Query psy13826
Match_columns 173
No_of_seqs 311 out of 2335
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 21:27:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 1.1E-30 2.4E-35 182.9 9.9 94 80-173 3-96 (205)
2 KOG0094|consensus 99.9 1.1E-27 2.4E-32 167.6 10.2 89 85-173 21-109 (221)
3 KOG0080|consensus 99.9 3.4E-27 7.4E-32 160.3 11.1 93 81-173 6-98 (209)
4 KOG0092|consensus 99.9 1.8E-27 3.9E-32 166.2 8.7 89 85-173 4-92 (200)
5 KOG0078|consensus 99.9 3.3E-26 7.2E-31 162.4 10.5 93 81-173 7-99 (207)
6 KOG0098|consensus 99.9 4.1E-26 8.9E-31 158.6 9.3 91 83-173 3-93 (216)
7 KOG0086|consensus 99.9 3.4E-26 7.4E-31 154.4 7.3 94 80-173 3-96 (214)
8 KOG0095|consensus 99.9 1.6E-25 3.4E-30 150.7 10.1 93 81-173 2-94 (213)
9 KOG0079|consensus 99.9 2.3E-26 5.1E-31 154.3 5.8 92 82-173 4-95 (198)
10 KOG0087|consensus 99.9 7.8E-26 1.7E-30 160.1 8.7 95 79-173 7-101 (222)
11 KOG0394|consensus 99.9 1.2E-25 2.5E-30 156.0 6.9 91 83-173 6-96 (210)
12 KOG0093|consensus 99.9 1E-24 2.2E-29 146.3 8.9 95 79-173 14-108 (193)
13 cd04120 Rab12 Rab12 subfamily. 99.9 9.1E-24 2E-28 153.6 10.3 87 87-173 1-87 (202)
14 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.5E-23 3.2E-28 150.3 10.8 89 84-173 3-91 (182)
15 cd04131 Rnd Rnd subfamily. Th 99.9 2.6E-23 5.7E-28 148.6 10.9 86 87-173 2-87 (178)
16 cd04121 Rab40 Rab40 subfamily. 99.9 2.4E-23 5.3E-28 150.0 10.8 91 83-173 3-93 (189)
17 cd04133 Rop_like Rop subfamily 99.9 2.5E-23 5.5E-28 148.3 10.7 86 87-173 2-87 (176)
18 cd01875 RhoG RhoG subfamily. 99.9 2.7E-23 5.8E-28 150.1 10.4 87 86-173 3-89 (191)
19 KOG0091|consensus 99.9 2.7E-24 5.9E-29 146.6 4.5 92 82-173 4-96 (213)
20 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 4.9E-23 1.1E-27 152.4 11.4 89 84-173 11-99 (232)
21 cd04128 Spg1 Spg1p. Spg1p (se 99.9 5E-23 1.1E-27 147.6 10.3 87 87-173 1-87 (182)
22 KOG0088|consensus 99.9 3.2E-24 7E-29 145.6 3.5 93 81-173 8-100 (218)
23 cd04122 Rab14 Rab14 subfamily. 99.9 1.2E-22 2.6E-27 143.3 10.1 88 86-173 2-89 (166)
24 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.2E-22 2.7E-27 147.5 10.1 87 87-173 1-92 (202)
25 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.6E-22 3.5E-27 144.1 10.5 86 87-173 2-87 (175)
26 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 9.8E-23 2.1E-27 150.0 9.6 86 87-173 2-87 (222)
27 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 2.1E-22 4.5E-27 146.5 10.5 87 87-173 1-88 (201)
28 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 3.6E-22 7.7E-27 141.7 10.3 86 88-173 2-87 (170)
29 PLN03071 GTP-binding nuclear p 99.9 5E-22 1.1E-26 146.4 11.1 91 83-173 10-100 (219)
30 KOG0097|consensus 99.9 2E-22 4.3E-27 134.7 7.9 93 80-172 5-97 (215)
31 cd04119 RJL RJL (RabJ-Like) su 99.9 6.5E-22 1.4E-26 139.1 10.0 87 87-173 1-87 (168)
32 cd01867 Rab8_Rab10_Rab13_like 99.9 6.5E-22 1.4E-26 139.7 10.0 89 85-173 2-90 (167)
33 cd04117 Rab15 Rab15 subfamily. 99.9 1E-21 2.2E-26 138.1 10.4 87 87-173 1-87 (161)
34 cd01871 Rac1_like Rac1-like su 99.9 9.7E-22 2.1E-26 140.0 10.3 86 87-173 2-87 (174)
35 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.1E-21 2.5E-26 139.3 10.4 87 86-173 2-88 (172)
36 cd04136 Rap_like Rap-like subf 99.9 1E-21 2.2E-26 137.7 9.6 86 87-173 2-87 (163)
37 cd04110 Rab35 Rab35 subfamily. 99.9 1.5E-21 3.2E-26 141.9 10.7 90 84-173 4-93 (199)
38 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1.6E-21 3.6E-26 137.4 10.3 88 86-173 2-89 (166)
39 PLN03110 Rab GTPase; Provision 99.9 2.7E-21 6E-26 142.1 11.9 92 82-173 8-99 (216)
40 PLN00023 GTP-binding protein; 99.9 1.5E-21 3.2E-26 149.2 10.5 93 81-173 16-121 (334)
41 cd04176 Rap2 Rap2 subgroup. T 99.9 1.5E-21 3.3E-26 137.1 9.8 87 86-173 1-87 (163)
42 cd04116 Rab9 Rab9 subfamily. 99.9 2.4E-21 5.3E-26 137.0 11.0 90 84-173 3-92 (170)
43 cd01865 Rab3 Rab3 subfamily. 99.9 1.8E-21 4E-26 137.2 10.2 87 87-173 2-88 (165)
44 cd04127 Rab27A Rab27a subfamil 99.9 1.6E-21 3.6E-26 139.1 10.0 90 84-173 2-101 (180)
45 cd04109 Rab28 Rab28 subfamily. 99.9 1.5E-21 3.3E-26 143.4 10.0 87 87-173 1-88 (215)
46 cd04124 RabL2 RabL2 subfamily. 99.9 2.6E-21 5.7E-26 136.0 10.7 86 87-172 1-86 (161)
47 cd01892 Miro2 Miro2 subfamily. 99.9 2.4E-21 5.1E-26 137.3 10.3 90 84-173 2-92 (169)
48 cd00877 Ran Ran (Ras-related n 99.9 3.4E-21 7.4E-26 136.1 10.8 87 87-173 1-87 (166)
49 PF00071 Ras: Ras family; Int 99.9 1.5E-21 3.3E-26 136.9 8.9 86 88-173 1-86 (162)
50 cd01866 Rab2 Rab2 subfamily. 99.9 3.1E-21 6.7E-26 136.4 10.5 90 84-173 2-91 (168)
51 PTZ00369 Ras-like protein; Pro 99.9 2.3E-21 5E-26 139.7 9.8 88 85-173 4-91 (189)
52 cd04111 Rab39 Rab39 subfamily. 99.9 3.3E-21 7.1E-26 141.3 10.0 88 86-173 2-90 (211)
53 cd04175 Rap1 Rap1 subgroup. T 99.9 3.4E-21 7.3E-26 135.5 9.6 87 86-173 1-87 (164)
54 cd01864 Rab19 Rab19 subfamily. 99.9 5.1E-21 1.1E-25 134.8 10.2 89 85-173 2-90 (165)
55 cd04106 Rab23_lke Rab23-like s 99.9 5.1E-21 1.1E-25 134.1 10.0 87 87-173 1-89 (162)
56 cd04115 Rab33B_Rab33A Rab33B/R 99.9 7.1E-21 1.5E-25 134.8 10.7 88 86-173 2-90 (170)
57 cd04134 Rho3 Rho3 subfamily. 99.9 4.7E-21 1E-25 138.1 9.8 85 88-173 2-86 (189)
58 cd01868 Rab11_like Rab11-like. 99.9 5.9E-21 1.3E-25 134.3 10.1 89 85-173 2-90 (165)
59 cd04125 RabA_like RabA-like su 99.9 6.2E-21 1.3E-25 137.3 10.3 87 87-173 1-87 (188)
60 cd04132 Rho4_like Rho4-like su 99.8 6.5E-21 1.4E-25 136.9 10.1 86 87-173 1-87 (187)
61 cd04138 H_N_K_Ras_like H-Ras/N 99.8 7.5E-21 1.6E-25 132.9 9.8 86 86-172 1-86 (162)
62 cd04113 Rab4 Rab4 subfamily. 99.8 9.8E-21 2.1E-25 132.7 10.2 87 87-173 1-87 (161)
63 cd04118 Rab24 Rab24 subfamily. 99.8 1.2E-20 2.5E-25 136.3 10.7 87 87-173 1-88 (193)
64 cd04130 Wrch_1 Wrch-1 subfamil 99.8 1.3E-20 2.8E-25 133.9 10.1 86 87-173 1-86 (173)
65 cd04144 Ras2 Ras2 subfamily. 99.8 6.9E-21 1.5E-25 137.3 8.7 85 88-173 1-85 (190)
66 cd04143 Rhes_like Rhes_like su 99.8 7.7E-21 1.7E-25 142.2 9.1 86 87-173 1-86 (247)
67 smart00176 RAN Ran (Ras-relate 99.8 1E-20 2.2E-25 137.5 9.2 82 92-173 1-82 (200)
68 PLN03108 Rab family protein; P 99.8 2.2E-20 4.8E-25 136.8 10.6 90 84-173 4-93 (210)
69 cd01861 Rab6 Rab6 subfamily. 99.8 2.4E-20 5.1E-25 130.6 10.0 87 87-173 1-87 (161)
70 PLN03118 Rab family protein; P 99.8 4E-20 8.6E-25 135.5 11.1 92 81-173 9-100 (211)
71 cd01860 Rab5_related Rab5-rela 99.8 3.2E-20 6.9E-25 130.2 10.0 88 86-173 1-88 (163)
72 cd04112 Rab26 Rab26 subfamily. 99.8 2.8E-20 6.1E-25 134.2 9.9 87 87-173 1-88 (191)
73 KOG0393|consensus 99.8 4E-21 8.7E-26 136.8 5.2 88 85-173 3-91 (198)
74 smart00174 RHO Rho (Ras homolo 99.8 3.1E-20 6.8E-25 131.7 9.8 84 89-173 1-84 (174)
75 cd04101 RabL4 RabL4 (Rab-like4 99.8 3.7E-20 8E-25 130.1 9.8 87 87-173 1-90 (164)
76 smart00173 RAS Ras subfamily o 99.8 3E-20 6.4E-25 130.5 9.3 86 87-173 1-86 (164)
77 cd04140 ARHI_like ARHI subfami 99.8 4.5E-20 9.7E-25 130.1 10.0 86 87-173 2-87 (165)
78 KOG0081|consensus 99.8 4E-22 8.8E-27 135.5 -1.0 93 81-173 4-105 (219)
79 PRK03003 GTP-binding protein D 99.8 3.7E-19 8.1E-24 144.4 15.8 87 85-173 210-308 (472)
80 KOG0083|consensus 99.8 1.7E-21 3.6E-26 129.0 1.6 83 91-173 2-85 (192)
81 cd04145 M_R_Ras_like M-Ras/R-R 99.8 8.3E-20 1.8E-24 128.1 10.1 86 86-172 2-87 (164)
82 smart00175 RAB Rab subfamily o 99.8 9.6E-20 2.1E-24 127.7 10.1 87 87-173 1-87 (164)
83 cd01862 Rab7 Rab7 subfamily. 99.8 1E-19 2.3E-24 128.5 10.2 86 87-172 1-86 (172)
84 cd01863 Rab18 Rab18 subfamily. 99.8 1.1E-19 2.4E-24 127.3 10.0 87 87-173 1-87 (161)
85 cd04177 RSR1 RSR1 subgroup. R 99.8 1E-19 2.2E-24 128.6 9.8 86 87-173 2-87 (168)
86 cd04135 Tc10 TC10 subfamily. 99.8 1.7E-19 3.6E-24 128.0 10.2 86 87-173 1-86 (174)
87 cd04126 Rab20 Rab20 subfamily. 99.8 1.3E-19 2.7E-24 133.4 9.8 82 87-173 1-82 (220)
88 cd04142 RRP22 RRP22 subfamily. 99.8 1.3E-19 2.8E-24 131.6 9.7 87 87-173 1-95 (198)
89 cd01870 RhoA_like RhoA-like su 99.8 1.3E-19 2.8E-24 128.7 9.5 86 87-173 2-87 (175)
90 PTZ00132 GTP-binding nuclear p 99.8 2.2E-19 4.8E-24 131.9 10.8 91 82-172 5-95 (215)
91 PLN00223 ADP-ribosylation fact 99.8 9.7E-20 2.1E-24 130.5 7.5 84 85-173 16-99 (181)
92 cd04150 Arf1_5_like Arf1-Arf5- 99.8 1.4E-19 2.9E-24 127.1 8.0 82 87-173 1-82 (159)
93 cd04149 Arf6 Arf6 subfamily. 99.8 1.6E-19 3.4E-24 127.9 8.3 84 85-173 8-91 (168)
94 smart00177 ARF ARF-like small 99.8 1.6E-19 3.5E-24 128.6 8.4 84 85-173 12-95 (175)
95 cd04103 Centaurin_gamma Centau 99.8 5.1E-19 1.1E-23 124.1 10.0 80 87-173 1-80 (158)
96 cd01873 RhoBTB RhoBTB subfamil 99.8 4.2E-19 9.1E-24 128.6 9.8 86 86-173 2-102 (195)
97 cd04123 Rab21 Rab21 subfamily. 99.8 5.5E-19 1.2E-23 123.4 9.9 87 87-173 1-87 (162)
98 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 1.6E-19 3.5E-24 127.3 7.3 80 89-172 2-81 (164)
99 PTZ00133 ADP-ribosylation fact 99.8 2.6E-19 5.6E-24 128.4 8.2 83 86-173 17-99 (182)
100 cd04114 Rab30 Rab30 subfamily. 99.8 1.5E-18 3.3E-23 122.4 11.2 89 84-172 5-93 (169)
101 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 4.7E-19 1E-23 127.1 8.6 86 86-172 3-89 (183)
102 cd00157 Rho Rho (Ras homology) 99.8 1.5E-18 3.2E-23 122.5 10.5 86 87-173 1-86 (171)
103 COG1100 GTPase SAR1 and relate 99.8 1.4E-18 2.9E-23 127.7 10.3 87 86-172 5-91 (219)
104 cd04146 RERG_RasL11_like RERG/ 99.8 6.5E-19 1.4E-23 124.0 8.2 85 88-173 1-86 (165)
105 cd00154 Rab Rab family. Rab G 99.8 1.6E-18 3.4E-23 120.2 9.9 86 87-172 1-86 (159)
106 TIGR03594 GTPase_EngA ribosome 99.8 6.6E-18 1.4E-22 135.8 14.6 85 85-172 171-268 (429)
107 cd04148 RGK RGK subfamily. Th 99.8 1.3E-18 2.8E-23 128.4 9.4 85 87-173 1-87 (221)
108 KOG0395|consensus 99.8 8.5E-19 1.8E-23 126.7 7.1 88 85-173 2-89 (196)
109 cd04147 Ras_dva Ras-dva subfam 99.8 2E-18 4.4E-23 125.2 8.6 84 88-172 1-84 (198)
110 COG1160 Predicted GTPases [Gen 99.8 7.2E-18 1.6E-22 132.4 12.0 117 53-172 142-274 (444)
111 cd04139 RalA_RalB RalA/RalB su 99.8 4.1E-18 9E-23 119.3 9.2 85 87-172 1-85 (164)
112 cd04158 ARD1 ARD1 subfamily. 99.8 2.1E-18 4.6E-23 122.1 7.7 81 88-173 1-81 (169)
113 cd01893 Miro1 Miro1 subfamily. 99.8 4.2E-18 9.1E-23 120.1 9.0 85 87-173 1-85 (166)
114 cd04161 Arl2l1_Arl13_like Arl2 99.8 4.1E-18 8.9E-23 120.5 8.3 81 88-173 1-81 (167)
115 cd00876 Ras Ras family. The R 99.7 5.6E-18 1.2E-22 118.1 8.5 85 88-173 1-85 (160)
116 PF08477 Miro: Miro-like prote 99.7 3.2E-18 6.9E-23 114.2 6.9 86 88-173 1-88 (119)
117 PRK09518 bifunctional cytidyla 99.7 5E-17 1.1E-21 137.7 15.7 85 85-172 449-546 (712)
118 cd04157 Arl6 Arl6 subfamily. 99.7 3E-18 6.4E-23 120.0 6.8 81 88-172 1-82 (162)
119 KOG4252|consensus 99.7 6.5E-20 1.4E-24 127.1 -1.9 95 79-173 13-107 (246)
120 cd04154 Arl2 Arl2 subfamily. 99.7 6.4E-18 1.4E-22 120.0 7.9 84 84-172 12-95 (173)
121 cd04137 RheB Rheb (Ras Homolog 99.7 1.4E-17 3E-22 118.8 8.9 85 87-172 2-86 (180)
122 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1.4E-17 3E-22 118.5 8.1 82 86-172 15-96 (174)
123 PRK00093 GTP-binding protein D 99.7 2.1E-16 4.5E-21 127.4 14.5 85 85-172 172-269 (435)
124 cd04151 Arl1 Arl1 subfamily. 99.7 1.3E-17 2.7E-22 116.7 6.5 80 88-172 1-80 (158)
125 cd04129 Rho2 Rho2 subfamily. 99.7 6.7E-17 1.4E-21 116.3 10.3 86 87-173 2-87 (187)
126 cd04156 ARLTS1 ARLTS1 subfamil 99.7 3.1E-17 6.7E-22 114.7 8.2 81 88-172 1-81 (160)
127 cd00878 Arf_Arl Arf (ADP-ribos 99.7 4.1E-17 9E-22 113.9 7.6 80 88-172 1-80 (158)
128 KOG0073|consensus 99.7 5.1E-17 1.1E-21 111.1 7.0 85 83-172 13-97 (185)
129 cd04159 Arl10_like Arl10-like 99.7 8.7E-17 1.9E-21 111.5 8.2 81 88-172 1-81 (159)
130 smart00178 SAR Sar1p-like memb 99.7 8E-17 1.7E-21 115.6 8.2 84 84-172 15-98 (184)
131 PF00025 Arf: ADP-ribosylation 99.7 9.6E-17 2.1E-21 114.4 6.7 84 84-172 12-95 (175)
132 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.6E-16 3.6E-21 111.8 7.8 81 88-172 1-87 (167)
133 KOG0070|consensus 99.7 5.5E-17 1.2E-21 113.3 5.2 84 84-172 15-98 (181)
134 cd00879 Sar1 Sar1 subfamily. 99.7 3.6E-16 7.9E-21 112.4 8.1 83 85-172 18-100 (190)
135 cd01890 LepA LepA subfamily. 99.7 4.9E-16 1.1E-20 110.6 8.7 85 88-172 2-104 (179)
136 cd01891 TypA_BipA TypA (tyrosi 99.7 3.5E-16 7.6E-21 113.1 7.4 84 87-170 3-100 (194)
137 cd04171 SelB SelB subfamily. 99.6 1.1E-15 2.4E-20 106.9 8.6 82 88-170 2-86 (164)
138 TIGR00231 small_GTP small GTP- 99.6 2.2E-15 4.8E-20 104.0 10.0 86 86-171 1-86 (161)
139 TIGR02528 EutP ethanolamine ut 99.6 1.1E-15 2.4E-20 104.9 6.4 71 88-173 2-77 (142)
140 KOG1673|consensus 99.6 8.4E-16 1.8E-20 104.4 4.9 91 82-172 16-106 (205)
141 cd04155 Arl3 Arl3 subfamily. 99.6 4.2E-15 9.1E-20 105.2 8.1 83 85-172 13-95 (173)
142 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 1.1E-14 2.3E-19 102.5 9.1 84 88-171 2-86 (168)
143 KOG0075|consensus 99.6 1.2E-15 2.6E-20 102.8 3.7 85 85-173 19-103 (186)
144 cd04105 SR_beta Signal recogni 99.6 9.8E-15 2.1E-19 106.4 8.8 83 88-171 2-85 (203)
145 KOG0096|consensus 99.6 7.5E-15 1.6E-19 102.9 7.7 88 84-171 8-95 (216)
146 KOG0071|consensus 99.5 2.8E-14 6.1E-19 95.5 7.9 82 86-172 17-98 (180)
147 TIGR03598 GTPase_YsxC ribosome 99.5 1.1E-13 2.3E-18 98.9 9.0 89 80-171 12-113 (179)
148 KOG0074|consensus 99.5 1.8E-13 4E-18 91.7 8.4 84 84-171 15-98 (185)
149 cd01879 FeoB Ferrous iron tran 99.5 1.3E-13 2.9E-18 95.8 8.0 80 91-172 1-88 (158)
150 PRK00454 engB GTP-binding prot 99.5 1.8E-13 4E-18 98.7 9.0 90 79-171 17-119 (196)
151 TIGR00450 mnmE_trmE_thdF tRNA 99.5 3.3E-13 7.1E-18 108.7 11.1 90 81-173 198-297 (442)
152 cd01878 HflX HflX subfamily. 99.5 1.6E-13 3.6E-18 99.8 8.6 85 84-172 39-134 (204)
153 cd00882 Ras_like_GTPase Ras-li 99.5 1.3E-13 2.9E-18 94.0 7.4 81 91-172 1-82 (157)
154 PRK04213 GTP-binding protein; 99.5 1.2E-13 2.7E-18 100.2 6.7 80 85-170 8-102 (201)
155 PRK03003 GTP-binding protein D 99.5 1.8E-13 3.8E-18 111.4 8.3 85 86-172 38-131 (472)
156 cd01898 Obg Obg subfamily. Th 99.5 2.5E-13 5.4E-18 95.7 8.0 81 88-171 2-91 (170)
157 PTZ00099 rab6; Provisional 99.5 2.5E-13 5.5E-18 96.8 7.3 65 109-173 3-67 (176)
158 TIGR03156 GTP_HflX GTP-binding 99.4 3.5E-13 7.6E-18 105.6 8.3 84 85-172 188-282 (351)
159 cd00881 GTP_translation_factor 99.4 5.5E-13 1.2E-17 95.3 8.2 85 88-172 1-99 (189)
160 cd01897 NOG NOG1 is a nucleola 99.4 1.1E-12 2.3E-17 92.3 9.2 81 88-172 2-93 (168)
161 TIGR01393 lepA GTP-binding pro 99.4 7.6E-13 1.6E-17 110.1 9.5 86 86-171 3-106 (595)
162 cd04164 trmE TrmE (MnmE, ThdF, 99.4 1.3E-12 2.8E-17 90.5 8.8 84 87-173 2-95 (157)
163 PRK15494 era GTPase Era; Provi 99.4 8.8E-13 1.9E-17 103.1 8.6 84 84-170 50-143 (339)
164 TIGR00487 IF-2 translation ini 99.4 1.7E-12 3.7E-17 107.6 10.3 86 84-170 85-170 (587)
165 cd04167 Snu114p Snu114p subfam 99.4 1E-12 2.2E-17 96.4 8.0 85 88-172 2-108 (213)
166 KOG3883|consensus 99.4 9.6E-13 2.1E-17 89.4 7.0 89 85-173 8-99 (198)
167 PRK05291 trmE tRNA modificatio 99.4 2E-12 4.4E-17 104.5 10.1 86 85-173 214-309 (449)
168 PRK00093 GTP-binding protein D 99.4 2.7E-12 5.8E-17 103.6 9.5 82 87-171 2-93 (435)
169 KOG4423|consensus 99.4 1.5E-15 3.3E-20 106.1 -8.0 89 83-171 22-111 (229)
170 cd01889 SelB_euk SelB subfamil 99.4 1.4E-12 3.1E-17 94.1 6.7 85 87-171 1-104 (192)
171 KOG0084|consensus 99.4 6.2E-13 1.3E-17 93.9 4.6 86 10-95 4-91 (205)
172 PRK10218 GTP-binding protein; 99.3 7.6E-12 1.6E-16 104.0 9.9 85 86-170 5-103 (607)
173 cd01894 EngA1 EngA1 subfamily. 99.3 6.8E-12 1.5E-16 86.9 8.3 79 90-171 1-89 (157)
174 TIGR00436 era GTP-binding prot 99.3 7.7E-12 1.7E-16 95.0 8.9 82 88-172 2-93 (270)
175 CHL00189 infB translation init 99.3 5.5E-12 1.2E-16 106.4 8.6 89 83-171 241-331 (742)
176 KOG0076|consensus 99.3 1.6E-12 3.4E-17 90.1 4.2 84 85-172 16-106 (197)
177 PRK11058 GTPase HflX; Provisio 99.3 7.3E-12 1.6E-16 100.4 8.3 86 86-172 197-290 (426)
178 PRK05306 infB translation init 99.3 1.3E-11 2.9E-16 105.0 10.3 86 83-170 287-372 (787)
179 cd01895 EngA2 EngA2 subfamily. 99.3 1.6E-11 3.4E-16 86.3 9.1 85 86-172 2-98 (174)
180 cd04169 RF3 RF3 subfamily. Pe 99.3 1.1E-11 2.4E-16 93.9 8.7 85 87-171 3-107 (267)
181 cd01896 DRG The developmentall 99.3 1.8E-11 3.8E-16 91.1 9.6 82 88-172 2-91 (233)
182 TIGR00491 aIF-2 translation in 99.3 6.7E-12 1.5E-16 104.0 8.1 84 87-170 5-104 (590)
183 cd01850 CDC_Septin CDC/Septin. 99.3 2.6E-11 5.7E-16 92.3 10.7 61 85-145 3-73 (276)
184 TIGR00475 selB selenocysteine- 99.3 1.1E-11 2.3E-16 103.1 9.2 82 87-170 1-85 (581)
185 cd04168 TetM_like Tet(M)-like 99.3 6.5E-12 1.4E-16 93.6 7.0 84 88-171 1-100 (237)
186 TIGR03594 GTPase_EngA ribosome 99.3 5.7E-12 1.2E-16 101.5 7.2 81 88-171 1-91 (429)
187 PRK15467 ethanolamine utilizat 99.3 6.8E-12 1.5E-16 87.9 5.9 72 88-173 3-79 (158)
188 cd04163 Era Era subfamily. Er 99.3 3.8E-11 8.3E-16 83.5 9.0 83 86-171 3-95 (168)
189 PRK09518 bifunctional cytidyla 99.3 2.4E-11 5.1E-16 103.4 8.8 84 86-170 275-366 (712)
190 cd01881 Obg_like The Obg-like 99.2 2.1E-11 4.7E-16 86.1 7.0 78 91-171 1-87 (176)
191 cd01899 Ygr210 Ygr210 subfamil 99.2 4E-11 8.7E-16 92.7 8.5 82 89-170 1-111 (318)
192 cd01876 YihA_EngB The YihA (En 99.2 4.3E-11 9.2E-16 83.6 7.9 81 88-171 1-94 (170)
193 KOG0080|consensus 99.2 7.9E-12 1.7E-16 85.7 3.8 86 10-95 6-93 (209)
194 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 2.6E-11 5.6E-16 89.7 6.5 80 88-171 1-89 (232)
195 cd04166 CysN_ATPS CysN_ATPS su 99.2 2.1E-11 4.6E-16 89.1 5.9 84 88-171 1-113 (208)
196 PF02421 FeoB_N: Ferrous iron 99.2 4.7E-11 1E-15 83.1 7.1 83 87-171 1-91 (156)
197 PRK05433 GTP-binding protein L 99.2 6.3E-11 1.4E-15 98.8 8.7 87 85-171 6-110 (600)
198 PRK04004 translation initiatio 99.2 8.7E-11 1.9E-15 97.7 9.3 85 86-170 6-106 (586)
199 TIGR00483 EF-1_alpha translati 99.2 8.3E-11 1.8E-15 94.7 8.9 89 84-172 5-122 (426)
200 cd04170 EF-G_bact Elongation f 99.2 6.2E-11 1.4E-15 89.9 7.5 84 88-171 1-100 (268)
201 PRK12299 obgE GTPase CgtA; Rev 99.2 1.2E-10 2.7E-15 90.7 9.1 84 86-172 158-250 (335)
202 PF01926 MMR_HSR1: 50S ribosom 99.2 2E-10 4.3E-15 76.2 8.8 79 88-170 1-91 (116)
203 KOG0072|consensus 99.2 8.6E-12 1.9E-16 84.0 2.1 83 85-172 17-99 (182)
204 PRK09554 feoB ferrous iron tra 99.2 1.5E-10 3.2E-15 98.9 10.0 85 86-172 3-99 (772)
205 PRK00089 era GTPase Era; Revie 99.2 1.4E-10 3E-15 89.0 8.5 82 86-170 5-96 (292)
206 cd00880 Era_like Era (E. coli 99.2 1.6E-10 3.5E-15 79.5 8.1 81 91-172 1-89 (163)
207 PRK12317 elongation factor 1-a 99.2 1.2E-10 2.6E-15 93.8 8.2 86 85-170 5-119 (425)
208 cd01885 EF2 EF2 (for archaea a 99.2 1.2E-10 2.7E-15 85.8 7.2 84 88-171 2-109 (222)
209 TIGR02729 Obg_CgtA Obg family 99.2 2.2E-10 4.7E-15 89.2 8.8 83 86-171 157-248 (329)
210 KOG0095|consensus 99.1 4E-11 8.7E-16 81.3 3.8 88 11-98 3-92 (213)
211 TIGR01394 TypA_BipA GTP-bindin 99.1 1.4E-10 3.1E-15 96.5 7.7 83 88-170 3-99 (594)
212 KOG0094|consensus 99.1 8.1E-11 1.7E-15 83.2 5.2 60 12-71 19-80 (221)
213 TIGR00437 feoB ferrous iron tr 99.1 3.6E-10 7.8E-15 94.2 9.5 78 93-172 1-86 (591)
214 COG2229 Predicted GTPase [Gene 99.1 4.7E-10 1E-14 78.7 8.2 87 83-172 7-105 (187)
215 KOG0092|consensus 99.1 7.3E-11 1.6E-15 83.2 4.0 58 14-71 4-61 (200)
216 TIGR00503 prfC peptide chain r 99.1 4.1E-10 8.8E-15 92.7 8.9 87 84-170 9-115 (527)
217 cd01888 eIF2_gamma eIF2-gamma 99.1 3.4E-10 7.3E-15 82.5 7.6 85 87-171 1-119 (203)
218 COG0486 ThdF Predicted GTPase 99.1 3.6E-10 7.8E-15 89.7 8.2 88 81-171 212-309 (454)
219 PRK13351 elongation factor G; 99.1 2.8E-10 6.1E-15 96.7 7.9 88 84-171 6-109 (687)
220 cd04104 p47_IIGP_like p47 (47- 99.1 3.9E-10 8.4E-15 81.8 7.4 82 86-167 1-89 (197)
221 KOG0078|consensus 99.1 2.3E-11 5E-16 87.0 0.9 85 11-101 8-100 (207)
222 PRK00741 prfC peptide chain re 99.1 2.6E-10 5.5E-15 93.8 7.0 87 84-170 8-114 (526)
223 PRK09602 translation-associate 99.1 7.6E-10 1.7E-14 88.1 9.5 83 87-169 2-113 (396)
224 PRK12297 obgE GTPase CgtA; Rev 99.1 9.3E-10 2E-14 88.1 9.5 82 87-171 159-249 (424)
225 cd01886 EF-G Elongation factor 99.1 4.9E-10 1.1E-14 85.0 7.2 83 88-170 1-99 (270)
226 KOG0087|consensus 99.1 1.7E-10 3.7E-15 82.5 4.2 56 10-65 9-64 (222)
227 PRK12296 obgE GTPase CgtA; Rev 99.1 1E-09 2.2E-14 89.2 9.0 83 86-171 159-249 (500)
228 TIGR00490 aEF-2 translation el 99.0 5.8E-10 1.3E-14 95.1 7.9 87 84-170 17-121 (720)
229 KOG1423|consensus 99.0 2.9E-09 6.2E-14 80.5 9.0 91 80-171 66-168 (379)
230 KOG1707|consensus 99.0 6E-10 1.3E-14 90.2 5.8 88 84-173 7-94 (625)
231 COG3596 Predicted GTPase [Gene 99.0 5.7E-10 1.2E-14 83.2 5.0 91 80-172 33-131 (296)
232 COG0218 Predicted GTPase [Gene 99.0 1.9E-09 4.1E-14 77.1 7.4 89 79-170 17-118 (200)
233 COG1159 Era GTPase [General fu 99.0 1.1E-09 2.5E-14 82.4 6.4 82 86-170 6-97 (298)
234 PRK12735 elongation factor Tu; 99.0 2.6E-09 5.7E-14 85.3 8.7 88 83-170 9-110 (396)
235 cd01852 AIG1 AIG1 (avrRpt2-ind 99.0 1.6E-09 3.5E-14 78.4 6.8 80 87-170 1-95 (196)
236 cd01884 EF_Tu EF-Tu subfamily. 99.0 2.6E-09 5.5E-14 77.4 7.8 85 86-170 2-100 (195)
237 KOG0394|consensus 99.0 9.5E-10 2E-14 77.2 5.1 88 13-100 7-96 (210)
238 TIGR00485 EF-Tu translation el 99.0 2.3E-09 5E-14 85.6 8.0 87 84-170 10-110 (394)
239 TIGR00991 3a0901s02IAP34 GTP-b 99.0 4.7E-09 1E-13 80.4 9.1 83 84-169 36-129 (313)
240 cd01883 EF1_alpha Eukaryotic e 99.0 1.5E-09 3.2E-14 80.1 6.1 84 88-171 1-113 (219)
241 PRK10512 selenocysteinyl-tRNA- 99.0 4.1E-09 8.9E-14 88.2 9.1 82 88-170 2-86 (614)
242 COG1160 Predicted GTPases [Gen 98.9 8.6E-10 1.9E-14 87.3 4.7 81 87-170 4-95 (444)
243 PF00009 GTP_EFTU: Elongation 98.9 4.8E-10 1E-14 80.7 2.9 85 86-170 3-105 (188)
244 TIGR00484 EF-G translation elo 98.9 4E-09 8.6E-14 89.7 7.9 88 84-171 8-111 (689)
245 PF09439 SRPRB: Signal recogni 98.9 6.7E-10 1.5E-14 79.0 2.7 79 88-170 5-87 (181)
246 smart00010 small_GTPase Small 98.9 1.8E-09 3.9E-14 71.9 4.6 34 87-120 1-35 (124)
247 PF10662 PduV-EutP: Ethanolami 98.9 5.6E-09 1.2E-13 71.4 6.9 72 88-173 3-78 (143)
248 PLN03126 Elongation factor Tu; 98.9 7.2E-09 1.6E-13 84.4 8.6 88 83-170 78-179 (478)
249 PRK12736 elongation factor Tu; 98.9 6.5E-09 1.4E-13 83.0 8.1 87 84-170 10-110 (394)
250 cd01853 Toc34_like Toc34-like 98.9 1.4E-08 3E-13 76.2 9.0 88 79-170 24-126 (249)
251 KOG0077|consensus 98.9 1.9E-09 4.1E-14 74.5 3.9 85 83-172 17-101 (193)
252 PRK12298 obgE GTPase CgtA; Rev 98.9 1.1E-08 2.3E-13 81.5 8.7 81 87-169 160-248 (390)
253 KOG0098|consensus 98.9 1.7E-09 3.7E-14 76.1 3.3 41 12-52 3-43 (216)
254 TIGR03680 eif2g_arch translati 98.9 5.9E-09 1.3E-13 83.6 6.8 86 84-170 2-115 (406)
255 CHL00071 tufA elongation facto 98.9 1.7E-08 3.6E-13 81.0 9.2 88 83-170 9-110 (409)
256 KOG1191|consensus 98.8 7.9E-09 1.7E-13 82.4 6.9 86 82-168 264-358 (531)
257 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 7.7E-09 1.7E-13 71.0 6.0 54 88-145 85-138 (141)
258 KOG0079|consensus 98.8 7E-10 1.5E-14 75.2 0.7 90 11-100 4-95 (198)
259 cd01859 MJ1464 MJ1464. This f 98.8 2.3E-08 4.9E-13 69.7 8.0 81 55-144 75-155 (156)
260 PRK04000 translation initiatio 98.8 1.1E-08 2.5E-13 82.0 6.8 88 83-171 6-121 (411)
261 KOG0086|consensus 98.8 2.6E-09 5.6E-14 72.9 2.4 45 11-55 5-49 (214)
262 PRK05124 cysN sulfate adenylyl 98.8 2.7E-08 5.8E-13 81.2 8.7 87 84-170 25-142 (474)
263 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.8 1.1E-08 2.4E-13 73.3 5.6 41 13-53 3-43 (182)
264 KOG0088|consensus 98.8 2.9E-09 6.2E-14 73.1 2.1 45 9-53 7-51 (218)
265 PRK00049 elongation factor Tu; 98.8 4E-08 8.6E-13 78.6 8.8 87 84-170 10-110 (396)
266 TIGR02034 CysN sulfate adenyly 98.8 2.5E-08 5.3E-13 80.0 7.6 84 87-170 1-115 (406)
267 PTZ00258 GTP-binding protein; 98.8 4.9E-08 1.1E-12 77.3 8.8 86 84-169 19-126 (390)
268 PF04548 AIG1: AIG1 family; I 98.8 1.9E-08 4.1E-13 73.8 6.1 79 87-169 1-94 (212)
269 cd01856 YlqF YlqF. Proteins o 98.8 4.4E-08 9.6E-13 69.4 7.7 87 55-145 80-170 (171)
270 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.8 1.9E-08 4.1E-13 74.7 6.0 42 12-53 10-51 (232)
271 PRK05506 bifunctional sulfate 98.7 3.7E-08 8E-13 83.1 8.0 87 84-170 22-139 (632)
272 cd01900 YchF YchF subfamily. 98.7 3.5E-08 7.6E-13 74.9 7.1 81 89-169 1-103 (274)
273 cd04128 Spg1 Spg1p. Spg1p (se 98.7 1.1E-08 2.4E-13 73.3 4.1 37 16-52 1-37 (182)
274 cd04121 Rab40 Rab40 subfamily. 98.7 1.5E-08 3.3E-13 73.1 4.6 41 12-52 3-43 (189)
275 PRK12739 elongation factor G; 98.7 2.9E-08 6.3E-13 84.5 6.9 87 84-170 6-108 (691)
276 PRK09601 GTP-binding protein Y 98.7 1.2E-07 2.5E-12 74.5 9.6 81 87-169 3-107 (364)
277 cd04131 Rnd Rnd subfamily. Th 98.7 2.3E-08 4.9E-13 71.4 5.2 38 16-53 2-39 (178)
278 cd04133 Rop_like Rop subfamily 98.7 2.3E-08 4.9E-13 71.3 5.2 38 16-53 2-39 (176)
279 COG1163 DRG Predicted GTPase [ 98.7 6.8E-08 1.5E-12 73.7 7.4 84 86-172 63-154 (365)
280 cd01892 Miro2 Miro2 subfamily. 98.7 2.3E-08 5.1E-13 70.6 4.5 39 14-52 3-42 (169)
281 cd01875 RhoG RhoG subfamily. 98.7 3.4E-08 7.3E-13 71.2 5.3 38 16-53 4-41 (191)
