BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13826
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 155 bits (392), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 70/77 (90%), Positives = 74/77 (96%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct: 22 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 81
Query: 153 RSYYRGAAGALMVIDVS 169
RSYYRGAAGALMV D++
Sbjct: 82 RSYYRGAAGALMVYDIT 98
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/19 (89%), Positives = 19/19 (100%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GDMGVGKSCLLHQFTE+K+
Sbjct: 22 GDMGVGKSCLLHQFTEKKF 40
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 152 bits (384), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 69/77 (89%), Positives = 73/77 (94%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQ RFRAVT
Sbjct: 37 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVT 96
Query: 153 RSYYRGAAGALMVIDVS 169
RSYYRGAAGALMV D++
Sbjct: 97 RSYYRGAAGALMVYDIT 113
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/19 (89%), Positives = 19/19 (100%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GDMGVGKSCLLHQFTE+K+
Sbjct: 37 GDMGVGKSCLLHQFTEKKF 55
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 66/77 (85%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ G GKSCLLHQF E+KF D HTIGVEFG++II V G+ +KLQIWDTAGQERFR+VT
Sbjct: 18 GNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVT 77
Query: 153 RSYYRGAAGALMVIDVS 169
RSYYRGAAGAL+V D++
Sbjct: 78 RSYYRGAAGALLVYDIT 94
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
G+ G GKSCLLHQF E+K+
Sbjct: 18 GNAGTGKSCLLHQFIEKKF 36
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 126 bits (316), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 66/77 (85%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ G GKSCLLHQF E+KF D HTIGVEFG++II V G+ +KLQIWDTAGQERFR+VT
Sbjct: 17 GNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVT 76
Query: 153 RSYYRGAAGALMVIDVS 169
RSYYRGAAGAL+V D++
Sbjct: 77 RSYYRGAAGALLVYDIT 93
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
G+ G GKSCLLHQF E+K+
Sbjct: 17 GNAGTGKSCLLHQFIEKKF 35
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 64/77 (83%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G G GKSCLLHQF E KF D HTIGVEFG+R++ V G+ +KLQIWDTAGQERFR+VT
Sbjct: 32 GSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVT 91
Query: 153 RSYYRGAAGALMVIDVS 169
RSYYRGAAGAL+V D++
Sbjct: 92 RSYYRGAAGALLVYDIT 108
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
G G GKSCLLHQF E K+
Sbjct: 32 GSAGTGKSCLLHQFIENKF 50
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 124 bits (310), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 65/77 (84%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ G GKSCLLHQF E+KF D HTIGVEFG++II V G+ +KLQIWDTAG ERFR+VT
Sbjct: 15 GNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVT 74
Query: 153 RSYYRGAAGALMVIDVS 169
RSYYRGAAGAL+V D++
Sbjct: 75 RSYYRGAAGALLVYDIT 91
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
G+ G GKSCLLHQF E+K+
Sbjct: 15 GNAGTGKSCLLHQFIEKKF 33
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 65/77 (84%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKSCLL QFT+++F P TIGVEFG R+I + G++IKLQIWDTAGQE FR++T
Sbjct: 17 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSIT 76
Query: 153 RSYYRGAAGALMVIDVS 169
RSYYRGAAGAL+V D++
Sbjct: 77 RSYYRGAAGALLVYDIT 93
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGKSCLL QFT++++
Sbjct: 17 GDTGVGKSCLLLQFTDKRF 35
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 65/77 (84%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKSCLL QFT+++F P TIGVEFG R++ + G++IKLQIWDTAGQE FR++T
Sbjct: 28 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSIT 87
Query: 153 RSYYRGAAGALMVIDVS 169
RSYYRGAAGAL+V D++
Sbjct: 88 RSYYRGAAGALLVYDIT 104
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGKSCLL QFT++++
Sbjct: 28 GDTGVGKSCLLLQFTDKRF 46
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKS LL +FT+ +F D TIGVEF TR +E+ G++IK QIWDTAGQER+RA+T
Sbjct: 20 GDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT 79
Query: 153 RSYYRGAAGALMVIDVS 169
+YYRGA GAL+V D+S
Sbjct: 80 SAYYRGAVGALIVYDIS 96
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 22 GDMGVGKSCLLHQFTEQKYFLGLQLT 47
GD GVGKS LL +FT+ ++ + + T
Sbjct: 20 GDSGVGKSNLLSRFTKNEFNMDSKST 45
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 106 bits (265), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKSCLL +F E KF P TIG++F + ++++G+K+KLQIWDTAGQERFR +T
Sbjct: 10 GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT 69
Query: 153 RSYYRGAAGALMVIDVSH 170
+YYRGA G ++V D++
Sbjct: 70 TAYYRGAXGIILVYDITD 87
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGKSCLL +F E K+
Sbjct: 10 GDSGVGKSCLLVRFVEDKF 28
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 106 bits (264), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKSCLL +F E KF P TIG++F + ++++G+K+KLQIWDTAGQERFR +T
Sbjct: 10 GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT 69
Query: 153 RSYYRGAAGALMVIDVSH 170
+YYRGA G ++V D++
Sbjct: 70 TAYYRGAMGIILVYDITD 87
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGKSCLL +F E K+
Sbjct: 10 GDSGVGKSCLLVRFVEDKF 28
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 106 bits (264), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 58/77 (75%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKS LL +FT +F + TIGVEF TR IEV +KIK QIWDTAG ER+RA+T
Sbjct: 17 GDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAIT 76
Query: 153 RSYYRGAAGALMVIDVS 169
+YYRGA GAL+V D+S
Sbjct: 77 SAYYRGAVGALIVYDIS 93
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 106 bits (264), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKSCLL +F E KF P TIG++F + ++++G+K+KLQ+WDTAGQERFR +T
Sbjct: 10 GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT 69
Query: 153 RSYYRGAAGALMVIDVSH 170
+YYRGA G ++V DV+
Sbjct: 70 TAYYRGAXGIILVYDVTD 87
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGKSCLL +F E K+
Sbjct: 10 GDSGVGKSCLLVRFVEDKF 28
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 59/77 (76%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKS LL +FT +F + TIGVEF TR I+V G+ IK QIWDTAGQER+RA+T
Sbjct: 27 GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAIT 86
Query: 153 RSYYRGAAGALMVIDVS 169
+YYRGA GAL+V D++
Sbjct: 87 SAYYRGAVGALLVYDIA 103
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 22 GDMGVGKSCLLHQFTEQKYFL 42
GD GVGKS LL +FT ++ L
Sbjct: 27 GDSGVGKSNLLSRFTRNEFNL 47
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKSCLL +F E KF P TIG++F + ++++G+K+KLQ+WDTAGQERFR +T
Sbjct: 27 GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT 86
Query: 153 RSYYRGAAGALMVIDVSH 170
+YYRGA G ++V DV+
Sbjct: 87 TAYYRGAMGIILVYDVTD 104
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGKSCLL +F E K+
Sbjct: 27 GDSGVGKSCLLVRFVEDKF 45
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKSCLL +F E KF P TIG++F + ++++G+K+KLQ+WDTAGQERFR +T
Sbjct: 14 GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT 73
Query: 153 RSYYRGAAGALMVIDVSH 170
+YYRGA G ++V DV+
Sbjct: 74 TAYYRGAMGIILVYDVTD 91
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGKSCLL +F E K+
Sbjct: 14 GDSGVGKSCLLVRFVEDKF 32
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 59/77 (76%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKS LL +FT +F + TIGVEF TR I+V G+ IK QIWDTAGQER+RA+T
Sbjct: 36 GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAIT 95
Query: 153 RSYYRGAAGALMVIDVS 169
+YYRGA GAL+V D++
Sbjct: 96 SAYYRGAVGALLVYDIA 112
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 22 GDMGVGKSCLLHQFTEQKYFL 42
GD GVGKS LL +FT ++ L
Sbjct: 36 GDSGVGKSNLLSRFTRNEFNL 56
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKS LL +FT +F + TIGVEF TR I+V G+ IK QIWDTAGQER+R +T
Sbjct: 12 GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRIT 71
Query: 153 RSYYRGAAGALMVIDVS 169
+YYRGA GAL+V D++
Sbjct: 72 SAYYRGAVGALLVYDIA 88
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 22 GDMGVGKSCLLHQFTEQKYFL 42
GD GVGKS LL +FT ++ L
Sbjct: 12 GDSGVGKSNLLSRFTRNEFNL 32
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 103 bits (256), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKS LL +FT +F + TIGVEF TR I+V G+ IK QIWDTAG ER+RA+T
Sbjct: 12 GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT 71
Query: 153 RSYYRGAAGALMVIDVS 169
+YYRGA GAL+V D++
Sbjct: 72 SAYYRGAVGALLVYDIA 88
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 22 GDMGVGKSCLLHQFTEQKYFL 42
GD GVGKS LL +FT ++ L
Sbjct: 12 GDSGVGKSNLLSRFTRNEFNL 32
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 103 bits (256), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKS LL +FT +F + TIGVEF TR I+V G+ IK QIWDTAG ER+RA+T
Sbjct: 15 GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT 74
Query: 153 RSYYRGAAGALMVIDVS 169
+YYRGA GAL+V D++
Sbjct: 75 SAYYRGAVGALLVYDIA 91
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 22 GDMGVGKSCLLHQFTEQKYFL 42
GD GVGKS LL +FT ++ L
Sbjct: 15 GDSGVGKSNLLSRFTRNEFNL 35
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 103 bits (256), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKS LL +FT +F + TIGVEF TR I+V G+ IK QIWDTAG ER+RA+T
Sbjct: 18 GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT 77
Query: 153 RSYYRGAAGALMVIDVS 169
+YYRGA GAL+V D++
Sbjct: 78 SAYYRGAVGALLVYDIA 94
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 22 GDMGVGKSCLLHQFTEQKYFL 42
GD GVGKS LL +FT ++ L
Sbjct: 18 GDSGVGKSNLLSRFTRNEFNL 38
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 60/80 (75%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGK+C+L +F+E F TIG++F R IE+ G++IKLQIWDTAGQERFR +T
