006
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 146 ERWREI---LRKIRSAGLNAVSTYVGWSSHEAQ-PGTYSFDGHRDVEYFMRLAAEEGL 199
++ L+++++ G + V V W EA+ P Y + +R++ +L + GL
Sbjct: 31 PDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYREL---FQLVKKCGL 85
>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida
albicans) [TaxId: 5476]}
Length = 394
Score = 34.9 bits (79), Expect = 0.006
Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 148 WREILRKIRSAGLNAVSTYVGWSSHE-AQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSG 206
+ ++I + GLN V +G+ + + Y + +E + A + + V +
Sbjct: 70 TEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDLH 129
Query: 207 FSWTMKSSWD 216
+ ++ +D
Sbjct: 130 GAPGSQNGFD 139
>d1wdpa1 c.1.8.1 (A:6-495) beta-Amylase {Soybean (Glycine max)
[TaxId: 3847]}
Length = 490
Score = 34.4 bits (79), Expect = 0.008
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 146 ERWREI---LRKIRSAGLNAVSTYVGWSSHEAQ-PGTYSFDGHRDVEYFMRLAAEEGL 199
E + L ++R+AG++ V V W E + P Y + +R + ++L E GL
Sbjct: 25 EDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSL---LQLVQECGL 79
>d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 408
Score = 32.9 bits (74), Expect = 0.022
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 148 WREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDG--HRDVEYFMRLAAEEGLYVLL 203
+ I S G N V +G+ + + G ++ + A L V +
Sbjct: 75 QEQDFANIASQGFNLVRIPIGYWAFQILDDDPYVSGLQESYLDQAIGWARNNSLKVWV 132
>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 348
Score = 30.8 bits (68), Expect = 0.13
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 19/99 (19%)
Query: 123 TFRMDGRPFRFVSGEFHYF-----RSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPG 177
F ++G P + ER++ + R ++ A +N V + G
Sbjct: 17 YFEVNGIPMFAKGANYIPQDALLPNVTTERYQTLFRDMKEANMNMVRIWGG--------- 67
Query: 178 TYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSWD 216
G + F LA E G+ V F+ T S
Sbjct: 68 -----GTYENNLFYDLADENGILVWQDFMFACTPYPSDP 101
>d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum
[TaxId: 1521]}
Length = 380
Score = 30.3 bits (67), Expect = 0.16
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 149 REILRKIRSAGLNAVSTYVGWSSH-EAQPGTYSFDGHRDVEYFMRLAAEEGLYVLL 203
++++ I+ G N V V W H S V+ + + +YV+L
Sbjct: 64 KQMIDAIKQKGFNTVRIPVSWHPHVSGSDYKISDVWMNRVQEVVNYCIDNKMYVIL 119
>d1h1na_ c.1.8.3 (A:) Endocellulase EngI {Thermoascus aurantiacus
[TaxId: 5087]}
Length = 305
Score = 30.1 bits (67), Expect = 0.19
Identities = 8/82 (9%), Positives = 24/82 (29%), Gaps = 4/82 (4%)
Query: 149 REILRKIRSAGLNAVSTYVGWSSHE--AQPGTYSFDGHRDVEYFMRLAAEEGLYVLL--Y 204
+ + S G+N + G+ + D+ + ++G Y ++ +
Sbjct: 34 PNTIDTLISKGMNIFRVPFMMERLVPNSMTGSPDPNYLADLIATVNAITQKGAYAVVDPH 93
Query: 205 SGFSWTMKSSWDGTCIGFLWTK 226
+ + + W
Sbjct: 94 NYGRYYNSIISSPSDFETFWKT 115
>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga
maritima [TaxId: 2336]}
Length = 325
Score = 29.7 bits (65), Expect = 0.26
Identities = 6/80 (7%), Positives = 21/80 (26%), Gaps = 2/80 (2%)
Query: 148 WREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGH--RDVEYFMRLAAEEGLYVLLYS 205
E + N V + + + ++ + + G+++ +
Sbjct: 22 KEEDFLWMAQWDFNFVRIPMCHLLWSDRGNPFIIREDFFEKIDRVIFWGEKYGIHICISL 81
Query: 206 GFSWTMKSSWDGTCIGFLWT 225
+ + + LW
Sbjct: 82 HRAPGYSVNKEVEEKTNLWK 101
>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis
[TaxId: 1402]}
Length = 387
Score = 29.4 bits (65), Expect = 0.30
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 149 REILRKIRSAGLNAVSTYVGWSSHEAQPGTYSFDGH--RDVEYFMRLAAEEGLYVLLYSG 206