282 KOG1707|consensus 98.7 8.2E-08 1.8E-12 78.0 7.9 94 78-173 417-510 (625)
283 COG0370 FeoB Fe2+ transport sy 98.7 1.2E-07 2.6E-12 78.6 8.6 85 86-172 3-95 (653)
284 cd01874 Cdc42 Cdc42 subfamily. 98.7 3.8E-08 8.3E-13 70.0 5.1 38 16-53 2-39 (175)
285 KOG0081|consensus 98.6 2E-09 4.4E-14 73.8 -1.8 47 10-56 4-52 (219)
286 cd01855 YqeH YqeH. YqeH is an 98.6 1.2E-07 2.7E-12 68.2 7.1 78 56-144 105-189 (190)
287 PLN03110 Rab GTPase; Provision 98.6 5.4E-08 1.2E-12 71.6 5.4 42 11-52 8-49 (216)
288 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.6 4.8E-08 1E-12 72.1 5.0 37 16-52 2-38 (222)
289 cd04108 Rab36_Rab34 Rab34/Rab3 98.6 4.2E-08 9.1E-13 69.4 4.2 36 17-52 2-37 (170)
290 cd04127 Rab27A Rab27a subfamil 98.6 6.4E-08 1.4E-12 68.7 5.1 40 13-52 2-41 (180)
291 cd04165 GTPBP1_like GTPBP1-lik 98.6 1.9E-07 4.2E-12 69.0 7.6 82 88-171 1-122 (224)
292 PLN00043 elongation factor 1-a 98.6 2.5E-07 5.4E-12 75.0 8.8 86 85-170 6-120 (447)
293 cd04110 Rab35 Rab35 subfamily. 98.6 5.3E-08 1.2E-12 70.6 4.5 41 12-52 3-43 (199)
294 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.6 7.6E-08 1.7E-12 68.2 5.2 39 15-53 2-40 (172)
295 cd04102 RabL3 RabL3 (Rab-like3 98.6 4E-08 8.6E-13 71.6 3.8 37 16-52 1-37 (202)
296 cd01867 Rab8_Rab10_Rab13_like 98.6 5.1E-08 1.1E-12 68.5 4.2 39 14-52 2-40 (167)
297 cd04122 Rab14 Rab14 subfamily. 98.6 5E-08 1.1E-12 68.5 4.1 38 15-52 2-39 (166)
298 PLN03127 Elongation factor Tu; 98.6 2.7E-07 5.9E-12 74.8 8.8 89 82-170 57-159 (447)
299 cd01858 NGP_1 NGP-1. Autoanti 98.6 3.1E-07 6.8E-12 64.1 8.1 82 56-144 75-156 (157)
300 PTZ00141 elongation factor 1- 98.6 3E-07 6.4E-12 74.6 8.9 87 84-170 5-120 (446)
301 cd04120 Rab12 Rab12 subfamily. 98.6 5.1E-08 1.1E-12 71.0 4.0 37 16-52 1-37 (202)
302 cd04138 H_N_K_Ras_like H-Ras/N 98.6 9.6E-08 2.1E-12 66.3 5.2 37 16-52 2-38 (162)
303 COG1084 Predicted GTPase [Gene 98.6 3.1E-07 6.7E-12 70.2 8.1 84 85-170 167-259 (346)
304 PLN03071 GTP-binding nuclear p 98.6 9.1E-08 2E-12 70.5 5.1 41 13-53 11-51 (219)
305 KOG0091|consensus 98.6 1.7E-08 3.6E-13 69.7 0.9 41 12-52 5-45 (213)
306 PRK00007 elongation factor G; 98.6 1.9E-07 4E-12 79.7 7.3 87 84-170 8-110 (693)
307 cd04136 Rap_like Rap-like subf 98.6 1E-07 2.2E-12 66.4 4.8 37 16-52 2-38 (163)
308 KOG0097|consensus 98.6 5.4E-08 1.2E-12 65.6 3.1 47 10-56 6-52 (215)
309 PF00735 Septin: Septin; Inte 98.6 5.2E-07 1.1E-11 68.9 8.8 60 85-144 3-72 (281)
310 cd04117 Rab15 Rab15 subfamily. 98.6 7.9E-08 1.7E-12 67.3 4.0 37 16-52 1-37 (161)
311 TIGR00993 3a0901s04IAP86 chlor 98.6 5.6E-07 1.2E-11 75.0 9.4 87 79-169 111-212 (763)
312 PF00071 Ras: Ras family; Int 98.5 9.8E-08 2.1E-12 66.5 4.4 36 17-52 1-36 (162)
313 cd04119 RJL RJL (RabJ-Like) su 98.5 8.4E-08 1.8E-12 67.0 4.0 37 16-52 1-37 (168)
314 cd04107 Rab32_Rab38 Rab38/Rab3 98.5 8.2E-08 1.8E-12 69.7 4.1 37 16-52 1-37 (201)
315 TIGR03596 GTPase_YlqF ribosome 98.5 3.7E-07 8.1E-12 69.6 7.4 58 84-145 116-173 (276)
316 cd01871 Rac1_like Rac1-like su 98.5 1.5E-07 3.2E-12 66.9 4.8 37 16-52 2-38 (174)
317 KOG0093|consensus 98.5 1.2E-07 2.6E-12 64.4 3.9 46 8-53 14-59 (193)
318 PRK09563 rbgA GTPase YlqF; Rev 98.5 4.9E-07 1.1E-11 69.3 7.8 58 84-145 119-176 (287)
319 KOG3886|consensus 98.5 3.9E-08 8.5E-13 71.7 1.6 83 87-172 5-95 (295)
320 KOG4252|consensus 98.5 1.3E-08 2.8E-13 71.3 -0.9 70 11-86 16-85 (246)
321 PRK12740 elongation factor G; 98.5 2.4E-07 5.1E-12 78.8 6.4 80 92-171 1-96 (668)
322 cd04103 Centaurin_gamma Centau 98.5 2E-07 4.4E-12 65.2 5.0 36 16-51 1-36 (158)
323 PTZ00369 Ras-like protein; Pro 98.5 2E-07 4.3E-12 67.0 5.0 39 15-53 5-43 (189)
324 cd04178 Nucleostemin_like Nucl 98.5 4.5E-07 9.7E-12 64.4 6.5 57 84-144 115-171 (172)
325 cd00877 Ran Ran (Ras-related n 98.5 1.5E-07 3.2E-12 66.3 4.0 38 16-53 1-38 (166)
326 cd04140 ARHI_like ARHI subfami 98.5 2.5E-07 5.3E-12 64.9 5.1 37 16-52 2-38 (165)
327 cd04175 Rap1 Rap1 subgroup. T 98.5 2.4E-07 5.1E-12 64.8 4.7 37 16-52 2-38 (164)
328 cd04109 Rab28 Rab28 subfamily. 98.5 2.4E-07 5.2E-12 68.0 5.0 37 16-52 1-37 (215)
329 PLN00023 GTP-binding protein; 98.5 1.5E-07 3.3E-12 72.7 4.0 41 12-52 18-58 (334)
330 cd01864 Rab19 Rab19 subfamily. 98.5 3.3E-07 7E-12 64.2 5.4 37 14-50 2-38 (165)
331 cd04142 RRP22 RRP22 subfamily. 98.5 1.1E-07 2.4E-12 69.0 3.1 34 16-49 1-34 (198)
332 cd04111 Rab39 Rab39 subfamily. 98.5 2.4E-07 5.2E-12 67.9 4.9 38 15-52 2-39 (211)
333 PTZ00132 GTP-binding nuclear p 98.5 3.1E-07 6.7E-12 67.4 5.4 39 14-52 8-46 (215)
334 cd01866 Rab2 Rab2 subfamily. 98.5 3.4E-07 7.5E-12 64.4 5.4 39 13-51 2-40 (168)
335 cd04134 Rho3 Rho3 subfamily. 98.5 2.3E-07 5E-12 66.7 4.6 37 17-53 2-38 (189)
336 cd01865 Rab3 Rab3 subfamily. 98.5 2E-07 4.4E-12 65.3 4.2 36 16-51 2-37 (165)
337 PLN03108 Rab family protein; P 98.5 2.3E-07 5E-12 67.9 4.5 40 13-52 4-43 (210)
338 PF05049 IIGP: Interferon-indu 98.5 2E-07 4.3E-12 73.3 4.3 83 84-167 33-123 (376)
339 KOG0090|consensus 98.5 2.2E-07 4.8E-12 67.0 4.1 77 88-169 40-119 (238)
340 cd00066 G-alpha G protein alph 98.4 1.1E-06 2.3E-11 68.4 8.2 39 133-171 159-197 (317)
341 cd04116 Rab9 Rab9 subfamily. 98.4 3.3E-07 7.1E-12 64.5 4.9 39 14-52 4-42 (170)
342 cd04124 RabL2 RabL2 subfamily. 98.4 2.3E-07 4.9E-12 64.9 4.0 35 16-50 1-35 (161)
343 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.4 2.6E-07 5.7E-12 64.7 4.3 37 15-51 2-38 (166)
344 cd04132 Rho4_like Rho4-like su 98.4 2.2E-07 4.8E-12 66.4 4.0 40 16-55 1-40 (187)
345 PF00350 Dynamin_N: Dynamin fa 98.4 8.1E-07 1.7E-11 62.4 6.8 36 136-171 102-141 (168)
346 cd04176 Rap2 Rap2 subgroup. T 98.4 3.7E-07 8E-12 63.7 4.9 35 16-50 2-36 (163)
347 cd04118 Rab24 Rab24 subfamily. 98.4 2.4E-07 5.2E-12 66.6 4.0 37 16-52 1-38 (193)
348 cd01868 Rab11_like Rab11-like. 98.4 3.2E-07 6.9E-12 64.2 4.3 39 14-52 2-40 (165)
349 cd04106 Rab23_lke Rab23-like s 98.4 3.4E-07 7.3E-12 63.7 4.4 37 16-52 1-37 (162)
350 cd01870 RhoA_like RhoA-like su 98.4 4.1E-07 8.9E-12 64.2 4.8 37 16-52 2-38 (175)
351 cd04143 Rhes_like Rhes_like su 98.4 3.3E-07 7.2E-12 68.8 4.4 35 16-50 1-35 (247)
352 cd04115 Rab33B_Rab33A Rab33B/R 98.4 3.4E-07 7.5E-12 64.5 4.2 38 15-52 2-39 (170)
353 smart00173 RAS Ras subfamily o 98.4 4.5E-07 9.8E-12 63.3 4.5 36 16-51 1-36 (164)
354 COG1100 GTPase SAR1 and relate 98.4 3.9E-07 8.5E-12 66.7 4.4 40 16-55 6-45 (219)
355 PLN00116 translation elongatio 98.4 7E-07 1.5E-11 77.6 6.5 88 83-170 16-133 (843)
356 cd04125 RabA_like RabA-like su 98.4 5.4E-07 1.2E-11 64.6 4.9 37 16-52 1-37 (188)
357 cd04135 Tc10 TC10 subfamily. 98.4 5.9E-07 1.3E-11 63.3 4.9 37 16-52 1-37 (174)
358 KOG0395|consensus 98.4 2.6E-07 5.7E-12 66.9 2.9 44 15-58 3-46 (196)
359 PTZ00416 elongation factor 2; 98.4 1.5E-06 3.4E-11 75.4 7.9 87 84-170 17-127 (836)
360 cd04144 Ras2 Ras2 subfamily. 98.4 4.2E-07 9.1E-12 65.4 3.8 36 17-52 1-36 (190)
361 cd04130 Wrch_1 Wrch-1 subfamil 98.4 7.2E-07 1.6E-11 63.0 4.9 35 16-50 1-35 (173)
362 cd04145 M_R_Ras_like M-Ras/R-R 98.3 8.5E-07 1.8E-11 61.8 5.1 38 15-52 2-39 (164)
363 COG1161 Predicted GTPases [Gen 98.3 1.1E-06 2.5E-11 68.3 6.2 57 85-145 131-187 (322)
364 cd04101 RabL4 RabL4 (Rab-like4 98.3 6.8E-07 1.5E-11 62.4 4.4 37 16-52 1-39 (164)
365 cd04177 RSR1 RSR1 subgroup. R 98.3 8.1E-07 1.8E-11 62.4 4.6 37 16-52 2-38 (168)
366 PRK07560 elongation factor EF- 98.3 2.5E-06 5.4E-11 73.3 8.2 87 84-170 18-122 (731)
367 cd04113 Rab4 Rab4 subfamily. 98.3 6.9E-07 1.5E-11 62.2 3.9 36 16-51 1-36 (161)
368 PF05783 DLIC: Dynein light in 98.3 3.3E-06 7.2E-11 68.6 8.1 85 84-171 23-113 (472)
369 cd04162 Arl9_Arfrp2_like Arl9/ 98.3 9E-07 1.9E-11 62.2 4.0 35 18-52 2-36 (164)
370 cd04139 RalA_RalB RalA/RalB su 98.3 1.1E-06 2.3E-11 61.2 4.2 37 16-52 1-37 (164)
371 KOG0393|consensus 98.3 3.9E-07 8.4E-12 65.5 1.9 38 14-51 3-40 (198)
372 smart00010 small_GTPase Small 98.3 6.3E-07 1.4E-11 59.5 2.8 34 16-49 1-35 (124)
373 cd01860 Rab5_related Rab5-rela 98.3 1.1E-06 2.4E-11 61.2 4.1 37 16-52 2-38 (163)
374 cd04146 RERG_RasL11_like RERG/ 98.3 8.1E-07 1.8E-11 62.2 3.4 33 17-49 1-33 (165)
375 cd04148 RGK RGK subfamily. Th 98.3 8.1E-07 1.7E-11 65.6 3.5 34 16-49 1-35 (221)
376 cd04114 Rab30 Rab30 subfamily. 98.3 2.7E-06 5.9E-11 59.6 5.9 38 13-50 5-42 (169)
377 COG5256 TEF1 Translation elong 98.2 5.5E-06 1.2E-10 65.3 7.8 88 85-172 6-122 (428)
378 cd04112 Rab26 Rab26 subfamily. 98.2 1.2E-06 2.6E-11 63.1 3.8 37 16-52 1-38 (191)
379 cd01862 Rab7 Rab7 subfamily. 98.2 2.1E-06 4.5E-11 60.3 5.0 36 16-51 1-36 (172)
380 cd04150 Arf1_5_like Arf1-Arf5- 98.2 1.5E-06 3.3E-11 60.7 4.1 36 16-52 1-36 (159)
381 cd01893 Miro1 Miro1 subfamily. 98.2 2.1E-06 4.6E-11 60.2 4.6 33 16-48 1-33 (166)
382 PTZ00133 ADP-ribosylation fact 98.2 1.7E-06 3.7E-11 61.9 4.2 37 15-52 17-53 (182)
383 cd04126 Rab20 Rab20 subfamily. 98.2 1.9E-06 4.1E-11 63.6 4.5 36 16-52 1-36 (220)
384 TIGR02528 EutP ethanolamine ut 98.2 1.4E-06 3.1E-11 59.4 3.5 32 17-50 2-33 (142)
385 smart00177 ARF ARF-like small 98.2 1.9E-06 4.2E-11 61.2 4.2 37 15-52 13-49 (175)
386 TIGR00092 GTP-binding protein 98.2 1E-05 2.3E-10 63.7 8.5 82 87-170 3-109 (368)
387 cd01861 Rab6 Rab6 subfamily. 98.2 2.6E-06 5.6E-11 59.2 4.6 35 16-50 1-35 (161)
388 smart00175 RAB Rab subfamily o 98.2 3.2E-06 6.9E-11 58.8 4.9 36 16-51 1-36 (164)
389 smart00174 RHO Rho (Ras homolo 98.2 2E-06 4.3E-11 60.6 3.9 35 18-52 1-35 (174)
390 cd00157 Rho Rho (Ras homology) 98.2 3.2E-06 7E-11 59.2 4.8 35 16-50 1-35 (171)
391 PLN00223 ADP-ribosylation fact 98.2 2.6E-06 5.7E-11 60.9 4.3 37 15-52 17-53 (181)
392 cd01882 BMS1 Bms1. Bms1 is an 98.2 1E-05 2.3E-10 59.9 7.5 79 84-170 37-115 (225)
393 COG0532 InfB Translation initi 98.2 9.3E-06 2E-10 65.8 7.7 84 87-170 6-90 (509)
394 cd04137 RheB Rheb (Ras Homolog 98.1 3.4E-06 7.4E-11 59.8 4.6 35 16-50 2-36 (180)
395 cd01873 RhoBTB RhoBTB subfamil 98.1 1.7E-06 3.7E-11 62.7 3.1 35 15-49 2-42 (195)
396 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.1 3.3E-06 7.1E-11 60.4 4.3 37 15-52 3-39 (183)
397 cd04158 ARD1 ARD1 subfamily. 98.1 2.9E-06 6.3E-11 59.8 4.0 35 17-52 1-35 (169)
398 PLN03118 Rab family protein; P 98.1 3.7E-06 8.1E-11 61.5 4.5 39 11-50 10-48 (211)
399 PF03193 DUF258: Protein of un 98.1 3.4E-06 7.3E-11 59.0 4.0 58 88-148 37-100 (161)
400 cd04123 Rab21 Rab21 subfamily. 98.1 4.6E-06 9.9E-11 57.7 4.7 35 16-50 1-35 (162)
401 cd04129 Rho2 Rho2 subfamily. 98.1 4.2E-06 9.2E-11 60.0 4.6 37 16-52 2-38 (187)
402 cd00154 Rab Rab family. Rab G 98.1 4.4E-06 9.5E-11 57.3 4.6 37 16-52 1-37 (159)
403 cd04149 Arf6 Arf6 subfamily. 98.1 3.4E-06 7.3E-11 59.5 4.0 37 15-52 9-45 (168)
404 cd01863 Rab18 Rab18 subfamily. 98.1 3E-06 6.5E-11 58.9 3.7 36 16-51 1-36 (161)
405 cd04159 Arl10_like Arl10-like 98.1 4.5E-06 9.6E-11 57.4 4.0 36 18-53 2-37 (159)
406 cd01849 YlqF_related_GTPase Yl 98.1 1.4E-05 3.1E-10 55.6 6.5 56 85-144 99-154 (155)
407 PRK13796 GTPase YqeH; Provisio 98.1 1.4E-05 3.1E-10 63.3 7.2 80 55-146 138-221 (365)
408 COG0012 Predicted GTPase, prob 98.1 2.2E-05 4.8E-10 61.4 8.0 85 87-171 3-110 (372)
409 cd04147 Ras_dva Ras-dva subfam 98.1 4.1E-06 8.8E-11 60.7 3.7 33 17-49 1-33 (198)
410 PF08477 Miro: Miro-like prote 98.1 3.5E-06 7.6E-11 55.7 3.2 25 17-41 1-25 (119)
411 COG5019 CDC3 Septin family pro 98.1 1.9E-05 4.1E-10 61.5 7.3 62 84-145 21-92 (373)
412 cd04157 Arl6 Arl6 subfamily. 98.0 4.3E-06 9.4E-11 58.0 3.5 36 17-52 1-37 (162)
413 cd04161 Arl2l1_Arl13_like Arl2 98.0 5.5E-06 1.2E-10 58.3 3.8 35 17-52 1-35 (167)
414 PRK12288 GTPase RsgA; Reviewed 98.0 1.2E-05 2.6E-10 63.2 5.8 58 89-149 208-271 (347)
415 cd00876 Ras Ras family. The R 98.0 7.2E-06 1.6E-10 56.6 4.0 34 17-50 1-34 (160)
416 COG4917 EutP Ethanolamine util 98.0 7.1E-06 1.5E-10 54.5 3.7 73 88-173 3-79 (148)
417 PRK12289 GTPase RsgA; Reviewed 98.0 1.4E-05 2.9E-10 63.0 5.7 57 89-148 175-237 (352)
418 KOG1547|consensus 98.0 4.3E-05 9.3E-10 56.5 7.8 62 84-145 44-114 (336)
419 KOG0705|consensus 98.0 7.2E-06 1.6E-10 66.7 4.1 82 85-173 29-110 (749)
420 TIGR03597 GTPase_YqeH ribosome 98.0 1.8E-05 3.9E-10 62.6 6.3 81 55-147 132-216 (360)
421 cd04156 ARLTS1 ARLTS1 subfamil 98.0 7.8E-06 1.7E-10 56.7 3.7 35 17-52 1-35 (160)
422 COG2262 HflX GTPases [General 98.0 2.6E-05 5.7E-10 61.5 6.8 89 83-172 189-285 (411)
423 TIGR00157 ribosome small subun 98.0 1.8E-05 3.9E-10 59.3 5.7 57 88-148 122-184 (245)
424 KOG2655|consensus 98.0 3.1E-05 6.8E-10 60.5 7.0 62 84-145 19-89 (366)
425 cd04154 Arl2 Arl2 subfamily. 98.0 1.1E-05 2.4E-10 56.9 4.1 38 14-52 13-50 (173)
426 cd00879 Sar1 Sar1 subfamily. 97.9 1.2E-05 2.6E-10 57.5 4.4 37 14-51 18-54 (190)
427 COG4108 PrfC Peptide chain rel 97.9 3.2E-05 6.9E-10 61.6 6.9 84 86-169 12-115 (528)
428 TIGR00231 small_GTP small GTP- 97.9 1.9E-05 4.2E-10 53.8 5.1 35 16-50 2-36 (161)
429 smart00176 RAN Ran (Ras-relate 97.9 6.6E-06 1.4E-10 59.9 2.5 35 21-55 1-35 (200)
430 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.9 1.4E-05 3E-10 56.6 4.0 37 15-52 15-51 (174)
431 PRK14845 translation initiatio 97.9 2.9E-05 6.3E-10 68.5 6.7 74 97-170 472-561 (1049)
432 KOG0468|consensus 97.9 8.6E-05 1.9E-09 62.0 8.8 88 83-170 125-232 (971)
433 PRK04213 GTP-binding protein; 97.9 1.6E-05 3.4E-10 57.6 4.1 35 13-47 7-41 (201)
434 smart00178 SAR Sar1p-like memb 97.9 1.7E-05 3.7E-10 56.7 4.2 37 13-50 15-51 (184)
435 cd04151 Arl1 Arl1 subfamily. 97.9 1.3E-05 2.9E-10 55.6 3.5 34 17-51 1-34 (158)
436 cd01851 GBP Guanylate-binding 97.9 4.6E-05 1E-09 56.4 6.5 82 86-168 7-101 (224)
437 KOG1486|consensus 97.9 8.1E-05 1.8E-09 55.5 7.5 84 86-172 62-153 (364)
438 PRK00454 engB GTP-binding prot 97.8 1.4E-05 3.1E-10 57.4 3.3 38 12-49 21-58 (196)
439 KOG3905|consensus 97.8 8.8E-05 1.9E-09 57.2 7.4 102 67-171 33-140 (473)
440 KOG1673|consensus 97.8 6.4E-06 1.4E-10 56.7 1.1 52 13-64 18-69 (205)
441 KOG0462|consensus 97.8 4.4E-05 9.5E-10 62.3 5.9 88 83-170 57-160 (650)
442 COG1618 Predicted nucleotide k 97.8 0.00011 2.3E-09 51.2 6.8 56 85-143 4-59 (179)
443 KOG1489|consensus 97.8 9.9E-05 2.1E-09 56.6 6.8 82 88-171 198-287 (366)
444 cd00878 Arf_Arl Arf (ADP-ribos 97.8 2.8E-05 6.2E-10 53.8 3.7 35 17-52 1-35 (158)
445 KOG1491|consensus 97.8 0.00016 3.5E-09 55.9 8.0 86 85-170 19-126 (391)
446 KOG1424|consensus 97.8 4E-05 8.7E-10 62.0 4.8 57 85-145 313-369 (562)
447 COG1217 TypA Predicted membran 97.8 0.00013 2.7E-09 58.7 7.5 85 86-170 5-103 (603)
448 COG1162 Predicted GTPases [Gen 97.8 5.5E-05 1.2E-09 57.8 5.2 59 88-149 166-230 (301)
449 KOG1145|consensus 97.8 7.8E-05 1.7E-09 60.9 6.3 85 85-170 152-236 (683)
450 KOG3887|consensus 97.7 2.5E-05 5.4E-10 57.8 3.1 81 87-170 28-113 (347)
451 cd01854 YjeQ_engC YjeQ/EngC. 97.7 7.8E-05 1.7E-09 57.3 5.8 60 87-149 162-227 (287)
452 cd04155 Arl3 Arl3 subfamily. 97.7 4.8E-05 1E-09 53.4 4.2 36 14-50 13-48 (173)
453 TIGR03598 GTPase_YsxC ribosome 97.7 3.6E-05 7.7E-10 54.8 3.3 35 13-47 16-50 (179)
454 PF00025 Arf: ADP-ribosylation 97.7 6E-05 1.3E-09 53.6 4.4 44 13-57 12-55 (175)
455 smart00053 DYNc Dynamin, GTPas 97.7 0.00034 7.4E-09 52.3 8.3 27 84-110 24-50 (240)
456 COG0481 LepA Membrane GTPase L 97.7 0.00018 3.9E-09 58.0 7.1 86 85-170 8-111 (603)
457 PRK00098 GTPase RsgA; Reviewed 97.7 0.00012 2.6E-09 56.5 5.9 23 88-110 166-188 (298)
458 KOG0082|consensus 97.6 0.00019 4.1E-09 56.2 6.7 38 134-171 194-231 (354)
459 cd04160 Arfrp1 Arfrp1 subfamil 97.6 6.6E-05 1.4E-09 52.4 3.7 34 17-50 1-40 (167)
460 PTZ00327 eukaryotic translatio 97.6 0.00013 2.9E-09 59.4 5.8 88 83-170 31-152 (460)
461 PRK15494 era GTPase Era; Provi 97.6 0.00011 2.3E-09 57.8 5.1 37 14-50 51-90 (339)
462 COG0480 FusA Translation elong 97.6 0.00032 6.9E-09 59.8 8.0 88 83-170 7-111 (697)
463 smart00275 G_alpha G protein a 97.6 0.00033 7.2E-09 55.1 7.6 52 116-171 169-220 (342)
464 PF03029 ATP_bind_1: Conserved 97.6 3.7E-05 8E-10 57.4 2.1 34 136-169 92-133 (238)
465 KOG0458|consensus 97.6 0.00052 1.1E-08 56.5 8.5 89 82-170 173-290 (603)
466 cd04105 SR_beta Signal recogni 97.6 6.8E-05 1.5E-09 54.6 3.1 31 17-47 2-32 (203)
467 cd01878 HflX HflX subfamily. 97.5 0.00013 2.7E-09 52.9 4.3 27 14-40 40-66 (204)
468 cd04104 p47_IIGP_like p47 (47- 97.5 9.3E-05 2E-09 53.6 3.6 28 16-43 2-29 (197)
469 cd01850 CDC_Septin CDC/Septin. 97.5 0.00019 4.2E-09 54.8 5.3 30 14-43 3-32 (276)
470 cd01876 YihA_EngB The YihA (En 97.5 7.1E-05 1.5E-09 51.8 2.6 33 17-49 1-33 (170)
471 cd01897 NOG NOG1 is a nucleola 97.5 9.7E-05 2.1E-09 51.6 3.2 25 17-41 2-26 (168)
472 PRK13768 GTPase; Provisional 97.4 0.00023 4.9E-09 53.7 4.6 36 136-171 98-141 (253)
473 COG0536 Obg Predicted GTPase [ 97.4 0.00051 1.1E-08 53.3 6.3 82 89-172 162-251 (369)
474 KOG0083|consensus 97.4 1.8E-05 3.9E-10 53.1 -1.3 47 19-65 1-48 (192)
475 KOG4423|consensus 97.4 1.1E-05 2.4E-10 57.1 -2.4 40 13-52 23-62 (229)
476 KOG3859|consensus 97.4 0.00048 1E-08 52.1 5.6 61 84-144 40-104 (406)
477 cd01887 IF2_eIF5B IF2/eIF5B (i 97.4 0.00017 3.7E-09 50.2 3.1 27 17-43 2-28 (168)
478 PF03266 NTPase_1: NTPase; In 97.3 0.00029 6.3E-09 49.8 4.1 52 88-142 1-52 (168)
479 PF01926 MMR_HSR1: 50S ribosom 97.3 0.0002 4.4E-09 47.1 3.1 22 17-38 1-22 (116)
480 TIGR03156 GTP_HflX GTP-binding 97.3 0.00035 7.7E-09 55.1 4.6 40 15-54 189-230 (351)
481 PF13207 AAA_17: AAA domain; P 97.3 0.00027 5.8E-09 46.8 3.3 22 88-109 1-22 (121)
482 cd04171 SelB SelB subfamily. 97.2 0.00024 5.1E-09 49.2 2.7 21 17-37 2-22 (164)
483 PF02421 FeoB_N: Ferrous iron 97.2 0.0003 6.6E-09 49.1 3.1 25 16-40 1-25 (156)
484 cd01891 TypA_BipA TypA (tyrosi 97.2 0.00031 6.7E-09 50.6 3.2 28 17-44 4-33 (194)
485 PF03193 DUF258: Protein of un 97.2 0.0003 6.5E-09 49.3 2.9 22 17-38 37-58 (161)
486 cd01895 EngA2 EngA2 subfamily. 97.2 0.00027 5.8E-09 49.2 2.7 25 16-40 3-27 (174)
487 cd04164 trmE TrmE (MnmE, ThdF, 97.2 0.00031 6.7E-09 48.1 2.9 25 16-40 2-26 (157)
488 KOG1144|consensus 97.2 0.00068 1.5E-08 57.5 5.3 85 86-170 475-575 (1064)
489 KOG0096|consensus 97.2 0.00072 1.6E-08 48.2 4.5 39 14-52 9-47 (216)
490 cd04163 Era Era subfamily. Er 97.2 0.00041 8.8E-09 47.8 3.2 26 15-40 3-28 (168)
491 TIGR00450 mnmE_trmE_thdF tRNA 97.2 0.00053 1.2E-08 55.8 4.3 26 14-39 202-227 (442)
492 KOG0410|consensus 97.2 0.0009 1.9E-08 51.7 5.2 86 85-172 177-271 (410)
493 PRK08118 topology modulation p 97.2 0.0004 8.7E-09 49.0 3.1 22 88-109 3-24 (167)
494 PF10662 PduV-EutP: Ethanolami 97.1 0.00077 1.7E-08 46.3 4.2 54 17-71 3-56 (143)
495 KOG1954|consensus 97.1 0.0031 6.6E-08 49.7 7.6 34 81-114 53-86 (532)
496 COG0563 Adk Adenylate kinase a 97.1 0.0005 1.1E-08 49.1 3.1 22 88-109 2-23 (178)
497 COG2895 CysN GTPases - Sulfate 97.1 0.0018 3.9E-08 50.6 6.1 86 84-169 4-120 (431)
498 PRK09866 hypothetical protein; 97.1 0.0016 3.4E-08 55.0 6.2 155 16-173 70-273 (741)
499 TIGR00436 era GTP-binding prot 97.1 0.00047 1E-08 52.4 2.9 25 17-41 2-26 (270)
500 PF13671 AAA_33: AAA domain; P 97.0 0.00059 1.3E-08 46.4 3.0 20 89-108 2-21 (143)
No 1
>KOG0084|consensus
Probab=99.97 E-value=1.1e-30 Score=182.90 Aligned_cols=94 Identities=53% Similarity=0.981 Sum_probs=90.8
Q ss_pred CCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC
Q psy13826 80 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA 159 (173)
Q Consensus 80 ~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~ 159 (173)
.+.+++.|||+++|++|||||+|+.||+++.|.+.|..|+|+++..+.+.++++.++|+||||+|||+|+.+...|||+|
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCC
Q psy13826 160 AGALMVIDVSHVKE 173 (173)
Q Consensus 160 ~~~ilv~d~t~~~S 173 (173)
|++|+|||+|+++|
T Consensus 83 hGii~vyDiT~~~S 96 (205)
T KOG0084|consen 83 HGIIFVYDITKQES 96 (205)
T ss_pred CeEEEEEEcccHHH
Confidence 99999999999876
No 2
>KOG0094|consensus
Probab=99.95 E-value=1.1e-27 Score=167.57 Aligned_cols=89 Identities=36% Similarity=0.684 Sum_probs=86.5
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+|++++|+.+||||||++||+.+.|...|.+|+|+++....+.+.++.+.|++|||+|||+|+.+.+.|+|++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|||++|+.|
T Consensus 101 VyDit~~~S 109 (221)
T KOG0094|consen 101 VYDITDRNS 109 (221)
T ss_pred EEeccccch
Confidence 999999876
No 3
>KOG0080|consensus
Probab=99.95 E-value=3.4e-27 Score=160.33 Aligned_cols=93 Identities=49% Similarity=0.888 Sum_probs=89.1
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
..+...+||+++|++|||||||+.+|..+.|.+..+.|+|+++..+.+.++++++++.||||+|||+|+.+.+.||+.|.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 55677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCC
Q psy13826 161 GALMVIDVSHVKE 173 (173)
Q Consensus 161 ~~ilv~d~t~~~S 173 (173)
++|+|||+|.+++
T Consensus 86 GiIlVYDVT~Rdt 98 (209)
T KOG0080|consen 86 GIILVYDVTSRDT 98 (209)
T ss_pred eeEEEEEccchhh
Confidence 9999999999874
No 4
>KOG0092|consensus
Probab=99.95 E-value=1.8e-27 Score=166.20 Aligned_cols=89 Identities=42% Similarity=0.770 Sum_probs=86.3
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+|++++|+.+||||||+.||..+.|.+...||+|..+.++.+.+++..++++||||+|||+|+.+.+.|||+|+++|+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|||+||.+|
T Consensus 84 vYDit~~~S 92 (200)
T KOG0092|consen 84 VYDITDEES 92 (200)
T ss_pred EEecccHHH
Confidence 999999876
No 5
>KOG0078|consensus
Probab=99.94 E-value=3.3e-26 Score=162.39 Aligned_cols=93 Identities=54% Similarity=1.009 Sum_probs=90.1
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
..++..+|++++|+++||||+++.+|..+.|...+..|+|+++..+.+.++++.+.+++|||+||++|+.+...||+.|+
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCC
Q psy13826 161 GALMVIDVSHVKE 173 (173)
Q Consensus 161 ~~ilv~d~t~~~S 173 (173)
++++|||+||..|
T Consensus 87 gi~LvyDitne~S 99 (207)
T KOG0078|consen 87 GILLVYDITNEKS 99 (207)
T ss_pred eeEEEEEccchHH
Confidence 9999999999875
No 6
>KOG0098|consensus
Probab=99.93 E-value=4.1e-26 Score=158.57 Aligned_cols=91 Identities=66% Similarity=1.175 Sum_probs=88.1
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
+...+|++++|+.|||||+|+.||+++.|...+..|+|+++..+.+.++++.++|+||||+|||.|+.++..||+.|.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCC
Q psy13826 163 LMVIDVSHVKE 173 (173)
Q Consensus 163 ilv~d~t~~~S 173 (173)
|||||+++++|
T Consensus 83 lLVydit~r~s 93 (216)
T KOG0098|consen 83 LLVYDITRRES 93 (216)
T ss_pred EEEEEccchhh
Confidence 99999999876
No 7
>KOG0086|consensus
Probab=99.93 E-value=3.4e-26 Score=154.41 Aligned_cols=94 Identities=65% Similarity=1.155 Sum_probs=90.9
Q ss_pred CCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC
Q psy13826 80 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA 159 (173)
Q Consensus 80 ~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~ 159 (173)
.+.+++.+|++++|+.|.|||+|+++|+.++|.++.+.|+|+++..+.+.+.++.++|+||||+|||+|+...+.||+.|
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCC
Q psy13826 160 AGALMVIDVSHVKE 173 (173)
Q Consensus 160 ~~~ilv~d~t~~~S 173 (173)
-+.++|||+|+++|
T Consensus 83 AGAlLVYD~Tsrds 96 (214)
T KOG0086|consen 83 AGALLVYDITSRDS 96 (214)
T ss_pred cceEEEEeccchhh
Confidence 99999999999986
No 8
>KOG0095|consensus
Probab=99.93 E-value=1.6e-25 Score=150.66 Aligned_cols=93 Identities=52% Similarity=0.944 Sum_probs=88.8
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
+.+...|||+++|..|||||+|+++|..+-|+.....|+|+++..+++++++.+++|+||||+||++|+.+...||+.|+
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCC
Q psy13826 161 GALMVIDVSHVKE 173 (173)
Q Consensus 161 ~~ilv~d~t~~~S 173 (173)
++|++||++-..|
T Consensus 82 alilvydiscqps 94 (213)
T KOG0095|consen 82 ALILVYDISCQPS 94 (213)
T ss_pred eEEEEEecccCcc
Confidence 9999999987654
No 9
>KOG0079|consensus
Probab=99.93 E-value=2.3e-26 Score=154.30 Aligned_cols=92 Identities=50% Similarity=0.942 Sum_probs=88.6
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 161 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 161 (173)
.++..+|.+++|++|||||+|+.+|..+.|...|..|+|.++..+++.+++..++|+|||++|+|+|+.+...||+..++
T Consensus 4 ~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 4 DYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred cHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCC
Q psy13826 162 ALMVIDVSHVKE 173 (173)
Q Consensus 162 ~ilv~d~t~~~S 173 (173)
+++|||+||.||
T Consensus 84 v~vVYDVTn~ES 95 (198)
T KOG0079|consen 84 VIVVYDVTNGES 95 (198)
T ss_pred EEEEEECcchhh
Confidence 999999999886
No 10
>KOG0087|consensus
Probab=99.93 E-value=7.8e-26 Score=160.12 Aligned_cols=95 Identities=53% Similarity=0.927 Sum_probs=90.6
Q ss_pred CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826 79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158 (173)
Q Consensus 79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~ 158 (173)
....+++.||++++|+++||||-|+.||..++|..+..+|+|+++.+..+.++++.++.+||||+|||+|+.+...||+.