Sbjct: 15 GDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 74
Query: 153 RSYYRGAAGALMVIDVSHVK 172
+YYRGA G ++V D+++ K
Sbjct: 75 TAYYRGAMGIMLVYDITNEK 94
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGK+C+L +F+E +
Sbjct: 15 GDSGVGKTCVLFRFSEDAF 33
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKS LL +FT +F + TIGVEF TR I+V G+ IK QIWDTAG ER+RA+T
Sbjct: 36 GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT 95
Query: 153 RSYYRGAAGALMVIDVS 169
+YYRGA GAL+V D++
Sbjct: 96 SAYYRGAVGALLVYDIA 112
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 22 GDMGVGKSCLLHQFTEQKYFL 42
GD GVGKS LL +FT ++ L
Sbjct: 36 GDSGVGKSNLLSRFTRNEFNL 56
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 60/80 (75%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGK+C+L +F+E F TIG++F R IE+ G++IKLQIWDTAGQERFR +T
Sbjct: 13 GDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 72
Query: 153 RSYYRGAAGALMVIDVSHVK 172
+YYRGA G ++V D+++ K
Sbjct: 73 TAYYRGAMGIMLVYDITNEK 92
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGK+C+L +F+E +
Sbjct: 13 GDSGVGKTCVLFRFSEDAF 31
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 58/78 (74%), Gaps = 1/78 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI-KLQIWDTAGQERFRAV 151
GD GVGKS LL +FT +F + TIGVEF T+ I++ KI K QIWDTAGQER+RA+
Sbjct: 14 GDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAI 73
Query: 152 TRSYYRGAAGALMVIDVS 169
T +YYRGA GAL+V D++
Sbjct: 74 TSAYYRGAVGALLVYDIT 91
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 22 GDMGVGKSCLLHQFTEQKYFL 42
GD GVGKS LL +FT ++ L
Sbjct: 14 GDSGVGKSNLLSRFTRDEFNL 34
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 6 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 65
Query: 153 RSYYRGAAGALMVIDVSH 170
SYYRGA G ++V DV+
Sbjct: 66 SSYYRGAHGIIVVYDVTD 83
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGKSCLL +F + Y
Sbjct: 6 GDSGVGKSCLLLRFADDTY 24
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 13 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 72
Query: 153 RSYYRGAAGALMVIDVSH 170
SYYRGA G ++V DV+
Sbjct: 73 SSYYRGAHGIIVVYDVTD 90
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGKSCLL +F + Y
Sbjct: 13 GDSGVGKSCLLLRFADDTY 31
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 56/77 (72%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 13 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 72
Query: 153 RSYYRGAAGALMVIDVS 169
SYYRGA G ++V DV+
Sbjct: 73 SSYYRGAHGIIVVYDVT 89
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGKSCLL +F + Y
Sbjct: 13 GDSGVGKSCLLLRFADDTY 31
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 56/77 (72%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 16 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 75
Query: 153 RSYYRGAAGALMVIDVS 169
SYYRGA G ++V DV+
Sbjct: 76 SSYYRGAHGIIVVYDVT 92
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGKSCLL +F + Y
Sbjct: 16 GDSGVGKSCLLLRFADDTY 34
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 56/77 (72%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 16 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 75
Query: 153 RSYYRGAAGALMVIDVS 169
SYYRGA G ++V DV+
Sbjct: 76 SSYYRGAHGIIVVYDVT 92
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGKSCLL +F + Y
Sbjct: 16 GDSGVGKSCLLLRFADDTY 34
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 99.8 bits (247), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 56/77 (72%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 5 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 64
Query: 153 RSYYRGAAGALMVIDVS 169
SYYRGA G ++V DV+
Sbjct: 65 SSYYRGAHGIIVVYDVT 81
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGKSCLL +F + Y
Sbjct: 5 GDSGVGKSCLLLRFADDTY 23
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 23 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 82
Query: 153 RSYYRGAAGALMVIDVSH 170
SYYRGA G ++V DV+
Sbjct: 83 SSYYRGAHGIIVVYDVTD 100
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGKSCLL +F + Y
Sbjct: 23 GDSGVGKSCLLLRFADDTY 41
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 15 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 74
Query: 153 RSYYRGAAGALMVIDVSH 170
SYYRGA G ++V DV+
Sbjct: 75 SSYYRGAHGIIVVYDVTD 92
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGKSCLL +F + Y
Sbjct: 15 GDSGVGKSCLLLRFADDTY 33
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 56/77 (72%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 40 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 99
Query: 153 RSYYRGAAGALMVIDVS 169
SYYRGA G ++V DV+
Sbjct: 100 SSYYRGAHGIIVVYDVT 116
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGKSCLL +F + Y
Sbjct: 40 GDSGVGKSCLLLRFADDTY 58
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 99.4 bits (246), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 32 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 91
Query: 153 RSYYRGAAGALMVIDVSH 170
SYYRGA G ++V DV+
Sbjct: 92 SSYYRGAHGIIVVYDVTD 109
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGKSCLL +F + Y
Sbjct: 32 GDSGVGKSCLLLRFADDTY 50
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 56/77 (72%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGK+CLL +F + + TIGV+F R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 23 GDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 82
Query: 153 RSYYRGAAGALMVIDVS 169
SYYRGA G ++V DV+
Sbjct: 83 SSYYRGAHGIIVVYDVT 99
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGK+CLL +F + Y
Sbjct: 23 GDSGVGKNCLLLRFADDTY 41
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 58/78 (74%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ GVGKSCLL +F++ + D TIGV+F + +E+ G+ +KLQIWDTAGQERFR +T
Sbjct: 15 GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT 74
Query: 153 RSYYRGAAGALMVIDVSH 170
SYYRG+ G ++V DV+
Sbjct: 75 SSYYRGSHGIIIVYDVTD 92
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 6/30 (20%)
Query: 22 GDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51
G+ GVGKSCLL +F++ Y T DY+
Sbjct: 15 GNSGVGKSCLLLRFSDDTY------TNDYI 38
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 58/78 (74%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ GVGKSCLL +F++ + D TIGV+F + +E+ G+ +KLQIWDTAGQERFR +T
Sbjct: 15 GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT 74
Query: 153 RSYYRGAAGALMVIDVSH 170
SYYRG+ G ++V DV+
Sbjct: 75 SSYYRGSHGIIIVYDVTD 92
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 6/30 (20%)
Query: 22 GDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51
G+ GVGKSCLL +F++ Y T DY+
Sbjct: 15 GNSGVGKSCLLLRFSDDTY------TNDYI 38
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 56/77 (72%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKS LL +F + F TIGV+F R +E++GEK+KLQIWDTAGQERFR +T
Sbjct: 16 GDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTIT 75
Query: 153 RSYYRGAAGALMVIDVS 169
+YYRG G ++V DV+
Sbjct: 76 STYYRGTHGVIVVYDVT 92
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 58/78 (74%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ GVGKSCLL +F++ + D TIGV+F + +E+ G+ +KLQIWDTAGQERFR +T
Sbjct: 28 GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT 87
Query: 153 RSYYRGAAGALMVIDVSH 170
SYYRG+ G ++V DV+
Sbjct: 88 SSYYRGSHGIIIVYDVTD 105
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 6/31 (19%)
Query: 22 GDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52
G+ GVGKSCLL +F++ Y T DY+
Sbjct: 28 GNSGVGKSCLLLRFSDDTY------TNDYIS 52
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 59/77 (76%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ GVGK+CL+ +FT+ F P TIGV+F + +E++GEK+KLQIWDTAGQERFR++T
Sbjct: 33 GNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSIT 92
Query: 153 RSYYRGAAGALMVIDVS 169
+SYYR A ++ D++
Sbjct: 93 QSYYRSANALILTYDIT 109
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 22 GDMGVGKSCLLHQFTE 37
G+ GVGK+CL+ +FT+
Sbjct: 33 GNAGVGKTCLVRRFTQ 48
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 55/78 (70%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ GVGKS LL +FT+ F P+ TIGV+F + I V G K KL IWDTAGQERFR +T
Sbjct: 22 GESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT 81
Query: 153 RSYYRGAAGALMVIDVSH 170
SYYRGA G ++V DV+
Sbjct: 82 PSYYRGAQGVILVYDVTR 99
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 54/77 (70%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKSCLL +F + + TIGV+F R I + + +KLQIWDTAGQERFR +T
Sbjct: 16 GDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTIT 75
Query: 153 RSYYRGAAGALMVIDVS 169
SYYRGA G ++V DV+
Sbjct: 76 SSYYRGAHGIIIVYDVT 92
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGKSCLL +F + Y
Sbjct: 16 GDSGVGKSCLLLRFADDTY 34
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 93.2 bits (230), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 55/77 (71%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ GVGK+ LL +FT +F D TIGVEF TR + + +K QIWDTAG ER+RA+T
Sbjct: 17 GESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT 76
Query: 153 RSYYRGAAGALMVIDVS 169
+YYRGA GAL+V D++
Sbjct: 77 SAYYRGAVGALLVFDLT 93
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 55/77 (71%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ GVGK+ LL +FT +F D TIGVEF TR + + +K QIWDTAG ER+RA+T
Sbjct: 32 GESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT 91
Query: 153 RSYYRGAAGALMVIDVS 169
+YYRGA GAL+V D++
Sbjct: 92 SAYYRGAVGALLVFDLT 108
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 56/78 (71%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G GVGK+ L+ +FT+ F C T+GV+F + +E+ G+KI+LQIWDTAGQERF ++T
Sbjct: 33 GSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT 92
Query: 153 RSYYRGAAGALMVIDVSH 170
+YYR A G ++V D++
Sbjct: 93 SAYYRSAKGIILVYDITK 110