++I + ++ AG+N V + ++A Y + + A G+ +L
Sbjct: 41 QDIFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEKAIQIGKRATANGMKLLADFH 100
Query: 207 FS 208
+S
Sbjct: 101 YS 102
>d1wrua2 b.106.1.1 (A:3-176) Baseplate protein gpP {Bacteriophage mu
[TaxId: 10677]}
Length = 174
Score = 28.5 bits (63), Expect = 0.47
Identities = 20/137 (14%), Positives = 36/137 (26%), Gaps = 8/137 (5%)
Query: 68 FPVVMSSSKGRHGHLFKFIAILLVASVWICLRYGN--RIRRFHRPSSQTFTVNYSANTFR 125
F + ++ G + + G RR S TV T
Sbjct: 31 FELGVNVPPGTDLSGLAPGKKFTLEIGGQIVCTGYIDSRRRQMTADSMKITVAGRDKTAD 90
Query: 126 MDGRPFRFVSGEFHYFRSPQERWREILRKI-RSAGLNAVSTYVGWSSHEAQPGTYSFDGH 184
+ + G++ +I R + G+ S A PG
Sbjct: 91 LIDCAAVYSGGQWK-----NRTLEQIARDLCAPYGVTVRWELSDKESSAAFPGFTLDHSE 145
Query: 185 RDVEYFMRLAAEEGLYV 201
E +R + G+ +
Sbjct: 146 TVYEALVRASRARGVLM 162
>d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus
[TaxId: 28049]}
Length = 358
Score = 28.5 bits (62), Expect = 0.61
Identities = 13/113 (11%), Positives = 29/113 (25%), Gaps = 20/113 (17%)
Query: 127 DGRPFRFV--------SGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQ--- 175
+ P R + + +R +L +I+S G N + +
Sbjct: 17 NNVPVRIAGINWFGFETCNYVVHGLWSRDYRSMLDQIKSLGYNTIRLPYSDDILKPGTMP 76
Query: 176 ---------PGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSWDGTC 219
+ ++ + A + GL ++L S
Sbjct: 77 NSINFYQMNQDLQGLTSLQVMDKIVAYAGQIGLRIILDRHRPDCSGQSALWYT 129
>d1yq2a5 c.1.8.3 (A:313-609) beta-Galactosidase, domain 3
{Arthrobacter sp. c2-2 [TaxId: 192168]}
Length = 297
Score = 28.4 bits (62), Expect = 0.68
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 22/103 (21%)
Query: 122 NTFRMDGRPFRFVSGEFHYFRS------PQERWREILRKIRSAGLNAVSTYVGWSSHEAQ 175
+ F ++GR F H + RE L ++ +NA+ T
Sbjct: 6 DQFLVNGRRVVFHGVNRHETHPDRGRVFDEAGAREDLALMKRFNVNAIRTS--------- 56
Query: 176 PGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSWDGT 218
+ + LA E G +V+L +
Sbjct: 57 -------HYPPHPRLLDLADEMGFWVILECDLETHGFEAGGWV 92
>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma
cruzi [TaxId: 5693]}
Length = 412
Score = 28.7 bits (62), Expect = 0.71
Identities = 28/217 (12%), Positives = 58/217 (26%), Gaps = 20/217 (9%)
Query: 1 MKNLILCCSFVLYYENGEEELNCCCQPIRRKWVRLFENLTTNLGYFCWGKGTPQSHPNNM 60
K LI+ N + + + + G GK + +
Sbjct: 175 TKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVA 234
Query: 61 NRTSKWIFPVVMSSSKGRHGHLFKFIAILLVASVWICLRYGNRIRRFHRPSSQTFTVNYS 120
+ + ++ ++K ++ +L V + ++R TV +
Sbjct: 235 DFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQA 294
Query: 121 ANTFRMDGRPFRFVSGEFHYFRSPQERWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYS 180
A + P + + + G + + Y
Sbjct: 295 ALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECI-----------GLAPTMPRGAMYL 343
Query: 181 F---------DGHRDVEYFMRLAAEEGLYVLLYSGFS 208
D DVE+F +L EE + VL + F
Sbjct: 344 MSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH 380
>d1i1wa_ c.1.8.3 (A:) Xylanase A, catalytic core {Thermoascus
aurantiacus [TaxId: 5087]}
Length = 303
Score = 27.8 bits (61), Expect = 1.1
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 169 WSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSW 215
W + E G ++F G +Y + A + G + ++ + SW
Sbjct: 51 WDATEPSQGNFNFAG---ADYLVNWAQQNGKLIRGHTLVWHSQLPSW 94
>d1xyza_ c.1.8.3 (A:) Xylanase {Clostridium thermocellum, XynZ
[TaxId: 1515]}
Length = 320
Score = 27.1 bits (59), Expect = 1.6
Identities = 5/47 (10%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 169 WSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSW 215
+ + + + + F + + A G+ + ++ SW