T Consensus 7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg 86 (222)
T KOG0087|consen 7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG 86 (222)
T ss_pred CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCC
Q psy13826 159 AAGALMVIDVSHVKE 173 (173)
Q Consensus 159 ~~~~ilv~d~t~~~S 173 (173)
|.++++|||+|.+.+
T Consensus 87 AvGAllVYDITr~~T 101 (222)
T KOG0087|consen 87 AVGALLVYDITRRQT 101 (222)
T ss_pred cceeEEEEechhHHH
Confidence 999999999998753
No 11
>KOG0394|consensus
Probab=99.92 E-value=1.2e-25 Score=156.00 Aligned_cols=91 Identities=43% Similarity=0.767 Sum_probs=87.6
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
....+||+++|++|||||||+++|.++.|...|..|+|.++.++.+.++++.+.++||||+|||+|..+.-.+||+||+.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCC
Q psy13826 163 LMVIDVSHVKE 173 (173)
Q Consensus 163 ilv~d~t~~~S 173 (173)
++|||+++++|
T Consensus 86 vlvydv~~~~S 96 (210)
T KOG0394|consen 86 VLVYDVNNPKS 96 (210)
T ss_pred EEEeecCChhh
Confidence 99999999876
No 12
>KOG0093|consensus
Probab=99.92 E-value=1e-24 Score=146.26 Aligned_cols=95 Identities=38% Similarity=0.805 Sum_probs=90.0
Q ss_pred CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826 79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158 (173)
Q Consensus 79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~ 158 (173)
..+.++..+|++++|++.||||||+.+++++.|...+..|.|+++..+++.-..++++++||||+|+|+|+.+...|||+
T Consensus 14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRg 93 (193)
T KOG0093|consen 14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRG 93 (193)
T ss_pred ccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhc
Confidence 34567888999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCC
Q psy13826 159 AAGALMVIDVSHVKE 173 (173)
Q Consensus 159 ~~~~ilv~d~t~~~S 173 (173)
|+++|||||+||.+|
T Consensus 94 amgfiLmyDitNeeS 108 (193)
T KOG0093|consen 94 AMGFILMYDITNEES 108 (193)
T ss_pred cceEEEEEecCCHHH
Confidence 999999999999886
No 13
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.91 E-value=9.1e-24 Score=153.63 Aligned_cols=87 Identities=46% Similarity=0.924 Sum_probs=82.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+.|+++|+.|||||||+++|+.+.|..++.+|++.++....+.++++.+.+++|||+|+++|..+++.|++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|++|++|
T Consensus 81 Dvtd~~S 87 (202)
T cd04120 81 DITKKET 87 (202)
T ss_pred ECcCHHH
Confidence 9999875
No 14
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.90 E-value=1.5e-23 Score=150.31 Aligned_cols=89 Identities=27% Similarity=0.508 Sum_probs=82.5
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|+++||||||+++|+.+.|..++.||++..+ ...+.+++..+.++||||+|+++|..+++.+++++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4568999999999999999999999999999999999776 456788999999999999999999999999999999999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
+|||+++++|
T Consensus 82 lvyDit~~~S 91 (182)
T cd04172 82 ICFDISRPET 91 (182)
T ss_pred EEEECCCHHH
Confidence 9999999875
No 15
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=2.6e-23 Score=148.57 Aligned_cols=86 Identities=26% Similarity=0.519 Sum_probs=80.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||+++|+++.|+.++.||++..+ ...+.+++..+.+++|||+|+++|..+++.++++++++|+||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 7999999999999999999999999999999998776 456788999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 81 dit~~~S 87 (178)
T cd04131 81 DISRPET 87 (178)
T ss_pred ECCChhh
Confidence 9999876
No 16
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.90 E-value=2.4e-23 Score=150.00 Aligned_cols=91 Identities=35% Similarity=0.723 Sum_probs=84.9
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
++..+||+++|+.|||||||+.+|.++.|..++.++++.++....+.+++..+.+++||++|+++|..+++.+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999999988989999988888888899999999999999999999999999999999
Q ss_pred EEEEeCCCCCC
Q psy13826 163 LMVIDVSHVKE 173 (173)
Q Consensus 163 ilv~d~t~~~S 173 (173)
|+|||+++++|
T Consensus 83 llVfD~t~~~S 93 (189)
T cd04121 83 ILVYDITNRWS 93 (189)
T ss_pred EEEEECcCHHH
Confidence 99999999865
No 17
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.90 E-value=2.5e-23 Score=148.35 Aligned_cols=86 Identities=33% Similarity=0.575 Sum_probs=80.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+|++++|+++||||||+.+|+.+.|..++.||++..+ ...+.+++..+.++||||+|+++|..+++.++++++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6999999999999999999999999999999999876 455678999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 81 d~~~~~S 87 (176)
T cd04133 81 SLISRAS 87 (176)
T ss_pred EcCCHHH
Confidence 9999876
No 18
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.90 E-value=2.7e-23 Score=150.11 Aligned_cols=87 Identities=26% Similarity=0.500 Sum_probs=80.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.+||+++|+++||||||+.+|..+.|..++.||++..+. ..+.++++.+.++||||+|+++|+.+++.+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 489999999999999999999999999999999997764 4567899999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q psy13826 166 IDVSHVKE 173 (173)
Q Consensus 166 ~d~t~~~S 173 (173)
||++|++|
T Consensus 82 ydit~~~S 89 (191)
T cd01875 82 FSIASPSS 89 (191)
T ss_pred EECCCHHH
Confidence 99999865
No 19
>KOG0091|consensus
Probab=99.90 E-value=2.7e-24 Score=146.64 Aligned_cols=92 Identities=52% Similarity=0.901 Sum_probs=86.5
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
-+.+.++++++||+.||||||+++|..+.|.+-.+||+|+++..+.+++ .+.+++|++|||+|||+|+.+...||+++-
T Consensus 4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 3567899999999999999999999999999999999999998877776 678999999999999999999999999999
Q ss_pred EEEEEEeCCCCCC
Q psy13826 161 GALMVIDVSHVKE 173 (173)
Q Consensus 161 ~~ilv~d~t~~~S 173 (173)
++++|||+||++|
T Consensus 84 gvllvyditnr~s 96 (213)
T KOG0091|consen 84 GVLLVYDITNRES 96 (213)
T ss_pred ceEEEEeccchhh
Confidence 9999999999986
No 20
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=4.9e-23 Score=152.44 Aligned_cols=89 Identities=20% Similarity=0.438 Sum_probs=82.7
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++|+++.|..++.||++.++. ..+.+++..+.++||||+|+++|..+++.+|++|+++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 45789999999999999999999999999999999998774 46788999999999999999999999999999999999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
+|||+++++|
T Consensus 90 lVyDit~~~S 99 (232)
T cd04174 90 LCFDISRPET 99 (232)
T ss_pred EEEECCChHH
Confidence 9999999875
No 21
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.89 E-value=5e-23 Score=147.63 Aligned_cols=87 Identities=29% Similarity=0.555 Sum_probs=82.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+|++++|++|||||||+++|+++.|..++.||++.++....+.+++..+.+++||++|+++|..+++.+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999999999999999888788889999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 81 D~t~~~s 87 (182)
T cd04128 81 DLTRKST 87 (182)
T ss_pred ECcCHHH
Confidence 9999864
No 22
>KOG0088|consensus
Probab=99.89 E-value=3.2e-24 Score=145.61 Aligned_cols=93 Identities=38% Similarity=0.667 Sum_probs=88.1
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
......||++++|...||||||+-||+.+.|...+-.|+..++..+.+.+.+.+..|.||||+||++|+.+.|.||++++
T Consensus 8 ~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSn 87 (218)
T KOG0088|consen 8 DGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSN 87 (218)
T ss_pred cCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCC
Q psy13826 161 GALMVIDVSHVKE 173 (173)
Q Consensus 161 ~~ilv~d~t~~~S 173 (173)
++++|||+||++|
T Consensus 88 GalLVyDITDrdS 100 (218)
T KOG0088|consen 88 GALLVYDITDRDS 100 (218)
T ss_pred ceEEEEeccchHH
Confidence 9999999999986
No 23
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.89 E-value=1.2e-22 Score=143.26 Aligned_cols=88 Identities=88% Similarity=1.412 Sum_probs=82.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.+||+++|++|||||||+++|++++|...+.+|++.++....+.+++..+.+.+||++|++++..+++.++++++++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999999999999988888888899999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q psy13826 166 IDVSHVKE 173 (173)
Q Consensus 166 ~d~t~~~S 173 (173)
||+++++|
T Consensus 82 ~d~~~~~s 89 (166)
T cd04122 82 YDITRRST 89 (166)
T ss_pred EECCCHHH
Confidence 99999764
No 24
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.89 E-value=1.2e-22 Score=147.52 Aligned_cols=87 Identities=23% Similarity=0.522 Sum_probs=80.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC-----CeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-----GEKIKLQIWDTAGQERFRAVTRSYYRGAAG 161 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 161 (173)
+||+++|+++||||||+++|+++.|..++.+|++.++..+.+.++ ++.+.++|||++|+++|..+++.+|+++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999999999999988877766664 578999999999999999999999999999
Q ss_pred EEEEEeCCCCCC
Q psy13826 162 ALMVIDVSHVKE 173 (173)
Q Consensus 162 ~ilv~d~t~~~S 173 (173)
+|+|||++|++|
T Consensus 81 iIlVyDvtn~~S 92 (202)
T cd04102 81 IILVHDLTNRKS 92 (202)
T ss_pred EEEEEECcChHH
Confidence 999999999875
No 25
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.89 E-value=1.6e-22 Score=144.14 Aligned_cols=86 Identities=29% Similarity=0.479 Sum_probs=79.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||+++|.++.|..++.||++..+. ..+.+++..+.++|||++|+++|..+++.+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999999999999998774 45677888999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 81 d~~~~~s 87 (175)
T cd01874 81 SVVSPSS 87 (175)
T ss_pred ECCCHHH
Confidence 9999864
No 26
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.89 E-value=9.8e-23 Score=150.03 Aligned_cols=86 Identities=24% Similarity=0.494 Sum_probs=80.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||+++|..+.|+.+|.||++.++. ..+.+++..+.|.||||+|++.|..+++.+|+++|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999999999999998774 56788999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 81 dis~~~S 87 (222)
T cd04173 81 DISRPET 87 (222)
T ss_pred ECCCHHH
Confidence 9999864
No 27
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=2.1e-22 Score=146.47 Aligned_cols=87 Identities=44% Similarity=0.854 Sum_probs=81.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
+||+++|++|||||||+++|+++.+...+.||++.++....+.++ +..+.+.+||++|+++|..+++.++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999999999999988877777887 8899999999999999999999999999999999
Q ss_pred EeCCCCCC
Q psy13826 166 IDVSHVKE 173 (173)
Q Consensus 166 ~d~t~~~S 173 (173)
||+++++|
T Consensus 81 ~D~t~~~s 88 (201)
T cd04107 81 FDVTRPST 88 (201)
T ss_pred EECCCHHH
Confidence 99999864
No 28
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.88 E-value=3.6e-22 Score=141.70 Aligned_cols=86 Identities=43% Similarity=0.864 Sum_probs=81.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID 167 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d 167 (173)
||+++|++|||||||+++|+++.|..+|.||++.++....+.+++..+.+++||++|+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 89999999999999999999999999999999998887788888989999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy13826 168 VSHVKE 173 (173)
Q Consensus 168 ~t~~~S 173 (173)
+++++|
T Consensus 82 ~~~~~s 87 (170)
T cd04108 82 LTDVAS 87 (170)
T ss_pred CcCHHH
Confidence 998653
No 29
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.88 E-value=5e-22 Score=146.36 Aligned_cols=91 Identities=32% Similarity=0.490 Sum_probs=84.4
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
....+||+++|++|||||||+++|+.+.|...+.+|++.++....+..++..+.+.+||++|+++|..+++.+++.++++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 36779999999999999999999999999999999999988877777788889999999999999999999999999999
Q ss_pred EEEEeCCCCCC
Q psy13826 163 LMVIDVSHVKE 173 (173)
Q Consensus 163 ilv~d~t~~~S 173 (173)
|+|||+++++|
T Consensus 90 ilvfD~~~~~s 100 (219)
T PLN03071 90 IIMFDVTARLT 100 (219)
T ss_pred EEEEeCCCHHH
Confidence 99999999864
No 30
>KOG0097|consensus
Probab=99.88 E-value=2e-22 Score=134.74 Aligned_cols=93 Identities=87% Similarity=1.426 Sum_probs=88.2
Q ss_pred CCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC
Q psy13826 80 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA 159 (173)
Q Consensus 80 ~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~ 159 (173)
...+.+.||.+++|+.|||||+|+++|....|..+-+.|+|+++.++.+++.++.++++||||+||++|+...+.||+.+
T Consensus 5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrga 84 (215)
T KOG0097|consen 5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 84 (215)
T ss_pred ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCC
Q psy13826 160 AGALMVIDVSHVK 172 (173)
Q Consensus 160 ~~~ilv~d~t~~~ 172 (173)
.+.++|||+|.+.
T Consensus 85 agalmvyditrrs 97 (215)
T KOG0097|consen 85 AGALMVYDITRRS 97 (215)
T ss_pred cceeEEEEehhhh
Confidence 9999999998764
No 31
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.87 E-value=6.5e-22 Score=139.09 Aligned_cols=87 Identities=29% Similarity=0.716 Sum_probs=81.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||+++++++++...+.||++.++....+.+++..+.+++|||+|++.+..+++.+++.++++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999999999999999988888888999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 81 D~~~~~s 87 (168)
T cd04119 81 DVTDRQS 87 (168)
T ss_pred ECCCHHH
Confidence 9998753
No 32
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.87 E-value=6.5e-22 Score=139.74 Aligned_cols=89 Identities=58% Similarity=1.066 Sum_probs=82.8
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|++|||||||++++.++.|...+.||.+.++....+..++..+.+++||++|++++..++..+++++|++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999999999999999988877788888888999999999999999999999999999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|||+++++|
T Consensus 82 v~d~~~~~s 90 (167)
T cd01867 82 VYDITDEKS 90 (167)
T ss_pred EEECcCHHH
Confidence 999998754
No 33
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.87 E-value=1e-21 Score=138.11 Aligned_cols=87 Identities=49% Similarity=0.957 Sum_probs=81.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||+++|.+++|...+.||++.++....+.+++..+.+++||++|++++..+++.+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999999999999998887778888888999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 81 d~~~~~s 87 (161)
T cd04117 81 DISSERS 87 (161)
T ss_pred ECCCHHH
Confidence 9999864
No 34
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.87 E-value=9.7e-22 Score=139.99 Aligned_cols=86 Identities=28% Similarity=0.507 Sum_probs=78.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||+.+|+.+.|..++.||++..+ ...+.+++..+.+.||||+|++.|..+++.+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 6999999999999999999999999999999987655 445678889999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 81 d~~~~~s 87 (174)
T cd01871 81 SLVSPAS 87 (174)
T ss_pred ECCCHHH
Confidence 9999875
No 35
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.87 E-value=1.1e-21 Score=139.34 Aligned_cols=87 Identities=30% Similarity=0.460 Sum_probs=80.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.+||+++|++|||||||+++|.+++|...+.||++..+ ...+.+++..+.+.+||++|+++|..+++.+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 37999999999999999999999999999999998666 44567889999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q psy13826 166 IDVSHVKE 173 (173)
Q Consensus 166 ~d~t~~~S 173 (173)
||+++++|
T Consensus 81 ~d~~~~~S 88 (172)
T cd04141 81 YSVTDRHS 88 (172)
T ss_pred EECCchhH
Confidence 99999875
No 36
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.87 E-value=1e-21 Score=137.69 Aligned_cols=86 Identities=34% Similarity=0.579 Sum_probs=78.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||+++++.+.|...+.||++..+ ...+.+++..+.+++||++|+++|..+++.++++++++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999999988999987443 556778888999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 81 d~~~~~s 87 (163)
T cd04136 81 SITSQSS 87 (163)
T ss_pred ECCCHHH
Confidence 9998753
No 37
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.87 E-value=1.5e-21 Score=141.88 Aligned_cols=90 Identities=52% Similarity=0.938 Sum_probs=83.1
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
+..+||+++|++|||||||+++|++++|...+.+|++.++....+.+++..+.+.+||++|++.+..++..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45799999999999999999999999998889999998887777788888899999999999999999999999999999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
+|||+++++|
T Consensus 84 lv~D~~~~~s 93 (199)
T cd04110 84 VVYDVTNGES 93 (199)
T ss_pred EEEECCCHHH
Confidence 9999999864
No 38
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.87 E-value=1.6e-21 Score=137.36 Aligned_cols=88 Identities=56% Similarity=0.998 Sum_probs=81.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.+||+++|++|||||||+++++++.+...+.+|.+.++....+.+++..+.+++||++|++++..++..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999999888899999888878888888899999999999999999999999999999999
Q ss_pred EeCCCCCC
Q psy13826 166 IDVSHVKE 173 (173)
Q Consensus 166 ~d~t~~~S 173 (173)
||+++++|
T Consensus 82 ~d~~~~~s 89 (166)
T cd01869 82 YDVTDQES 89 (166)
T ss_pred EECcCHHH
Confidence 99999764
No 39
>PLN03110 Rab GTPase; Provisional
Probab=99.86 E-value=2.7e-21 Score=142.15 Aligned_cols=92 Identities=54% Similarity=0.991 Sum_probs=85.4
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 161 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 161 (173)
..+..+||+++|++|||||||+++|.++.+..++.+|++.++....+.+++..+.++|||++|++++..++..+++.+++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 35577999999999999999999999999988899999999888888899999999999999999999999999999999
Q ss_pred EEEEEeCCCCCC
Q psy13826 162 ALMVIDVSHVKE 173 (173)
Q Consensus 162 ~ilv~d~t~~~S 173 (173)
+|+|||+++++|
T Consensus 88 ~ilv~d~~~~~s 99 (216)
T PLN03110 88 ALLVYDITKRQT 99 (216)
T ss_pred EEEEEECCChHH
Confidence 999999998764
No 40
>PLN00023 GTP-binding protein; Provisional
Probab=99.86 E-value=1.5e-21 Score=149.16 Aligned_cols=93 Identities=27% Similarity=0.529 Sum_probs=83.0
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC-------------CeEEEEEEEeCCCccc
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-------------GEKIKLQIWDTAGQER 147 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~D~~g~~~ 147 (173)
......+||+++|+.|||||||+++|+++.|...+.+|+|.++....+.++ ++.+.++|||++|+++
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 334567999999999999999999999999999999999998877766664 3578999999999999
Q ss_pred cccchhhhhcCCCEEEEEEeCCCCCC
Q psy13826 148 FRAVTRSYYRGAAGALMVIDVSHVKE 173 (173)
Q Consensus 148 ~~~~~~~~~~~~~~~ilv~d~t~~~S 173 (173)
|..+++.||++++++|+|||+++++|
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~S 121 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRT 121 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHH
Confidence 99999999999999999999999764
No 41
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.86 E-value=1.5e-21 Score=137.09 Aligned_cols=87 Identities=32% Similarity=0.503 Sum_probs=78.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.+||+++|++|||||||+++++.+++...+.+|.+. +....+.+++..+.++|||++|+++|..+++.+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhh-eEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 379999999999999999999999999888888863 4456777888899999999999999999999999999999999
Q ss_pred EeCCCCCC
Q psy13826 166 IDVSHVKE 173 (173)
Q Consensus 166 ~d~t~~~S 173 (173)
||+++++|
T Consensus 80 ~d~~~~~s 87 (163)
T cd04176 80 YSLVNQQT 87 (163)
T ss_pred EECCCHHH
Confidence 99999764
No 42
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.86 E-value=2.4e-21 Score=137.00 Aligned_cols=90 Identities=46% Similarity=0.788 Sum_probs=83.2
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.++|||++|++++..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 35699999999999999999999999999888899998887777888999999999999999999999999999999999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
+|||+++++|
T Consensus 83 ~v~d~~~~~s 92 (170)
T cd04116 83 LTFAVDDSQS 92 (170)
T ss_pred EEEECCCHHH
Confidence 9999998764
No 43
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.86 E-value=1.8e-21 Score=137.18 Aligned_cols=87 Identities=39% Similarity=0.832 Sum_probs=80.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||++++.+++|...+.||.+.++....+..++..+.+++||++|++++..++..++++++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999999899999998887777777888899999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 82 d~~~~~s 88 (165)
T cd01865 82 DITNEES 88 (165)
T ss_pred ECCCHHH
Confidence 9998754
No 44
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.86 E-value=1.6e-21 Score=139.07 Aligned_cols=90 Identities=41% Similarity=0.878 Sum_probs=80.7
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC----------CeEEEEEEEeCCCccccccchh
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH----------GEKIKLQIWDTAGQERFRAVTR 153 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------~~~~~l~i~D~~g~~~~~~~~~ 153 (173)
++.+||+++|++|||||||++++.++.+...+.+|++.++....+.+. +..+.+++||++|+++|..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 356999999999999999999999999999999999988876666554 4578999999999999999999
Q ss_pred hhhcCCCEEEEEEeCCCCCC
Q psy13826 154 SYYRGAAGALMVIDVSHVKE 173 (173)
Q Consensus 154 ~~~~~~~~~ilv~d~t~~~S 173 (173)
.+++++|++|+|||+++++|
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s 101 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQS 101 (180)
T ss_pred HHhCCCCEEEEEEECCCHHH
Confidence 99999999999999998764
No 45
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.86 E-value=1.5e-21 Score=143.37 Aligned_cols=87 Identities=31% Similarity=0.591 Sum_probs=80.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG-EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
+||+++|++|||||||+++|+++.|...+.||++.++....+.+++ ..+.++|||++|++.+..+++.+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999999999999988777777754 579999999999999999999999999999999
Q ss_pred EeCCCCCC
Q psy13826 166 IDVSHVKE 173 (173)
Q Consensus 166 ~d~t~~~S 173 (173)
||+++++|
T Consensus 81 ~D~t~~~s 88 (215)
T cd04109 81 YDVTNSQS 88 (215)
T ss_pred EECCCHHH
Confidence 99999864
No 46
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.86 E-value=2.6e-21 Score=135.95 Aligned_cols=86 Identities=35% Similarity=0.601 Sum_probs=79.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||++++++++|...+.++.+.++....+.+++..+.+++|||+|+++|..+++.+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998888888887776667778889999999999999999999999999999999999
Q ss_pred eCCCCC
Q psy13826 167 DVSHVK 172 (173)
Q Consensus 167 d~t~~~ 172 (173)
|+++++
T Consensus 81 d~~~~~ 86 (161)
T cd04124 81 DVTRKI 86 (161)
T ss_pred ECCCHH
Confidence 999875
No 47
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.86 E-value=2.4e-21 Score=137.34 Aligned_cols=90 Identities=24% Similarity=0.335 Sum_probs=82.7
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
...+||+++|++|||||||+++|+++.|. .++.||++.++....+.+++..+.+.+||++|++.+..+++.+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35799999999999999999999999998 88999999888777788888889999999999999999999999999999
Q ss_pred EEEEeCCCCCC
Q psy13826 163 LMVIDVSHVKE 173 (173)
Q Consensus 163 ilv~d~t~~~S 173 (173)
|+|||+++++|
T Consensus 82 llv~d~~~~~s 92 (169)
T cd01892 82 CLVYDSSDPKS 92 (169)
T ss_pred EEEEeCCCHHH
Confidence 99999998753
No 48
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.86 E-value=3.4e-21 Score=136.12 Aligned_cols=87 Identities=32% Similarity=0.616 Sum_probs=80.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||+++++.+.+...+.+|++.++....+..++..+.+.+|||+|++++..+++.+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999999998889999998887777777888999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 81 d~~~~~s 87 (166)
T cd00877 81 DVTSRVT 87 (166)
T ss_pred ECCCHHH
Confidence 9998764
No 49
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.86 E-value=1.5e-21 Score=136.86 Aligned_cols=86 Identities=33% Similarity=0.711 Sum_probs=82.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID 167 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d 167 (173)
||+++|+++||||||+++|.++.|...+.+|.+.+.....+.+++..+.+++||++|+++|..+++.+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy13826 168 VSHVKE 173 (173)
Q Consensus 168 ~t~~~S 173 (173)
++|++|
T Consensus 81 ~~~~~S 86 (162)
T PF00071_consen 81 VTDEES 86 (162)
T ss_dssp TTBHHH
T ss_pred cccccc
Confidence 999764
No 50
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.86 E-value=3.1e-21 Score=136.42 Aligned_cols=90 Identities=67% Similarity=1.165 Sum_probs=83.4
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
+..+||+++|++|||||||+++++++++...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++|
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999999998888999999888888888998999999999999999999999999999999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
+|||+++++|
T Consensus 82 ~v~d~~~~~s 91 (168)
T cd01866 82 LVYDITRRET 91 (168)
T ss_pred EEEECCCHHH
Confidence 9999998754
No 51
>PTZ00369 Ras-like protein; Provisional
Probab=99.86 E-value=2.3e-21 Score=139.73 Aligned_cols=88 Identities=32% Similarity=0.508 Sum_probs=80.6
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|++|||||||+++|+++.|...+.||++..+ ...+.+++..+.+++|||+|+++|..+++.+++.++++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 358999999999999999999999999989999998776 4567788999999999999999999999999999999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|||+++++|
T Consensus 83 v~D~s~~~s 91 (189)
T PTZ00369 83 VYSITSRSS 91 (189)
T ss_pred EEECCCHHH
Confidence 999999754
No 52
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=3.3e-21 Score=141.26 Aligned_cols=88 Identities=53% Similarity=0.941 Sum_probs=80.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
.+||+++|++|||||||+++|+++.+...+.+|++.++....+.+ ++..+.+++||++|++++..++..+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999999888999998887777776 4678999999999999999999999999999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|||++|++|
T Consensus 82 v~D~~~~~S 90 (211)
T cd04111 82 VFDITNRES 90 (211)
T ss_pred EEECCCHHH
Confidence 999999764
No 53
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.85 E-value=3.4e-21 Score=135.50 Aligned_cols=87 Identities=32% Similarity=0.562 Sum_probs=79.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.+||+++|++|||||||+++++.+.+...+.||++..+ ...+.+++..+.+++|||+|+++|..+++.+++.+|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 37999999999999999999999999888999998766 45677888899999999999999999999999999999999
Q ss_pred EeCCCCCC
Q psy13826 166 IDVSHVKE 173 (173)
Q Consensus 166 ~d~t~~~S 173 (173)
||+++++|
T Consensus 80 ~d~~~~~s 87 (164)
T cd04175 80 YSITAQST 87 (164)
T ss_pred EECCCHHH
Confidence 99998753
No 54
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=5.1e-21 Score=134.77 Aligned_cols=89 Identities=47% Similarity=0.940 Sum_probs=82.2
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999999998888999888877788888888999999999999999999999999999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|||+++++|
T Consensus 82 v~d~~~~~s 90 (165)
T cd01864 82 AYDITRRSS 90 (165)
T ss_pred EEECcCHHH
Confidence 999999754
No 55
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.85 E-value=5.1e-21 Score=134.11 Aligned_cols=87 Identities=39% Similarity=0.752 Sum_probs=80.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC--CeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH--GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
+||+++|+++||||||+++++++.+...+.+|++.++....+.+. +..+.+++||++|+++|..+++.+++.++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999999999999988876677776 778999999999999999999999999999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|||+++++|
T Consensus 81 v~d~~~~~s 89 (162)
T cd04106 81 VFSTTDRES 89 (162)
T ss_pred EEECCCHHH
Confidence 999998764
No 56
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.85 E-value=7.1e-21 Score=134.82 Aligned_cols=88 Identities=48% Similarity=0.894 Sum_probs=81.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhhhcCCCEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AVTRSYYRGAAGALM 164 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~~il 164 (173)
.+||+++|++|||||||+++++.+.+...+.++++.++....+.+++..+.+++||++|++++. .+++.+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4799999999999999999999999998899999988888888889999999999999999887 578899999999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|||+++++|
T Consensus 82 v~d~~~~~s 90 (170)
T cd04115 82 VYDVTNMAS 90 (170)
T ss_pred EEECCCHHH
Confidence 999999864
No 57
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.85 E-value=4.7e-21 Score=138.13 Aligned_cols=85 Identities=31% Similarity=0.460 Sum_probs=78.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID 167 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d 167 (173)
||+++|++|||||||+++|.++.|...+.||++.++. ..+.+++..+.+.|||++|++.|..+++.+++.++++|+|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 8999999999999999999999999999999987764 456678888999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy13826 168 VSHVKE 173 (173)
Q Consensus 168 ~t~~~S 173 (173)
+++++|
T Consensus 81 v~~~~s 86 (189)
T cd04134 81 VDSPDS 86 (189)
T ss_pred CCCHHH
Confidence 999864
No 58
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.85 E-value=5.9e-21 Score=134.33 Aligned_cols=89 Identities=58% Similarity=1.003 Sum_probs=82.4
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|+++||||||+++++++.+...+.|+.+.++....+..++..+.+.+||++|++++..+++.+++.++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 45899999999999999999999999988899999988888888888888999999999999999999999999999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|||+++++|
T Consensus 82 v~d~~~~~s 90 (165)
T cd01868 82 VYDITKKQT 90 (165)
T ss_pred EEECcCHHH
Confidence 999998653
No 59
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=6.2e-21 Score=137.26 Aligned_cols=87 Identities=54% Similarity=0.917 Sum_probs=81.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||+++|.++.|...+.+|.+.++....+.+++..+.+++||++|++++..+++.+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998889999998887778888888999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 81 d~~~~~s 87 (188)
T cd04125 81 DVTDQES 87 (188)
T ss_pred ECcCHHH
Confidence 9998764
No 60
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.85 E-value=6.5e-21 Score=136.90 Aligned_cols=86 Identities=31% Similarity=0.516 Sum_probs=77.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
+||+++|++|||||||+++|+++.+...+.||++.++.. .+... +..+.+.+|||+|+++|..+++.+++.+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999999999999887744 34454 7789999999999999999999999999999999
Q ss_pred EeCCCCCC
Q psy13826 166 IDVSHVKE 173 (173)
Q Consensus 166 ~d~t~~~S 173 (173)
||+++++|
T Consensus 80 ~d~~~~~s 87 (187)
T cd04132 80 YAVDNPTS 87 (187)
T ss_pred EECCCHHH
Confidence 99999864
No 61
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.85 E-value=7.5e-21 Score=132.89 Aligned_cols=86 Identities=34% Similarity=0.561 Sum_probs=78.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.+||+++|++|||||||+++|+++.+...+.||.+..+ ...+.+++..+.+.+||++|++++..+++.+++.++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999999999999988665 45567888888999999999999999999999999999999
Q ss_pred EeCCCCC
Q psy13826 166 IDVSHVK 172 (173)
Q Consensus 166 ~d~t~~~ 172 (173)
||+++++
T Consensus 80 ~~~~~~~ 86 (162)
T cd04138 80 FAINSRK 86 (162)
T ss_pred EECCCHH
Confidence 9999865
No 62
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.85 E-value=9.8e-21 Score=132.69 Aligned_cols=87 Identities=69% Similarity=1.189 Sum_probs=81.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|+++||||||++++.++++...+.++.+.++....+.+++..+.+++||++|+++|..+++.+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999999889999998888888888888999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 81 d~~~~~s 87 (161)
T cd04113 81 DITNRTS 87 (161)
T ss_pred ECCCHHH
Confidence 9998753
No 63
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.85 E-value=1.2e-20 Score=136.25 Aligned_cols=87 Identities=34% Similarity=0.691 Sum_probs=80.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
+||+++|++|||||||+++|+++.|.. .+.+|++.++....+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999999875 6889999888777888999999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q psy13826 166 IDVSHVKE 173 (173)
Q Consensus 166 ~d~t~~~S 173 (173)
||+++++|
T Consensus 81 ~d~~~~~s 88 (193)
T cd04118 81 YDLTDSSS 88 (193)
T ss_pred EECCCHHH
Confidence 99998754
No 64
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.84 E-value=1.3e-20 Score=133.85 Aligned_cols=86 Identities=27% Similarity=0.463 Sum_probs=77.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+|++++|++|||||||+++|.++.|..++.||....+ ...+.+++..+.+++||++|+++|..+++.+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNF-SVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999999999999999875444 456778888899999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 80 d~~~~~s 86 (173)
T cd04130 80 SVVNPSS 86 (173)
T ss_pred ECCCHHH
Confidence 9999864
No 65
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.84 E-value=6.9e-21 Score=137.33 Aligned_cols=85 Identities=29% Similarity=0.522 Sum_probs=77.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID 167 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d 167 (173)
||+++|++|||||||+++|+.+.|...+.+|++..+ ...+.+++..+.+++|||+|+++|..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999999988999988665 3455678888999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy13826 168 VSHVKE 173 (173)
Q Consensus 168 ~t~~~S 173 (173)
+++++|
T Consensus 80 ~~~~~s 85 (190)
T cd04144 80 ITSRST 85 (190)
T ss_pred CCCHHH
Confidence 999764
No 66
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.84 E-value=7.7e-21 Score=142.24 Aligned_cols=86 Identities=23% Similarity=0.473 Sum_probs=78.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||+++|++++|...+.||++ ++....+.+++..+.++||||+|++.|..+++.++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999988999987 445667788899999999999999999999898999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 80 dv~~~~S 86 (247)
T cd04143 80 SLDNRES 86 (247)
T ss_pred eCCCHHH
Confidence 9999764
No 67