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 55/77 (71%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD VGK+C++ +F F TIGV+F + +E+ G+++KLQIWDTAGQERFR +T
Sbjct: 36 GDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTIT 95
Query: 153 RSYYRGAAGALMVIDVS 169
+SYYR A GA++ D++
Sbjct: 96 QSYYRSANGAILAYDIT 112
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDC-PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 151
GD GVGK+CLL +F + F+ T+G++F ++++V G K+KLQ+WDTAGQERFR+V
Sbjct: 17 GDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV 76
Query: 152 TRSYYRGAAGALMVIDVSH 170
T +YYR A L++ DV++
Sbjct: 77 THAYYRDAHALLLLYDVTN 95
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 22 GDMGVGKSCLLHQFTEQKYFLG 43
GD GVGK+CLL +F + + G
Sbjct: 17 GDSGVGKTCLLVRFKDGAFLAG 38
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 54/78 (69%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGK+ L ++ + F P T+G++F + + H ++IKLQIWDTAGQER+R +T
Sbjct: 29 GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTIT 88
Query: 153 RSYYRGAAGALMVIDVSH 170
+YYRGA G L++ D+++
Sbjct: 89 TAYYRGAMGFLLMYDIAN 106
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKS ++ +F E F P+ TIG F T+ ++ E K IWDTAGQERFRA+
Sbjct: 12 GDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALA 71
Query: 153 RSYYRGAAGALMVIDVS 169
YYRG+A A++V D++
Sbjct: 72 PMYYRGSAAAIIVYDIT 88
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 54/78 (69%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGK+ L ++ + F P T+G++F + + H +++KLQIWDTAGQER+R +T
Sbjct: 30 GNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTIT 89
Query: 153 RSYYRGAAGALMVIDVSH 170
+YYRGA G +++ D+++
Sbjct: 90 TAYYRGAMGFILMYDITN 107
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 54/78 (69%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGK+ L ++ + F P T+G++F + I + ++IKLQIWDTAGQER+R +T
Sbjct: 12 GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTIT 71
Query: 153 RSYYRGAAGALMVIDVSH 170
+YYRGA G +++ D+++
Sbjct: 72 TAYYRGAMGFILMYDITN 89
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 50/77 (64%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKS ++ +F E F P+ TIG F T+ ++ E K IWDTAG ERFRA+
Sbjct: 13 GDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALA 72
Query: 153 RSYYRGAAGALMVIDVS 169
YYRG+A A++V D++
Sbjct: 73 PMYYRGSAAAIIVYDIT 89
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 50/77 (64%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKS L++++ KF HTIGVEF R +EV G + LQIWDTAGQERF+++
Sbjct: 14 GDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLR 73
Query: 153 RSYYRGAAGALMVIDVS 169
+YRGA L+ V
Sbjct: 74 TPFYRGADCCLLTFSVD 90
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 52/77 (67%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD VGKS L + + +F + T+GV+F + + V GE+ LQ+WDTAGQERFR++
Sbjct: 35 GDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIA 94
Query: 153 RSYYRGAAGALMVIDVS 169
+SY+R A G L++ DV+
Sbjct: 95 KSYFRKADGVLLLYDVT 111
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKS L++++ KF HTIGVEF + +EV G + +QIWDTAGQERFR++
Sbjct: 18 GDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR 77
Query: 153 RSYYRGAAGALMVIDV 168
+YRG+ L+ V
Sbjct: 78 TPFYRGSDCCLLTFSV 93
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKS L++++ KF HTIGVEF + +EV G + +QIWDTAGQERFR++
Sbjct: 14 GDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR 73
Query: 153 RSYYRGAAGALMVIDV 168
+YRG+ L+ V
Sbjct: 74 TPFYRGSDCCLLTFSV 89
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKS L++++ KF HTIGVEF + +EV G + +QIWDTAGQERFR++
Sbjct: 16 GDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR 75
Query: 153 RSYYRGAAGALMVIDV 168
+YRG+ L+ V
Sbjct: 76 TPFYRGSDCCLLTFSV 91
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 52/78 (66%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGK+ L ++ + F P T+G++F + I + ++IKLQIWDTAG ER+R +T
Sbjct: 15 GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTIT 74
Query: 153 RSYYRGAAGALMVIDVSH 170
+YYRGA G ++ D+++
Sbjct: 75 TAYYRGAXGFILXYDITN 92
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 53/78 (67%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD+G GKS L+ +F + +F+ TIG F ++ + V+ +K +IWDTAGQER+ ++
Sbjct: 19 GDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA 78
Query: 153 RSYYRGAAGALMVIDVSH 170
YYRGAA A++V DV++
Sbjct: 79 PMYYRGAAAAIIVFDVTN 96
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AV 151
GD VGK+CL ++F +F TIGV+F R +++ GE+IK+Q+WDTAGQERFR ++
Sbjct: 27 GDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSM 86
Query: 152 TRSYYRGAAGALMVIDVSHV 171
+ YYR + V D++++
Sbjct: 87 VQHYYRNVHAVVFVYDMTNM 106
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AV 151
GD VGK+CL ++F +F TIGV+F R +++ GE+IK+Q+WDTAGQERFR ++
Sbjct: 36 GDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSM 95
Query: 152 TRSYYRGAAGALMVIDVSH 170
+ YYR + V D ++
Sbjct: 96 VQHYYRNVHAVVFVYDXTN 114
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK-LQIWDTAGQERFRAV 151
GD GVGK+ L+H++ K+ TIG +F T+ + V G+K+ +Q+WDTAGQERF+++
Sbjct: 15 GDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL 74
Query: 152 TRSYYRGAAGALMVIDVSH 170
++YRGA ++V DV++
Sbjct: 75 GVAFYRGADCCVLVYDVTN 93
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGK+ L+H++ KY
Sbjct: 15 GDSGVGKTSLMHRYVNDKY 33
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 50/73 (68%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGKS ++ ++ + F D TIGV+F R I+V+ E ++L +WDTAGQE F A+T
Sbjct: 12 GNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT 71
Query: 153 RSYYRGAAGALMV 165
++YYRGA ++V
Sbjct: 72 KAYYRGAQACVLV 84
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 52/77 (67%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGK+ L++Q+ +KF TIG +F T+ + V + +QIWDTAGQERF+++
Sbjct: 15 GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG 74
Query: 153 RSYYRGAAGALMVIDVS 169
++YRGA ++V DV+
Sbjct: 75 VAFYRGADCCVLVFDVT 91
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGK+ L++Q+ +K+
Sbjct: 15 GDSGVGKTSLMNQYVNKKF 33
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 52/77 (67%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGK+ L++Q+ +KF TIG +F T+ + V + +QIWDTAGQERF+++
Sbjct: 15 GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG 74
Query: 153 RSYYRGAAGALMVIDVS 169
++YRGA ++V DV+
Sbjct: 75 VAFYRGADCCVLVFDVT 91
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGK+ L++Q+ +K+
Sbjct: 15 GDSGVGKTSLMNQYVNKKF 33
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 52/77 (67%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGK+ L++Q+ +KF TIG +F T+ + V + +QIWDTAGQERF+++
Sbjct: 15 GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG 74
Query: 153 RSYYRGAAGALMVIDVS 169
++YRGA ++V DV+
Sbjct: 75 VAFYRGADCCVLVFDVT 91
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGK+ L++Q+ +K+
Sbjct: 15 GDSGVGKTSLMNQYVNKKF 33
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 56/87 (64%), Gaps = 10/87 (11%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE----------KIKLQIWDT 142
GD GVGK+ L+++T+ KF P T+G++F + + + + K+ LQ+WDT
Sbjct: 32 GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDT 91
Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVS 169
AGQERFR++T +++R A G L++ D++
Sbjct: 92 AGQERFRSLTTAFFRDAMGFLLMFDLT 118
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGK+ L+++T+ K+
Sbjct: 32 GDSGVGKTTFLYRYTDNKF 50
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGK+ L+ +F F TIG++F ++ + + I+LQ+WDTAGQERFR++
Sbjct: 13 GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLI 72
Query: 153 RSYYRGAAGALMVIDVSHVK 172
SY R +A A++V D+++V
Sbjct: 73 PSYIRDSAAAVVVYDITNVN 92
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGK+ L++Q+ +KF TIG +F T+ + V + +QIWDTAG ERF+++
Sbjct: 15 GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLG 74
Query: 153 RSYYRGAAGALMVIDVS 169
++YRGA ++V DV+
Sbjct: 75 VAFYRGADCCVLVFDVT 91
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGK+ L++Q+ +K+
Sbjct: 15 GDSGVGKTSLMNQYVNKKF 33
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GVGKS ++ +F + F + TIG F T+ + E K IWDTAGQERF ++
Sbjct: 30 GDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLA 89
Query: 153 RSYYRGAAGALMVIDVS 169
YYRG+A A++V D++
Sbjct: 90 PMYYRGSAAAVIVYDIT 106
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 10/87 (11%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEVHGE--------KIKLQIWDT 142
GD GVGK+ L+++T+ KF P T+G++F + + + G K+ LQ+WDT
Sbjct: 18 GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDT 77
Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVS 169
AG ERFR++T +++R A G L++ D++
Sbjct: 78 AGLERFRSLTTAFFRDAMGFLLMFDLT 104
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGK+ L+++T+ K+
Sbjct: 18 GDSGVGKTTFLYRYTDNKF 36
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 10/87 (11%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEVHGE--------KIKLQIWDT 142
GD GVGK+ L+++T+ KF P T+G++F + + + G K+ LQ+WDT
Sbjct: 18 GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDT 77
Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVS 169
AG ERFR++T +++R A G L+ D++
Sbjct: 78 AGLERFRSLTTAFFRDAXGFLLXFDLT 104
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGK+ L+++T+ K+
Sbjct: 18 GDSGVGKTTFLYRYTDNKF 36
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGKS ++ +F F + TIG F T+ + ++ +K +IWDTAGQERF ++
Sbjct: 10 GEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA 69
Query: 153 RSYYRGAAGALMVIDVS 169
YYR A AL+V DV+
Sbjct: 70 PXYYRNAQAALVVYDVT 86
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 10/87 (11%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEVHGE--------KIKLQIWDT 142
GD GVGK+ L+++T+ KF P T+G++F + + + G K+ LQ+WDT