Sbjct: 49 FDALQPRQNVFDFS---KGDQLLAFAERNGMQMRGHTLIWHNQNPSW 92
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium
lapideum [TaxId: 32060]}
Length = 388
Score = 27.1 bits (59), Expect = 1.7
Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 147 RWREILRKIRSAGLNAVSTYVGWSSHEAQPGTYSF-----DGHRDVEYFMRLAAEEGLYV 201
+ R L+A++ G + Y F G +++ L + +
Sbjct: 291 EMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVAT 350
Query: 202 LLYSGF 207
+ + F
Sbjct: 351 VPGAAF 356
>d1n82a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Ixt6
[TaxId: 1422]}
Length = 330
Score = 26.3 bits (57), Expect = 3.1
Identities = 5/47 (10%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 169 WSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSW 215
+ + + G ++F + + A + V ++ W
Sbjct: 48 FEHLQPEEGKFTFQE---ADRIVDFACSHRMAVRGHTLVWHNQTPDW 91
>d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus
[TaxId: 155077]}
Length = 364
Score = 26.0 bits (56), Expect = 4.5
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 169 WSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSWD 216
S + G ++F + F+ A E + V ++ + +
Sbjct: 58 MSYMQPTEGNFNFTN---ADAFVDWATENNMTVHGHALVWHSDYQVPN 102
>d1nq6a_ c.1.8.3 (A:) Xylanase A, catalytic core {Streptomyces
halstedii [TaxId: 1944]}
Length = 302
Score = 25.9 bits (56), Expect = 4.5
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 169 WSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSW 215
W + E+ ++SF + + A +G+ V ++ + W
Sbjct: 48 WDAVESSRNSFSFS---AADRIVSHAQSKGMKVRGHTLVWHSQLPGW 91
>d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 452
Score = 25.9 bits (56), Expect = 5.1
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 153 RKIRSAGLNAVSTYVGWSSHEAQPG-TYSFDGHRDVEYFMRLAAEEGLYVLLYSG 206
LN W Y +++L + + +LLY+G
Sbjct: 315 NPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNG 369
>d1ta3b_ c.1.8.3 (B:) Xylanase A, catalytic core {Emericella
nidulans (Aspergillus nidulans) [TaxId: 162425]}
Length = 301
Score = 25.5 bits (55), Expect = 6.6
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 169 WSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSW 215
W + E G + + G +Y + A + V ++ + SW
Sbjct: 48 WDALEPSQGNFGWSG---ADYLVDYATQHNKKVRGHTLVWHSQLPSW 91
>d1v0la_ c.1.8.3 (A:) Xylanase A, catalytic core {Streptomyces
lividans [TaxId: 1916]}
Length = 302
Score = 25.1 bits (54), Expect = 6.8
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 169 WSSHEAQPGTYSFDGHRDVEYFMRLAAEEGLYVLLYSGFSWTMKSSWD 216
+ E Q G ++F + A + G V ++ + + W
Sbjct: 48 IDATEPQRGQFNFS---SADRVYNWAVQNGKQVRGHTLAWHSQQPGWM 92
>d3cdda2 b.106.1.1 (A:2-180) Baseplate protein gpP {Shewanella
oneidensis [TaxId: 70863]}
Length = 179
Score = 25.1 bits (54), Expect = 7.3
Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 11/104 (10%)
Query: 100 YGNRIRRFHRPSSQTFTVNYSANTFRMDGRPFRFVSGEFHYFRSPQERWREILRKI-RSA 158
Y + + S+ T +V+ T + + SG+F+ + +I + +
Sbjct: 73 YVDDWVPSYDESTITISVSGRDKTADLVDCSIDYPSGQFN-----NQTLTQIADIVCKPF 127
Query: 159 GLNAVSTYVGWSSHEAQPGTYSF-DGHRDVEYFMRLAAEEGLYV 201
G+ + + G E RLA + G+ +
Sbjct: 128 GIKVIV----NTDVGEPFQRIQIEQGETPHELLARLAKQRGVLL 167
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.139 0.473
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 962,676
Number of extensions: 44901
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 51
Length of query: 226
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,281,736
Effective search space: 184569984
Effective search space used: 184569984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.0 bits)