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.84 E-value=1e-20 Score=137.47 Aligned_cols=82 Identities=29% Similarity=0.567 Sum_probs=77.4
Q ss_pred EeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 92 IGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 92 ~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
+|++|||||||+++|+.+.|...+.||+|.++....+.++++.+.+.||||+|+++|..+++.||++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999989999999999888888899999999999999999999999999999999999999998
Q ss_pred CC
Q psy13826 172 KE 173 (173)
Q Consensus 172 ~S 173 (173)
+|
T Consensus 81 ~S 82 (200)
T smart00176 81 VT 82 (200)
T ss_pred HH
Confidence 64
No 68
>PLN03108 Rab family protein; Provisional
Probab=99.84 E-value=2.2e-20 Score=136.79 Aligned_cols=90 Identities=66% Similarity=1.135 Sum_probs=83.4
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
+..+||+++|++|||||||++++++.++...+.+|++.++....+.+++..+.+.+||++|++.+..+++.+++.+|++|
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45699999999999999999999999998888999999888888888999999999999999999999999999999999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
+|||+++++|
T Consensus 84 lv~D~~~~~s 93 (210)
T PLN03108 84 LVYDITRRET 93 (210)
T ss_pred EEEECCcHHH
Confidence 9999998764
No 69
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.84 E-value=2.4e-20 Score=130.59 Aligned_cols=87 Identities=34% Similarity=0.688 Sum_probs=80.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|+++||||||++++.+..+...+.++.+.++....+.+++..+.+++||++|++++..+++.+++.++++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888999998888888888888899999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 81 d~~~~~s 87 (161)
T cd01861 81 DITNRQS 87 (161)
T ss_pred ECcCHHH
Confidence 9998754
No 70
>PLN03118 Rab family protein; Provisional
Probab=99.83 E-value=4e-20 Score=135.47 Aligned_cols=92 Identities=49% Similarity=0.840 Sum_probs=82.3
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
......+||+++|++|||||||+++|+++.+ ..+.++.+.++....+.+++..+.+.+|||+|+++|..++..+++.+|
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 4455679999999999999999999999877 467889988887777788888899999999999999999999999999
Q ss_pred EEEEEEeCCCCCC
Q psy13826 161 GALMVIDVSHVKE 173 (173)
Q Consensus 161 ~~ilv~d~t~~~S 173 (173)
++|+|||+++++|
T Consensus 88 ~~vlv~D~~~~~s 100 (211)
T PLN03118 88 GIILVYDVTRRET 100 (211)
T ss_pred EEEEEEECCCHHH
Confidence 9999999998764
No 71
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.83 E-value=3.2e-20 Score=130.20 Aligned_cols=88 Identities=41% Similarity=0.775 Sum_probs=81.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.+||+++|+++||||+|+++++++++...+.++.+.++....+.+++..+.+.+||++|++++...++.+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999999888889999888888888999999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q psy13826 166 IDVSHVKE 173 (173)
Q Consensus 166 ~d~t~~~S 173 (173)
||+++++|
T Consensus 81 ~d~~~~~s 88 (163)
T cd01860 81 YDITSEES 88 (163)
T ss_pred EECcCHHH
Confidence 99998753
No 72
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=2.8e-20 Score=134.25 Aligned_cols=87 Identities=47% Similarity=0.935 Sum_probs=79.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
+||+++|++|||||||+++|.++++.. .+.+|++.++....+.+++..+.+.|||++|++++..++..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999999864 6788988888777778899999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q psy13826 166 IDVSHVKE 173 (173)
Q Consensus 166 ~d~t~~~S 173 (173)
||+++++|
T Consensus 81 ~D~~~~~s 88 (191)
T cd04112 81 YDITNKAS 88 (191)
T ss_pred EECCCHHH
Confidence 99998753
No 73
>KOG0393|consensus
Probab=99.83 E-value=4e-21 Score=136.85 Aligned_cols=88 Identities=28% Similarity=0.509 Sum_probs=81.9
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
..+|++++|+.+||||+|+..|..+.|+++|.||+-+++ ...+.++ ++.+.+.+|||+||+.|+.+++..|.++|+|+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 468999999999999999999999999999999999766 5567784 99999999999999999999999999999999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
+||++.+++|
T Consensus 82 ~cfsv~~p~S 91 (198)
T KOG0393|consen 82 LCFSVVSPES 91 (198)
T ss_pred EEEEcCChhh
Confidence 9999999986
No 74
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.83 E-value=3.1e-20 Score=131.69 Aligned_cols=84 Identities=31% Similarity=0.556 Sum_probs=76.4
Q ss_pred EEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeC
Q psy13826 89 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDV 168 (173)
Q Consensus 89 i~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~ 168 (173)
|+++|++|||||||+++|+++.|...+.++.+..+. ..+.+++..+.+.+|||+|++.|..+++.+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 589999999999999999999999999999876664 4567788999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy13826 169 SHVKE 173 (173)
Q Consensus 169 t~~~S 173 (173)
++++|
T Consensus 80 ~~~~s 84 (174)
T smart00174 80 DSPAS 84 (174)
T ss_pred CCHHH
Confidence 99864
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.83 E-value=3.7e-20 Score=130.05 Aligned_cols=87 Identities=26% Similarity=0.516 Sum_probs=77.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhC--CCCCCCCCceeeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
+||+++|++|||||||++++..+ .+..++.+|.+.++....+.++ +..+.+.+||++|++.+..+++.+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6888999999988876666664 57799999999999999999999999999999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
+|||+++++|
T Consensus 81 ~v~d~~~~~s 90 (164)
T cd04101 81 LVYDVSNKAS 90 (164)
T ss_pred EEEECcCHHH
Confidence 9999998753
No 76
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.83 E-value=3e-20 Score=130.54 Aligned_cols=86 Identities=38% Similarity=0.631 Sum_probs=77.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||+++++++.+...+.+|.+..+ ...+.+++..+.+++||++|++++..+++.+++.++++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999999988888887554 456677888999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 80 d~~~~~s 86 (164)
T smart00173 80 SITDRQS 86 (164)
T ss_pred ECCCHHH
Confidence 9998753
No 77
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.83 E-value=4.5e-20 Score=130.07 Aligned_cols=86 Identities=27% Similarity=0.425 Sum_probs=77.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||+++++++.|...+.||.+..+ ...+..+...+.+.+||++|+++|..++..+++.++++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999999888888887655 445566778899999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 81 d~~~~~s 87 (165)
T cd04140 81 SVTSKQS 87 (165)
T ss_pred ECCCHHH
Confidence 9999764
No 78
>KOG0081|consensus
Probab=99.83 E-value=4e-22 Score=135.52 Aligned_cols=93 Identities=40% Similarity=0.829 Sum_probs=85.4
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC---------CeEEEEEEEeCCCccccccc
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH---------GEKIKLQIWDTAGQERFRAV 151 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---------~~~~~l~i~D~~g~~~~~~~ 151 (173)
-.+++.+|.+.+|++|||||+++.+|..+.|......|+|+++..+.+-++ +.++.+++|||+|||+|+.+
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 457788999999999999999999999999999999999999988877663 45789999999999999999
Q ss_pred hhhhhcCCCEEEEEEeCCCCCC
Q psy13826 152 TRSYYRGAAGALMVIDVSHVKE 173 (173)
Q Consensus 152 ~~~~~~~~~~~ilv~d~t~~~S 173 (173)
...++++|-+++++||+|+.+|
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqS 105 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQS 105 (219)
T ss_pred HHHHHHhhccceEEEeccchHH
Confidence 9999999999999999999876
No 79
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=3.7e-19 Score=144.40 Aligned_cols=87 Identities=24% Similarity=0.284 Sum_probs=61.6
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc----------ccccch-
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----------RFRAVT- 152 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~- 152 (173)
..+||+++|.+|||||||++++++.++. ....+....+.....+.+++.. +.+|||+|.. .|..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999988752 2222333333334455666655 4699999953 333332
Q ss_pred hhhhcCCCEEEEEEeCCCCCC
Q psy13826 153 RSYYRGAAGALMVIDVSHVKE 173 (173)
Q Consensus 153 ~~~~~~~~~~ilv~d~t~~~S 173 (173)
..+++.+|++|+|||+++..|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s 308 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPIS 308 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCC
Confidence 236789999999999998643
No 80
>KOG0083|consensus
Probab=99.82 E-value=1.7e-21 Score=129.00 Aligned_cols=83 Identities=43% Similarity=0.885 Sum_probs=77.7
Q ss_pred EEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCC
Q psy13826 91 IIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169 (173)
Q Consensus 91 l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t 169 (173)
++|++++|||+|+-||..+.|.. +..+|+|+++..+.+..+++.+++++|||+|||+|+.....||++||+++++||++
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999999999888764 46789999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy13826 170 HVKE 173 (173)
Q Consensus 170 ~~~S 173 (173)
|+.|
T Consensus 82 nkas 85 (192)
T KOG0083|consen 82 NKAS 85 (192)
T ss_pred cchh
Confidence 9876
No 81
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.82 E-value=8.3e-20 Score=128.10 Aligned_cols=86 Identities=38% Similarity=0.600 Sum_probs=77.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.+||+++|++|||||||+++++++.+...+.++.+..+ .....+++..+.+++|||+|++++..+++.+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 47999999999999999999999999888888888655 44566888889999999999999999999999999999999
Q ss_pred EeCCCCC
Q psy13826 166 IDVSHVK 172 (173)
Q Consensus 166 ~d~t~~~ 172 (173)
||+++++
T Consensus 81 ~d~~~~~ 87 (164)
T cd04145 81 FSVTDRG 87 (164)
T ss_pred EECCCHH
Confidence 9999875
No 82
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.82 E-value=9.6e-20 Score=127.71 Aligned_cols=87 Identities=61% Similarity=1.029 Sum_probs=80.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++++..++..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999998888899998888888888888899999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 81 d~~~~~s 87 (164)
T smart00175 81 DITNRES 87 (164)
T ss_pred ECCCHHH
Confidence 9998753
No 83
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.82 E-value=1e-19 Score=128.55 Aligned_cols=86 Identities=45% Similarity=0.803 Sum_probs=79.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||++++.+..+...+.++.+.++....+.+.+..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888889988887777888889999999999999999999999999999999999
Q ss_pred eCCCCC
Q psy13826 167 DVSHVK 172 (173)
Q Consensus 167 d~t~~~ 172 (173)
|+++++
T Consensus 81 d~~~~~ 86 (172)
T cd01862 81 DVTNPK 86 (172)
T ss_pred ECCCHH
Confidence 998865
No 84
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.82 E-value=1.1e-19 Score=127.27 Aligned_cols=87 Identities=55% Similarity=0.967 Sum_probs=80.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+|++++|++|||||||++++.+..+...+.|+.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988888999998887777788888899999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 81 d~~~~~s 87 (161)
T cd01863 81 DVTRRDT 87 (161)
T ss_pred ECCCHHH
Confidence 9998753
No 85
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.82 E-value=1e-19 Score=128.58 Aligned_cols=86 Identities=34% Similarity=0.596 Sum_probs=78.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+++||++|+++|..+++.+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 7999999999999999999999999888999988655 566678888899999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|++++++
T Consensus 81 ~~~~~~s 87 (168)
T cd04177 81 SVTSEAS 87 (168)
T ss_pred ECCCHHH
Confidence 9998753
No 86
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.81 E-value=1.7e-19 Score=127.95 Aligned_cols=86 Identities=27% Similarity=0.458 Sum_probs=77.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||+++|++++|...+.|+.+..+ ...+.+++..+.+.+||++|++.|..+++.+++.++++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999999888888887554 446678888899999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 80 ~~~~~~s 86 (174)
T cd04135 80 SVVNPAS 86 (174)
T ss_pred ECCCHHH
Confidence 9999864
No 87
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.81 E-value=1.3e-19 Score=133.42 Aligned_cols=82 Identities=39% Similarity=0.727 Sum_probs=72.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|+++||||||+++|++++|.. +.||++.++....+ ..+.+.|||++|+++|..+++.+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999875 67888876644322 5678999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 76 Dvt~~~S 82 (220)
T cd04126 76 DVSNVQS 82 (220)
T ss_pred ECCCHHH
Confidence 9999864
No 88
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.81 E-value=1.3e-19 Score=131.58 Aligned_cols=87 Identities=21% Similarity=0.340 Sum_probs=74.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhhhcC
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV--------TRSYYRG 158 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--------~~~~~~~ 158 (173)
+||+++|++|||||||+++|++++|...+.||.+.++....+.++++.+.+++|||+|.+.+... ...+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999999999999987776666778899999999999997654321 2345789
Q ss_pred CCEEEEEEeCCCCCC
Q psy13826 159 AAGALMVIDVSHVKE 173 (173)
Q Consensus 159 ~~~~ilv~d~t~~~S 173 (173)
+|++|+|||+++++|
T Consensus 81 ad~iilv~D~~~~~S 95 (198)
T cd04142 81 SRAFILVYDICSPDS 95 (198)
T ss_pred CCEEEEEEECCCHHH
Confidence 999999999999864
No 89
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.81 E-value=1.3e-19 Score=128.67 Aligned_cols=86 Identities=31% Similarity=0.529 Sum_probs=77.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
.||+++|++|||||||+++|+++.|...+.||.+..+. ..+.+++..+.+.+|||+|++.|..+++.+++++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 58999999999999999999999999889999887664 35677888999999999999999998888999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 81 ~~~~~~s 87 (175)
T cd01870 81 SIDSPDS 87 (175)
T ss_pred ECCCHHH
Confidence 9998753
No 90
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.81 E-value=2.2e-19 Score=131.85 Aligned_cols=91 Identities=31% Similarity=0.496 Sum_probs=83.2
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 161 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 161 (173)
.....+|++++|++|||||||+++++.+.+...+.+|++.++....+..+++.+.+++||++|+++|..++..+++.+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 34456899999999999999999999999999999999999888777778899999999999999999999999999999
Q ss_pred EEEEEeCCCCC
Q psy13826 162 ALMVIDVSHVK 172 (173)
Q Consensus 162 ~ilv~d~t~~~ 172 (173)
+++|||+++++
T Consensus 85 ~i~v~d~~~~~ 95 (215)
T PTZ00132 85 AIIMFDVTSRI 95 (215)
T ss_pred EEEEEECcCHH
Confidence 99999999764
No 91
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.80 E-value=9.7e-20 Score=130.48 Aligned_cols=84 Identities=21% Similarity=0.493 Sum_probs=72.4
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|+++||||||++++..+++. .+.||++.++. .+ +...+.+++||++|++++..+++.+++++|++|+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EE--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 3479999999999999999999988886 47889887653 23 3346789999999999999999999999999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|||+++++|
T Consensus 91 V~D~s~~~s 99 (181)
T PLN00223 91 VVDSNDRDR 99 (181)
T ss_pred EEeCCcHHH
Confidence 999998764
No 92
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.80 E-value=1.4e-19 Score=127.06 Aligned_cols=82 Identities=23% Similarity=0.552 Sum_probs=70.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|+++||||||++++..+++. .+.||++.++. .+.. ..+.+.+||++|++++..+++.+++++|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999988887 47888886653 2333 4688999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 76 D~~~~~s 82 (159)
T cd04150 76 DSNDRER 82 (159)
T ss_pred eCCCHHH
Confidence 9998753
No 93
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.80 E-value=1.6e-19 Score=127.88 Aligned_cols=84 Identities=23% Similarity=0.513 Sum_probs=71.8
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|++|||||||++++..+++. .+.||++.++. .+. ...+.+++||++|++++..+++.+++++|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 3589999999999999999999988875 46788887653 222 356789999999999999999999999999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|||+++++|
T Consensus 83 v~D~t~~~s 91 (168)
T cd04149 83 VVDSADRDR 91 (168)
T ss_pred EEeCCchhh
Confidence 999999753
No 94
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.80 E-value=1.6e-19 Score=128.59 Aligned_cols=84 Identities=24% Similarity=0.504 Sum_probs=72.0
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|++|||||||++++..+++. .+.||++.++.. +.. ..+.+++||++|++++..+++.|+++++++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 3589999999999999999999988875 477898876643 233 45789999999999999999999999999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|||+++++|
T Consensus 87 v~D~t~~~s 95 (175)
T smart00177 87 VVDSNDRDR 95 (175)
T ss_pred EEECCCHHH
Confidence 999998753
No 95
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.80 E-value=5.1e-19 Score=124.09 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=68.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||+.+|+.+.|...+.|+. ..+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 589999999999999999999999988777654 344 45678899999999999999975 35778999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|++|++|
T Consensus 74 d~~~~~s 80 (158)
T cd04103 74 SLENEAS 80 (158)
T ss_pred ECCCHHH
Confidence 9999875
No 96
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.80 E-value=4.2e-19 Score=128.56 Aligned_cols=86 Identities=21% Similarity=0.351 Sum_probs=68.3
Q ss_pred eeEEEEEeCCCCChHHHHH-HHHhC-----CCCCCCCCceee-eeEEEE--------EEECCeEEEEEEEeCCCcccccc
Q psy13826 86 IFKYIIIGDMGVGKSCLLH-QFTEQ-----KFMPDCPHTIGV-EFGTRI--------IEVHGEKIKLQIWDTAGQERFRA 150 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~-~~~~~-----~~~~~~~~t~~~-~~~~~~--------~~~~~~~~~l~i~D~~g~~~~~~ 150 (173)
.+||+++|++|||||||+. ++.++ .|..++.||++. +..... +.++++.+.++||||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 66554 355678899863 322221 25688999999999999975 3
Q ss_pred chhhhhcCCCEEEEEEeCCCCCC
Q psy13826 151 VTRSYYRGAAGALMVIDVSHVKE 173 (173)
Q Consensus 151 ~~~~~~~~~~~~ilv~d~t~~~S 173 (173)
+.+.+|+++|++|+|||+++++|
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~S 102 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNS 102 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhH
Confidence 56678999999999999999875
No 97
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.80 E-value=5.5e-19 Score=123.42 Aligned_cols=87 Identities=38% Similarity=0.727 Sum_probs=78.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||+++++++.+...+.++.+..+....+...+..+.+.+||++|++.+..+++.+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999988777778777776667777788889999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 81 d~~~~~s 87 (162)
T cd04123 81 DITDADS 87 (162)
T ss_pred ECCCHHH
Confidence 9998753
No 98
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.80 E-value=1.6e-19 Score=127.32 Aligned_cols=80 Identities=20% Similarity=0.476 Sum_probs=71.7
Q ss_pred EEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeC
Q psy13826 89 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDV 168 (173)
Q Consensus 89 i~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~ 168 (173)
|+++|++|||||||+++|.++.+...+.||++.+. ..++...+.+.+||++|++++..+++.+++++|++|+|||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 79999999999999999999989888999998643 23455678999999999999999999999999999999999
Q ss_pred CCCC
Q psy13826 169 SHVK 172 (173)
Q Consensus 169 t~~~ 172 (173)
++++
T Consensus 78 t~~~ 81 (164)
T cd04162 78 ADSE 81 (164)
T ss_pred CCHH
Confidence 9874
No 99
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.79 E-value=2.6e-19 Score=128.37 Aligned_cols=83 Identities=24% Similarity=0.533 Sum_probs=71.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.+||+++|++|||||||++++..+++.. +.||++.++. .+. ...+.+++||++|+++++.+++.+++++|++|+|
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999999888865 6788886653 233 3557899999999999999999999999999999
Q ss_pred EeCCCCCC
Q psy13826 166 IDVSHVKE 173 (173)
Q Consensus 166 ~d~t~~~S 173 (173)
||+++++|
T Consensus 92 ~D~t~~~s 99 (182)
T PTZ00133 92 VDSNDRER 99 (182)
T ss_pred EeCCCHHH
Confidence 99998753
No 100
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=1.5e-18 Score=122.35 Aligned_cols=89 Identities=51% Similarity=0.958 Sum_probs=81.0
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+|++++|++|||||||++++.++.+...+.++++.++....+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45689999999999999999999998888888889988887777888888899999999999999998899999999999
Q ss_pred EEEeCCCCC
Q psy13826 164 MVIDVSHVK 172 (173)
Q Consensus 164 lv~d~t~~~ 172 (173)
+|||+++++
T Consensus 85 ~v~d~~~~~ 93 (169)
T cd04114 85 LTYDITCEE 93 (169)
T ss_pred EEEECcCHH
Confidence 999999864
No 101
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.79 E-value=4.7e-19 Score=127.06 Aligned_cols=86 Identities=24% Similarity=0.476 Sum_probs=73.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
.+||+++|++|||||||+++++.+++... .||.+.+.....+.. ++..+.+.+|||+|++++..+++.+++++|++|+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 47999999999999999999999988754 678876665544444 4467899999999999999999999999999999
Q ss_pred EEeCCCCC
Q psy13826 165 VIDVSHVK 172 (173)
Q Consensus 165 v~d~t~~~ 172 (173)
|||+++++
T Consensus 82 v~D~~~~~ 89 (183)
T cd04152 82 VVDSVDVE 89 (183)
T ss_pred EEECCCHH
Confidence 99999864
No 102
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.78 E-value=1.5e-18 Score=122.50 Aligned_cols=86 Identities=30% Similarity=0.570 Sum_probs=75.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||+++|.++.+...+.++....+ ......++..+.+++||++|++.+...++.+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999999888888877554 445567888999999999999999888888999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 80 d~~~~~s 86 (171)
T cd00157 80 SVDSPSS 86 (171)
T ss_pred ECCCHHH
Confidence 9998653
No 103
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.78 E-value=1.4e-18 Score=127.71 Aligned_cols=87 Identities=44% Similarity=0.725 Sum_probs=80.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.+||+++|++|||||||+++|.++.+...+.+|++..+...........+++.+|||+|+++|+.+++.|++.++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 38999999999999999999999999999999999888777776666689999999999999999999999999999999
Q ss_pred EeCCCCC
Q psy13826 166 IDVSHVK 172 (173)
Q Consensus 166 ~d~t~~~ 172 (173)
||.++++
T Consensus 85 ~d~~~~~ 91 (219)
T COG1100 85 YDSTLRE 91 (219)
T ss_pred Eecccch
Confidence 9999854
No 104
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.78 E-value=6.5e-19 Score=124.03 Aligned_cols=85 Identities=28% Similarity=0.509 Sum_probs=73.2
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc-ccchhhhhcCCCEEEEEE
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-RAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-~~~~~~~~~~~~~~ilv~ 166 (173)
||+++|++|||||||+++++++.+..++.++.+..+ ...+.++++.+.+++||++|++++ ......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999999999888888876554 455678889999999999999863 455678899999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 80 d~~~~~s 86 (165)
T cd04146 80 SITDRSS 86 (165)
T ss_pred ECCCHHH
Confidence 9999754
No 105
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.78 E-value=1.6e-18 Score=120.23 Aligned_cols=86 Identities=55% Similarity=0.991 Sum_probs=80.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|+++||||||++++.++.+...+.+|.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999999888899999888888888888899999999999999999999999999999999
Q ss_pred eCCCCC
Q psy13826 167 DVSHVK 172 (173)
Q Consensus 167 d~t~~~ 172 (173)
|+++++
T Consensus 81 d~~~~~ 86 (159)
T cd00154 81 DITNRE 86 (159)
T ss_pred ECCCHH
Confidence 999864
No 106
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.78 E-value=6.6e-18 Score=135.75 Aligned_cols=85 Identities=29% Similarity=0.279 Sum_probs=59.8
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccch----------
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT---------- 152 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~---------- 152 (173)
..+|++++|.+|||||||++++++.+. ......|..... ...+..++. .+.+|||+|..++....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~-~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSI-DIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcE-eEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 458999999999999999999998763 233333332222 233344444 67899999976543221
Q ss_pred -hhhhcCCCEEEEEEeCCCCC
Q psy13826 153 -RSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 153 -~~~~~~~~~~ilv~d~t~~~ 172 (173)
..+++.+|++|+|+|+++..
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~ 268 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGI 268 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCc
Confidence 23678999999999998764
No 107
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.78 E-value=1.3e-18 Score=128.40 Aligned_cols=85 Identities=25% Similarity=0.324 Sum_probs=73.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhc-CCCEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR-GAAGALM 164 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~-~~~~~il 164 (173)
+||+++|++|||||||+++|..+++. ..+.++.+.++....+.+++..+.+.+||++|++ ..+...+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999998887 7788887756667778888899999999999998 334556777 9999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|||++|++|
T Consensus 79 V~d~td~~S 87 (221)
T cd04148 79 VYSVTDRSS 87 (221)
T ss_pred EEECCCHHH
Confidence 999999764
No 108
>KOG0395|consensus
Probab=99.77 E-value=8.5e-19 Score=126.73 Aligned_cols=88 Identities=36% Similarity=0.563 Sum_probs=82.8
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+|++++|.+|||||+|+.+|..+.|..+|.||++..+ .+.+.+++..+.+.|+||+|++.|..+...+++.++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y-~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSY-RKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccc-eEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 358999999999999999999999999999999999655 7788899999999999999999999999999999999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
||+++|++|
T Consensus 81 Vysitd~~S 89 (196)
T KOG0395|consen 81 VYSITDRSS 89 (196)
T ss_pred EEECCCHHH
Confidence 999999876
No 109
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.77 E-value=2e-18 Score=125.24 Aligned_cols=84 Identities=26% Similarity=0.457 Sum_probs=75.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID 167 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d 167 (173)
||+++|++|||||||+++|+++.+...+.+|.+. .....+.+.+..+.+++||++|+..|..+++.+++.+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 6899999999999999999999998888888763 445567778888999999999999999999999999999999999
Q ss_pred CCCCC
Q psy13826 168 VSHVK 172 (173)
Q Consensus 168 ~t~~~ 172 (173)
+++++
T Consensus 80 ~~~~~ 84 (198)
T cd04147 80 VDDPE 84 (198)
T ss_pred CCCHH
Confidence 99864
No 110
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=7.2e-18 Score=132.41 Aligned_cols=117 Identities=24% Similarity=0.225 Sum_probs=81.0
Q ss_pred EEEeeccCcccchhhhhhhhhccc-cCCCCCc--ceeeEEEEEeCCCCChHHHHHHHHhCCCC--CCCCCceeeeeEEEE
Q psy13826 53 LRLVSTSQPITRKNLLWALVSKMS-SSGQYSY--SYIFKYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRI 127 (173)
Q Consensus 53 ~~~~s~~~~~~~k~l~~~~~~~~~-~~~~~~~--~~~~ki~l~G~~~vGKssl~~~~~~~~~~--~~~~~t~~~~~~~~~ 127 (173)
...+|..|+....++++.....++ ....+.. ...+|++++|.||||||||+|++++++-. .....|..+.+ ...
T Consensus 142 ~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I-~~~ 220 (444)
T COG1160 142 PVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSI-DIE 220 (444)
T ss_pred ceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccce-eee
Confidence 666788889999999999988874 1111222 25799999999999999999999988732 33333444333 334
Q ss_pred EEECCeEEEEEEEeCCCccc----------cccch-hhhhcCCCEEEEEEeCCCCC
Q psy13826 128 IEVHGEKIKLQIWDTAGQER----------FRAVT-RSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 128 ~~~~~~~~~l~i~D~~g~~~----------~~~~~-~~~~~~~~~~ilv~d~t~~~ 172 (173)
+..+++. +.+.||+|..+ |...+ ...+..+|++++|.|.+.+-
T Consensus 221 ~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~ 274 (444)
T COG1160 221 FERDGRK--YVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGI 274 (444)
T ss_pred EEECCeE--EEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCc
Confidence 4555665 45779999533 33222 23577899999999998753
No 111
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.76 E-value=4.1e-18 Score=119.28 Aligned_cols=85 Identities=35% Similarity=0.631 Sum_probs=77.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||+++++++++...+.++.+..+ ......++..+.+.+||++|++.+..++..+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999999988888887655 455677888999999999999999999999999999999999
Q ss_pred eCCCCC
Q psy13826 167 DVSHVK 172 (173)
Q Consensus 167 d~t~~~ 172 (173)
|+++++
T Consensus 80 d~~~~~ 85 (164)
T cd04139 80 SITDME 85 (164)
T ss_pred ECCCHH
Confidence 998865
No 112
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.76 E-value=2.1e-18 Score=122.10 Aligned_cols=81 Identities=27% Similarity=0.587 Sum_probs=69.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID 167 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d 167 (173)
||+++|+++||||||++++.++.+.. +.||++.++. .+ +...+.+.+||++|++++...++.+++.+|++++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~--~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TV--EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EE--EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999987764 7888886663 22 3346789999999999999999999999999999999
Q ss_pred CCCCCC
Q psy13826 168 VSHVKE 173 (173)
Q Consensus 168 ~t~~~S 173 (173)
+++++|
T Consensus 76 ~s~~~s 81 (169)
T cd04158 76 SSHRDR 81 (169)
T ss_pred CCcHHH
Confidence 998753
No 113
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.76 E-value=4.2e-18 Score=120.15 Aligned_cols=85 Identities=28% Similarity=0.395 Sum_probs=70.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+|++++|++|||||||+++|.++.|...++++.. .+ .....+++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999999999776554432 22 334456778899999999999988877788889999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 79 d~~~~~s 85 (166)
T cd01893 79 SVDRPST 85 (166)
T ss_pred ECCCHHH
Confidence 9998764
No 114
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.75 E-value=4.1e-18 Score=120.46 Aligned_cols=81 Identities=23% Similarity=0.424 Sum_probs=69.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID 167 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d 167 (173)
+|+++|++|||||||++++.++ +...+.||+|... ..+.. ..+.+++||++|++.+..+++.++++++++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 7778889998653 23333 45788999999999999999999999999999999
Q ss_pred CCCCCC
Q psy13826 168 VSHVKE 173 (173)
Q Consensus 168 ~t~~~S 173 (173)
++++++
T Consensus 76 ~s~~~s 81 (167)
T cd04161 76 SSDDDR 81 (167)
T ss_pred CCchhH
Confidence 998753
No 115
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.75 E-value=5.6e-18 Score=118.06 Aligned_cols=85 Identities=35% Similarity=0.554 Sum_probs=75.7
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID 167 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d 167 (173)
||+++|++|||||||+++++++.+...+.++.+ +.....+..++..+.+++||++|++.+..++..+++.++++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999999988888888887 4445666777788999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy13826 168 VSHVKE 173 (173)
Q Consensus 168 ~t~~~S 173 (173)
+++++|
T Consensus 80 ~~~~~s 85 (160)
T cd00876 80 ITDRES 85 (160)
T ss_pred CCCHHH
Confidence 998753
No 116
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.75 E-value=3.2e-18 Score=114.21 Aligned_cols=86 Identities=30% Similarity=0.577 Sum_probs=67.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCC--CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
||+++|++|||||||+++|++..+. ..+.++.+.++.............+++||++|++.+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999999876 22333344445444556677777799999999999888888889999999999
Q ss_pred EeCCCCCC
Q psy13826 166 IDVSHVKE 173 (173)
Q Consensus 166 ~d~t~~~S 173 (173)
||+++++|
T Consensus 81 ~D~s~~~s 88 (119)
T PF08477_consen 81 YDLSDPES 88 (119)
T ss_dssp EECCGHHH
T ss_pred EcCCChHH
Confidence 99998753
No 117
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.75 E-value=5e-17 Score=137.70 Aligned_cols=85 Identities=28% Similarity=0.367 Sum_probs=60.4
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc----------cccch
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----------FRAVT 152 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~ 152 (173)
..+||+++|++|||||||++++++.+. ..++.+|... .....+.+++.. +.+|||+|..+ |..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d-~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRD-PVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcC-cceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHH
Confidence 358999999999999999999999874 3444444433 333445566655 55899999632 22222
Q ss_pred -hhhhcCCCEEEEEEeCCCCC
Q psy13826 153 -RSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 153 -~~~~~~~~~~ilv~d~t~~~ 172 (173)
..+++.+|++++|+|+++..
T Consensus 526 ~~~~i~~advvilViDat~~~ 546 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPI 546 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCC
Confidence 23478999999999999864
No 118
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.75 E-value=3e-18 Score=119.95 Aligned_cols=81 Identities=21% Similarity=0.430 Sum_probs=68.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhCC-CCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQK-FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+|+++|++|||||||++++.+.. +...+.||++..... +....+.+.+||++|++++..+++.+++.+|++|+||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES----FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE----EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999999876 466778888855432 2235678999999999999999999999999999999
Q ss_pred eCCCCC
Q psy13826 167 DVSHVK 172 (173)
Q Consensus 167 d~t~~~ 172 (173)
|++++.