Sbjct: 18 GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDT 77
Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVS 169
AG ERFR++T +++R A G L+ D++
Sbjct: 78 AGLERFRSLTTAFFRDAXGFLLXFDLT 104
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGK+ L+++T+ K+
Sbjct: 18 GDSGVGKTTFLYRYTDNKF 36
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 56/88 (63%), Gaps = 10/88 (11%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH----------GEKIKLQIWDT 142
GD GVGK+ +L+Q+T+ KF T+G++F + + G++I LQ+WDT
Sbjct: 18 GDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDT 77
Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVSH 170
AG ERFR++T +++R A G L++ D+++
Sbjct: 78 AGLERFRSLTTAFFRDAMGFLLLFDLTN 105
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGK+ +L+Q+T+ K+
Sbjct: 18 GDSGVGKTSVLYQYTDGKF 36
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 10/87 (11%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEVHGE--------KIKLQIWDT 142
GD GVGK+ L+++T+ KF P T+G++F + + + G K+ LQ+WDT
Sbjct: 18 GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDT 77
Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVS 169
AG ERFR++T +++R A G L++ D++
Sbjct: 78 AGLERFRSLTTAFFRDAMGFLLMFDLT 104
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD GVGK+ L+++T+ K+
Sbjct: 18 GDSGVGKTTFLYRYTDNKF 36
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGK+ ++ +F F + TIG++F ++ + + ++LQ+WDTAGQERFR++
Sbjct: 8 GEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLI 67
Query: 153 RSYYRGAAGALMVIDVSH 170
SY R +A A++V D+++
Sbjct: 68 PSYIRDSAAAIVVYDITN 85
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 51/80 (63%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGK+ L+ +F F TIG++F ++ + + ++LQ+WDTAGQERFR++
Sbjct: 8 GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 67
Query: 153 RSYYRGAAGALMVIDVSHVK 172
SY R + A++V D+++V
Sbjct: 68 PSYIRDSTVAVVVYDITNVN 87
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 50/77 (64%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGK+ L+ ++ E KF T+G F T+ + + G+++ L IWDTAGQERF A+
Sbjct: 13 GEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 72
Query: 153 RSYYRGAAGALMVIDVS 169
YYR + GA++V D++
Sbjct: 73 PIYYRDSNGAILVYDIT 89
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGK+ L+ +F F TIG++F ++ + + I+LQ+WDTAG ERFR++
Sbjct: 20 GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLI 79
Query: 153 RSYYRGAAGALMVIDVSHVK 172
SY R +A A++V D+++V
Sbjct: 80 PSYIRDSAAAVVVYDITNVN 99
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGK+ L+ +F F TIG++F ++ + + ++LQ+WDTAGQERFR++
Sbjct: 9 GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 68
Query: 153 RSYYRGAAGALMVIDVSHVK 172
SY R + A++V D++++
Sbjct: 69 PSYIRDSTVAVVVYDITNLN 88
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 14 GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 73
Query: 153 RSYYRGAAGALMVIDVSH 170
YYRGA A++V D+++
Sbjct: 74 PXYYRGAQAAIVVYDITN 91
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 10 GESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 69
Query: 153 RSYYRGAAGALMVIDVSH 170
YYRGA A++V D+++
Sbjct: 70 PMYYRGAQAAIVVYDITN 87
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 14 GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 73
Query: 153 RSYYRGAAGALMVIDVSH 170
YYRGA A++V D+++
Sbjct: 74 PMYYRGAQAAIVVYDITN 91
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 13 GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 153 RSYYRGAAGALMVIDVSH 170
YYRGA A++V D+++
Sbjct: 73 PMYYRGAQAAIVVYDITN 90
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGK+ L+ +F F TIG++F ++ + + ++LQ+WDTAGQERFR++
Sbjct: 21 GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 80
Query: 153 RSYYRGAAGALMVIDVSHVK 172
SY R + A++V D+++
Sbjct: 81 PSYIRDSTVAVVVYDITNTN 100
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 15 GESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLA 74
Query: 153 RSYYRGAAGALMVIDVSH 170
YYRGA A++V D+++
Sbjct: 75 PMYYRGAQAAIVVYDITN 92
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 13 GESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 153 RSYYRGAAGALMVIDVSH 170
YYRGA A++V D+++
Sbjct: 73 PMYYRGAQAAIVVYDITN 90
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 13 GESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 153 RSYYRGAAGALMVIDVSH 170
YYRGA A++V D+++
Sbjct: 73 PMYYRGAQAAIVVYDITN 90
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGK+ L+ ++ E KF T+ F T+ + + G+++ L IWDTAGQERF A+
Sbjct: 13 GEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 72
Query: 153 RSYYRGAAGALMVIDVS 169
YYR + GA++V D++
Sbjct: 73 PIYYRDSNGAILVYDIT 89
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGK+ L+ ++ E KF T+ F T+ + + G+++ L IWDTAGQERF A+
Sbjct: 27 GEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 86
Query: 153 RSYYRGAAGALMVIDVS 169
YYR + GA++V D++
Sbjct: 87 PIYYRDSNGAILVYDIT 103
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 13 GESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 153 RSYYRGAAGALMVIDVSH 170
YYRGA A++V D+++
Sbjct: 73 PMYYRGAQAAIVVYDITN 90
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 13 GESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 153 RSYYRGAAGALMVIDVSH 170
YYRGA A++V D+++
Sbjct: 73 PMYYRGAQAAIVVYDITN 90
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGK+ L+ +F F TIG++F ++ + + ++LQ+WDTAG ERFR++
Sbjct: 13 GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLI 72
Query: 153 RSYYRGAAGALMVIDVSHVK 172
SY R + A++V D+++V
Sbjct: 73 PSYIRDSTVAVVVYDITNVN 92
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQER+ ++
Sbjct: 13 GESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 153 RSYYRGAAGALMVIDVSH 170
YYRGA A++V D+++
Sbjct: 73 PMYYRGAQAAIVVYDITN 90
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGK+ L+ +F F TIG++F ++ + + ++LQ+WDTAG ERFR++
Sbjct: 23 GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLI 82
Query: 153 RSYYRGAAGALMVIDVSHVK 172
SY R + A++V D+++V
Sbjct: 83 PSYIRDSTVAVVVYDITNVN 102
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGKS L+ +F + +F TI F T+ + + +K +IWDTAGQER+ ++
Sbjct: 12 GESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 71
Query: 153 RSYYRGAAGALMVIDVSH 170
YYRGA A++V D+++
Sbjct: 72 PMYYRGAQAAIVVYDITN 89
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAG ER+ ++
Sbjct: 12 GESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLA 71
Query: 153 RSYYRGAAGALMVIDVSH 170
YYRGA A++V D+++
Sbjct: 72 PMYYRGAQAAIVVYDITN 89
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAG ER+ ++
Sbjct: 12 GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLA 71
Query: 153 RSYYRGAAGALMVIDVSH 170
YYRGA A++V D+++
Sbjct: 72 PMYYRGAQAAIVVYDITN 89
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIG-VEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 151
GD GVGK+ +++ + +F + T+G V ++ G IK +WDTAGQE+ +
Sbjct: 18 GDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL 77
Query: 152 TRSYYRGAAGALMVIDVS 169
YY GA+GA++ DV+
Sbjct: 78 KDVYYIGASGAILFFDVT 95
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 37/115 (32%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV---------------------- 130
G+ VGKS ++ + T+ F + TIG F T ++ +
Sbjct: 14 GESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSIND 73
Query: 131 ---------HGE------KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
H IK IWDTAGQER+ ++ YYRGA A++V D+S+
Sbjct: 74 DNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD VGK+CLL +T F D T+ F ++ V+G + L +WDTAGQE + +
Sbjct: 15 GDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQEDYNRLR 73
Query: 153 RSYYRGA 159
YRGA
Sbjct: 74 PLSYRGA 80
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G GVGKS L QF +F+ D T + +++ + GE++++ I DTAGQE + A+
Sbjct: 25 GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIR 83
Query: 153 RSYYRGAAGALMVIDVSHVK 172
+Y+R G L V ++ ++
Sbjct: 84 DNYFRSGEGFLCVFSITEME 103
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G GVGKS L QF +F+ D T + +++ + GE++++ I DTAGQE + A+
Sbjct: 13 GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIR 71
Query: 153 RSYYRGAAGALMVIDVSHVK 172
+Y+R G L V ++ ++
Sbjct: 72 DNYFRSGEGFLCVFSITEME 91
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G GVGKS L QF +F+ D T + +++ + GE++++ I DTAGQE + A+
Sbjct: 11 GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIR 69
Query: 153 RSYYRGAAGALMVIDVSHVK 172
+Y+R G L V ++ ++
Sbjct: 70 DNYFRSGEGFLCVFSITEME 89
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G GVGKS L QF +F+ D T + +++ + GE++++ I DTAGQE + A+
Sbjct: 21 GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIR 79
Query: 153 RSYYRGAAGALMVIDVSHVK 172
+Y+R G L V ++ ++
Sbjct: 80 DNYFRSGEGFLCVFSITEME 99
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD VGK+C+L +T F D T+ F ++ V G + L +WDTAGQE + +
Sbjct: 13 GDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQEDYNRLR 71
Query: 153 RSYYRGA 159
YRGA
Sbjct: 72 PLSYRGA 78
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G GVGKS L QF +F+ D T + +++ + GE++++ I DTAG E + A+
Sbjct: 14 GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIR 72
Query: 153 RSYYRGAAGALMVIDVSH 170
+Y+R G L+V ++
Sbjct: 73 DNYFRSGEGFLLVFSITE 90
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G GVGKS L QF +F+ D T + +++ + GE++++ I DTAG E + A+
Sbjct: 10 GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIR 68
Query: 153 RSYYRGAAGALMVIDVSH 170
+Y+R G L+V ++
Sbjct: 69 DNYFRSGEGFLLVFSITE 86
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD VGK+C+L +T F D T+ F ++ V G + L +WDTAGQE + +
Sbjct: 13 GDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLR 71
Query: 153 RSYYRGA 159
YRGA
Sbjct: 72 PLSYRGA 78