T Consensus 77 D~~~~~ 82 (162)
T cd04157 77 DSSDRL 82 (162)
T ss_pred eCCcHH
Confidence 999864
No 119
>KOG4252|consensus
Probab=99.74 E-value=6.5e-20 Score=127.14 Aligned_cols=95 Identities=37% Similarity=0.693 Sum_probs=88.7
Q ss_pred CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826 79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158 (173)
Q Consensus 79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~ 158 (173)
.....+..+|++++|..+|||+|+++|||.+-|...|..|+|.++....+.++...+.+.+||++||++|+.+...||++
T Consensus 13 ~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrg 92 (246)
T KOG4252|consen 13 DETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRG 92 (246)
T ss_pred CchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcc
Confidence 34566778999999999999999999999999999999999999988888888888899999999999999999999999
Q ss_pred CCEEEEEEeCCCCCC
Q psy13826 159 AAGALMVIDVSHVKE 173 (173)
Q Consensus 159 ~~~~ilv~d~t~~~S 173 (173)
|.+.+|||+.||+.|
T Consensus 93 aqa~vLVFSTTDr~S 107 (246)
T KOG4252|consen 93 AQASVLVFSTTDRYS 107 (246)
T ss_pred ccceEEEEecccHHH
Confidence 999999999999875
No 120
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.74 E-value=6.4e-18 Score=119.96 Aligned_cols=84 Identities=25% Similarity=0.491 Sum_probs=70.1
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||++++.++.+ ..+.||++... ..+.++ .+.+.+||++|++.+..++..+++.+|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 3458999999999999999999998754 45778887543 334444 477899999999999989999999999999
Q ss_pred EEEeCCCCC
Q psy13826 164 MVIDVSHVK 172 (173)
Q Consensus 164 lv~d~t~~~ 172 (173)
+|||+++++
T Consensus 87 ~v~d~~~~~ 95 (173)
T cd04154 87 WVVDSSDRL 95 (173)
T ss_pred EEEECCCHH
Confidence 999999874
No 121
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.73 E-value=1.4e-17 Score=118.81 Aligned_cols=85 Identities=35% Similarity=0.545 Sum_probs=75.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
.||+++|++|||||||++++.+..+...+.|+.+..+ ...+.+++..+.+++||++|++++..++..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999999888888887655 455667778889999999999999999999999999999999
Q ss_pred eCCCCC
Q psy13826 167 DVSHVK 172 (173)
Q Consensus 167 d~t~~~ 172 (173)
|+++.+
T Consensus 81 d~~~~~ 86 (180)
T cd04137 81 SVTSRK 86 (180)
T ss_pred ECCCHH
Confidence 999864
No 122
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.73 E-value=1.4e-17 Score=118.50 Aligned_cols=82 Identities=30% Similarity=0.538 Sum_probs=70.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.+||+++|++|||||||++++..+++.. +.||++.++.. +.. ..+.+.+||++|++.+...++.+++.+|++++|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 4799999999999999999999988875 67788866532 333 357899999999999999999999999999999
Q ss_pred EeCCCCC
Q psy13826 166 IDVSHVK 172 (173)
Q Consensus 166 ~d~t~~~ 172 (173)
||+++++
T Consensus 90 ~D~s~~~ 96 (174)
T cd04153 90 IDSTDRE 96 (174)
T ss_pred EECCCHH
Confidence 9999875
No 123
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=2.1e-16 Score=127.36 Aligned_cols=85 Identities=28% Similarity=0.297 Sum_probs=57.0
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc----------ch
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA----------VT 152 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~----------~~ 152 (173)
..++|+++|.+|||||||++++++.+. ......+..... ...+..++. .+.+|||+|..+... ..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~-~~~~~~~~~--~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSI-DTPFERDGQ--KYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEE-EEEEEECCe--eEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 458999999999999999999997652 222232322222 223334443 467899999643221 11
Q ss_pred -hhhhcCCCEEEEEEeCCCCC
Q psy13826 153 -RSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 153 -~~~~~~~~~~ilv~d~t~~~ 172 (173)
..+++.+|++|+|+|+++..
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~ 269 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGI 269 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCC
Confidence 23678999999999998754
No 124
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.72 E-value=1.3e-17 Score=116.69 Aligned_cols=80 Identities=25% Similarity=0.481 Sum_probs=67.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID 167 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d 167 (173)
||+++|+++||||+|++++..+.+.. +.||++.++. .+ +...+.+++||++|++.+..+++.+++.++++|+|||
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TV--TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EE--EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998887754 5678776553 22 2345789999999999999999999999999999999
Q ss_pred CCCCC
Q psy13826 168 VSHVK 172 (173)
Q Consensus 168 ~t~~~ 172 (173)
++++.
T Consensus 76 ~~~~~ 80 (158)
T cd04151 76 STDRD 80 (158)
T ss_pred CCCHH
Confidence 99863
No 125
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.72 E-value=6.7e-17 Score=116.25 Aligned_cols=86 Identities=30% Similarity=0.447 Sum_probs=75.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
.|++++|++|||||||++++..+.+...+.++.+..+. ..+.+++..+.+.+||++|++.+....+.+++.++++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 58999999999999999999999998888888876654 35567888899999999999999888888899999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 81 ~i~~~~s 87 (187)
T cd04129 81 AVDTPDS 87 (187)
T ss_pred ECCCHHH
Confidence 9998764
No 126
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.71 E-value=3.1e-17 Score=114.70 Aligned_cols=81 Identities=26% Similarity=0.552 Sum_probs=68.3
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID 167 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d 167 (173)
+|+++|++|||||||+++|.++++.. +.||.+.++. .+.. ...+.+.+||++|++.+...+..+++.+|++|+|||
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999998864 4678775543 3333 345789999999999999999999999999999999
Q ss_pred CCCCC
Q psy13826 168 VSHVK 172 (173)
Q Consensus 168 ~t~~~ 172 (173)
+++++
T Consensus 77 ~~~~~ 81 (160)
T cd04156 77 SSDEA 81 (160)
T ss_pred CCcHH
Confidence 99864
No 127
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.70 E-value=4.1e-17 Score=113.89 Aligned_cols=80 Identities=28% Similarity=0.588 Sum_probs=67.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID 167 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d 167 (173)
||+++|++|||||||++++++.. ...+.+|.+.+... +.++ .+.+.+||++|++.+...++.+++.++++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVET--VEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999988 44567788765533 3333 5689999999999999999999999999999999
Q ss_pred CCCCC
Q psy13826 168 VSHVK 172 (173)
Q Consensus 168 ~t~~~ 172 (173)
+++++
T Consensus 76 ~~~~~ 80 (158)
T cd00878 76 SSDRE 80 (158)
T ss_pred CCCHH
Confidence 99874
No 128
>KOG0073|consensus
Probab=99.70 E-value=5.1e-17 Score=111.14 Aligned_cols=85 Identities=22% Similarity=0.418 Sum_probs=73.7
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
.+..++|+++|..|+|||+++++|.+.. .+...||.|.+..+. ..+.+.+++||.+||...+..|+.||..+|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl----~~~~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTL----EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEE----EecceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 3458999999999999999999998765 677889999666543 33677899999999999999999999999999
Q ss_pred EEEEeCCCCC
Q psy13826 163 LMVIDVSHVK 172 (173)
Q Consensus 163 ilv~d~t~~~ 172 (173)
|+|+|.+|+.
T Consensus 88 IwvvDssD~~ 97 (185)
T KOG0073|consen 88 IWVVDSSDRM 97 (185)
T ss_pred EEEEECchHH
Confidence 9999998864
No 129
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.69 E-value=8.7e-17 Score=111.53 Aligned_cols=81 Identities=26% Similarity=0.535 Sum_probs=70.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID 167 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d 167 (173)
.|+++|++|||||||++++.+.++..++.||.+.++.. +..+ .+.+.+||++|++.+..++..+++.+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 37899999999999999999999999999999876643 2333 3789999999999999999999999999999999
Q ss_pred CCCCC
Q psy13826 168 VSHVK 172 (173)
Q Consensus 168 ~t~~~ 172 (173)
+++++
T Consensus 77 ~~~~~ 81 (159)
T cd04159 77 AADRT 81 (159)
T ss_pred CCCHH
Confidence 98754
No 130
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.69 E-value=8e-17 Score=115.61 Aligned_cols=84 Identities=19% Similarity=0.346 Sum_probs=68.7
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||++++.++.+. .+.||.+.... .+.+ ..+++.+||++|++.+..++..+++++++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSE--ELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 34589999999999999999999988764 35666665432 2233 3467899999999999999999999999999
Q ss_pred EEEeCCCCC
Q psy13826 164 MVIDVSHVK 172 (173)
Q Consensus 164 lv~d~t~~~ 172 (173)
+|+|+++++
T Consensus 90 ~vvD~~~~~ 98 (184)
T smart00178 90 YLVDAYDKE 98 (184)
T ss_pred EEEECCcHH
Confidence 999999874
No 131
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.68 E-value=9.6e-17 Score=114.36 Aligned_cols=84 Identities=33% Similarity=0.573 Sum_probs=71.4
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|..|+||||+++++..+++. .+.||.|.+.. .+..+ .+.+.+||.+|++.++.+|+.|+++++++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~--~i~~~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIE--EIKYK--GYSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEE--EEEET--TEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccc--eeeeC--cEEEEEEeccccccccccceeeccccceeE
Confidence 56799999999999999999999987654 37788886654 33443 457899999999999999999999999999
Q ss_pred EEEeCCCCC
Q psy13826 164 MVIDVSHVK 172 (173)
Q Consensus 164 lv~d~t~~~ 172 (173)
+|+|.+|++
T Consensus 87 fVvDssd~~ 95 (175)
T PF00025_consen 87 FVVDSSDPE 95 (175)
T ss_dssp EEEETTGGG
T ss_pred EEEecccce
Confidence 999999865
No 132
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.68 E-value=1.6e-16 Score=111.75 Aligned_cols=81 Identities=31% Similarity=0.524 Sum_probs=65.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhCC------CCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQK------FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 161 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 161 (173)
+|+++|++|||||||++++.+.. ....+.+|++.++.. +.++ ...+.+||++|++.+..++..+++.+++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGT--IEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 58999999999999999998642 234556777766533 3343 5688999999999999999999999999
Q ss_pred EEEEEeCCCCC
Q psy13826 162 ALMVIDVSHVK 172 (173)
Q Consensus 162 ~ilv~d~t~~~ 172 (173)
+++|||.++++
T Consensus 77 ~v~vvd~~~~~ 87 (167)
T cd04160 77 IIYVIDSTDRE 87 (167)
T ss_pred EEEEEECchHH
Confidence 99999998864
No 133
>KOG0070|consensus
Probab=99.68 E-value=5.5e-17 Score=113.27 Aligned_cols=84 Identities=24% Similarity=0.496 Sum_probs=74.7
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
....+|+++|..++||||+++++..+++... .||+|.++.... + +.+.+++||.+||++++.+|+.|+++.+++|
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~--y--kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVE--Y--KNISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEE--E--cceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 4568999999999999999999999998765 899997765433 3 4788999999999999999999999999999
Q ss_pred EEEeCCCCC
Q psy13826 164 MVIDVSHVK 172 (173)
Q Consensus 164 lv~d~t~~~ 172 (173)
+|.|.+|++
T Consensus 90 fVvDS~Dr~ 98 (181)
T KOG0070|consen 90 FVVDSSDRE 98 (181)
T ss_pred EEEeCCcHH
Confidence 999999986
No 134
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.66 E-value=3.6e-16 Score=112.45 Aligned_cols=83 Identities=20% Similarity=0.397 Sum_probs=69.4
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|++|||||||++++.++++. .+.||.+... ..+.+++ +.+.+||++|++.+..++..+++.++++++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988874 5777776543 3344443 678899999999998888999999999999
Q ss_pred EEeCCCCC
Q psy13826 165 VIDVSHVK 172 (173)
Q Consensus 165 v~d~t~~~ 172 (173)
|||+++++
T Consensus 93 V~D~~~~~ 100 (190)
T cd00879 93 LVDAADPE 100 (190)
T ss_pred EEECCcHH
Confidence 99999864
No 135
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.66 E-value=4.9e-16 Score=110.59 Aligned_cols=85 Identities=21% Similarity=0.374 Sum_probs=65.7
Q ss_pred EEEEEeCCCCChHHHHHHHHhCC-------CCCCCCC------ceeeeeEEEEEEE-----CCeEEEEEEEeCCCccccc
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQK-------FMPDCPH------TIGVEFGTRIIEV-----HGEKIKLQIWDTAGQERFR 149 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~-------~~~~~~~------t~~~~~~~~~~~~-----~~~~~~l~i~D~~g~~~~~ 149 (173)
+|+++|+++||||||+++|++.. +...+.+ +.|.++....+.+ +++.+.+.+|||+|+++|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999999742 2222323 2244444333333 6678899999999999999
Q ss_pred cchhhhhcCCCEEEEEEeCCCCC
Q psy13826 150 AVTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 150 ~~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
..+..+++.+|++|+|||+++..
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~ 104 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGV 104 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCc
Confidence 88899999999999999998753
No 136
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.65 E-value=3.5e-16 Score=113.14 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=69.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHh--CCCCCCC------------CCceeeeeEEEEEEECCeEEEEEEEeCCCccccccch
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTE--QKFMPDC------------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 152 (173)
-+|+++|+++||||||+++|+. +.|...+ .++.|.++......++.+.+.+.+|||+|+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999997 5555443 2345555555555666677889999999999999999
Q ss_pred hhhhcCCCEEEEEEeCCC
Q psy13826 153 RSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 153 ~~~~~~~~~~ilv~d~t~ 170 (173)
..+++.+|++++|||+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~ 100 (194)
T cd01891 83 ERVLSMVDGVLLLVDASE 100 (194)
T ss_pred HHHHHhcCEEEEEEECCC
Confidence 999999999999999987
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.64 E-value=1.1e-15 Score=106.93 Aligned_cols=82 Identities=18% Similarity=0.281 Sum_probs=60.7
Q ss_pred EEEEEeCCCCChHHHHHHHHhC---CCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ---KFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
.|+++|++|||||||++++.+. .+..++.++...+.....+.+.+ ...+.+|||+|+++|......+++.+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 5899999999999999999963 34333333333333333344432 3578999999999987666678899999999
Q ss_pred EEeCCC
Q psy13826 165 VIDVSH 170 (173)
Q Consensus 165 v~d~t~ 170 (173)
|||+++
T Consensus 81 V~d~~~ 86 (164)
T cd04171 81 VVAADE 86 (164)
T ss_pred EEECCC
Confidence 999986
No 138
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.64 E-value=2.2e-15 Score=103.98 Aligned_cols=86 Identities=37% Similarity=0.620 Sum_probs=76.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.+||+++|.+|+|||||++++....++..+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999998888888888888776677777778999999999999999999999999999999
Q ss_pred EeCCCC
Q psy13826 166 IDVSHV 171 (173)
Q Consensus 166 ~d~t~~ 171 (173)
+|+...
T Consensus 81 ~d~~~~ 86 (161)
T TIGR00231 81 FDIVIL 86 (161)
T ss_pred EEEeee
Confidence 998754
No 139
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.61 E-value=1.1e-15 Score=104.91 Aligned_cols=71 Identities=21% Similarity=0.311 Sum_probs=54.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc-----ccccchhhhhcCCCEE
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE-----RFRAVTRSYYRGAAGA 162 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~-----~~~~~~~~~~~~~~~~ 162 (173)
||+++|++|||||||+++|.+..+ .+.+|.+.++. . .+|||+|+. .+..+.+ .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEc-------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 899999999999999999998865 34555543331 1 589999972 3444433 47899999
Q ss_pred EEEEeCCCCCC
Q psy13826 163 LMVIDVSHVKE 173 (173)
Q Consensus 163 ilv~d~t~~~S 173 (173)
|+|||+++++|
T Consensus 67 ilv~d~~~~~s 77 (142)
T TIGR02528 67 ALVQSATDPES 77 (142)
T ss_pred EEEecCCCCCc
Confidence 99999999875
No 140
>KOG1673|consensus
Probab=99.61 E-value=8.4e-16 Score=104.45 Aligned_cols=91 Identities=23% Similarity=0.504 Sum_probs=85.6
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 161 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 161 (173)
...-.+||-++||+.+|||||+-.|.++++.+++..+.|.++..+.+.+.+..+.+.|||.+|++++..+.+....++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 44567999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCC
Q psy13826 162 ALMVIDVSHVK 172 (173)
Q Consensus 162 ~ilv~d~t~~~ 172 (173)
++++||+|.++
T Consensus 96 IlFmFDLt~r~ 106 (205)
T KOG1673|consen 96 ILFMFDLTRRS 106 (205)
T ss_pred EEEEEecCchH
Confidence 99999999874
No 141
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.60 E-value=4.2e-15 Score=105.20 Aligned_cols=83 Identities=27% Similarity=0.479 Sum_probs=68.0
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+|++++|++|||||||++++.+..+. .+.+|.|.+.. .+..++ ..+.+||++|+..+...+..+++.++++++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 3689999999999999999999987664 45677775443 333443 578899999999888888899999999999
Q ss_pred EEeCCCCC
Q psy13826 165 VIDVSHVK 172 (173)
Q Consensus 165 v~d~t~~~ 172 (173)
|||+++++
T Consensus 88 v~D~~~~~ 95 (173)
T cd04155 88 VIDSADKK 95 (173)
T ss_pred EEeCCCHH
Confidence 99998753
No 142
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.58 E-value=1.1e-14 Score=102.46 Aligned_cols=84 Identities=17% Similarity=0.198 Sum_probs=65.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
.|+++|++|||||||++++...++...+.++...+.....+..+ .....+.+|||+|++.|..++..+++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999988776544433333322333332 13567899999999999888888999999999999
Q ss_pred eCCCC
Q psy13826 167 DVSHV 171 (173)
Q Consensus 167 d~t~~ 171 (173)
|+++.
T Consensus 82 d~~~~ 86 (168)
T cd01887 82 AADDG 86 (168)
T ss_pred ECCCC
Confidence 99874
No 143
>KOG0075|consensus
Probab=99.58 E-value=1.2e-15 Score=102.77 Aligned_cols=85 Identities=24% Similarity=0.515 Sum_probs=76.7
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
....+.++|..++|||||++..+.+++.+..-||.|.+. .++....+.+.+||.+||++|+.+|+.|++.++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 457899999999999999999999999999999999654 3466778889999999999999999999999999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|+|..+++.
T Consensus 95 ~VDaad~~k 103 (186)
T KOG0075|consen 95 VVDAADPDK 103 (186)
T ss_pred EeecCCccc
Confidence 999999863
No 144
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.58 E-value=9.8e-15 Score=106.39 Aligned_cols=83 Identities=19% Similarity=0.383 Sum_probs=65.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC-CEEEEEE
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA-AGALMVI 166 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~-~~~ilv~ 166 (173)
+|+++|+++||||+|+++|..+++...+.++ ..+.........++...+.+||+||+++++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999887766544 2233222222224457799999999999988888899999 9999999
Q ss_pred eCCCC
Q psy13826 167 DVSHV 171 (173)
Q Consensus 167 d~t~~ 171 (173)
|.++.
T Consensus 81 D~~~~ 85 (203)
T cd04105 81 DSATF 85 (203)
T ss_pred ECccc
Confidence 99886
No 145
>KOG0096|consensus
Probab=99.58 E-value=7.5e-15 Score=102.86 Aligned_cols=88 Identities=30% Similarity=0.608 Sum_probs=81.2
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+|++++|+.|.|||+++++++.++|...+.+|+|.+.+.....-+...+++..|||+|+|.+..+...||-.+.|.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 46799999999999999999999999999999999999998777666666799999999999999999999999999999
Q ss_pred EEEeCCCC
Q psy13826 164 MVIDVSHV 171 (173)
Q Consensus 164 lv~d~t~~ 171 (173)
++||++.+
T Consensus 88 imFdVtsr 95 (216)
T KOG0096|consen 88 IMFDVTSR 95 (216)
T ss_pred EEeeeeeh
Confidence 99999853
No 146
>KOG0071|consensus
Probab=99.55 E-value=2.8e-14 Score=95.47 Aligned_cols=82 Identities=24% Similarity=0.509 Sum_probs=71.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.++|+++|..++||||++..++-+.. ....||+|.++.+.. .+.+.+.+||.+|+++.+.+|++||....++|||
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVt----ykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEE----eeeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 68999999999999999999998764 456789997765533 3677899999999999999999999999999999
Q ss_pred EeCCCCC
Q psy13826 166 IDVSHVK 172 (173)
Q Consensus 166 ~d~t~~~ 172 (173)
.|..+++
T Consensus 92 ~Dsa~~d 98 (180)
T KOG0071|consen 92 VDSADRD 98 (180)
T ss_pred Eeccchh
Confidence 9998764
No 147
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.51 E-value=1.1e-13 Score=98.86 Aligned_cols=89 Identities=22% Similarity=0.347 Sum_probs=64.2
Q ss_pred CCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc----------cccc
Q psy13826 80 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ----------ERFR 149 (173)
Q Consensus 80 ~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~----------~~~~ 149 (173)
+.+.+..++|+++|++|+|||||++++++..+...+.++.+.+.....+..++ .+.+|||+|. +.+.
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence 34456788999999999999999999999876665666666544443333332 5889999994 2334
Q ss_pred cchhhhhcC---CCEEEEEEeCCCC
Q psy13826 150 AVTRSYYRG---AAGALMVIDVSHV 171 (173)
Q Consensus 150 ~~~~~~~~~---~~~~ilv~d~t~~ 171 (173)
.+...|++. ++++++|+|.+++
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~ 113 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHP 113 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCC
Confidence 444556654 5799999999874
No 148
>KOG0074|consensus
Probab=99.49 E-value=1.8e-13 Score=91.74 Aligned_cols=84 Identities=24% Similarity=0.443 Sum_probs=71.0
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+|+.++|-.++|||+|++++.... +....||.|.+. +.+..+ ..+.|.+||.+||...+.+|..||.+.|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~GFn~--k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNGFNT--KKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCC-hhhccccCCcce--EEEeec-CcEEEEEEecCCccccchhhhhhhhccceEE
Confidence 668999999999999999999998765 445667888544 444444 3578999999999999999999999999999
Q ss_pred EEEeCCCC
Q psy13826 164 MVIDVSHV 171 (173)
Q Consensus 164 lv~d~t~~ 171 (173)
+|.|.+|+
T Consensus 91 yVIDS~D~ 98 (185)
T KOG0074|consen 91 YVIDSTDE 98 (185)
T ss_pred EEEeCCch
Confidence 99998875
No 149
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.49 E-value=1.3e-13 Score=95.83 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=59.8
Q ss_pred EEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhhhc--CCCEE
Q psy13826 91 IIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA------VTRSYYR--GAAGA 162 (173)
Q Consensus 91 l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~------~~~~~~~--~~~~~ 162 (173)
++|++|||||||++++++..+.....+....+.....+.+++ ..+.+|||||+..+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 579999999999999998865444444444444445556655 4688999999987664 3566665 89999
Q ss_pred EEEEeCCCCC
Q psy13826 163 LMVIDVSHVK 172 (173)
Q Consensus 163 ilv~d~t~~~ 172 (173)
++|+|.++++
T Consensus 79 i~v~d~~~~~ 88 (158)
T cd01879 79 VNVVDATNLE 88 (158)
T ss_pred EEEeeCCcch
Confidence 9999998764
No 150
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.49 E-value=1.8e-13 Score=98.70 Aligned_cols=90 Identities=27% Similarity=0.357 Sum_probs=65.4
Q ss_pred CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc----------ccc
Q psy13826 79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ----------ERF 148 (173)
Q Consensus 79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~----------~~~ 148 (173)
++...+..++|+++|++|||||||++++++.++...+.++.+.+........ ...+.+|||+|. +.+
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~ 93 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKW 93 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHH
Confidence 3445557889999999999999999999998776677777765544333332 357899999994 344
Q ss_pred ccchhhhhcCC---CEEEEEEeCCCC
Q psy13826 149 RAVTRSYYRGA---AGALMVIDVSHV 171 (173)
Q Consensus 149 ~~~~~~~~~~~---~~~ilv~d~t~~ 171 (173)
..+...+++.+ +++++|+|.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~v~d~~~~ 119 (196)
T PRK00454 94 QKLIEEYLRTRENLKGVVLLIDSRHP 119 (196)
T ss_pred HHHHHHHHHhCccceEEEEEEecCCC
Confidence 44555666654 578888998764
No 151
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.49 E-value=3.3e-13 Score=108.68 Aligned_cols=90 Identities=26% Similarity=0.294 Sum_probs=66.2
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCC--CCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc-------
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQK--FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV------- 151 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~------- 151 (173)
......+||+++|++|||||||++++++.. +...++.|. .++....+.+++. .+.+|||+|+..+...
T Consensus 198 ~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtT-rd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~ 274 (442)
T TIGR00450 198 EKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTT-RDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIE 274 (442)
T ss_pred HHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcE-EEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHH
Confidence 344567899999999999999999999875 344454443 3444555566654 4689999998654422
Q ss_pred -hhhhhcCCCEEEEEEeCCCCCC
Q psy13826 152 -TRSYYRGAAGALMVIDVSHVKE 173 (173)
Q Consensus 152 -~~~~~~~~~~~ilv~d~t~~~S 173 (173)
...+++.+|++++|||++++.+
T Consensus 275 ~~~~~~~~aD~il~V~D~s~~~s 297 (442)
T TIGR00450 275 KSFKAIKQADLVIYVLDASQPLT 297 (442)
T ss_pred HHHHHHhhCCEEEEEEECCCCCC
Confidence 2357899999999999998764
No 152
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.48 E-value=1.6e-13 Score=99.79 Aligned_cols=85 Identities=26% Similarity=0.252 Sum_probs=58.3
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCC--CCCceeeeeEEEEEEECCeEEEEEEEeCCCccc---------cccch
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD--CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER---------FRAVT 152 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~---------~~~~~ 152 (173)
...++|+++|++|||||||++++++.++... +.+|.. .....+.+++. ..+.+|||+|... +...+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLD--PTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecc--ceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH
Confidence 4568999999999999999999999874332 223332 22333344332 3688999999732 11111
Q ss_pred hhhhcCCCEEEEEEeCCCCC
Q psy13826 153 RSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 153 ~~~~~~~~~~ilv~d~t~~~ 172 (173)
..+..+|++++|+|+++++
T Consensus 116 -~~~~~~d~ii~v~D~~~~~ 134 (204)
T cd01878 116 -EEVAEADLLLHVVDASDPD 134 (204)
T ss_pred -HHHhcCCeEEEEEECCCCC
Confidence 2367899999999999875
No 153
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.48 E-value=1.3e-13 Score=94.00 Aligned_cols=81 Identities=51% Similarity=0.916 Sum_probs=68.4
Q ss_pred EEeCCCCChHHHHHHHHhCCC-CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCC
Q psy13826 91 IIGDMGVGKSCLLHQFTEQKF-MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169 (173)
Q Consensus 91 l~G~~~vGKssl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t 169 (173)
++|++|+|||||++++++... .....++. .+..............+.+||++|+..+......+++.++++++|||++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 579999999999999999877 55566666 6666666666677889999999999988877788999999999999999
Q ss_pred CCC
Q psy13826 170 HVK 172 (173)
Q Consensus 170 ~~~ 172 (173)
++.
T Consensus 80 ~~~ 82 (157)
T cd00882 80 DRE 82 (157)
T ss_pred CHH
Confidence 864
No 154
>PRK04213 GTP-binding protein; Provisional
Probab=99.47 E-value=1.2e-13 Score=100.20 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=58.4
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCC-----------ccccccchh
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG-----------QERFRAVTR 153 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g-----------~~~~~~~~~ 153 (173)
..++|+++|++|||||||++++.+..+...+.|+. ++....+... .+.+|||+| +++++..+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV--TRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCce--eeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 45799999999999999999999988765555543 3333333332 588999999 567777666
Q ss_pred hhhc-C---CCEEEEEEeCCC
Q psy13826 154 SYYR-G---AAGALMVIDVSH 170 (173)
Q Consensus 154 ~~~~-~---~~~~ilv~d~t~ 170 (173)
.+++ . ++++++|+|.++
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~ 102 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKS 102 (201)
T ss_pred HHHHhhhhhheEEEEEEeCcc
Confidence 6664 3 467788888754
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.47 E-value=1.8e-13 Score=111.40 Aligned_cols=85 Identities=20% Similarity=0.222 Sum_probs=60.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhhhh
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--------FRAVTRSYY 156 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~--------~~~~~~~~~ 156 (173)
..+|+++|++|||||||++++++..+.. ...+.+..+.....+..++. .+.+|||+|.+. +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 4799999999999999999999876421 22233322333333444444 578999999763 233455678
Q ss_pred cCCCEEEEEEeCCCCC
Q psy13826 157 RGAAGALMVIDVSHVK 172 (173)
Q Consensus 157 ~~~~~~ilv~d~t~~~ 172 (173)
+.||++|+|||+++..
T Consensus 116 ~~aD~il~VvD~~~~~ 131 (472)
T PRK03003 116 RTADAVLFVVDATVGA 131 (472)
T ss_pred HhCCEEEEEEECCCCC
Confidence 9999999999999864
No 156
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.46 E-value=2.5e-13 Score=95.67 Aligned_cols=81 Identities=23% Similarity=0.251 Sum_probs=53.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCC-CCC-CceeeeeEEEEEEECCeEEEEEEEeCCCcc----ccccchhhhhc---C
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMP-DCP-HTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----RFRAVTRSYYR---G 158 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~-~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----~~~~~~~~~~~---~ 158 (173)
.|+++|++|||||||++++.+.+... .+. +|.... ...+.+++ ...+.+|||||+. ....+...+++ .
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~--~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPN--LGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCc--ceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence 58999999999999999999765321 111 121111 11222333 2478999999963 22234444444 5
Q ss_pred CCEEEEEEeCCCC
Q psy13826 159 AAGALMVIDVSHV 171 (173)
Q Consensus 159 ~~~~ilv~d~t~~ 171 (173)
+|++++|+|++++
T Consensus 79 ~d~vi~v~D~~~~ 91 (170)
T cd01898 79 TRLLLHVIDLSGD 91 (170)
T ss_pred CCEEEEEEecCCC
Confidence 9999999999987
No 157
>PTZ00099 rab6; Provisional
Probab=99.45 E-value=2.5e-13 Score=96.85 Aligned_cols=65 Identities=37% Similarity=0.709 Sum_probs=60.1
Q ss_pred CCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCCCC
Q psy13826 109 QKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVKE 173 (173)
Q Consensus 109 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~S 173 (173)
+.|.+++.||+|.++....+.+++..+.+.||||+|++++..+++.++++||++|+|||+++++|
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~s 67 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQS 67 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHH
Confidence 46888899999999988888899999999999999999999999999999999999999999764
No 158
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.44 E-value=3.5e-13 Score=105.64 Aligned_cols=84 Identities=25% Similarity=0.245 Sum_probs=59.6
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCC--CCceeeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccchh
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC--PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE---------RFRAVTR 153 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~---------~~~~~~~ 153 (173)
..++|+++|.+|||||||++++++.++.... .+|. +.....+.+.+. ..+.+|||+|.. .|...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~--d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl- 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATL--DPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL- 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCcccc--CCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-
Confidence 4589999999999999999999998753222 2233 233445555332 368899999972 222222
Q ss_pred hhhcCCCEEEEEEeCCCCC
Q psy13826 154 SYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 154 ~~~~~~~~~ilv~d~t~~~ 172 (173)
..+++||++++|||++++.
T Consensus 264 e~~~~ADlil~VvD~s~~~ 282 (351)
T TIGR03156 264 EEVREADLLLHVVDASDPD 282 (351)
T ss_pred HHHHhCCEEEEEEECCCCc
Confidence 2478999999999999875
No 159
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.44 E-value=5.5e-13 Score=95.26 Aligned_cols=85 Identities=19% Similarity=0.231 Sum_probs=62.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCce--------------eeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTI--------------GVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTR 153 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 153 (173)
+|+++|++|+|||||++++++........++. +.+.......+......+.+||++|+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 48999999999999999999887665432211 1111111222333356789999999998888888
Q ss_pred hhhcCCCEEEEEEeCCCCC
Q psy13826 154 SYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 154 ~~~~~~~~~ilv~d~t~~~ 172 (173)
.+++.+|++++|+|.++..
T Consensus 81 ~~~~~~d~~i~v~d~~~~~ 99 (189)
T cd00881 81 RGLSVSDGAILVVDANEGV 99 (189)
T ss_pred HHHHhcCEEEEEEECCCCC
Confidence 8999999999999998753
No 160
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.43 E-value=1.1e-12 Score=92.35 Aligned_cols=81 Identities=22% Similarity=0.165 Sum_probs=52.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCC--ceeeeeEEEEEEECCeEEEEEEEeCCCcccccc---------chhhhh
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPH--TIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA---------VTRSYY 156 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~---------~~~~~~ 156 (173)
+|+++|++|||||||++++.+..+.....+ |..... . ......+.+.+|||+|+..... ......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~--~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 77 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFV--G--HFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALA 77 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeE--E--EEccCceEEEEEECCCcCCccccCCchHHHHHHHHHH
Confidence 799999999999999999999876432211 222211 1 1223457899999999842110 011112
Q ss_pred cCCCEEEEEEeCCCCC
Q psy13826 157 RGAAGALMVIDVSHVK 172 (173)
Q Consensus 157 ~~~~~~ilv~d~t~~~ 172 (173)
..+|++|+|+|+++++
T Consensus 78 ~~~d~~l~v~d~~~~~ 93 (168)
T cd01897 78 HLRAAVLFLFDPSETC 93 (168)
T ss_pred hccCcEEEEEeCCccc
Confidence 3368999999999864
No 161
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.43 E-value=7.6e-13 Score=110.05 Aligned_cols=86 Identities=23% Similarity=0.380 Sum_probs=67.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCC-------CCCCCCC------ceeeeeEEEEEEE-----CCeEEEEEEEeCCCccc
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQK-------FMPDCPH------TIGVEFGTRIIEV-----HGEKIKLQIWDTAGQER 147 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~-------~~~~~~~------t~~~~~~~~~~~~-----~~~~~~l~i~D~~g~~~ 147 (173)
.-+++++|+.++|||||+++|+... +...+.. +.|.++....+.+ ++..+.+.+|||||+++
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998752 2222222 2366555444433 46678999999999999
Q ss_pred cccchhhhhcCCCEEEEEEeCCCC
Q psy13826 148 FRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 148 ~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
|...+..+++.+|++|+|||+++.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g 106 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQG 106 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCC
Confidence 998889999999999999999874
No 162
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.42 E-value=1.3e-12 Score=90.53 Aligned_cols=84 Identities=27% Similarity=0.331 Sum_probs=58.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCC--CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhhh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV--------TRSYY 156 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--------~~~~~ 156 (173)
++|+++|++|+|||||++++.+.... .... ....+.....+..+ ...+.+|||+|...+... ...++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 78 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIA-GTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAI 78 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCC-CCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence 58999999999999999999987642 2222 22222323333333 356789999997655321 23467
Q ss_pred cCCCEEEEEEeCCCCCC
Q psy13826 157 RGAAGALMVIDVSHVKE 173 (173)
Q Consensus 157 ~~~~~~ilv~d~t~~~S 173 (173)
..+|++++|+|++++++
T Consensus 79 ~~~~~~v~v~d~~~~~~ 95 (157)
T cd04164 79 EEADLVLFVIDASRGLD 95 (157)
T ss_pred hhCCEEEEEEECCCCCC
Confidence 79999999999998653
No 163
>PRK15494 era GTPase Era; Provisional
Probab=99.41 E-value=8.8e-13 Score=103.08 Aligned_cols=84 Identities=24% Similarity=0.290 Sum_probs=57.7
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceee--eeEEEEEEECCeEEEEEEEeCCCcc-ccccchh-------
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGV--EFGTRIIEVHGEKIKLQIWDTAGQE-RFRAVTR------- 153 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~D~~g~~-~~~~~~~------- 153 (173)
+..++|+++|++|||||||+++|++..+.. ..+..+. +.....+..++ .++.+|||||+. .+..+..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i-vs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI-VTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceee-ccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 456899999999999999999999887642 1222221 12233344444 357899999984 3333322
Q ss_pred hhhcCCCEEEEEEeCCC
Q psy13826 154 SYYRGAAGALMVIDVSH 170 (173)
Q Consensus 154 ~~~~~~~~~ilv~d~t~ 170 (173)
..++++|++++|+|.++
T Consensus 127 ~~l~~aDvil~VvD~~~ 143 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK 143 (339)
T ss_pred HHhhhCCEEEEEEECCC
Confidence 24679999999999765
No 164
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.41 E-value=1.7e-12 Score=107.64 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=68.5
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
....+|+++|+.++|||||++++.+.++.....+.+..+.....+..++.. .+.+|||||++.|..++...+..+|++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 355789999999999999999999988776555444444434444443332 6889999999999999988999999999
Q ss_pred EEEeCCC
Q psy13826 164 MVIDVSH 170 (173)
Q Consensus 164 lv~d~t~ 170 (173)
+|||+++
T Consensus 164 LVVda~d 170 (587)
T TIGR00487 164 LVVAADD 170 (587)
T ss_pred EEEECCC
Confidence 9999886
No 165
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.40 E-value=1e-12 Score=96.40 Aligned_cols=85 Identities=25% Similarity=0.340 Sum_probs=62.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCC-----------------CCceeeeeEEEEEEE-----CCeEEEEEEEeCCCc
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDC-----------------PHTIGVEFGTRIIEV-----HGEKIKLQIWDTAGQ 145 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~-----------------~~t~~~~~~~~~~~~-----~~~~~~l~i~D~~g~ 145 (173)
+|+++|..++|||||+.+++........ ....+.++....+.+ +++.+.+.+|||+|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999976543210 111223322222222 356789999999999
Q ss_pred cccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826 146 ERFRAVTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 146 ~~~~~~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
++|......+++.+|++|+|+|+++..
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~ 108 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGV 108 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCC
Confidence 999877888899999999999998653
No 166
>KOG3883|consensus
Probab=99.40 E-value=9.6e-13 Score=89.44 Aligned_cols=89 Identities=21% Similarity=0.325 Sum_probs=72.4
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCC--CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc-ccchhhhhcCCCE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-RAVTRSYYRGAAG 161 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-~~~~~~~~~~~~~ 161 (173)
...|++++|..+||||+++.+++.++-. .++.||+++.|....-.-.+.+-.+.++||+|...+ ..+-++|+.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 4579999999999999999999977643 457788887665444333455667999999998877 4677889999999
Q ss_pred EEEEEeCCCCCC
Q psy13826 162 ALMVIDVSHVKE 173 (173)
Q Consensus 162 ~ilv~d~t~~~S 173 (173)
++||||..|++|
T Consensus 88 fVLVYs~~d~eS 99 (198)
T KOG3883|consen 88 FVLVYSPMDPES 99 (198)
T ss_pred EEEEecCCCHHH
Confidence 999999999886
No 167
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.40 E-value=2e-12 Score=104.48 Aligned_cols=86 Identities=29% Similarity=0.325 Sum_probs=62.4
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhh
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV--------TRS 154 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--------~~~ 154 (173)
..+||+++|.+|||||||++++++.+. ......|. .++....+.+++ ..+.+|||+|.+.+... ...
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT-~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~ 290 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTT-RDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSRE 290 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcc-cccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 458999999999999999999998763 33333333 233344455555 45789999998755432 224
Q ss_pred hhcCCCEEEEEEeCCCCCC
Q psy13826 155 YYRGAAGALMVIDVSHVKE 173 (173)
Q Consensus 155 ~~~~~~~~ilv~d~t~~~S 173 (173)
+++.+|++++|||++++.+
T Consensus 291 ~~~~aD~il~VvD~s~~~s 309 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLT 309 (449)
T ss_pred HHHhCCEEEEEecCCCCCC
Confidence 6889999999999998753
No 168
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.38 E-value=2.7e-12 Score=103.58 Aligned_cols=82 Identities=26% Similarity=0.244 Sum_probs=59.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhhhh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--------FRAVTRSYY 156 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~--------~~~~~~~~~ 156 (173)
++|+++|.+|||||||++++++... ...+.. ...+.....+.+++ ..+.+|||+|++. +......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~-~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPG-VTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCC-CcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 5899999999999999999998763 233332 22223333444554 6789999999876 222334578
Q ss_pred cCCCEEEEEEeCCCC
Q psy13826 157 RGAAGALMVIDVSHV 171 (173)
Q Consensus 157 ~~~~~~ilv~d~t~~ 171 (173)
+.+|++|+|+|.++.
T Consensus 79 ~~ad~il~vvd~~~~ 93 (435)
T PRK00093 79 EEADVILFVVDGRAG 93 (435)
T ss_pred HhCCEEEEEEECCCC
Confidence 899999999999874
No 169
>KOG4423|consensus
Probab=99.38 E-value=1.5e-15 Score=106.06 Aligned_cols=89 Identities=40% Similarity=0.789 Sum_probs=80.4
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG-EKIKLQIWDTAGQERFRAVTRSYYRGAAG 161 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 161 (173)
....+|++++|+.+||||++++++....|...|..|+|.++..+....+. ..+.+++||.+||++|..+..-||+.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 56789999999999999999999999999999999999998776665544 45789999999999999999999999999
Q ss_pred EEEEEeCCCC
Q psy13826 162 ALMVIDVSHV 171 (173)
Q Consensus 162 ~ilv~d~t~~ 171 (173)
..+|||+|+.
T Consensus 102 ~~iVfdvt~s 111 (229)
T KOG4423|consen 102 AFIVFDVTRS 111 (229)
T ss_pred eEEEEEcccc
Confidence 9999999975
No 170
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.37 E-value=1.4e-12 Score=94.07 Aligned_cols=85 Identities=16% Similarity=0.244 Sum_probs=55.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHhC----CCCCCC-----CCceeeeeEEEEEE----------ECCeEEEEEEEeCCCccc
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQ----KFMPDC-----PHTIGVEFGTRIIE----------VHGEKIKLQIWDTAGQER 147 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~----~~~~~~-----~~t~~~~~~~~~~~----------~~~~~~~l~i~D~~g~~~ 147 (173)
++|+++|++++|||||+++|+.. .+...+ ..|++..+....+. ..+....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 121111 12344333332222 123367889999999875
Q ss_pred cccchhhhhcCCCEEEEEEeCCCC
Q psy13826 148 FRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 148 ~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
+..........+|++++|+|.++.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~ 104 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKG 104 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCC
Confidence 532222334668999999999863
No 171
>KOG0084|consensus
Probab=99.37 E-value=6.2e-13 Score=93.88 Aligned_cols=86 Identities=27% Similarity=0.393 Sum_probs=58.2
Q ss_pred CCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccchhhhhhh--hhccccCCCCCcceee
Q psy13826 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWAL--VSKMSSSGQYSYSYIF 87 (173)
Q Consensus 10 ~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~k~l~~~~--~~~~~~~~~~~~~~~~ 87 (173)
+.++|.+||+++||+|||||||+.||..+.|.++|.+|+|..+........+...+.-+|+. ..++.+.-+..+...-
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 46899999999999999999999999999999999999887775555444443333333322 2222222233344444
Q ss_pred EEEEEeCC
Q psy13826 88 KYIIIGDM 95 (173)
Q Consensus 88 ki~l~G~~ 95 (173)
-|+++=|-
T Consensus 84 Gii~vyDi 91 (205)
T KOG0084|consen 84 GIIFVYDI 91 (205)
T ss_pred eEEEEEEc
Confidence 56666553
No 172
>PRK10218 GTP-binding protein; Provisional
Probab=99.34 E-value=7.6e-12 Score=104.03 Aligned_cols=85 Identities=18% Similarity=0.294 Sum_probs=70.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHh--CCCCCCC------------CCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTE--QKFMPDC------------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 151 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 151 (173)
..+|+++|..++|||||+.+++. +.+.... ..+.|.++......+..+.+.+.+|||+|+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 56899999999999999999997 3343321 235677777766777777889999999999999988
Q ss_pred hhhhhcCCCEEEEEEeCCC
Q psy13826 152 TRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 152 ~~~~~~~~~~~ilv~d~t~ 170 (173)
+..+++.+|++|+|+|+++
T Consensus 85 v~~~l~~aDg~ILVVDa~~ 103 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFD 103 (607)
T ss_pred HHHHHHhCCEEEEEEeccc
Confidence 9999999999999999976
No 173
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.34 E-value=6.8e-12 Score=86.93 Aligned_cols=79 Identities=25% Similarity=0.257 Sum_probs=55.2
Q ss_pred EEEeCCCCChHHHHHHHHhCC--CCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhhhcCC
Q psy13826 90 IIIGDMGVGKSCLLHQFTEQK--FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA--------VTRSYYRGA 159 (173)
Q Consensus 90 ~l~G~~~vGKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~--------~~~~~~~~~ 159 (173)
+++|++|||||||++++++.. +.....++.. +........++ ..+.+|||||...+.. ....+++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~-~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTR-DRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCcee-CceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 479999999999999999875 3333333322 22223333333 5788999999877543 234567899
Q ss_pred CEEEEEEeCCCC
Q psy13826 160 AGALMVIDVSHV 171 (173)
Q Consensus 160 ~~~ilv~d~t~~ 171 (173)
|++++|+|..+.
T Consensus 78 d~ii~v~d~~~~ 89 (157)
T cd01894 78 DVILFVVDGREG 89 (157)
T ss_pred CEEEEEEecccc
Confidence 999999999865
No 174
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.33 E-value=7.7e-12 Score=94.96 Aligned_cols=82 Identities=28% Similarity=0.319 Sum_probs=55.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCC--CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc-cc-------hhhhhc
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AV-------TRSYYR 157 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~-------~~~~~~ 157 (173)
+|+++|.+|||||||+|++++..+. .....|..... ..+...+ ..++.+|||||..... .+ ...+++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i--~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI--SGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE--EEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 6899999999999999999998753 22233433222 1222222 2468899999975321 11 234678
Q ss_pred CCCEEEEEEeCCCCC
Q psy13826 158 GAAGALMVIDVSHVK 172 (173)
Q Consensus 158 ~~~~~ilv~d~t~~~ 172 (173)
++|++++|+|.++..
T Consensus 79 ~aDvvl~VvD~~~~~ 93 (270)
T TIGR00436 79 GVDLILFVVDSDQWN 93 (270)
T ss_pred hCCEEEEEEECCCCC
Confidence 999999999998764
No 175
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.32 E-value=5.5e-12 Score=106.44 Aligned_cols=89 Identities=19% Similarity=0.191 Sum_probs=68.5
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeee--eEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVE--FGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
......|+++|..++|||||++++....+.....+.+..+ .....+..++....+.+|||||++.|..++..+++.+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 3456799999999999999999999887765433322222 22222333445678999999999999999999999999
Q ss_pred EEEEEEeCCCC
Q psy13826 161 GALMVIDVSHV 171 (173)
Q Consensus 161 ~~ilv~d~t~~ 171 (173)
++|+|+|+++.
T Consensus 321 iaILVVDA~dG 331 (742)
T CHL00189 321 IAILIIAADDG 331 (742)
T ss_pred EEEEEEECcCC
Confidence 99999998873
No 176
>KOG0076|consensus
Probab=99.32 E-value=1.6e-12 Score=90.11 Aligned_cols=84 Identities=29% Similarity=0.463 Sum_probs=67.6
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCC-------CCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhc
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQK-------FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 157 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~ 157 (173)
..+.++++|..++|||+|+.+....- -+....||+|.+..+.. ++ ...+.+||.+||+..+++|..||.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~--v~--~~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE--VC--NAPLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee--ec--cceeEEEEcCChHHHHHHHHHHHH
Confidence 35789999999999999998875431 12345578887665443 44 446789999999999999999999
Q ss_pred CCCEEEEEEeCCCCC
Q psy13826 158 GAAGALMVIDVSHVK 172 (173)
Q Consensus 158 ~~~~~ilv~d~t~~~ 172 (173)
.||++|+++|.+|++
T Consensus 92 ~~H~ii~viDa~~~e 106 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRE 106 (197)
T ss_pred HhceeEEeecCCCHH
Confidence 999999999999975
No 177
>PRK11058 GTPase HflX; Provisional
Probab=99.31 E-value=7.3e-12 Score=100.44 Aligned_cols=86 Identities=23% Similarity=0.237 Sum_probs=57.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc--ccchh------hhhc
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF--RAVTR------SYYR 157 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~--~~~~~------~~~~ 157 (173)
..+|+++|.+|||||||+|++.+.++.....+....+.....+.+.+. ..+.+|||+|..+. ..++. ..++
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 368999999999999999999987643222222222233334444432 25679999997432 22222 2368
Q ss_pred CCCEEEEEEeCCCCC
Q psy13826 158 GAAGALMVIDVSHVK 172 (173)
Q Consensus 158 ~~~~~ilv~d~t~~~ 172 (173)
.||++|+|+|+++++
T Consensus 276 ~ADlIL~VvDaS~~~ 290 (426)
T PRK11058 276 QATLLLHVVDAADVR 290 (426)
T ss_pred cCCEEEEEEeCCCcc
Confidence 899999999999875
No 178
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.31 E-value=1.3e-11 Score=104.95 Aligned_cols=86 Identities=21% Similarity=0.266 Sum_probs=67.3
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
......|+++|..++|||||++++....+.....+.+..+.....+..++ ..+.||||||++.|..++...++.+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 44667899999999999999999998777654443333333333344443 5688999999999999999899999999
Q ss_pred EEEEeCCC
Q psy13826 163 LMVIDVSH 170 (173)
Q Consensus 163 ilv~d~t~ 170 (173)
|||||+++
T Consensus 365 ILVVdAdd 372 (787)
T PRK05306 365 VLVVAADD 372 (787)
T ss_pred EEEEECCC
Confidence 99999987
No 179
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.31 E-value=1.6e-11 Score=86.28 Aligned_cols=85 Identities=26% Similarity=0.225 Sum_probs=56.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc----------cc-hh
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR----------AV-TR 153 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----------~~-~~ 153 (173)
.++|+++|++|+|||||++++++..... ...+..........+..++. .+.+||++|..... .. ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 4789999999999999999999876321 11222211222233344444 46799999964331 11 12
Q ss_pred hhhcCCCEEEEEEeCCCCC
Q psy13826 154 SYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 154 ~~~~~~~~~ilv~d~t~~~ 172 (173)
..++.+|++++|+|.+++.
T Consensus 80 ~~~~~~d~vi~v~d~~~~~ 98 (174)
T cd01895 80 KAIERADVVLLVIDATEGI 98 (174)
T ss_pred HHHhhcCeEEEEEeCCCCc
Confidence 3567899999999998874
No 180
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.31 E-value=1.1e-11 Score=93.87 Aligned_cols=85 Identities=21% Similarity=0.275 Sum_probs=62.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCC-----------------CCCCC---ceeeeeEEEEEEECCeEEEEEEEeCCCcc
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFM-----------------PDCPH---TIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~-----------------~~~~~---t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 146 (173)
-+|+++|.+|+|||||+++++...-. .++.+ ..+.++......+..+.+.+.+|||+|+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 47999999999999999999853211 01111 11333444455566677889999999999
Q ss_pred ccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 147 RFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 147 ~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
+|.......++.+|++|+|+|.++.
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g 107 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKG 107 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCC
Confidence 8887667788999999999999864
No 181
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.31 E-value=1.8e-11 Score=91.09 Aligned_cols=82 Identities=27% Similarity=0.302 Sum_probs=56.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc----c---chhhhhcCC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR----A---VTRSYYRGA 159 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----~---~~~~~~~~~ 159 (173)
+++++|.+|||||||++++.+.... ..+..+. .+.....+.+++ ..+++||+||..... . ....+++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT-~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTT-LTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCcc-ccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 7899999999999999999987532 2232222 122233334443 578899999975432 1 223478999
Q ss_pred CEEEEEEeCCCCC
Q psy13826 160 AGALMVIDVSHVK 172 (173)
Q Consensus 160 ~~~ilv~d~t~~~ 172 (173)
|++++|+|+++++
T Consensus 79 d~il~V~D~t~~~ 91 (233)
T cd01896 79 DLILMVLDATKPE 91 (233)
T ss_pred CEEEEEecCCcch
Confidence 9999999998864
No 182
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.31 E-value=6.7e-12 Score=104.05 Aligned_cols=84 Identities=19% Similarity=0.206 Sum_probs=61.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCC----CceeeeeEEEEEE------------ECCeEEEEEEEeCCCcccccc
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCP----HTIGVEFGTRIIE------------VHGEKIKLQIWDTAGQERFRA 150 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~----~t~~~~~~~~~~~------------~~~~~~~l~i~D~~g~~~~~~ 150 (173)
.-|+++|++++|||||++++.+..+..... .++|..+...... +..+...+.+|||||++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 358999999999999999999887654332 2333332111100 000112388999999999999
Q ss_pred chhhhhcCCCEEEEEEeCCC
Q psy13826 151 VTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 151 ~~~~~~~~~~~~ilv~d~t~ 170 (173)
++..+++.+|++++|||+++
T Consensus 85 l~~~~~~~aD~~IlVvD~~~ 104 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINE 104 (590)
T ss_pred HHHHHHhhCCEEEEEEECCc
Confidence 99999999999999999986
No 183
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.31 E-value=2.6e-11 Score=92.26 Aligned_cols=61 Identities=30% Similarity=0.597 Sum_probs=49.6
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCC----------CCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPD----------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 145 (173)
..++|+++|++|+|||||++++++..+... ..+|.+.......+..++..+.+.+|||+|-
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGf 73 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGF 73 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCc
Confidence 468999999999999999999999876543 3556666665666666788899999999993
No 184
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.31 E-value=1.1e-11 Score=103.09 Aligned_cols=82 Identities=21% Similarity=0.350 Sum_probs=65.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHh---CCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTE---QKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
+.|+++|..++|||||+++|.+ +.+..++.+++..+.....+..++ ..+.+||+||+++|......++.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 3689999999999999999996 344455555555555444555555 67899999999999877777889999999
Q ss_pred EEEeCCC
Q psy13826 164 MVIDVSH 170 (173)
Q Consensus 164 lv~d~t~ 170 (173)
+|+|+++
T Consensus 79 LVVDa~~ 85 (581)
T TIGR00475 79 LVVDADE 85 (581)
T ss_pred EEEECCC
Confidence 9999987
No 185
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.30 E-value=6.5e-12 Score=93.60 Aligned_cols=84 Identities=20% Similarity=0.239 Sum_probs=62.4
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCC-------------CCC---CCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFM-------------PDC---PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 151 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~-------------~~~---~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 151 (173)
+|+++|..|+|||||+++++...-. .++ ....+.++......+..+..++.+|||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999999864210 001 112233344444445556678999999999999888
Q ss_pred hhhhhcCCCEEEEEEeCCCC
Q psy13826 152 TRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 152 ~~~~~~~~~~~ilv~d~t~~ 171 (173)
+..+++.+|++++|+|.++.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g 100 (237)
T cd04168 81 VERSLSVLDGAILVISAVEG 100 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCC
Confidence 88899999999999999864
No 186
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.30 E-value=5.7e-12 Score=101.45 Aligned_cols=81 Identities=25% Similarity=0.286 Sum_probs=56.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc--------cccccchhhhhc
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ--------ERFRAVTRSYYR 157 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~--------~~~~~~~~~~~~ 157 (173)
+|+++|++|||||||++++++... ...+..+.. +.....+..++. .+.+|||+|. +.+......+++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~-d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTR-DRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIE 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCccc-CceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence 589999999999999999998763 222222221 222333344444 5889999996 333444566789
Q ss_pred CCCEEEEEEeCCCC
Q psy13826 158 GAAGALMVIDVSHV 171 (173)
Q Consensus 158 ~~~~~ilv~d~t~~ 171 (173)
.+|++++|+|.++.
T Consensus 78 ~ad~vl~vvD~~~~ 91 (429)
T TIGR03594 78 EADVILFVVDGREG 91 (429)
T ss_pred hCCEEEEEEeCCCC
Confidence 99999999998764
No 187
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.28 E-value=6.8e-12 Score=87.93 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=48.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc-----cccchhhhhcCCCEE
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-----FRAVTRSYYRGAAGA 162 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~~~~~~ 162 (173)
+|+++|.+|||||||++++.+.. .. ..++.+. .+... .+|||||+.. +..+. ..++.+|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~-~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~-~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TL-ARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALI-TTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-cc-CccceEE-------EECCC----CcccCCccccCCHHHHHHHH-HHHhcCCEE
Confidence 79999999999999999977543 21 1223222 22222 2699999732 22222 247899999
Q ss_pred EEEEeCCCCCC
Q psy13826 163 LMVIDVSHVKE 173 (173)
Q Consensus 163 ilv~d~t~~~S 173 (173)
++|||+++.+|
T Consensus 69 l~v~d~~~~~s 79 (158)
T PRK15467 69 IYVHGANDPES 79 (158)
T ss_pred EEEEeCCCccc
Confidence 99999998764
No 188
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.27 E-value=3.8e-11 Score=83.55 Aligned_cols=83 Identities=24% Similarity=0.205 Sum_probs=56.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCC--CCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhh
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDC--PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA--------VTRSY 155 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~--------~~~~~ 155 (173)
..+|+++|++|+|||||++++++.+..... ..+... ............+.+|||+|...... .....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRN---RIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA 79 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceec---eEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence 468999999999999999999987643221 112111 11112233456788999999754322 23446
Q ss_pred hcCCCEEEEEEeCCCC
Q psy13826 156 YRGAAGALMVIDVSHV 171 (173)
Q Consensus 156 ~~~~~~~ilv~d~t~~ 171 (173)
+..+|++++|+|++++
T Consensus 80 ~~~~d~i~~v~d~~~~ 95 (168)
T cd04163 80 LKDVDLVLFVVDASEP 95 (168)
T ss_pred HHhCCEEEEEEECCCc
Confidence 7889999999999986
No 189
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.25 E-value=2.4e-11 Score=103.41 Aligned_cols=84 Identities=20% Similarity=0.195 Sum_probs=57.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhhhhc
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--------FRAVTRSYYR 157 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~--------~~~~~~~~~~ 157 (173)
..+|+++|.+|||||||++++++..... ..++.|.+..............+.+|||+|.+. +......+++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~i-v~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAV-VEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 4789999999999999999999875421 122333333222222221234678999999763 2233345788
Q ss_pred CCCEEEEEEeCCC
Q psy13826 158 GAAGALMVIDVSH 170 (173)
Q Consensus 158 ~~~~~ilv~d~t~ 170 (173)
.+|++|+|+|.++
T Consensus 354 ~aD~iL~VvDa~~ 366 (712)
T PRK09518 354 LADAVVFVVDGQV 366 (712)
T ss_pred hCCEEEEEEECCC
Confidence 9999999999976
No 190
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.25 E-value=2.1e-11 Score=86.10 Aligned_cols=78 Identities=29% Similarity=0.393 Sum_probs=51.9
Q ss_pred EEeCCCCChHHHHHHHHhCCC-CCCCCC-ceeeeeEEEEEEECCeEEEEEEEeCCCccc----cccch---hhhhcCCCE
Q psy13826 91 IIGDMGVGKSCLLHQFTEQKF-MPDCPH-TIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVT---RSYYRGAAG 161 (173)
Q Consensus 91 l~G~~~vGKssl~~~~~~~~~-~~~~~~-t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----~~~~~---~~~~~~~~~ 161 (173)
++|++|||||||++++.+.++ ...+.. |..... ..+.+++ ...+.+||+||... .+.+. ..+++.+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNL--GVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcc--eEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence 589999999999999999864 222222 222222 2233331 34678999999732 22232 235778999
Q ss_pred EEEEEeCCCC
Q psy13826 162 ALMVIDVSHV 171 (173)
Q Consensus 162 ~ilv~d~t~~ 171 (173)
+++|+|++++
T Consensus 78 ii~v~d~~~~ 87 (176)
T cd01881 78 ILHVVDASED 87 (176)
T ss_pred EEEEEeccCC
Confidence 9999999987
No 191
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.24 E-value=4e-11 Score=92.74 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=58.3
Q ss_pred EEEEeCCCCChHHHHHHHHhCCCC------CCCCCceeeeeEEEE---------------EEECC-eEEEEEEEeCCCc-
Q psy13826 89 YIIIGDMGVGKSCLLHQFTEQKFM------PDCPHTIGVEFGTRI---------------IEVHG-EKIKLQIWDTAGQ- 145 (173)
Q Consensus 89 i~l~G~~~vGKssl~~~~~~~~~~------~~~~~t~~~~~~~~~---------------~~~~~-~~~~l~i~D~~g~- 145 (173)
|.++|.++||||||++++.+..+. ..+.|++|..+.... ...++ +.+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 578999999999999999988743 223455554432110 11223 4478999999997
Q ss_pred ---cccccchhhh---hcCCCEEEEEEeCCC
Q psy13826 146 ---ERFRAVTRSY---YRGAAGALMVIDVSH 170 (173)
Q Consensus 146 ---~~~~~~~~~~---~~~~~~~ilv~d~t~ 170 (173)
+++..+...+ +++||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 4555565554 899999999999974
No 192
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.23 E-value=4.3e-11 Score=83.56 Aligned_cols=81 Identities=23% Similarity=0.393 Sum_probs=58.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc----------ccccchhhhhc
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----------RFRAVTRSYYR 157 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~~~~~~ 157 (173)
+|+++|++|+|||||++.++++.+.....++.+.+.....+..+. .+.+||++|.. .+......|++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 479999999999999999997777666677766555444444433 78899999942 33444455555
Q ss_pred C---CCEEEEEEeCCCC
Q psy13826 158 G---AAGALMVIDVSHV 171 (173)
Q Consensus 158 ~---~~~~ilv~d~t~~ 171 (173)
. .+++++++|.++.
T Consensus 78 ~~~~~~~~~~v~d~~~~ 94 (170)
T cd01876 78 NRENLKGVVLLIDSRHG 94 (170)
T ss_pred hChhhhEEEEEEEcCcC
Confidence 4 5688899998765
No 193
>KOG0080|consensus
Probab=99.23 E-value=7.9e-12 Score=85.70 Aligned_cols=86 Identities=23% Similarity=0.255 Sum_probs=59.0
Q ss_pred CCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccchhhhhhh--hhccccCCCCCcceee
Q psy13826 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWAL--VSKMSSSGQYSYSYIF 87 (173)
Q Consensus 10 ~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~k~l~~~~--~~~~~~~~~~~~~~~~ 87 (173)
..++..+||+++|++|||||||+.||+.+.|.+..+.|+|..+.-..-...+...+..+|+- ...+.......+...-
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 46788999999999999999999999999999999999888776555555555445444433 2222222233333344
Q ss_pred EEEEEeCC
Q psy13826 88 KYIIIGDM 95 (173)
Q Consensus 88 ki~l~G~~ 95 (173)
-++++-+-
T Consensus 86 GiIlVYDV 93 (209)
T KOG0080|consen 86 GIILVYDV 93 (209)
T ss_pred eeEEEEEc
Confidence 55555553
No 194
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.22 E-value=2.6e-11 Score=89.66 Aligned_cols=80 Identities=24% Similarity=0.324 Sum_probs=54.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCC---CceeeeeEEEEEEE-CCeEEEEEEEeCCCccccc-----cchhhhhcC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCP---HTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFR-----AVTRSYYRG 158 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~---~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~-----~~~~~~~~~ 158 (173)
||+++|++++||||+.+....+-.+.++. +|...+. ..+ ....+.+++||+|||..+- ......+++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~----~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~ 76 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEK----SHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSN 76 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEE----EEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceE----EEEecCCCcEEEEEEcCCccccccccccccHHHHHhc
Confidence 79999999999999999988775443332 4444332 222 2345689999999997553 345678899
Q ss_pred CCEEEEEEeCCCC
Q psy13826 159 AAGALMVIDVSHV 171 (173)
Q Consensus 159 ~~~~ilv~d~t~~ 171 (173)
+.++|+|+|+.+.
T Consensus 77 v~~LIyV~D~qs~ 89 (232)
T PF04670_consen 77 VGVLIYVFDAQSD 89 (232)
T ss_dssp ESEEEEEEETT-S
T ss_pred cCEEEEEEEcccc
Confidence 9999999999844
No 195
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.22 E-value=2.1e-11 Score=89.12 Aligned_cols=84 Identities=19% Similarity=0.193 Sum_probs=56.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCC--------------------------CC---CceeeeeEEEEEEECCeEEEEE
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPD--------------------------CP---HTIGVEFGTRIIEVHGEKIKLQ 138 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~--------------------------~~---~t~~~~~~~~~~~~~~~~~~l~ 138 (173)
+|+++|.+|+|||||+++++...-... .. ...|.+.......+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999975431110 00 0012222222223333445678
Q ss_pred EEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 139 IWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 139 i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
+|||||+++|.......++.+|++|+|+|+++.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~ 113 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKG 113 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence 999999988865556678899999999999864
No 196
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.21 E-value=4.7e-11 Score=83.06 Aligned_cols=83 Identities=22% Similarity=0.312 Sum_probs=54.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc------ccchhhhh--cC
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF------RAVTRSYY--RG 158 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~------~~~~~~~~--~~ 158 (173)
++|+++|.||||||||+|++.+........|....+.....+.+.+ ..+.+.|+||.-.. +.+...++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999874322223333344455566666 45678899995322 23334444 68
Q ss_pred CCEEEEEEeCCCC
Q psy13826 159 AAGALMVIDVSHV 171 (173)
Q Consensus 159 ~~~~ilv~d~t~~ 171 (173)
.|+++.|.|.++.
T Consensus 79 ~D~ii~VvDa~~l 91 (156)
T PF02421_consen 79 PDLIIVVVDATNL 91 (156)
T ss_dssp SSEEEEEEEGGGH
T ss_pred CCEEEEECCCCCH
Confidence 9999999999874
No 197
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.20 E-value=6.3e-11 Score=98.81 Aligned_cols=87 Identities=25% Similarity=0.395 Sum_probs=65.4
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCC--CC-----CCC------CCceeeeeEEEEEEE-----CCeEEEEEEEeCCCcc
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQK--FM-----PDC------PHTIGVEFGTRIIEV-----HGEKIKLQIWDTAGQE 146 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~--~~-----~~~------~~t~~~~~~~~~~~~-----~~~~~~l~i~D~~g~~ 146 (173)
..-+++++|..++|||||+.+++... +. ..+ ..+.|.++....+.+ +++.+.+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 34589999999999999999998632 11 111 123344444333333 5567899999999999
Q ss_pred ccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 147 RFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 147 ~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
+|...+..+++.+|++|+|+|+++.
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~g 110 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQG 110 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCC
Confidence 9998888999999999999999874
No 198
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.20 E-value=8.7e-11 Score=97.68 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=60.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCC----CceeeeeEEEEEE--ECCeEE----------EEEEEeCCCccccc
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP----HTIGVEFGTRIIE--VHGEKI----------KLQIWDTAGQERFR 149 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~----~t~~~~~~~~~~~--~~~~~~----------~l~i~D~~g~~~~~ 149 (173)
...|+++|.+++|||||++++.+........ +++|..+...... ..+... .+.+|||||++.|.
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~ 85 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT 85 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence 3469999999999999999998765433322 2344332211110 001111 26899999999999
Q ss_pred cchhhhhcCCCEEEEEEeCCC
Q psy13826 150 AVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 150 ~~~~~~~~~~~~~ilv~d~t~ 170 (173)
.++...++.+|++++|+|+++
T Consensus 86 ~~~~~~~~~aD~~IlVvDa~~ 106 (586)
T PRK04004 86 NLRKRGGALADIAILVVDINE 106 (586)
T ss_pred HHHHHhHhhCCEEEEEEECCC
Confidence 888888999999999999986
No 199
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.20 E-value=8.3e-11 Score=94.73 Aligned_cols=89 Identities=19% Similarity=0.206 Sum_probs=62.8
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhC--CCCC------------------------C---CCCceeeeeEEEEEEECCeE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMP------------------------D---CPHTIGVEFGTRIIEVHGEK 134 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~--~~~~------------------------~---~~~t~~~~~~~~~~~~~~~~ 134 (173)
...++|+++|..++|||||+.+++.. .... + .+...|.+.......+....
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 35689999999999999999999862 1110 0 00111333333333445556
Q ss_pred EEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826 135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 135 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
..+.|||++|+++|.......++.+|++|+|+|+++.+
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~ 122 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGE 122 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCC
Confidence 78999999999988655555678999999999999863
No 200
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.19 E-value=6.2e-11 Score=89.90 Aligned_cols=84 Identities=24% Similarity=0.279 Sum_probs=58.2
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCC------c----------eeeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPH------T----------IGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 151 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~------t----------~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 151 (173)
+|+++|.+|+|||||+++++.......... + .+.........+......+.+|||+|...|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 489999999999999999985431111000 0 011122222233334567889999999888777
Q ss_pred hhhhhcCCCEEEEEEeCCCC
Q psy13826 152 TRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 152 ~~~~~~~~~~~ilv~d~t~~ 171 (173)
+..+++.+|++++|+|.++.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g 100 (268)
T cd04170 81 TRAALRAADAALVVVSAQSG 100 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCC
Confidence 78889999999999999874
No 201
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.19 E-value=1.2e-10 Score=90.74 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=54.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCC-CCCC-CceeeeeEEEEEEECCeEEEEEEEeCCCccc----cccchhh---hh
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCP-HTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVTRS---YY 156 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----~~~~~~~---~~ 156 (173)
...|.|+|.||||||||++++...... ..|+ .|.... ...+.+. ....+.+||+||... ...+... ++
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~--~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhi 234 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPN--LGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHI 234 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCce--EEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHh
Confidence 346789999999999999999976432 2222 222222 2223332 223578999999632 1223333 45
Q ss_pred cCCCEEEEEEeCCCCC
Q psy13826 157 RGAAGALMVIDVSHVK 172 (173)
Q Consensus 157 ~~~~~~ilv~d~t~~~ 172 (173)
+.++++|+|+|+++++
T Consensus 235 e~a~vlI~ViD~s~~~ 250 (335)
T PRK12299 235 ERTRLLLHLVDIEAVD 250 (335)
T ss_pred hhcCEEEEEEcCCCCC
Confidence 5799999999999865
No 202
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.19 E-value=2e-10 Score=76.25 Aligned_cols=79 Identities=27% Similarity=0.314 Sum_probs=52.3
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc----------ccchhhh
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF----------RAVTRSY 155 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~~~~~~ 155 (173)
+|+++|.+|+|||||++.+++... .....++.... ....+.+++..+ .++||||...- ..... .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~-~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~-~ 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDP-VYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLE-Q 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSE-EEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHH-H
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeee-eeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHH-H
Confidence 689999999999999999998542 12222222222 233445566654 58999995321 12222 3
Q ss_pred hcCCCEEEEEEeCCC
Q psy13826 156 YRGAAGALMVIDVSH 170 (173)
Q Consensus 156 ~~~~~~~ilv~d~t~ 170 (173)
+..+|++++|+|.++
T Consensus 77 ~~~~d~ii~vv~~~~ 91 (116)
T PF01926_consen 77 ISKSDLIIYVVDASN 91 (116)
T ss_dssp HCTESEEEEEEETTS
T ss_pred HHHCCEEEEEEECCC
Confidence 488999999999765
No 203
>KOG0072|consensus
Probab=99.18 E-value=8.6e-12 Score=84.01 Aligned_cols=83 Identities=29% Similarity=0.502 Sum_probs=71.0
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
...+++++|..|+|||+++.++--++.. ...||+|.+... +..+..++++||..|+-..+..|+.||.+.+++|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCccc----cccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 5678999999999999999999877654 456788866543 33477889999999999999999999999999999
Q ss_pred EEeCCCCC
Q psy13826 165 VIDVSHVK 172 (173)
Q Consensus 165 v~d~t~~~ 172 (173)
|+|.+|++
T Consensus 92 VVDssd~d 99 (182)
T KOG0072|consen 92 VVDSSDRD 99 (182)
T ss_pred EEeccchh
Confidence 99999975
No 204
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.18 E-value=1.5e-10 Score=98.89 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=61.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc----------hhhh
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV----------TRSY 155 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~----------~~~~ 155 (173)
.++|+++|.+|||||||+|++.+.... .....|.++..+.-.+......+++||+||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~--vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR--VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 468999999999999999999887542 2233444454444445555667899999998766431 2234
Q ss_pred h--cCCCEEEEEEeCCCCC
Q psy13826 156 Y--RGAAGALMVIDVSHVK 172 (173)
Q Consensus 156 ~--~~~~~~ilv~d~t~~~ 172 (173)
+ ..+|++++|+|.++.+
T Consensus 81 l~~~~aD~vI~VvDat~le 99 (772)
T PRK09554 81 ILSGDADLLINVVDASNLE 99 (772)
T ss_pred HhccCCCEEEEEecCCcch
Confidence 3 4799999999999865
No 205
>PRK00089 era GTPase Era; Reviewed
Probab=99.17 E-value=1.4e-10 Score=89.02 Aligned_cols=82 Identities=24% Similarity=0.243 Sum_probs=54.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCC--CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc--------cchhhh
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPD--CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR--------AVTRSY 155 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~--------~~~~~~ 155 (173)
.-.|+++|++|||||||++++++...... ...|..... . .+. .....++.+|||||..... ......