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD VGK+C+L +T KF D T+ F + V G+ + L +WDTAGQE + +
Sbjct: 16 GDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNLGLWDTAGQEDYSRLR 74
Query: 153 RSYYRGA 159
YRGA
Sbjct: 75 PLSYRGA 81
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G GVGKS L QF +F+ D T + +++ + GE++++ I DTAG E + A+
Sbjct: 13 GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIR 71
Query: 153 RSYYRGAAGALMVIDVSHVK 172
+Y+R G L V ++ ++
Sbjct: 72 DNYFRSGEGFLCVFSITEME 91
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 93 GDMGVGKSCLLHQFT----EQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD G GK+ + + E+K++P T+GVE + + IK +WDTAGQE+F
Sbjct: 17 GDGGTGKTTFVKRHLTGEFEKKYVP----TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 72
Query: 149 RAVTRSYYRGAAGALMVIDVS 169
+ YY A A+++ DV+
Sbjct: 73 GGLRDGYYIQAQCAIIMFDVT 93
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 93 GDMGVGKSCLLHQFT----EQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD G GK+ + + E+K++P T+GVE + + IK +WDTAGQE+F
Sbjct: 17 GDGGTGKTTFVKRHLTGEFEKKYVP----TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 72
Query: 149 RAVTRSYYRGAAGALMVIDVS 169
+ YY A A+++ DV+
Sbjct: 73 GGLRDGYYIQAQCAIIMFDVT 93
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G VGKS L QF E +F+ TI F T++I V+G++ LQ+ DTAGQ+ +
Sbjct: 11 GYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP 69
Query: 153 RSYYRGAAGALMVIDVSHVK 172
++Y G ++V V+ +K
Sbjct: 70 QTYSIDINGYILVYSVTSIK 89
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD G GK+ + + +F T+GVE + + IK +WDTAGQE+F +
Sbjct: 17 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 76
Query: 153 RSYYRGAAGALMVIDVS 169
YY A A+++ DV+
Sbjct: 77 DGYYIQAQCAIIMFDVT 93
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD G GK+ + + +F T+GVE + + IK +WDTAGQE+F +
Sbjct: 10 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 69
Query: 153 RSYYRGAAGALMVIDVS 169
YY A A+++ DV+
Sbjct: 70 DGYYIQAQCAIIMFDVT 86
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD G GK+ + + +F T+GVE + + IK +WDTAGQE+F +
Sbjct: 17 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLE 76
Query: 153 RSYYRGAAGALMVIDVS 169
YY A A+++ DV+
Sbjct: 77 DGYYIQAQCAIIMFDVT 93
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD G GK+ + + +F T+GVE + + IK +WDTAGQE+F +
Sbjct: 17 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 76
Query: 153 RSYYRGAAGALMVIDVS 169
YY A A+++ DV+
Sbjct: 77 DGYYIQAQCAIIMFDVT 93
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD G GK+ + + +F T+GVE + + IK +WDTAGQE+F +
Sbjct: 17 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 76
Query: 153 RSYYRGAAGALMVIDVS 169
YY A A+++ DV+
Sbjct: 77 DGYYIQAQCAIIMFDVT 93
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD G GK+ + + +F T+GVE + + IK +WDTAGQE+F +
Sbjct: 22 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 81
Query: 153 RSYYRGAAGALMVIDVS 169
YY A A+++ DV+
Sbjct: 82 DGYYIQAQCAIIMFDVT 98
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G VGKS L QF E +F+ TI F T++I V+G++ LQ+ DTAGQ+ +
Sbjct: 13 GYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP 71
Query: 153 RSYYRGAAGALMVIDVSHVK 172
++Y G ++V V+ +K
Sbjct: 72 QTYSIDINGYILVYSVTSIK 91
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G VGKS L QF E +F+ TI F T++I V+G++ LQ+ DTAGQ+ +
Sbjct: 13 GYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP 71
Query: 153 RSYYRGAAGALMVIDVSHVK 172
++Y G ++V V+ +K
Sbjct: 72 QTYSIDINGYILVYSVTSIK 91
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G VGKS L QF E +F+ TI F T++I V+G++ LQ+ DTAGQ+ +
Sbjct: 8 GYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP 66
Query: 153 RSYYRGAAGALMVIDVSHVK 172
++Y G ++V V+ +K
Sbjct: 67 QTYSIDINGYILVYSVTSIK 86
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD G GK+ + + +F T+GVE + + IK +WDTAGQE+F +
Sbjct: 17 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 76
Query: 153 RSYYRGAAGALMVIDVS 169
YY A A++ DV+
Sbjct: 77 DGYYIQAQCAIIXFDVT 93
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD G GK+ + + +F T+GVE + + IK +WDTAGQE++ +
Sbjct: 17 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLR 76
Query: 153 RSYYRGAAGALMVIDVS 169
YY A A+++ DV+
Sbjct: 77 DGYYIQAQCAIIMFDVT 93
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
G GK+ +L++ + + P TIG T V + I +WD GQ+R R++ R Y
Sbjct: 27 GAGKTTVLYKLKLGEVITTIP-TIGFNVET----VQYKNISFTVWDVGGQDRIRSLWRHY 81
Query: 156 YRGAAGALMVID 167
YR G + VID
Sbjct: 82 YRNTEGVIFVID 93
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE-KIKLQIWDTAGQERFRAV 151
GD GK+ L F ++ F TIG++F R I + G + LQIWD GQ +
Sbjct: 13 GDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM 72
Query: 152 TRSYYRGAAGALMVIDVSH 170
Y GA G L+V D+++
Sbjct: 73 LDKYIYGAQGVLLVYDITN 91
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 93 GDMGVGKSCLLHQF----TEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD G GK+ + + +E+K++ T+GVE + + IK +WDTAGQE+F
Sbjct: 22 GDGGTGKTTFVKRHLTGESEKKYV----ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 77
Query: 149 RAVTRSYYRGAAGALMVIDVS 169
+ YY A A+++ DV+
Sbjct: 78 GGLRDGYYIQAQCAIIMFDVT 98
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
G GK+ +L++ + + P TIG T V + I +WD GQ+R R++ R Y
Sbjct: 27 GAGKTTVLYKLKLGEVITTIP-TIGFNVET----VQYKNISFTVWDVGGQDRIRSLWRHY 81
Query: 156 YRGAAGALMVID 167
YR G + V+D
Sbjct: 82 YRNTEGVIFVVD 93
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
G GK+ +L++ + + P TIG T V + I +WD GQ+R R++ R Y
Sbjct: 10 GAGKTTVLYKLKLGEVITTIP-TIGFNVET----VQYKNISFTVWDVGGQDRIRSLWRHY 64
Query: 156 YRGAAGALMVID 167
YR G + V+D
Sbjct: 65 YRNTEGVIFVVD 76
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD G GK+ + + +F T+GVE + + IK +WDTAG E+F +
Sbjct: 19 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLR 78
Query: 153 RSYYRGAAGALMVIDVS 169
YY A A+++ DV+
Sbjct: 79 DGYYIQAQCAIIMFDVT 95
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD G GK+ + + +F T+GVE + + IK +WDTAG E+F +
Sbjct: 13 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLR 72
Query: 153 RSYYRGAAGALMVIDVS 169
YY A A+++ DV+
Sbjct: 73 DGYYIQAQCAIIMFDVT 89
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G GVGKS L Q + F+ + TI + +++ + GE L I DTAGQE + A+
Sbjct: 10 GARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMR 68
Query: 153 RSYYRGAAGALMVIDVSHVK 172
Y R G L V +++ K
Sbjct: 69 DQYMRTGEGFLCVFAINNTK 88
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD G GK+ + + +F T+GVE + + IK +WDTAG E+F +
Sbjct: 17 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLR 76
Query: 153 RSYYRGAAGALMVIDVS 169
YY A A+++ DV+
Sbjct: 77 DGYYIQAQCAIIMFDVT 93
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD G GK+ + + +F TIGVE + +IK +WDTAG E+F +
Sbjct: 12 GDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLR 71
Query: 153 RSYYRGAAGALMVIDVS 169
YY A A+++ DV+
Sbjct: 72 DGYYINAQCAIIMFDVT 88
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G GVGKS L Q + F+ + TI + +++ + GE L I DTAGQE + A+
Sbjct: 10 GAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMR 68
Query: 153 RSYYRGAAGALMVIDVSHVK 172
Y R G L V +++ K
Sbjct: 69 DQYMRTGEGFLCVFAINNTK 88
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G GVGKS L Q + F+ + TI + +++ + GE L I DTAGQE + A+
Sbjct: 10 GAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMR 68
Query: 153 RSYYRGAAGALMVIDVSHVK 172
Y R G L V +++ K
Sbjct: 69 DQYMRTGEGFLCVFAINNTK 88
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD G GK+ + + +F TIGVE + +IK +WDTAG E+F +
Sbjct: 11 GDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLR 70
Query: 153 RSYYRGAAGALMVIDVS 169
YY A A+++ DV+
Sbjct: 71 DGYYINAQCAIIMFDVT 87
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G GVGKS L Q + F+ + TI + +++ + GE L I DTAGQE + A+
Sbjct: 10 GADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMR 68
Query: 153 RSYYRGAAGALMVIDVSHVK 172
Y R G L V +++ K
Sbjct: 69 DQYMRTGEGFLCVFAINNTK 88
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G GVGKS L Q + F+ + TI + +++ + GE L I DTAGQE + A+
Sbjct: 11 GADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMR 69
Query: 153 RSYYRGAAGALMVIDVSHVK 172
Y R G L V +++ K
Sbjct: 70 DQYMRTGEGFLCVFAINNTK 89
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G GVGKS L Q + F+ + TI + +++ + GE L I DTAGQE + A+
Sbjct: 11 GADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMR 69
Query: 153 RSYYRGAAGALMVIDVSHVK 172
Y R G L V +++ K
Sbjct: 70 DQYMRTGEGFLCVFAINNTK 89
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD G GK+ + + +F TIGVE + +IK +WDTAG E+F +
Sbjct: 19 GDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLR 78
Query: 153 RSYYRGAAGALMVIDVS 169
YY A A+++ DV+
Sbjct: 79 DGYYINAQCAIIMFDVT 95
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-RAV 151
GD+ GK+CLL F++ +F P E IEV G++++L +WDTAGQE + RA
Sbjct: 12 GDVACGKTCLLIVFSKDQF-PAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRAR 70
Query: 152 TRSY 155
SY
Sbjct: 71 PLSY 74
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD+ GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 13 GDVACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 71
Query: 153 RSYYRGAAGALMVIDVS 169
Y LM +
Sbjct: 72 PLSYPDTDVILMCFSID 88
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 93 GDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEVHGEKIKLQIW--DTAGQERF 148
G+ VGKS L+ FT + KF+ D T GVE + + + ++++ DTAG + +
Sbjct: 27 GEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY 86
Query: 149 RAVTRSYYRGAAGALMVIDVSHVK 172
+ Y+ G A++V DVS ++
Sbjct: 87 KEQISQYWNGVYYAILVFDVSSME 110
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L QF + F+ D TI + T+I V G +L I DTAGQE F A+ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 159 AAGALMVIDVS 169
G L+V ++
Sbjct: 81 GHGFLLVFAIN 91