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i-~-~i~-~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRI-R-GIV-TEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccE-E-EEE-EcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 35699999999999999999998765321 222222211 1 111 1233678999999964322 122345
Q ss_pred hcCCCEEEEEEeCCC
Q psy13826 156 YRGAAGALMVIDVSH 170 (173)
Q Consensus 156 ~~~~~~~ilv~d~t~ 170 (173)
+.++|++++|+|+++
T Consensus 82 ~~~~D~il~vvd~~~ 96 (292)
T PRK00089 82 LKDVDLVLFVVDADE 96 (292)
T ss_pred HhcCCEEEEEEeCCC
Confidence 788999999999987
No 206
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.17 E-value=1.6e-10 Score=79.47 Aligned_cols=81 Identities=20% Similarity=0.182 Sum_probs=53.9
Q ss_pred EEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc-------hhhhhcCCCEE
Q psy13826 91 IIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV-------TRSYYRGAAGA 162 (173)
Q Consensus 91 l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~-------~~~~~~~~~~~ 162 (173)
++|++|+|||||++++++..... ...+.............. ....+.+||++|...+... ...+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999999875442 112111111112122221 1457899999998766433 33478999999
Q ss_pred EEEEeCCCCC
Q psy13826 163 LMVIDVSHVK 172 (173)
Q Consensus 163 ilv~d~t~~~ 172 (173)
++|+|.++..
T Consensus 80 l~v~~~~~~~ 89 (163)
T cd00880 80 LFVVDADLRA 89 (163)
T ss_pred EEEEeCCCCC
Confidence 9999998875
No 207
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.16 E-value=1.2e-10 Score=93.79 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=61.3
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCC--------------------------C---CCCceeeeeEEEEEEECCeEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMP--------------------------D---CPHTIGVEFGTRIIEVHGEKI 135 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~--------------------------~---~~~t~~~~~~~~~~~~~~~~~ 135 (173)
..++|+++|.+++|||||+++++...-.. + .+...|.+.......+.....
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 46899999999999999999998432110 0 001233334444444555667
Q ss_pred EEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 136 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
.+.+|||||+++|.......++.+|++|+|+|+++
T Consensus 85 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~ 119 (425)
T PRK12317 85 YFTIVDCPGHRDFVKNMITGASQADAAVLVVAADD 119 (425)
T ss_pred EEEEEECCCcccchhhHhhchhcCCEEEEEEEccc
Confidence 89999999998886544455688999999999987
No 208
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.15 E-value=1.2e-10 Score=85.80 Aligned_cols=84 Identities=19% Similarity=0.300 Sum_probs=59.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCC--CCC------------CCceeeeeEEE--EEEEC--------CeEEEEEEEeCC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFM--PDC------------PHTIGVEFGTR--IIEVH--------GEKIKLQIWDTA 143 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~--~~~------------~~t~~~~~~~~--~~~~~--------~~~~~l~i~D~~ 143 (173)
+|+++|..++|||||+.+++...-. ... +...|.+.... .+... ++.+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999854311 000 00111221111 11222 447889999999
Q ss_pred CccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 144 GQERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
|++.|......+++.+|++++|||+++.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g 109 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEG 109 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCC
Confidence 9999998888999999999999999864
No 209
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.15 E-value=2.2e-10 Score=89.25 Aligned_cols=83 Identities=20% Similarity=0.241 Sum_probs=55.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCC-CCCCC-ceeeeeEEEEEEECCeEEEEEEEeCCCcccc----ccchhhhh---
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPH-TIGVEFGTRIIEVHGEKIKLQIWDTAGQERF----RAVTRSYY--- 156 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----~~~~~~~~--- 156 (173)
...|+++|.+|||||||++++...+.. ..|+. |... ....+.+++ ...+.+||+||.... ..+...++
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p--~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhi 233 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVP--NLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHI 233 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCC--EEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHH
Confidence 457889999999999999999986532 22221 2221 122233433 356889999997422 23444444
Q ss_pred cCCCEEEEEEeCCCC
Q psy13826 157 RGAAGALMVIDVSHV 171 (173)
Q Consensus 157 ~~~~~~ilv~d~t~~ 171 (173)
..++++|+|+|+++.
T Consensus 234 erad~ll~VvD~s~~ 248 (329)
T TIGR02729 234 ERTRVLLHLIDISPL 248 (329)
T ss_pred HhhCEEEEEEcCccc
Confidence 469999999999975
No 210
>KOG0095|consensus
Probab=99.14 E-value=4e-11 Score=81.34 Aligned_cols=88 Identities=25% Similarity=0.422 Sum_probs=59.2
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccchhhhh--hhhhccccCCCCCcceeeE
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLW--ALVSKMSSSGQYSYSYIFK 88 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~k~l~~--~~~~~~~~~~~~~~~~~~k 88 (173)
.|.+.+||+++|+.|||||||++||+++-|++....|+|..++-.....++...+.-+| +....+.+..+..+...--
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 57899999999999999999999999999999999998877765555444433333232 2233333333333444444
Q ss_pred EEEEeCCCCC
Q psy13826 89 YIIIGDMGVG 98 (173)
Q Consensus 89 i~l~G~~~vG 98 (173)
++++-+-.+-
T Consensus 83 lilvydiscq 92 (213)
T KOG0095|consen 83 LILVYDISCQ 92 (213)
T ss_pred EEEEEecccC
Confidence 5555554443
No 211
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.14 E-value=1.4e-10 Score=96.50 Aligned_cols=83 Identities=22% Similarity=0.342 Sum_probs=64.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhC--CCCCCC------------CCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ--KFMPDC------------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTR 153 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~--~~~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 153 (173)
+|+++|..++|||||+.+++.. .+.... ....|.++......+..+.+.+.+|||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999863 332211 12335555555555555667899999999999988888
Q ss_pred hhhcCCCEEEEEEeCCC
Q psy13826 154 SYYRGAAGALMVIDVSH 170 (173)
Q Consensus 154 ~~~~~~~~~ilv~d~t~ 170 (173)
.+++.+|++++|+|.++
T Consensus 83 ~~l~~aD~alLVVDa~~ 99 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASE 99 (594)
T ss_pred HHHHhCCEEEEEEeCCC
Confidence 89999999999999975
No 212
>KOG0094|consensus
Probab=99.13 E-value=8.1e-11 Score=83.22 Aligned_cols=60 Identities=22% Similarity=0.174 Sum_probs=44.9
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEE--eeccCcccchhhhhhh
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL--VSTSQPITRKNLLWAL 71 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~--~s~~~~~~~k~l~~~~ 71 (173)
+-..+|||+|||.+||||||+.||+.+.|...|++|+|..++.. ....+....+.|..+.
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAG 80 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 80 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEeccc
Confidence 34568999999999999999999999999999999977655443 3344444444444333
No 213
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.12 E-value=3.6e-10 Score=94.23 Aligned_cols=78 Identities=24% Similarity=0.319 Sum_probs=57.4
Q ss_pred eCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc------hhhhh--cCCCEEEE
Q psy13826 93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV------TRSYY--RGAAGALM 164 (173)
Q Consensus 93 G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~------~~~~~--~~~~~~il 164 (173)
|++|||||||+|++.+..+.....|....+.....+..++. .+++|||||+..+... .+.++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999988764444455555555555555554 4789999999877543 34444 37999999
Q ss_pred EEeCCCCC
Q psy13826 165 VIDVSHVK 172 (173)
Q Consensus 165 v~d~t~~~ 172 (173)
|+|.++.+
T Consensus 79 VvDat~le 86 (591)
T TIGR00437 79 VVDASNLE 86 (591)
T ss_pred EecCCcch
Confidence 99999864
No 214
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.11 E-value=4.7e-10 Score=78.72 Aligned_cols=87 Identities=28% Similarity=0.531 Sum_probs=66.6
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCC--------CC----CCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP--------DC----PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA 150 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~--------~~----~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 150 (173)
.....||++.|+.++|||+++.+++....+. .+ ..|+..++.... ++ ....+++++||||++|+.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~--~~-~~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIE--LD-EDTGVHLFGTPGQERFKF 83 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceE--Ec-CcceEEEecCCCcHHHHH
Confidence 3456899999999999999999999876321 11 134444443322 22 234688999999999999
Q ss_pred chhhhhcCCCEEEEEEeCCCCC
Q psy13826 151 VTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 151 ~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
+|..+.+.+.++|++.|.+.+.
T Consensus 84 m~~~l~~ga~gaivlVDss~~~ 105 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPI 105 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCc
Confidence 9999999999999999988763
No 215
>KOG0092|consensus
Probab=99.11 E-value=7.3e-11 Score=83.19 Aligned_cols=58 Identities=29% Similarity=0.440 Sum_probs=48.1
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccchhhhhhh
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWAL 71 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~k~l~~~~ 71 (173)
..+||++||+++||||||+.||+.++|.+...+|+|..++.......+...+-.+|+-
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDT 61 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDT 61 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEc
Confidence 4689999999999999999999999999999999998887777666665555444433
No 216
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.10 E-value=4.1e-10 Score=92.66 Aligned_cols=87 Identities=21% Similarity=0.284 Sum_probs=65.5
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhC-CCCC----------------C---CCCceeeeeEEEEEEECCeEEEEEEEeCC
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQ-KFMP----------------D---CPHTIGVEFGTRIIEVHGEKIKLQIWDTA 143 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~-~~~~----------------~---~~~t~~~~~~~~~~~~~~~~~~l~i~D~~ 143 (173)
....+++++|.+++|||||+.+++.. .... + .....|.++......++.+.+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 34679999999999999999998631 1110 0 11123555555556666777889999999
Q ss_pred CccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 144 GQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
|+..|.......++.+|++|+|+|.++
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~ 115 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAK 115 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCC
Confidence 999888766778899999999999876
No 217
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.10 E-value=3.4e-10 Score=82.49 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=54.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEE--EEC---------------------------C----
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRII--EVH---------------------------G---- 132 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~--~~~---------------------------~---- 132 (173)
++|+++|..|+|||||+..+.+-.... ...-..+.++..... ... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 478999999999999999997542111 000011111111100 000 0
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
....+.+|||||++.|.......+..+|++++|+|++++
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~ 119 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEP 119 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCC
Confidence 115789999999998876666677889999999999873
No 218
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.10 E-value=3.6e-10 Score=89.68 Aligned_cols=88 Identities=28% Similarity=0.327 Sum_probs=63.3
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCC--CCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccch------
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQK--FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT------ 152 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~------ 152 (173)
.....-+|++++|.||||||||+|.+++.+ .+.+...|..+-. ...+.+++ +.+.+.||+|........
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDvi-ee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIe 288 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVI-EEDINLNG--IPVRLVDTAGIRETDDVVERIGIE 288 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceE-EEEEEECC--EEEEEEecCCcccCccHHHHHHHH
Confidence 345567999999999999999999999876 3444454554433 33444554 556788999975443222
Q ss_pred --hhhhcCCCEEEEEEeCCCC
Q psy13826 153 --RSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 153 --~~~~~~~~~~ilv~d~t~~ 171 (173)
...+.+||.+++|+|.+.+
T Consensus 289 Rs~~~i~~ADlvL~v~D~~~~ 309 (454)
T COG0486 289 RAKKAIEEADLVLFVLDASQP 309 (454)
T ss_pred HHHHHHHhCCEEEEEEeCCCC
Confidence 3467899999999999985
No 219
>PRK13351 elongation factor G; Reviewed
Probab=99.09 E-value=2.8e-10 Score=96.67 Aligned_cols=88 Identities=18% Similarity=0.209 Sum_probs=62.7
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCC-------------CCCCCC---ceeeeeEEEEEEECCeEEEEEEEeCCCccc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKF-------------MPDCPH---TIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~-------------~~~~~~---t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 147 (173)
+...+|+++|..++|||||+++++...- ..++.+ ..+.+.......+......+.+|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 3467999999999999999999985321 111000 112222222223333467889999999999
Q ss_pred cccchhhhhcCCCEEEEEEeCCCC
Q psy13826 148 FRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 148 ~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
|...+..+++.+|++|+|+|.++.
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~ 109 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTG 109 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCC
Confidence 988888999999999999999875
No 220
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.09 E-value=3.9e-10 Score=81.80 Aligned_cols=82 Identities=13% Similarity=0.201 Sum_probs=50.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceee-eeEEEEEEEC-CeEEEEEEEeCCCccccccchhh-----hhcC
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGV-EFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRS-----YYRG 158 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~-----~~~~ 158 (173)
.+||+++|++|||||||++.+++..+......+.+. ........+. .....+.+||++|.......... .+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 378999999999999999999987665433333331 1100000111 11236889999997543222222 3677
Q ss_pred CCEEEEEEe
Q psy13826 159 AAGALMVID 167 (173)
Q Consensus 159 ~~~~ilv~d 167 (173)
+|+++++.|
T Consensus 81 ~d~~l~v~~ 89 (197)
T cd04104 81 YDFFIIISS 89 (197)
T ss_pred cCEEEEEeC
Confidence 899888743
No 221
>KOG0078|consensus
Probab=99.09 E-value=2.3e-11 Score=86.96 Aligned_cols=85 Identities=27% Similarity=0.467 Sum_probs=59.3
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccchhhhhhhhhccccCCCCCcc------
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKMSSSGQYSYS------ 84 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~k~l~~~~~~~~~~~~~~~~~------ 84 (173)
.+++.+||+++||++|||||++.||.++.|...+..|+|..+.-......+...+.-+| ..++|+.+.
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiW------DtaGQerf~ti~~sY 81 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIW------DTAGQERFRTITTAY 81 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEE------EcccchhHHHHHHHH
Confidence 58999999999999999999999999999999999997766644444443333332222 234444433
Q ss_pred --eeeEEEEEeCCCCChHH
Q psy13826 85 --YIFKYIIIGDMGVGKSC 101 (173)
Q Consensus 85 --~~~ki~l~G~~~vGKss 101 (173)
....++++=+----||.
T Consensus 82 yrgA~gi~LvyDitne~Sf 100 (207)
T KOG0078|consen 82 YRGAMGILLVYDITNEKSF 100 (207)
T ss_pred HhhcCeeEEEEEccchHHH
Confidence 34566666666555654
No 222
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.09 E-value=2.6e-10 Score=93.80 Aligned_cols=87 Identities=22% Similarity=0.270 Sum_probs=64.0
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCC-----------------CCCC---CceeeeeEEEEEEECCeEEEEEEEeCC
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-----------------PDCP---HTIGVEFGTRIIEVHGEKIKLQIWDTA 143 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~-----------------~~~~---~t~~~~~~~~~~~~~~~~~~l~i~D~~ 143 (173)
....+|+++|..++|||||+.+++...-. .++. ...|.++......+..+.+.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 34669999999999999999999741100 0001 122444444445555566789999999
Q ss_pred CccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 144 GQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
|++.|......+++.+|++|+|+|.++
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~ 114 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAK 114 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCC
Confidence 999998777778999999999999976
No 223
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.09 E-value=7.6e-10 Score=88.08 Aligned_cols=83 Identities=22% Similarity=0.295 Sum_probs=57.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCC-CC-----CCceeeeeEEEEE---------------EEC-CeEEEEEEEeCCC
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DC-----PHTIGVEFGTRII---------------EVH-GEKIKLQIWDTAG 144 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~-~~-----~~t~~~~~~~~~~---------------~~~-~~~~~l~i~D~~g 144 (173)
+||.++|.||||||||++++.+.++.. +| .|+.|..+....+ ..+ ...+.+++||++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999877543 33 2344432210000 011 2346799999999
Q ss_pred c----cccccchhhh---hcCCCEEEEEEeCC
Q psy13826 145 Q----ERFRAVTRSY---YRGAAGALMVIDVS 169 (173)
Q Consensus 145 ~----~~~~~~~~~~---~~~~~~~ilv~d~t 169 (173)
. .....+...+ ++++|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 3344555566 88999999999997
No 224
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.07 E-value=9.3e-10 Score=88.13 Aligned_cols=82 Identities=20% Similarity=0.187 Sum_probs=53.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCC-CCCCC-ceeeeeEEEEEEECCeEEEEEEEeCCCccc----cccchhhhh---c
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPH-TIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVTRSYY---R 157 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----~~~~~~~~~---~ 157 (173)
..|+++|.||||||||++++++.+.. ..++- |...+. ..+.++. ...+.+||+||... ...+...|+ .
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~Pnl--G~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhie 235 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNL--GVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIE 235 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEE--EEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHh
Confidence 47899999999999999999986532 12222 222222 2233321 34688999999632 223444444 4
Q ss_pred CCCEEEEEEeCCCC
Q psy13826 158 GAAGALMVIDVSHV 171 (173)
Q Consensus 158 ~~~~~ilv~d~t~~ 171 (173)
.++++|+|+|+++.
T Consensus 236 r~~llI~VID~s~~ 249 (424)
T PRK12297 236 RTRVIVHVIDMSGS 249 (424)
T ss_pred hCCEEEEEEeCCcc
Confidence 59999999999864
No 225
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.06 E-value=4.9e-10 Score=85.03 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=59.3
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCC-------------CCC---CceeeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMP-------------DCP---HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 151 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~-------------~~~---~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 151 (173)
+|+++|.+++|||||+++++...-.. ++. ...|.+.......+..+...+.+|||||...|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 48899999999999999997421100 001 12233333333344344567889999999888877
Q ss_pred hhhhhcCCCEEEEEEeCCC
Q psy13826 152 TRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 152 ~~~~~~~~~~~ilv~d~t~ 170 (173)
+...++.+|++|+|+|.++
T Consensus 81 ~~~~l~~aD~ailVVDa~~ 99 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVA 99 (270)
T ss_pred HHHHHHHcCEEEEEEECCC
Confidence 8889999999999999875
No 226
>KOG0087|consensus
Probab=99.06 E-value=1.7e-10 Score=82.49 Aligned_cols=56 Identities=34% Similarity=0.456 Sum_probs=46.1
Q ss_pred CCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccch
Q psy13826 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRK 65 (173)
Q Consensus 10 ~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~k 65 (173)
..+|+.+||+++||++||||-|+.||..++|..+..+|+|..+........+...+
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vk 64 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVK 64 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEE
Confidence 47899999999999999999999999999999999999887665554444333333
No 227
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.05 E-value=1e-09 Score=89.18 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=54.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc----cccchh---hhhc
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVTR---SYYR 157 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----~~~~~~---~~~~ 157 (173)
..+|+|+|.||||||||++++.+..... +|+-|. .......+.+++ ..+.+||+||... ...+.. .++.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTT-l~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTT-LVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCccc-ccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 4678999999999999999999765322 222221 112222333433 5789999999532 111222 2457
Q ss_pred CCCEEEEEEeCCCC
Q psy13826 158 GAAGALMVIDVSHV 171 (173)
Q Consensus 158 ~~~~~ilv~d~t~~ 171 (173)
.++++|+|+|+++.
T Consensus 236 radvLv~VVD~s~~ 249 (500)
T PRK12296 236 RCAVLVHVVDCATL 249 (500)
T ss_pred hcCEEEEEECCccc
Confidence 79999999999864
No 228
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.05 E-value=5.8e-10 Score=95.06 Aligned_cols=87 Identities=21% Similarity=0.279 Sum_probs=64.9
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhC---------------CCCCC---CCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQ---------------KFMPD---CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~---------------~~~~~---~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 145 (173)
....+|+++|..++|||||+.+++.. .+... ...|+........+..++..+.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34679999999999999999999853 11111 1124333332333345677889999999999
Q ss_pred cccccchhhhhcCCCEEEEEEeCCC
Q psy13826 146 ERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 146 ~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
.+|.......++.+|++|+|+|..+
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~ 121 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVE 121 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCC
Confidence 9988777888999999999999875
No 229
>KOG1423|consensus
Probab=99.00 E-value=2.9e-09 Score=80.50 Aligned_cols=91 Identities=21% Similarity=0.197 Sum_probs=60.7
Q ss_pred CCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc------c--
Q psy13826 80 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA------V-- 151 (173)
Q Consensus 80 ~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~------~-- 151 (173)
.++..+.+.|+++|.||||||+|.|.+++..........-.. .....-.+.....++.++||||.-.-.. .
T Consensus 66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TT-r~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s 144 (379)
T KOG1423|consen 66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTT-RHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMS 144 (379)
T ss_pred chhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccce-eeeeeEEEecCceEEEEecCCcccccchhhhHHHHHH
Confidence 355678899999999999999999999998754432221111 1111222445567889999999422111 1
Q ss_pred ----hhhhhcCCCEEEEEEeCCCC
Q psy13826 152 ----TRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 152 ----~~~~~~~~~~~ilv~d~t~~ 171 (173)
-...+..||++++++|+++.
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~t 168 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASAT 168 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCC
Confidence 12245679999999999963
No 230
>KOG1707|consensus
Probab=99.00 E-value=6e-10 Score=90.15 Aligned_cols=88 Identities=25% Similarity=0.320 Sum_probs=66.6
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...++|+++|+.|||||||+..++.++|+++.++.... + .....+.-..+...|.|++..+.-+.....-++.||++.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~-i-~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR-I-LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc-c-ccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 35689999999999999999999999998876653321 1 111233344555788999877665555677789999999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
++|+++++++
T Consensus 85 lvyavd~~~T 94 (625)
T KOG1707|consen 85 LVYAVDDEST 94 (625)
T ss_pred EEEecCChHH
Confidence 9999999753
No 231
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.00 E-value=5.7e-10 Score=83.16 Aligned_cols=91 Identities=23% Similarity=0.376 Sum_probs=61.4
Q ss_pred CCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEE-EEEECCeEEEEEEEeCCCccc-------cccc
Q psy13826 80 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR-IIEVHGEKIKLQIWDTAGQER-------FRAV 151 (173)
Q Consensus 80 ~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~l~i~D~~g~~~-------~~~~ 151 (173)
+......++++++|..|+||||++|+++.++..+...--.+.+.... ...+++ -.+.+||+||-+. ++..
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~ 110 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQL 110 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHH
Confidence 34455678999999999999999999997654332211111111111 122333 3688999999654 5555
Q ss_pred hhhhhcCCCEEEEEEeCCCCC
Q psy13826 152 TRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 152 ~~~~~~~~~~~ilv~d~t~~~ 172 (173)
...++...|.++++.|..|+.
T Consensus 111 ~~d~l~~~DLvL~l~~~~dra 131 (296)
T COG3596 111 YRDYLPKLDLVLWLIKADDRA 131 (296)
T ss_pred HHHHhhhccEEEEeccCCCcc
Confidence 667888899999998888764
No 232
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.99 E-value=1.9e-09 Score=77.07 Aligned_cols=89 Identities=28% Similarity=0.446 Sum_probs=66.0
Q ss_pred CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCC----------cccc
Q psy13826 79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG----------QERF 148 (173)
Q Consensus 79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g----------~~~~ 148 (173)
.+.+.+....|+++|.+|||||||+|.+++..-....+.|.|.+.....+.++++ +.+.|.|| ++.+
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w 93 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKW 93 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHH
Confidence 3444556779999999999999999999998766666777887776666677665 67889999 3445
Q ss_pred ccchhhhhcC---CCEEEEEEeCCC
Q psy13826 149 RAVTRSYYRG---AAGALMVIDVSH 170 (173)
Q Consensus 149 ~~~~~~~~~~---~~~~ilv~d~t~ 170 (173)
..+...|++. -.+++++.|+-.
T Consensus 94 ~~~i~~YL~~R~~L~~vvlliD~r~ 118 (200)
T COG0218 94 KKLIEEYLEKRANLKGVVLLIDARH 118 (200)
T ss_pred HHHHHHHHhhchhheEEEEEEECCC
Confidence 5555666654 457777778754
No 233
>COG1159 Era GTPase [General function prediction only]
Probab=98.99 E-value=1.1e-09 Score=82.41 Aligned_cols=82 Identities=28% Similarity=0.311 Sum_probs=54.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCC--CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc--------cchhhh
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMP--DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR--------AVTRSY 155 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~--------~~~~~~ 155 (173)
.--|+++|.||||||||+|++++....- .-..|..... ... +.....++.+.||||-.+-. ......
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I-~GI--~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRI-RGI--VTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhhe-eEE--EEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 4568999999999999999999987432 1222322222 112 22235677889999953322 112345
Q ss_pred hcCCCEEEEEEeCCC
Q psy13826 156 YRGAAGALMVIDVSH 170 (173)
Q Consensus 156 ~~~~~~~ilv~d~t~ 170 (173)
+.++|++++|.|.+.
T Consensus 83 l~dvDlilfvvd~~~ 97 (298)
T COG1159 83 LKDVDLILFVVDADE 97 (298)
T ss_pred hccCcEEEEEEeccc
Confidence 789999999999986
No 234
>PRK12735 elongation factor Tu; Reviewed
Probab=98.98 E-value=2.6e-09 Score=85.29 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=61.1
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhC-------CC-----CC--CCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQ-------KF-----MP--DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~-------~~-----~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 148 (173)
....++|+++|..++|||||++++++. .+ .+ ......|.+.......+......+.++||||+++|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 345689999999999999999999862 11 00 01112344444444444444556789999999887
Q ss_pred ccchhhhhcCCCEEEEEEeCCC
Q psy13826 149 RAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 149 ~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
.......+..+|++++|+|+++
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~ 110 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAAD 110 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCC
Confidence 6544556778999999999876
No 235
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.98 E-value=1.6e-09 Score=78.42 Aligned_cols=80 Identities=16% Similarity=0.266 Sum_probs=51.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCC----CCceeeeeEEEEEEECCeEEEEEEEeCCCccccc--------cch--
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDC----PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR--------AVT-- 152 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~--------~~~-- 152 (173)
++|+++|.+|||||||+|.+++.+..... ..|.... ......++. .+.++||||-.... .+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~--~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~ 76 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQ--KESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRC 76 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccc--eeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHH
Confidence 47999999999999999999987643222 1122211 222233443 57888999964331 111
Q ss_pred -hhhhcCCCEEEEEEeCCC
Q psy13826 153 -RSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 153 -~~~~~~~~~~ilv~d~t~ 170 (173)
.......|++|+|.|+.+
T Consensus 77 ~~~~~~g~~~illVi~~~~ 95 (196)
T cd01852 77 LSLSAPGPHAFLLVVPLGR 95 (196)
T ss_pred HHhcCCCCEEEEEEEECCC
Confidence 112357899999999875
No 236
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.98 E-value=2.6e-09 Score=77.42 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=60.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCC-------C----CC---CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKF-------M----PD---CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 151 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~-------~----~~---~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 151 (173)
.++|+++|..++|||||+++++.... . .+ .+...|.+.......+......+.+.||||...|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 47899999999999999999986410 0 00 0112344444444445455567789999999888766
Q ss_pred hhhhhcCCCEEEEEEeCCC
Q psy13826 152 TRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 152 ~~~~~~~~~~~ilv~d~t~ 170 (173)
....+..+|++++|+|.+.
T Consensus 82 ~~~~~~~~D~~ilVvda~~ 100 (195)
T cd01884 82 MITGAAQMDGAILVVSATD 100 (195)
T ss_pred HHHHhhhCCEEEEEEECCC
Confidence 6667889999999999875
No 237
>KOG0394|consensus
Probab=98.97 E-value=9.5e-10 Score=77.16 Aligned_cols=88 Identities=25% Similarity=0.260 Sum_probs=56.2
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEE--eeccCcccchhhhhhhhhccccCCCCCcceeeEEE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL--VSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYI 90 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~--~s~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~ki~ 90 (173)
...+||+++||+|||||||++||+.++|...|..|++..++.. ..........-|..+...++++.+..-++-.=-++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 3578999999999999999999999999999999988655433 33333333343444444444444333333333445
Q ss_pred EEeCCCCChH
Q psy13826 91 IIGDMGVGKS 100 (173)
Q Consensus 91 l~G~~~vGKs 100 (173)
++=+-+.-||
T Consensus 87 lvydv~~~~S 96 (210)
T KOG0394|consen 87 LVYDVNNPKS 96 (210)
T ss_pred EEeecCChhh
Confidence 5545444443
No 238
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.97 E-value=2.3e-09 Score=85.57 Aligned_cols=87 Identities=17% Similarity=0.196 Sum_probs=60.5
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhC------C-C-----CCC--CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQ------K-F-----MPD--CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 149 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~------~-~-----~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 149 (173)
...++|+++|..++|||||+.++++. . + .+. .+...|.+.....+.+......+.+|||||+++|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 45689999999999999999999742 0 0 000 01123344444445555556678899999999886
Q ss_pred cchhhhhcCCCEEEEEEeCCC
Q psy13826 150 AVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 150 ~~~~~~~~~~~~~ilv~d~t~ 170 (173)
.........+|++++|+|+++
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~ 110 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATD 110 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCC
Confidence 444445567899999999976
No 239
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.96 E-value=4.7e-09 Score=80.41 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=51.7
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCC--CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc-------hhh
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV-------TRS 154 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~-------~~~ 154 (173)
...++|+++|.+||||||++|++++.+.. ....++ +..........+ ...+.++||||....... ...
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~-t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSE-GLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCc-ceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 56789999999999999999999987632 122211 111111112223 457899999997644221 111
Q ss_pred hh--cCCCEEEEEEeCC
Q psy13826 155 YY--RGAAGALMVIDVS 169 (173)
Q Consensus 155 ~~--~~~~~~ilv~d~t 169 (173)
++ ...|++++|.+++
T Consensus 113 ~l~~~g~DvVLyV~rLD 129 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLD 129 (313)
T ss_pred HhhcCCCCEEEEEeccC
Confidence 22 2589999996554
No 240
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.96 E-value=1.5e-09 Score=80.05 Aligned_cols=84 Identities=20% Similarity=0.251 Sum_probs=57.3
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCC---------------------------CCC--CCCceeeeeEEEEEEECCeEEEEE
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKF---------------------------MPD--CPHTIGVEFGTRIIEVHGEKIKLQ 138 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~---------------------------~~~--~~~t~~~~~~~~~~~~~~~~~~l~ 138 (173)
+|+++|..++|||||+.+++...- .+. .....|.+.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999963210 000 001123333333333444566889
Q ss_pred EEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 139 IWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 139 i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
+|||+|+..|.......++.+|++|+|+|.++.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~ 113 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKG 113 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence 999999987765555667889999999999874
No 241
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.95 E-value=4.1e-09 Score=88.24 Aligned_cols=82 Identities=20% Similarity=0.260 Sum_probs=56.4
Q ss_pred EEEEEeCCCCChHHHHHHHHhC---CCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ---KFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
-|.++|..++|||||++++.+. .+.++....+..+.....+...+ ...+.+||+||+++|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 4789999999999999999863 33333322222222222222222 2247899999999987666667889999999
Q ss_pred EEeCCC
Q psy13826 165 VIDVSH 170 (173)
Q Consensus 165 v~d~t~ 170 (173)
|+|+++
T Consensus 81 VVda~e 86 (614)
T PRK10512 81 VVACDD 86 (614)
T ss_pred EEECCC
Confidence 999876
No 242
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.95 E-value=8.6e-10 Score=87.35 Aligned_cols=81 Identities=23% Similarity=0.248 Sum_probs=56.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc---------cchhhh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR---------AVTRSY 155 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~---------~~~~~~ 155 (173)
..|+++|.||||||||.||+++.+. ..+++.+..+.. .......+.. +.+.||+|-+.-. ......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~-y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRI-YGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCc-cceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 4799999999999999999998863 344444444333 2233444444 7788999976322 112345
Q ss_pred hcCCCEEEEEEeCCC
Q psy13826 156 YRGAAGALMVIDVSH 170 (173)
Q Consensus 156 ~~~~~~~ilv~d~t~ 170 (173)
+..||++|||+|...
T Consensus 81 i~eADvilfvVD~~~ 95 (444)
T COG1160 81 IEEADVILFVVDGRE 95 (444)
T ss_pred HHhCCEEEEEEeCCC
Confidence 788999999999754
No 243
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.94 E-value=4.8e-10 Score=80.67 Aligned_cols=85 Identities=26% Similarity=0.319 Sum_probs=59.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCC----------------CCceeeeeEEEEEEEC--CeEEEEEEEeCCCccc
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDC----------------PHTIGVEFGTRIIEVH--GEKIKLQIWDTAGQER 147 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~----------------~~t~~~~~~~~~~~~~--~~~~~l~i~D~~g~~~ 147 (173)
..+|+++|..++|||||+.+++........ ....+.+......... .....+.++|+||+..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 578999999999999999999955421100 0001111111122222 4556788999999999
Q ss_pred cccchhhhhcCCCEEEEEEeCCC
Q psy13826 148 FRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 148 ~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
|.......++.+|++|+|+|..+
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~ 105 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDAND 105 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTT
T ss_pred eeecccceecccccceeeeeccc
Confidence 88777778999999999999875
No 244
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.91 E-value=4e-09 Score=89.71 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=61.9
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCC----CCCC------------ceeeeeEEEEEEECCeEEEEEEEeCCCccc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMP----DCPH------------TIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~----~~~~------------t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 147 (173)
+...+|+++|..++|||||+++++...-.. ...+ ..|.+.......+......+.+|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 346699999999999999999997422110 0000 122333333333333456789999999998
Q ss_pred cccchhhhhcCCCEEEEEEeCCCC
Q psy13826 148 FRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 148 ~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
|.......++.+|++|+|+|.++.
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g 111 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGG 111 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCC
Confidence 877778889999999999998863
No 245
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.91 E-value=6.7e-10 Score=79.00 Aligned_cols=79 Identities=27% Similarity=0.493 Sum_probs=51.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEE-CCeEEEEEEEeCCCcccccc-chhh--hhcCCCEEE
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRA-VTRS--YYRGAAGAL 163 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~-~~~~--~~~~~~~~i 163 (173)
.|+++|++|+|||+|..++..+.......+. ..+. ...+ +...-.+.+.|+||+++.+. +... +...+.++|
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 5899999999999999999999765543322 2211 1112 22334577889999998874 3343 578899999
Q ss_pred EEEeCCC
Q psy13826 164 MVIDVSH 170 (173)
Q Consensus 164 lv~d~t~ 170 (173)
+|.|.+.
T Consensus 81 fvvDSs~ 87 (181)
T PF09439_consen 81 FVVDSST 87 (181)
T ss_dssp EEEETTT
T ss_pred EEEeCcc
Confidence 9999863
No 246
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.91 E-value=1.8e-09 Score=71.90 Aligned_cols=34 Identities=41% Similarity=0.475 Sum_probs=28.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCC-Ccee
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCP-HTIG 120 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~-~t~~ 120 (173)
+|++++|+.|||||+|+.++....|...+. +|++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~ 35 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG 35 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh
Confidence 589999999999999999998887765554 5554
No 247
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.91 E-value=5.6e-09 Score=71.38 Aligned_cols=72 Identities=22% Similarity=0.366 Sum_probs=49.2
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc----cccccchhhhhcCCCEEE
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ----ERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~----~~~~~~~~~~~~~~~~~i 163 (173)
||+++|+.|+|||||++++.+.+. .+..|....+. + .+.||||. ..|....-..-.+||+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~-------~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY-------D-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec-------c-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999988654 33434333222 1 24599994 222222222345899999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
++.|.+++.+
T Consensus 69 ll~dat~~~~ 78 (143)
T PF10662_consen 69 LLQDATEPRS 78 (143)
T ss_pred EEecCCCCCc
Confidence 9999998764
No 248
>PLN03126 Elongation factor Tu; Provisional
Probab=98.90 E-value=7.2e-09 Score=84.38 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=61.3
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCC------CCC--------CCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQK------FMP--------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~------~~~--------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 148 (173)
....++++++|..++|||||++++++.. ... ..+...|.+.......+......+.++|+||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 3456899999999999999999999521 111 01122344443333334344557789999999988
Q ss_pred ccchhhhhcCCCEEEEEEeCCC
Q psy13826 149 RAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 149 ~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
-......+..+|++++|+|.++
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~ 179 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGAD 179 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCC
Confidence 7655566778999999999874
No 249
>PRK12736 elongation factor Tu; Reviewed
Probab=98.90 E-value=6.5e-09 Score=83.02 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=60.4
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCC------------CC--CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKF------------MP--DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 149 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~------------~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 149 (173)
...++|+++|..++|||||+.++++... .+ ..+...|.+.......+......+.+|||||+++|.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 3468999999999999999999986311 00 001123444444444454455577899999998886
Q ss_pred cchhhhhcCCCEEEEEEeCCC
Q psy13826 150 AVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 150 ~~~~~~~~~~~~~ilv~d~t~ 170 (173)
.........+|++++|+|.++
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~ 110 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATD 110 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCC
Confidence 544455678999999999875
No 250
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.88 E-value=1.4e-08 Score=76.18 Aligned_cols=88 Identities=24% Similarity=0.329 Sum_probs=54.7
Q ss_pred CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCC--CCC-ceeeeeEEEEEEECCeEEEEEEEeCCCccccc--c-c-
Q psy13826 79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD--CPH-TIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR--A-V- 151 (173)
Q Consensus 79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~--~~~-t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~--~-~- 151 (173)
..+.....++|+++|.+|||||||+|.+++...... ..+ |..... .....++ ..+.+|||||-.... . .