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 32 GDGACGKTCLLIVFSKDEF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 90
Query: 153 RSYYRGAAGALMVIDVS 169
Y LM V
Sbjct: 91 PLSYPDTDVILMCFSVD 107
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ +C TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD G GK+ LL F + F T+ + + +V G+ + L IWDTAGQ+ + +
Sbjct: 41 GDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL-QVKGKPVHLHIWDTAGQDDYDRLR 99
Query: 153 RSYYRGAAGALMVIDVS 169
+Y A+ L+ DV+
Sbjct: 100 PLFYPDASVLLLCFDVT 116
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 13 GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 71
Query: 153 RSYYRGAAGALMVIDVS 169
Y LM +
Sbjct: 72 PLSYPDTDVILMCFSID 88
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 12 GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 153 RSYYRGAAGALMVIDVS 169
Y LM +
Sbjct: 71 PLSYPDTDVILMCFSID 87
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 14 GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 72
Query: 153 RSYYRGAAGALMVIDVS 169
Y LM +
Sbjct: 73 PLSYPDTDVILMCFSID 89
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 16 GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 74
Query: 153 RSYYRGAAGALMVIDVS 169
Y LM +
Sbjct: 75 PLSYPDTDVILMCFSID 91
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 15 GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 73
Query: 153 RSYYRGAAGALMVIDVS 169
Y LM +
Sbjct: 74 PLSYPDTDVILMCFSID 90
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE +
Sbjct: 17 GDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 71
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 14 GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 72
Query: 153 RSYYRGAAGALMVIDVS 169
Y LM +
Sbjct: 73 PLSYPDTDVILMCFSID 89
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE +
Sbjct: 29 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 83
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 32 GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR 90
Query: 153 RSYYRGAAGALMVIDVS 169
Y LM +
Sbjct: 91 PLSYPDTDVILMCFSID 107
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE +
Sbjct: 20 GDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 74
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 64
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 64
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE +
Sbjct: 11 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 65
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 14 GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 72
Query: 153 RSYYRGAAGALMVIDVS 169
Y LM +
Sbjct: 73 PLSYPDTDVILMCFSID 89
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE +
Sbjct: 11 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 65
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+CLL F++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 32 GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR 90
Query: 153 RSYYRGAAGALMVIDVS 169
Y LM +
Sbjct: 91 PLSYPDTDVILMCFSID 107
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+ LLH F + F + T+ E T E+ ++I+L +WDT+G + V
Sbjct: 14 GDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPYYDNVR 72
Query: 153 RSYYRGAAGALMVIDVS 169
Y + L+ D+S
Sbjct: 73 PLSYPDSDAVLICFDIS 89
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 64
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE + +
Sbjct: 12 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 70
Query: 153 RSYYRGAAGALMVIDVS 169
Y G D++
Sbjct: 71 PLSYPQTVGETYGKDIT 87
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE +
Sbjct: 14 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 68
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE +
Sbjct: 37 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 91
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 64
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE +
Sbjct: 12 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 66
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G +GVGKS L QF + F+ TI + ++ EV ++ L+I DTAG E+F A+
Sbjct: 12 GSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQFTAMR 70
Query: 153 RSYYRGAAGALMVIDVS 169
Y + G +V ++
Sbjct: 71 DLYMKNGQGFALVYSIT 87
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+ LLH F + F + T+ E T E+ ++I+L +WDT+G + V
Sbjct: 35 GDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPYYDNVR 93
Query: 153 RSYYRGAAGALMVIDVS 169
Y + L+ D+S
Sbjct: 94 PLSYPDSDAVLICFDIS 110
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 64
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+ LLH F + F + T+ E T E+ ++I+L +WDT+G + V
Sbjct: 30 GDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPYYDNVR 88
Query: 153 RSYYRGAAGALMVIDVSH 170
Y + L+ D+S
Sbjct: 89 PLSYPDSDAVLICFDISR 106
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 64
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 64
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 64
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD+ VGK+CLL +T F + T+ + ++ V + + L +WDTAGQE +
Sbjct: 17 GDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDY 71
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 64
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD+ VGK+CLL +T F + T+ + ++ V + + L +WDTAGQE +
Sbjct: 16 GDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDY 70
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L QF ++ F+PD TI + + E+ + L + DTAGQE F A+ Y R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 159 AAGALMVIDVS 169
G L+V V+
Sbjct: 85 GDGFLIVYSVT 95
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD+ VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE +
Sbjct: 10 GDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 64
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 22 GDMGVGKSCLLHQFTEQKY 40
GD+ VGK+CLL +T K+
Sbjct: 10 GDVAVGKTCLLISYTTNKF 28
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G GVGKS L QF + F+ TI + ++ EV ++ L+I DTAG E+F A+
Sbjct: 10 GSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQFTAMR 68
Query: 153 RSYYRGAAGALMVIDVS 169
Y + G +V ++
Sbjct: 69 DLYMKNGQGFALVYSIT 85
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L++ + + P T+G T V + +K +WD GQ++ R + R Y
Sbjct: 23 AAGKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHY 77
Query: 156 YRGAAGALMVID 167
Y G G + V+D
Sbjct: 78 YTGTQGLIFVVD 89
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L++ + + P T+G T V + +K +WD GQ++ R + R Y
Sbjct: 10 AAGKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHY 64
Query: 156 YRGAAGALMVIDVS 169
Y G G + V+D +
Sbjct: 65 YTGTQGLIFVVDCA 78
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L +F + P T+G F + +E G KL IWD GQ+ R+ R+Y
Sbjct: 26 NAGKTTILKKFNGEDIDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNY 80
Query: 156 YRGAAGALMVID 167
+ G + V+D
Sbjct: 81 FESTDGLIWVVD 92
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L++ + + P T+G T V + +K +WD GQ++ R + R Y
Sbjct: 22 AAGKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHY 76
Query: 156 YRGAAGALMVID 167
Y G G + V+D
Sbjct: 77 YTGTQGLIFVVD 88
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L++ + + P T+G T V + +K +WD GQ++ R + R Y
Sbjct: 10 AAGKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHY 64
Query: 156 YRGAAGALMVIDVS 169
Y G G + V+D +
Sbjct: 65 YTGTQGLIFVVDCA 78
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G GVGKS L QF + F+ + TI + ++ EV ++ L+I DTAG E+F A+
Sbjct: 10 GSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQFTAMR 68
Query: 153 RSYYRGAAGALMVIDVS 169
Y + G +V ++
Sbjct: 69 DLYMKNGQGFALVYSIT 85
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L++ + + P T+G T V + +K +WD GQ++ R + R Y
Sbjct: 10 AAGKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHY 64
Query: 156 YRGAAGALMVIDVS 169
Y G G + V+D +
Sbjct: 65 YTGTQGLIFVVDCA 78
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L +F + P T+G F + +E G KL IWD GQ+ R+ R+Y
Sbjct: 28 NAGKTTILKKFNGEDVDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNY 82
Query: 156 YRGAAGALMVID 167
+ G + V+D
Sbjct: 83 FESTDGLIWVVD 94
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L +F + P T+G F + +E G KL IWD GQ+ R+ R+Y
Sbjct: 28 NAGKTTILKKFNGEDVDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNY 82
Query: 156 YRGAAGALMVID 167
+ G + V+D
Sbjct: 83 FESTDGLIWVVD 94
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T + T+ + ++ V G+ + L +WDTAGQE +
Sbjct: 37 GDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 91
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L +F + P T+G F + +E G KL IWD GQ+ R+ R+Y
Sbjct: 28 NAGKTTILKKFNGEDVDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNY 82
Query: 156 YRGAAGALMVID 167
+ G + V+D
Sbjct: 83 FESTDGLIWVVD 94
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V + + L +WDTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDY 64
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L QF + F+ D TI + + + + +L I DTAGQE F A+ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 159 AAGALMVIDVS 169
G L+V V+
Sbjct: 77 GEGFLLVFSVT 87
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L++ + + P T+G T V + +K +WD GQ++ R + R Y
Sbjct: 332 AAGKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHY 386
Query: 156 YRGAAGALMVIDVS 169
Y G G + V+D +
Sbjct: 387 YTGTQGLIFVVDCA 400
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAG E +
Sbjct: 37 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDY 91
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE +
Sbjct: 14 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 68
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE +
Sbjct: 12 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 66
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 64
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+CLL ++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 12 GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 153 RSYYRGAAGALMVIDVS 169
Y LM +
Sbjct: 71 PLSYPDTDVILMCFSID 87
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 64
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 64
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ LL Q + D H + G I V + KL +WD GQ + R RSY
Sbjct: 26 NAGKTTLLKQLASE----DISHITPTQ-GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSY 80
Query: 156 YRGAAGALMVIDVSHVK 172
+ + VID + K
Sbjct: 81 FENTDILIYVIDSADRK 97
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 82 GEGFLCVFAINNTK 95
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ LL Q + D H + G I V + KL +WD GQ + R RSY
Sbjct: 27 NAGKTTLLKQLASE----DISHITPTQ-GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSY 81
Query: 156 YRGAAGALMVIDVSHVK 172
+ + VID + K
Sbjct: 82 FENTDILIYVIDSADRK 98
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+CLL ++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 10 GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 68
Query: 153 RSYYRGAAGALMVIDVS 169
Y LM +
Sbjct: 69 PLSYPDTDVILMCFSID 85
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAG E +
Sbjct: 13 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDY 67
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+CLL ++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 10 GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 68
Query: 153 RSYYRGAAGALMVIDVS 169
Y LM +
Sbjct: 69 PLSYPDTDVILMCFSID 85
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 64
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE +
Sbjct: 17 GDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 71
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+CLL ++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 12 GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 153 RSYYRGAAGALMVIDVS 169
Y LM +
Sbjct: 71 PLSYPDTDVILMCFSID 87
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L QF ++ F+P+ TI + + E+ + L + DTAGQE F A+ Y R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 159 AAGALMVIDVS 169
G L+V V+
Sbjct: 90 GDGFLIVYSVT 100
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G GVGKS L QF + F+ TI + ++ EV ++ L+I DTAG E+F A+
Sbjct: 10 GSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQFTAMR 68
Query: 153 RSYYRGAAGALMVIDVS 169
Y + G +V ++
Sbjct: 69 DLYMKNGQGFALVYSIT 85
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE +
Sbjct: 20 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 74
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE +
Sbjct: 17 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 71
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 80 GEGFLCVFAINNTK 93
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 80 GEGFLCVFAINNTK 93
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAG E +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDY 64
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE +
Sbjct: 11 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 65
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+CLL ++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 12 GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 153 RSYYRGAAGALMVIDVS 169
Y LM +
Sbjct: 71 PLSYPDTDVILMCFSID 87
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 64
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 64
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE +
Sbjct: 13 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 67
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE +
Sbjct: 13 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 67
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAG E +
Sbjct: 10 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDY 64
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD VGK+CLL F++ + T+ F + +++ E+ L +WDTAGQE + +
Sbjct: 30 GDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLR 88
Query: 153 RSYYRGAAGALMVIDVSH 170
Y + L+ V++
Sbjct: 89 PLSYADSDVVLLCFAVNN 106
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD VGK+CLL F++ + T+ F + +++ E+ L +WDTAGQE + +
Sbjct: 29 GDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLR 87
Query: 153 RSYYRGAAGALMVIDVSH 170
Y + L+ V++
Sbjct: 88 PLSYADSDVVLLCFAVNN 105
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ LL Q + D H + G I V + KL +WD GQ + R RSY
Sbjct: 14 NAGKTTLLKQLASE----DISHITPTQ-GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSY 68
Query: 156 YRGAAGALMVIDVSHVK 172
+ + VID + K
Sbjct: 69 FENTDILIYVIDSADRK 85
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 64
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 93 GEGFLCVFAINNSK 106
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 98 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 157
GK+ ++ +F D T+G F R +V + ++IWD GQ RFR++ Y R
Sbjct: 34 GKTTFVNVIASGQFSEDMIPTVG--FNMR--KVTKGNVTIKIWDIGGQPRFRSMWERYCR 89
Query: 158 GAAGALMVIDVS 169
G + +ID +
Sbjct: 90 GVNAIVYMIDAA 101
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAGQE +
Sbjct: 12 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 66
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+CLL ++ +F P+ E IEV G++++L +WDTAGQE + +
Sbjct: 12 GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 153 RSYYRGAAGALMVIDVS 169
Y LM +
Sbjct: 71 PLSYPDTDVILMCFSID 87
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 97 VGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYY 156
VGK+ L HQF E +F T+ + ++I+ + ++ L + DTAGQ+ + + S+
Sbjct: 35 VGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFI 93
Query: 157 RGAAGALMVIDVS 169
G G ++V V+
Sbjct: 94 IGVHGYVLVYSVT 106
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 76 GEGFLCVFAINNTK 89
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 76 GEGFLCVFAINNTK 89
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAG E +
Sbjct: 162 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDY 216
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
G GK+ +L++ + + P TIG F ++ I +WD GQ+R R++ R Y
Sbjct: 27 GAGKTTVLYKLKLGEVITTIP-TIG--FNVECVQYC--NISFTVWDVGGQDRIRSLWRHY 81
Query: 156 YRGAAGALMVID 167
Y G + V+D
Sbjct: 82 YCNTEGVIFVVD 93
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAG E +
Sbjct: 162 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDY 216
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T F + T+ + ++ V G+ + L +WDTAG E +
Sbjct: 162 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDY 216
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L+QF+ + + P G+ + E+ + +WD GQE R+ +Y
Sbjct: 26 NAGKTTILYQFSMNEVVHTSP-----TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY 80
Query: 156 YRGAAGALMVID 167
Y ++V+D
Sbjct: 81 YTNTEFVIVVVD 92
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L+QF+ + + P G+ + E+ + +WD GQE R+ +Y
Sbjct: 31 NAGKTTILYQFSMNEVVHTSP-----TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY 85
Query: 156 YRGAAGALMVID 167
Y ++V+D
Sbjct: 86 YTNTEFVIVVVD 97
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L+QF+ + + P G+ + E+ + +WD GQE R+ +Y
Sbjct: 26 NAGKTTILYQFSMNEVVHTSP-----TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY 80
Query: 156 YRGAAGALMVID 167
Y ++V+D
Sbjct: 81 YTNTEFVIVVVD 92
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L+QF+ + + P G+ + E+ + +WD GQE R+ +Y
Sbjct: 32 NAGKTTILYQFSMNEVVHTSP-----TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY 86
Query: 156 YRGAAGALMVID 167
Y ++V+D
Sbjct: 87 YTNTEFVIVVVD 98
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L++ + + P TIG T V + I +WD GQ++ R + R Y
Sbjct: 10 AAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHY 64
Query: 156 YRGAAGALMVID 167
++ G + V+D
Sbjct: 65 FQNTQGLIFVVD 76
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L++ + + P TIG T V + I +WD GQ++ R + R Y
Sbjct: 27 AAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHY 81
Query: 156 YRGAAGALMVID 167
++ G + V+D
Sbjct: 82 FQNTQGLIFVVD 93
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + + + GE L ++DTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQEDY 64
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L++ + + P TIG T V + I +WD GQ++ R + R Y
Sbjct: 30 AAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHY 84
Query: 156 YRGAAGALMVID 167
++ G + V+D
Sbjct: 85 FQNTQGLIFVVD 96
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L++ + + P TIG T V + I +WD GQ++ R + R Y
Sbjct: 26 AAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHY 80
Query: 156 YRGAAGALMVID 167
++ G + V+D
Sbjct: 81 FQNTQGLIFVVD 92
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 98 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 157
GK+ ++ +F D T+G F R I IKL WD GQ RFR++ Y R
Sbjct: 43 GKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCR 98
Query: 158 GAAGALMVIDVS 169
G + + ++D +
Sbjct: 99 GVSAIVYMVDAA 110
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L++ + + P TIG T V I +WD GQ++ R + R Y
Sbjct: 27 AAGKTTILYKVKLGEVVTTIP-TIGFNVET----VEFRNISFTVWDVGGQDKIRPLWRHY 81
Query: 156 YRGAAGALMVID 167
Y G + V+D
Sbjct: 82 YSNTDGLIFVVD 93
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 98 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 157
GK+ ++ +F D T+G F R I IKL WD GQ RFR++ Y R
Sbjct: 34 GKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCR 89
Query: 158 GAAGALMVIDVS 169
G + + ++D +
Sbjct: 90 GVSAIVYMVDAA 101
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD GK+CLL ++ +F P+ E +EV G +++L +WDTAGQE +
Sbjct: 17 GDGACGKTCLLIVNSKGQF-PEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
K+ L Q + F+ + TI + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L++ + + P TIG T V + I +WD GQ++ R + R Y
Sbjct: 27 AAGKTSILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHY 81
Query: 156 YRGAAGALMVID 167
Y+ + V+D
Sbjct: 82 YQNTQAIIFVVD 93
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + +I + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 81 GEGFLCVFAINNTK 94
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + +I + +++ + GE L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + ++ + GE L + DTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLRDTAGQEDY 64
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
G GK+ +L++ + + P TIG T + + +KL +WD GQ R R Y
Sbjct: 28 GAGKTTILYRLQIGEVVTTKP-TIGFNVET----LSYKNLKLNVWDLGGQTSIRPYWRCY 82
Query: 156 YRGAAGALMVID 167
Y A + V+D
Sbjct: 83 YADTAAVIFVVD 94
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
G GK+ +L++ + + P TIG T V + +K Q+WD GQ R R Y
Sbjct: 12 GAGKTTILYRLQVGEVVTTIP-TIGFNVET----VTYKNLKFQVWDLGGQTSIRPYWRCY 66
Query: 156 YRGAAGALMVID 167
Y + V+D
Sbjct: 67 YSNTDAVIYVVD 78
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L++ + + P T+G T V + +K +WD G ++ R + R Y
Sbjct: 12 AAGKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGLDKIRPLWRHY 66
Query: 156 YRGAAGALMVIDVS 169
Y G G + V+D +
Sbjct: 67 YTGTQGLIFVVDCA 80
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + + + ++ + GE L ++DTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 64
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L++ + + P T+G T V + +K +WD G ++ R + R Y
Sbjct: 23 AAGKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGLDKIRPLWRHY 77
Query: 156 YRGAAGALMVID 167
Y G G + V+D
Sbjct: 78 YTGTQGLIFVVD 89
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L QF ++ F+ D TI + + E+ + L + DTAGQE F A+ Y R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 159 AAGALMVIDVS 169
G L+V V+
Sbjct: 90 GDGFLIVYSVT 100
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAG+E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L++ + + P T+G T V + +K +WD G ++ R + R Y
Sbjct: 13 AAGKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGLDKIRPLWRHY 67
Query: 156 YRGAAGALMVIDVS 169
Y G G + V+D +
Sbjct: 68 YTGTQGLIFVVDCA 81
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L++ + + P TIG T V + I +WD GQ++ R + R Y
Sbjct: 175 AAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHY 229
Query: 156 YRGAAGALMVID 167
++ G + V+D
Sbjct: 230 FQNTQGLIFVVD 241
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DT GQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L+QF M + HT G+ + E+ + +WD GQE R+ +Y
Sbjct: 26 NAGKTTILYQF----LMNEVVHT-SPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTY 80
Query: 156 YRGAAGALMVID 167
Y ++V+D
Sbjct: 81 YSNTEFIILVVD 92
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L++ + + P TIG T V + I +WD GQ+R R + + Y
Sbjct: 27 AAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNICFTVWDVGGQDRIRPLWKHY 81
Query: 156 YRGAAGALMVID 167
++ G + V+D
Sbjct: 82 FQNTQGLIFVVD 93
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DT GQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L +F + P T+G F + +E G KL IWD G + R+ R+Y
Sbjct: 11 NAGKTTILKKFNGEDVDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGLKSLRSYWRNY 65
Query: 156 YRGAAGALMVID 167
+ G + V+D
Sbjct: 66 FESTDGLIWVVD 77
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T K + T+ + ++ + GE L ++DTAGQE +
Sbjct: 10 GDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 64
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTA QE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAGQE A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTA QE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAG E + A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 93 GEGFLCVFAINNTK 106
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L++ + + P TIG T V + I +WD GQ++ R + R Y
Sbjct: 39 AAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNICFTVWDVGGQDKIRPLWRHY 93
Query: 156 YRGAAGALMVID 167
++ G + V+D
Sbjct: 94 FQNTQGLIFVVD 105
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAG E +
Sbjct: 14 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGLEDY 68
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD GK+CLL ++ +F P+ E IEV G++++L +WDTAG E + +
Sbjct: 15 GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLR 73
Query: 153 RSYYRGAAGALMVIDVS 169
Y LM +
Sbjct: 74 PLSYPDTDVILMCFSID 90
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL +T KF + T+ + ++ + GE L ++DTAG E +
Sbjct: 10 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGLEDY 64
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAG E + A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 80 GEGFLCVFAINNTK 93
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ LL Q + D H + G I V + KL +WD G + R RSY
Sbjct: 14 NAGKTTLLKQLASE----DISHITPTQ-GFNIKSVQSQGFKLNVWDIGGLRKIRPYWRSY 68
Query: 156 YRGAAGALMVIDVSHVK 172
+ + VID + K
Sbjct: 69 FENTDILIYVIDSADRK 85
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L Q + F+ + TI + +++ + GE L I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
G L V +++ K
Sbjct: 75 GEGFLCVFAINNTK 88
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD+ GK+ +L Q + P+ E T +E ++++L +WDT+G + V
Sbjct: 18 GDVQCGKTAML-QVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVR 76
Query: 153 RSYYRGAAGALMVIDVSH 170
Y + L+ D+S
Sbjct: 77 PLCYSDSDAVLLCFDISR 94
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD+ GK+ +L Q + P+ E T +E ++++L +WDT+G + V
Sbjct: 34 GDVQCGKTAML-QVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVR 92
Query: 153 RSYYRGAAGALMVIDVSH 170
Y + L+ D+S
Sbjct: 93 PLCYSDSDAVLLCFDISR 110
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
GD+ GK+ +L Q + P+ E T +E ++++L +WDT+G + V
Sbjct: 17 GDVQCGKTAML-QVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVR 75
Query: 153 RSYYRGAAGALMVIDVSH 170
Y + L+ D+S
Sbjct: 76 PLCYSDSDAVLLCFDISR 93
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
GK+ +L++ + + P TIG T V + I +WD G ++ R + R Y
Sbjct: 12 AAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGLDKIRPLWRHY 66
Query: 156 YRGAAGALMVID 167
++ G + V+D
Sbjct: 67 FQNTQGLIFVVD 78
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L QF ++ F+ + TI + + E+ + L + DTAGQE F A+ Y R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSY-RKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 159 AAGALMVIDVS 169
G L+V V+
Sbjct: 90 GDGFLIVYSVT 100
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
G GK+ +L++ + + P TIG T V + +K Q+WD G R R Y
Sbjct: 14 GAGKTTILYRLQVGEVVTTIP-TIGFNVET----VTYKNLKFQVWDLGGLTSIRPYWRCY 68
Query: 156 YRGAAGALMVID 167
Y + V+D
Sbjct: 69 YSNTDAVIYVVD 80
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 96 GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
G GK+ +L++ + + P TIG T V + +K Q+WD G R R Y
Sbjct: 17 GAGKTTILYRLQVGEVVTTIP-TIGFNVET----VTYKNLKFQVWDLGGLTSIRPYWRCY 71
Query: 156 YRGAAGALMVID 167
Y + V+D
Sbjct: 72 YSNTDAVIYVVD 83
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+CLL + F + T+ + + V G++ L ++DTAGQE +
Sbjct: 25 GDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVT-VGGKQYLLGLYDTAGQEDY 79
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
GD VGK+ L+ +T + + T F ++ V G ++LQ+ DTAGQ+ F
Sbjct: 27 GDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA-VVSVDGRPVRLQLCDTAGQDEF 81
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 93 GDMGVGKSCLLHQF--TEQKFMPDCPHTIGVEFGTRIIEVHGEKIK---LQIWDTAGQER 147
G+ G GK+ LL Q T++ + T+G++ I++ ++ + L +WD AG+E
Sbjct: 9 GNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE 68
Query: 148 FRAVTRSYYRGAAGALMVIDVS 169
F + + A L V D+S
Sbjct: 69 FYSTHPHFXTQRALYLAVYDLS 90
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 93 GDMGVGKSCLLHQF--TEQKFMPDCPHTIGVEFGTRIIEVHGEKIK---LQIWDTAGQER 147
G+ G GK+ LL Q T++ + T+G++ I++ ++ + L +WD AG+E
Sbjct: 7 GNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE 66
Query: 148 FRAVTRSYYRGAAGALMVIDVS 169
F + + A L V D+S
Sbjct: 67 FYSTHPHFXTQRALYLAVYDLS 88
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 99 KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
KS L QF F+ TI +F + IEV L+I DTAG E+F ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 159 AAGALMV 165
G ++V
Sbjct: 75 GQGFILV 81
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G GVGKS L+ +F ++F+ + T+ + + + E + ++I DTAGQE +
Sbjct: 35 GRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQE--DTIQ 91
Query: 153 RS-YYRGAAGALMVIDVS 169
R + R G ++V D++
Sbjct: 92 REGHMRWGEGFVLVYDIT 109
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 123 FGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
G I + + ++D +GQ R+R + YY+ + VID S
Sbjct: 55 IGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSS 101
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
G GVGKS L+ +F + F T+ + ++I LQI DT G +F A+
Sbjct: 10 GAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQ 68
Query: 153 R-SYYRGAAGALM 164
R S +G A L+
Sbjct: 69 RLSISKGHAFILV 81
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 134 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
++ ++D G ++FR + +YY + V+D S
Sbjct: 62 RVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSS 97
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID 167
+ I ++WD GQ R R Y+ + V+D
Sbjct: 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVD 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,033,562
Number of Sequences: 62578
Number of extensions: 122571
Number of successful extensions: 859
Number of sequences better than 100.0: 330
Number of HSP's better than 100.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 484
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)