T Consensus 24 ~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~--~~~~~~g--~~i~vIDTPGl~~~~~~~~~~ 99 (249)
T cd01853 24 GKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVRE--VSGTVDG--FKLNIIDTPGLLESVMDQRVN 99 (249)
T ss_pred hhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEE--EEEEECC--eEEEEEECCCcCcchhhHHHH
Confidence 345666789999999999999999999998764321 222 222111 1222333 567899999965431 0 1
Q ss_pred ------hhhhhc--CCCEEEEEEeCCC
Q psy13826 152 ------TRSYYR--GAAGALMVIDVSH 170 (173)
Q Consensus 152 ------~~~~~~--~~~~~ilv~d~t~ 170 (173)
...++. ..+++++|..++.
T Consensus 100 ~~~~~~I~~~l~~~~idvIL~V~rlD~ 126 (249)
T cd01853 100 RKILSSIKRYLKKKTPDVVLYVDRLDM 126 (249)
T ss_pred HHHHHHHHHHHhccCCCEEEEEEcCCC
Confidence 122332 5788888865543
No 251
>KOG0077|consensus
Probab=98.88 E-value=1.9e-09 Score=74.45 Aligned_cols=85 Identities=18% Similarity=0.334 Sum_probs=66.4
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
+.+.-|++++|-.|+|||||++.+.++.. ..+.||.-.+. ..+.+ ..+.++.+|.+|+..-+..|..|+..+|++
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTS--E~l~I--g~m~ftt~DLGGH~qArr~wkdyf~~v~~i 91 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTS--EELSI--GGMTFTTFDLGGHLQARRVWKDYFPQVDAI 91 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCCh--HHhee--cCceEEEEccccHHHHHHHHHHHHhhhcee
Confidence 34456999999999999999999988764 34555543222 12233 455678899999998899999999999999
Q ss_pred EEEEeCCCCC
Q psy13826 163 LMVIDVSHVK 172 (173)
Q Consensus 163 ilv~d~t~~~ 172 (173)
++.+|+-|++
T Consensus 92 v~lvda~d~e 101 (193)
T KOG0077|consen 92 VYLVDAYDQE 101 (193)
T ss_pred EeeeehhhHH
Confidence 9999998875
No 252
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.88 E-value=1.1e-08 Score=81.45 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=51.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc----cchh---hhhcC
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR----AVTR---SYYRG 158 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----~~~~---~~~~~ 158 (173)
..|+|+|.||||||||++++++..... .++.|... ...-.+...+ ...+.++|+||...-. .+.. ..+..
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~-p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLV-PNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccC-cEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 478999999999999999999765322 22222211 1122233332 2357899999974311 1111 24788
Q ss_pred CCEEEEEEeCC
Q psy13826 159 AAGALMVIDVS 169 (173)
Q Consensus 159 ~~~~ilv~d~t 169 (173)
++++++|+|++
T Consensus 238 advlL~VVD~s 248 (390)
T PRK12298 238 CRVLLHLIDIA 248 (390)
T ss_pred CCEEEEEeccC
Confidence 99999999998
No 253
>KOG0098|consensus
Probab=98.87 E-value=1.7e-09 Score=76.07 Aligned_cols=41 Identities=54% Similarity=0.930 Sum_probs=37.6
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+++.+|++++||.|||||||+.||+.+.|...+..|+|..+
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvef 43 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEF 43 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeee
Confidence 56889999999999999999999999999999999977655
No 254
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.86 E-value=5.9e-09 Score=83.57 Aligned_cols=86 Identities=19% Similarity=0.169 Sum_probs=57.9
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCC------ceeeeeEE----------------EEEEECC------eEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH------TIGVEFGT----------------RIIEVHG------EKI 135 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~------t~~~~~~~----------------~~~~~~~------~~~ 135 (173)
+..++|+++|..++|||||+.++.+.. ...+.. |+...+.. .....++ ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~-~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVW-TDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCee-cccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 356899999999999999999996532 211111 11111100 0000011 135
Q ss_pred EEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 136 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
.+.+||+||+++|...+......+|++++|+|+++
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~ 115 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANE 115 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCC
Confidence 78999999999998777777788999999999986
No 255
>CHL00071 tufA elongation factor Tu
Probab=98.86 E-value=1.7e-08 Score=81.04 Aligned_cols=88 Identities=17% Similarity=0.154 Sum_probs=60.5
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCC--------------CCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP--------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 148 (173)
....++++++|.+++|||||++++++..-.. ..+...|.+.......+......+.+.||||+.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 3456899999999999999999999641100 00111333333333344444456778899999887
Q ss_pred ccchhhhhcCCCEEEEEEeCCC
Q psy13826 149 RAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 149 ~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
.......+..+|++++|+|.+.
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~ 110 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAAD 110 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCC
Confidence 6555566788999999999875
No 256
>KOG1191|consensus
Probab=98.85 E-value=7.9e-09 Score=82.42 Aligned_cols=86 Identities=22% Similarity=0.231 Sum_probs=56.5
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc-cccc--------h
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-FRAV--------T 152 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~-~~~~--------~ 152 (173)
.-+..++|+++|+||||||||+|.|.+.+..- -.|..|.+.+.....++-..+.+.+.||+|..+ -... .
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsI-VSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSI-VSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceE-eCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHH
Confidence 34456999999999999999999999886432 122233333333333333444566779999644 1111 1
Q ss_pred hhhhcCCCEEEEEEeC
Q psy13826 153 RSYYRGAAGALMVIDV 168 (173)
Q Consensus 153 ~~~~~~~~~~ilv~d~ 168 (173)
..-++.||++++|+|.
T Consensus 343 ~k~~~~advi~~vvda 358 (531)
T KOG1191|consen 343 RKRIERADVILLVVDA 358 (531)
T ss_pred HHHHhhcCEEEEEecc
Confidence 3356789999999998
No 257
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.84 E-value=7.7e-09 Score=71.05 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=40.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 145 (173)
+++++|.+|||||||+|++.+.+... .....|.+.....+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999887642 333344444455555654 4789999995
No 258
>KOG0079|consensus
Probab=98.84 E-value=7e-10 Score=75.22 Aligned_cols=90 Identities=26% Similarity=0.332 Sum_probs=61.0
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccchhhhhhhh--hccccCCCCCcceeeE
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALV--SKMSSSGQYSYSYIFK 88 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~k~l~~~~~--~~~~~~~~~~~~~~~k 88 (173)
.++..+|++++||+|||||+|+.||..+.|..+|..|+|..+.-......+...+.-+|+.. ..+...-...++..--
T Consensus 4 ~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 4 DYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred cHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence 46788999999999999999999999999999999999887765555554544444333321 1111112223344556
Q ss_pred EEEEeCCCCChH
Q psy13826 89 YIIIGDMGVGKS 100 (173)
Q Consensus 89 i~l~G~~~vGKs 100 (173)
++++-+---|-|
T Consensus 84 v~vVYDVTn~ES 95 (198)
T KOG0079|consen 84 VIVVYDVTNGES 95 (198)
T ss_pred EEEEEECcchhh
Confidence 677777666654
No 259
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.83 E-value=2.3e-08 Score=69.74 Aligned_cols=81 Identities=20% Similarity=0.262 Sum_probs=53.5
Q ss_pred EeeccCcccchhhhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeE
Q psy13826 55 LVSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 134 (173)
Q Consensus 55 ~~s~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 134 (173)
.+++..+.+...+...+...++. .....+++++|.++|||||+++++.+.. ...+.++.|.+.....+..+.
T Consensus 75 ~iSa~~~~gi~~L~~~l~~~~~~-----~~~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~-- 146 (156)
T cd01859 75 YVSAKERLGTKILRRTIKELAKI-----DGKEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITS-- 146 (156)
T ss_pred EEEccccccHHHHHHHHHHHHhh-----cCCCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC--
Confidence 34555555566665555444331 2245788999999999999999999654 344566777654433333333
Q ss_pred EEEEEEeCCC
Q psy13826 135 IKLQIWDTAG 144 (173)
Q Consensus 135 ~~l~i~D~~g 144 (173)
.+.+|||||
T Consensus 147 -~~~~~DtpG 155 (156)
T cd01859 147 -KIYLLDTPG 155 (156)
T ss_pred -CEEEEECcC
Confidence 588999998
No 260
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.81 E-value=1.1e-08 Score=81.98 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=55.3
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCC------CceeeeeEEEEE------------E----EC--C----eE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP------HTIGVEFGTRII------------E----VH--G----EK 134 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~------~t~~~~~~~~~~------------~----~~--~----~~ 134 (173)
....++|+++|..++|||||+.++.+. +.+.+. -|+...+....+ . .+ + ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~-~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGV-WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCe-ecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 345689999999999999999998653 211111 122211110000 0 00 0 13
Q ss_pred EEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 135 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
..+.+|||||+++|..........+|++++|+|++++
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~ 121 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEP 121 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 5789999999988764333344567999999999864
No 261
>KOG0086|consensus
Probab=98.80 E-value=2.6e-09 Score=72.91 Aligned_cols=45 Identities=42% Similarity=0.718 Sum_probs=39.7
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEE
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL 55 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~ 55 (173)
.||+.+|++++|++|.|||||++||..++|.+...-|+|..+-..
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSr 49 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSR 49 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecce
Confidence 478999999999999999999999999999998888888655333
No 262
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.80 E-value=2.7e-08 Score=81.20 Aligned_cols=87 Identities=20% Similarity=0.241 Sum_probs=58.7
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCC------------CC-------------------ceeeeeEEEEEEECC
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC------------PH-------------------TIGVEFGTRIIEVHG 132 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~------------~~-------------------t~~~~~~~~~~~~~~ 132 (173)
...++|+++|..++|||||+.+++...-.... .. ..|.+.......+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 45699999999999999999999854311000 00 112222222223334
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
....+.+|||||++.|.......+..+|++++|+|.+.
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~ 142 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARK 142 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 45578899999999886544445689999999999864
No 263
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.79 E-value=1.1e-08 Score=73.28 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=36.7
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
...+||+++|++|||||||+.||+.+.|..++.||++..+.
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~ 43 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT 43 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE
Confidence 45689999999999999999999999999999999876553
No 264
>KOG0088|consensus
Probab=98.78 E-value=2.9e-09 Score=73.08 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=39.6
Q ss_pred CCCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 9 ~~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
..+..+.||+|++|+..||||||+.||+.++|+...-+|....+.
T Consensus 7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~ 51 (218)
T KOG0088|consen 7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQ 51 (218)
T ss_pred ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHh
Confidence 446788999999999999999999999999999999888765553
No 265
>PRK00049 elongation factor Tu; Reviewed
Probab=98.77 E-value=4e-08 Score=78.56 Aligned_cols=87 Identities=18% Similarity=0.174 Sum_probs=60.8
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCC------------C--CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM------------P--DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 149 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~------------~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 149 (173)
...++|+++|..++|||||+.++++.... + ..+-..|.+.......+......+.+.||||+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 45789999999999999999999873100 0 001123444444444444444567788999998876
Q ss_pred cchhhhhcCCCEEEEEEeCCC
Q psy13826 150 AVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 150 ~~~~~~~~~~~~~ilv~d~t~ 170 (173)
......+..+|++++|+|.+.
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~ 110 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAAD 110 (396)
T ss_pred HHHHhhhccCCEEEEEEECCC
Confidence 555556789999999999875
No 266
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.77 E-value=2.5e-08 Score=80.00 Aligned_cols=84 Identities=18% Similarity=0.249 Sum_probs=56.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCC-------------------------------CCceeeeeEEEEEEECCeEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDC-------------------------------PHTIGVEFGTRIIEVHGEKI 135 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~-------------------------------~~t~~~~~~~~~~~~~~~~~ 135 (173)
++++++|..++|||||+.+++...-.... +...|.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 48999999999999999999743211000 00112222222223333445
Q ss_pred EEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 136 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
.+.+|||||+++|.......+..+|++|+|+|...
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~ 115 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARK 115 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 78899999999886555556789999999999864
No 267
>PTZ00258 GTP-binding protein; Provisional
Probab=98.76 E-value=4.9e-08 Score=77.35 Aligned_cols=86 Identities=22% Similarity=0.215 Sum_probs=54.0
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCe---------------EEEEEEEeCCCcccc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQERF 148 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~~~ 148 (173)
...++|.++|.||||||||++++.+........|....+.....+.+.+. ..++++.|+||...-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 45679999999999999999999776543221122211222223333322 234789999995421
Q ss_pred ----ccchhh---hhcCCCEEEEEEeCC
Q psy13826 149 ----RAVTRS---YYRGAAGALMVIDVS 169 (173)
Q Consensus 149 ----~~~~~~---~~~~~~~~ilv~d~t 169 (173)
..+... .++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 112222 467899999999974
No 268
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.76 E-value=1.9e-08 Score=73.81 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=47.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCC----CCceeeeeEEEEEEECCeEEEEEEEeCCCccccc--------cchh-
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDC----PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR--------AVTR- 153 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~--------~~~~- 153 (173)
++|+++|..|+||||++|.+++.+..... +.|.. .......+++.. +.++||||-.... .+..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~--~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~ 76 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQE--CQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRC 76 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS---EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccc--cceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHH
Confidence 48999999999999999999988754332 11222 222233556654 6788999942211 1111
Q ss_pred --hhhcCCCEEEEEEeCC
Q psy13826 154 --SYYRGAAGALMVIDVS 169 (173)
Q Consensus 154 --~~~~~~~~~ilv~d~t 169 (173)
......+++|||+.+.
T Consensus 77 l~~~~~g~ha~llVi~~~ 94 (212)
T PF04548_consen 77 LSLCSPGPHAFLLVIPLG 94 (212)
T ss_dssp HHHTTT-ESEEEEEEETT
T ss_pred HHhccCCCeEEEEEEecC
Confidence 1235689999999876
No 269
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.76 E-value=4.4e-08 Score=69.44 Aligned_cols=87 Identities=22% Similarity=0.270 Sum_probs=53.9
Q ss_pred EeeccCcccchhhhhhhhhcccc----CCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEE
Q psy13826 55 LVSTSQPITRKNLLWALVSKMSS----SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV 130 (173)
Q Consensus 55 ~~s~~~~~~~k~l~~~~~~~~~~----~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 130 (173)
.++...+.....+.......+.. .........++++++|.+|||||||++++.+..+. ...+..+.+.....+.+
T Consensus 80 ~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~ 158 (171)
T cd01856 80 FVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKI 158 (171)
T ss_pred EEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEe
Confidence 34555555555555555443210 01112234579999999999999999999987764 23333444454444455
Q ss_pred CCeEEEEEEEeCCCc
Q psy13826 131 HGEKIKLQIWDTAGQ 145 (173)
Q Consensus 131 ~~~~~~l~i~D~~g~ 145 (173)
+ ..+.+|||||.
T Consensus 159 ~---~~~~~iDtpG~ 170 (171)
T cd01856 159 S---PGIYLLDTPGI 170 (171)
T ss_pred c---CCEEEEECCCC
Confidence 4 35789999984
No 270
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.75 E-value=1.9e-08 Score=74.72 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=37.5
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
....+||++||++|||||||+.||+.+.|..+|.||++..+.
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~ 51 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT 51 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE
Confidence 357789999999999999999999999999999999876553
No 271
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.74 E-value=3.7e-08 Score=83.14 Aligned_cols=87 Identities=21% Similarity=0.231 Sum_probs=57.3
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCC------------CCCc-------------------eeeeeEEEEEEECC
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD------------CPHT-------------------IGVEFGTRIIEVHG 132 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~------------~~~t-------------------~~~~~~~~~~~~~~ 132 (173)
...++|+++|.+++|||||+++++...-... ...+ .|.+.......+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 3457899999999999999999996432110 0000 11112222222333
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
....+.++||||++.|.......+..+|++++|+|.+.
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~ 139 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARK 139 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 34467799999998886544456789999999999864
No 272
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.74 E-value=3.5e-08 Score=74.86 Aligned_cols=81 Identities=21% Similarity=0.171 Sum_probs=50.5
Q ss_pred EEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCe---------------EEEEEEEeCCCcccc----c
Q psy13826 89 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQERF----R 149 (173)
Q Consensus 89 i~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~~~----~ 149 (173)
+.++|.||||||||++++.+........|....+.....+.+.+. ...+++.|+||...- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 478999999999999999987653222222211222223333332 135889999995321 1
Q ss_pred cchhh---hhcCCCEEEEEEeCC
Q psy13826 150 AVTRS---YYRGAAGALMVIDVS 169 (173)
Q Consensus 150 ~~~~~---~~~~~~~~ilv~d~t 169 (173)
.+... .++.+|+++.|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 22223 357899999999874
No 273
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.74 E-value=1.1e-08 Score=73.27 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=34.1
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+|++++|++|||||||++||+.++|..++.+|++..+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~ 37 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNF 37 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE
Confidence 4999999999999999999999999999999987654
No 274
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.73 E-value=1.5e-08 Score=73.06 Aligned_cols=41 Identities=22% Similarity=0.436 Sum_probs=36.2
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+++.+||+++|+.|||||||+.||..+.|...+.+|++..+
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~ 43 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDY 43 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEE
Confidence 56779999999999999999999999999988888876544
No 275
>PRK12739 elongation factor G; Reviewed
Probab=98.72 E-value=2.9e-08 Score=84.51 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=59.7
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCC-------C------CCC---CceeeeeEEEEEEECCeEEEEEEEeCCCccc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-------P------DCP---HTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~-------~------~~~---~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 147 (173)
+...+|+++|..++|||||+++++...-. . ++. ...|.+.......+......+.++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 35678999999999999999999752100 0 000 0112222222222322445678999999988
Q ss_pred cccchhhhhcCCCEEEEEEeCCC
Q psy13826 148 FRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 148 ~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
|...+...++.+|++|+|+|.++
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~ 108 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVS 108 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCC
Confidence 87777788999999999999875
No 276
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.72 E-value=1.2e-07 Score=74.51 Aligned_cols=81 Identities=22% Similarity=0.290 Sum_probs=52.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCC-CCCC-ceeeeeEEEEEEECCeE---------------EEEEEEeCCCcccc-
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPH-TIGVEFGTRIIEVHGEK---------------IKLQIWDTAGQERF- 148 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~---------------~~l~i~D~~g~~~~- 148 (173)
+++.++|.||||||||++++.+..... +++. |+... ...+.+.+.. ..+++.|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~--~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPN--VGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccce--EEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 689999999999999999999876322 2222 22221 2222332211 25889999995421
Q ss_pred ---ccchhh---hhcCCCEEEEEEeCC
Q psy13826 149 ---RAVTRS---YYRGAAGALMVIDVS 169 (173)
Q Consensus 149 ---~~~~~~---~~~~~~~~ilv~d~t 169 (173)
..+... .++.+|++++|+|..
T Consensus 81 ~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 122222 367899999999985
No 277
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.71 E-value=2.3e-08 Score=71.40 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
+||+++|++|||||||+.||+.+.|...+.||++..+.
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~ 39 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT 39 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE
Confidence 69999999999999999999999999999999865543
No 278
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.71 E-value=2.3e-08 Score=71.32 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
+|++++|++|||||||+.||+.+.|..++.+|++..+.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~ 39 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS 39 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE
Confidence 69999999999999999999999999999999876553
No 279
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.70 E-value=6.8e-08 Score=73.71 Aligned_cols=84 Identities=26% Similarity=0.234 Sum_probs=56.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCC-CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhhhc
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPD-CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-------AVTRSYYR 157 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-------~~~~~~~~ 157 (173)
...++++|.|+||||||++.+.+.+.... |+-|. .+.-...+.+ +..++|+.|+||.-.-. ...-...|
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTT-l~~VPG~l~Y--~ga~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTT-LEPVPGMLEY--KGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCcee-cccccceEee--cCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 56899999999999999999998764332 33222 1222333344 45578899999842211 11223578
Q ss_pred CCCEEEEEEeCCCCC
Q psy13826 158 GAAGALMVIDVSHVK 172 (173)
Q Consensus 158 ~~~~~ilv~d~t~~~ 172 (173)
.||.+++|.|+....
T Consensus 140 ~ADlIiiVld~~~~~ 154 (365)
T COG1163 140 NADLIIIVLDVFEDP 154 (365)
T ss_pred cCCEEEEEEecCCCh
Confidence 999999999998654
No 280
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.69 E-value=2.3e-08 Score=70.63 Aligned_cols=39 Identities=26% Similarity=0.378 Sum_probs=35.0
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccc-cCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYF-LGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~-~~~~~t~~~~~ 52 (173)
..+||+++|++|||||||++||+.+.|. .++.+|.+..+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~ 42 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRY 42 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcce
Confidence 4689999999999999999999999998 88999977544
No 281
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.68 E-value=3.4e-08 Score=71.24 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
+||+++|++|||||||+.||+.+.|...+.||++..+.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~ 41 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS 41 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE
Confidence 69999999999999999999999999999999876553
No 282
>KOG1707|consensus
Probab=98.68 E-value=8.2e-08 Score=78.05 Aligned_cols=94 Identities=19% Similarity=0.280 Sum_probs=72.6
Q ss_pred CCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhc
Q psy13826 78 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 157 (173)
Q Consensus 78 ~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~ 157 (173)
..+......+++.++|+.++|||.+++.|+++.+...+..+....+....+...++.--+.+-|.+-. ....+...- .
T Consensus 417 ~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~ 494 (625)
T KOG1707|consen 417 KKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-A 494 (625)
T ss_pred ccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-c
Confidence 34556678999999999999999999999999888766666666666666777677777778787754 333333333 7
Q ss_pred CCCEEEEEEeCCCCCC
Q psy13826 158 GAAGALMVIDVSHVKE 173 (173)
Q Consensus 158 ~~~~~ilv~d~t~~~S 173 (173)
.||+++++||++|+.|
T Consensus 495 ~cDv~~~~YDsS~p~s 510 (625)
T KOG1707|consen 495 ACDVACLVYDSSNPRS 510 (625)
T ss_pred eeeeEEEecccCCchH
Confidence 7999999999999875
No 283
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.67 E-value=1.2e-07 Score=78.63 Aligned_cols=85 Identities=19% Similarity=0.290 Sum_probs=58.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc------ccchhhhh--c
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF------RAVTRSYY--R 157 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~------~~~~~~~~--~ 157 (173)
..+++++|.||||||||.|++++....-..-|.+.++.....+...+.. +++.|.||--.. +.+.+.|+ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 3569999999999999999999876433223334444444455555554 678899995332 23334444 3
Q ss_pred CCCEEEEEEeCCCCC
Q psy13826 158 GAAGALMVIDVSHVK 172 (173)
Q Consensus 158 ~~~~~ilv~d~t~~~ 172 (173)
+.|++|-|.|.+|.|
T Consensus 81 ~~D~ivnVvDAtnLe 95 (653)
T COG0370 81 KPDLIVNVVDATNLE 95 (653)
T ss_pred CCCEEEEEcccchHH
Confidence 579999999999976
No 284
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.66 E-value=3.8e-08 Score=69.98 Aligned_cols=38 Identities=32% Similarity=0.433 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
+||+++|++|||||||+.||+.+.|..++.||++..+.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~ 39 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 39 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE
Confidence 69999999999999999999999999999999876554
No 285
>KOG0081|consensus
Probab=98.64 E-value=2e-09 Score=73.84 Aligned_cols=47 Identities=34% Similarity=0.573 Sum_probs=40.2
Q ss_pred CCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce--eEEEEe
Q psy13826 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY--VCLRLV 56 (173)
Q Consensus 10 ~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~--~~~~~~ 56 (173)
..||+.+|.+.+||+||||||+++||++++|...+.+|+|- ...+.+
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvv 52 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVV 52 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEE
Confidence 46889999999999999999999999999999999999654 434443
No 286
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.64 E-value=1.2e-07 Score=68.22 Aligned_cols=78 Identities=18% Similarity=0.206 Sum_probs=49.6
Q ss_pred eeccCcccchhhhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCC-------CCCCceeeeeEEEEE
Q psy13826 56 VSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-------DCPHTIGVEFGTRII 128 (173)
Q Consensus 56 ~s~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~-------~~~~t~~~~~~~~~~ 128 (173)
+++..+.+...++..+...++ ...+++++|.+|||||||+|.+.+..... ...+..|.+.....+
T Consensus 105 vSA~~~~gi~eL~~~l~~~l~--------~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~ 176 (190)
T cd01855 105 ISAKKGWGVEELINAIKKLAK--------KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKI 176 (190)
T ss_pred EECCCCCCHHHHHHHHHHHhh--------cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEE
Confidence 455555555565555544332 23579999999999999999999864311 122233444445455
Q ss_pred EECCeEEEEEEEeCCC
Q psy13826 129 EVHGEKIKLQIWDTAG 144 (173)
Q Consensus 129 ~~~~~~~~l~i~D~~g 144 (173)
.++. .+.++||||
T Consensus 177 ~~~~---~~~~~DtPG 189 (190)
T cd01855 177 PLGN---GKKLYDTPG 189 (190)
T ss_pred ecCC---CCEEEeCcC
Confidence 5543 468999998
No 287
>PLN03110 Rab GTPase; Provisional
Probab=98.64 E-value=5.4e-08 Score=71.56 Aligned_cols=42 Identities=40% Similarity=0.716 Sum_probs=36.8
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.+++.+||+++|++|||||+|+++|..+.|...+.+|++..+
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~ 49 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEF 49 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEE
Confidence 356789999999999999999999999999888888877544
No 288
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.63 E-value=4.8e-08 Score=72.13 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+||++||++|||||||+.+|..+.|...|.||++..+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~ 38 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY 38 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce
Confidence 6999999999999999999999999999999987655
No 289
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.62 E-value=4.2e-08 Score=69.42 Aligned_cols=36 Identities=31% Similarity=0.598 Sum_probs=33.3
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
||+++|++|||||+|++||+.+.|..+|.+|++..+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~ 37 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDF 37 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEE
Confidence 899999999999999999999999999999977554
No 290
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.62 E-value=6.4e-08 Score=68.74 Aligned_cols=40 Identities=33% Similarity=0.595 Sum_probs=35.8
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
++.+||+++|++|||||||+++|..+.|...+.+|++..+
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~ 41 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDF 41 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEE
Confidence 4568999999999999999999999999999999977544
No 291
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.61 E-value=1.9e-07 Score=69.05 Aligned_cols=82 Identities=22% Similarity=0.284 Sum_probs=52.4
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCC-----------------------ceeeeeEE---------------EEEE
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPH-----------------------TIGVEFGT---------------RIIE 129 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~-----------------------t~~~~~~~---------------~~~~ 129 (173)
|++++|+.++|||||+.+|..+.|...... ..|.+..- ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999998766431110 01111000 0111
Q ss_pred ECCeEEEEEEEeCCCccccccchhhhh--cCCCEEEEEEeCCCC
Q psy13826 130 VHGEKIKLQIWDTAGQERFRAVTRSYY--RGAAGALMVIDVSHV 171 (173)
Q Consensus 130 ~~~~~~~l~i~D~~g~~~~~~~~~~~~--~~~~~~ilv~d~t~~ 171 (173)
. ....+.+.|+||+++|.......+ +.+|++++|+|....
T Consensus 81 ~--~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g 122 (224)
T cd04165 81 K--SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAG 122 (224)
T ss_pred e--CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCC
Confidence 1 123577889999998864433334 368999999998653
No 292
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.60 E-value=2.5e-07 Score=75.04 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=62.6
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCC--C------------------------CCC---CCceeeeeEEEEEEECCeEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKF--M------------------------PDC---PHTIGVEFGTRIIEVHGEKI 135 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~--~------------------------~~~---~~t~~~~~~~~~~~~~~~~~ 135 (173)
..++++++|..++|||||+-+++...- . .+. +...|.+.......+.....
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 458899999999999999998874210 0 000 01123333333444555666
Q ss_pred EEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 136 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
.+.+.|+||+++|.......++.+|++|+|+|+++
T Consensus 86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~ 120 (447)
T PLN00043 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120 (447)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc
Confidence 78899999999998877888899999999999986
No 293
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.60 E-value=5.3e-08 Score=70.63 Aligned_cols=41 Identities=39% Similarity=0.583 Sum_probs=36.0
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
++..+||+++|++|||||||+++|..+.|...+.+|++..+
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~ 43 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDF 43 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCcccccee
Confidence 45678999999999999999999999999988888977543
No 294
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.60 E-value=7.6e-08 Score=68.21 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=34.6
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
.+||+++|++|||||||+.||..++|...+.+|.+..+.
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~ 40 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK 40 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE
Confidence 369999999999999999999999999888899875543
No 295
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.60 E-value=4e-08 Score=71.56 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=33.8
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+||+++|++|||||||+++|+.+.|..++.+|++..+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~ 37 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSV 37 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeE
Confidence 4899999999999999999999999999999987543
No 296
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.60 E-value=5.1e-08 Score=68.55 Aligned_cols=39 Identities=44% Similarity=0.760 Sum_probs=35.0
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+.+||+++|++|||||+|+++|..+.|...+.+|.+..+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~ 40 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDF 40 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceE
Confidence 568999999999999999999999999999888876543
No 297
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.60 E-value=5e-08 Score=68.49 Aligned_cols=38 Identities=66% Similarity=1.021 Sum_probs=34.1
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.+||+++|++|||||||+++|..++|...+.+|.+..+
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~ 39 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEF 39 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeE
Confidence 47999999999999999999999999999888876544
No 298
>PLN03127 Elongation factor Tu; Provisional
Probab=98.60 E-value=2.7e-07 Score=74.77 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=59.7
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhC------CCC------CC--CCCceeeeeEEEEEEECCeEEEEEEEeCCCccc
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQ------KFM------PD--CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~------~~~------~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 147 (173)
.....++|+++|..++|||||++++.+. ... +. .+...|.+.......+......+.+.||||+++
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 3445689999999999999999999621 100 00 011123334344444544555778899999988
Q ss_pred cccchhhhhcCCCEEEEEEeCCC
Q psy13826 148 FRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 148 ~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
|-.........+|++++|+|.++
T Consensus 137 f~~~~~~g~~~aD~allVVda~~ 159 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPD 159 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCC
Confidence 76444445567999999999865
No 299
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.60 E-value=3.1e-07 Score=64.11 Aligned_cols=82 Identities=20% Similarity=0.195 Sum_probs=47.8
Q ss_pred eeccCcccchhhhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEE
Q psy13826 56 VSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 135 (173)
Q Consensus 56 ~s~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 135 (173)
++...+.+...++..+....... .....++++++|.+|||||||+|++.+..... ..++.|.+.....+..+.
T Consensus 75 iSa~~~~~~~~L~~~l~~~~~~~---~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~--- 147 (157)
T cd01858 75 ASINNPFGKGSLIQLLRQFSKLH---SDKKQISVGFIGYPNVGKSSIINTLRSKKVCK-VAPIPGETKVWQYITLMK--- 147 (157)
T ss_pred eeccccccHHHHHHHHHHHHhhh---ccccceEEEEEeCCCCChHHHHHHHhcCCcee-eCCCCCeeEeEEEEEcCC---
Confidence 34444455555555443332211 11235789999999999999999999865322 223344433333333332
Q ss_pred EEEEEeCCC
Q psy13826 136 KLQIWDTAG 144 (173)
Q Consensus 136 ~l~i~D~~g 144 (173)
.+.+.||||
T Consensus 148 ~~~liDtPG 156 (157)
T cd01858 148 RIYLIDCPG 156 (157)
T ss_pred CEEEEECcC
Confidence 256889998
No 300
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.59 E-value=3e-07 Score=74.60 Aligned_cols=87 Identities=17% Similarity=0.193 Sum_probs=61.7
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCC--CC------------------------CCCC---CceeeeeEEEEEEECCeE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQK--FM------------------------PDCP---HTIGVEFGTRIIEVHGEK 134 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~--~~------------------------~~~~---~t~~~~~~~~~~~~~~~~ 134 (173)
...++++++|..++|||||+.+++... .. .+.. -..|.+.......+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 345799999999999999999998521 00 0000 112333333344455556
Q ss_pred EEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 135 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
..+.|.|+||+++|.......+..+|++|+|+|.++
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~ 120 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTA 120 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCC
Confidence 678899999999997666667889999999999875
No 301
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.59 E-value=5.1e-08 Score=71.02 Aligned_cols=37 Identities=30% Similarity=0.504 Sum_probs=33.1
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+.|+++|++|||||||+.||+.+.|..++.+|++..+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~ 37 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDF 37 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEE
Confidence 3689999999999999999999999999999976544
No 302
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.58 E-value=9.6e-08 Score=66.26 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=33.3
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+||+++|++|||||||+++|+.++|...+.+|.+..+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~ 38 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY 38 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE
Confidence 6999999999999999999999999988888876544
No 303
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.58 E-value=3.1e-07 Score=70.25 Aligned_cols=84 Identities=19% Similarity=0.135 Sum_probs=53.0
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc--cccc-------hhhh
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--FRAV-------TRSY 155 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~--~~~~-------~~~~ 155 (173)
....+++-|.||||||||++.+.+.+......|...-.++...+ ..+...+|+.||||.-. .... ....
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhf--e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHF--ERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeee--ecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 56789999999999999999999887544333322112222222 33444678889999421 1111 1112
Q ss_pred hcCCCEEEEEEeCCC
Q psy13826 156 YRGAAGALMVIDVSH 170 (173)
Q Consensus 156 ~~~~~~~ilv~d~t~ 170 (173)
-.-+++++++||.+.
T Consensus 245 ~hl~~~IlF~~D~Se 259 (346)
T COG1084 245 RHLAGVILFLFDPSE 259 (346)
T ss_pred HHhcCeEEEEEcCcc
Confidence 233789999999874
No 304
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.58 E-value=9.1e-08 Score=70.54 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=36.7
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
...+||+++|++|||||+|+.||+.+.|...+.+|++..+.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~ 51 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH 51 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEE
Confidence 56789999999999999999999999999999999876543
No 305
>KOG0091|consensus
Probab=98.57 E-value=1.7e-08 Score=69.71 Aligned_cols=41 Identities=41% Similarity=0.541 Sum_probs=37.5
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+-|.++++++||+.||||||+++|+.++|.+-..||+|..+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdf 45 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDF 45 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHH
Confidence 56788999999999999999999999999999999988654
No 306
>PRK00007 elongation factor G; Reviewed
Probab=98.56 E-value=1.9e-07 Score=79.66 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=57.9
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhC--CCCC--CCC------------CceeeeeEEEEEEECCeEEEEEEEeCCCccc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMP--DCP------------HTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~--~~~~--~~~------------~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 147 (173)
+...+|+++|.+++|||||+++++.. .... ... ...|.+.......+..+...+.+.||||+..
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 34679999999999999999999741 1100 000 1222333222223322345678889999988
Q ss_pred cccchhhhhcCCCEEEEEEeCCC
Q psy13826 148 FRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 148 ~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
|.......++.+|++|+|+|.+.
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~ 110 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVG 110 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCC
Confidence 76556667889999999999764
No 307
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.56 E-value=1e-07 Score=66.44 Aligned_cols=37 Identities=30% Similarity=0.453 Sum_probs=33.2
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+||+++|++|||||||++||+.+.|...+.+|.+..+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~ 38 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY 38 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE
Confidence 6999999999999999999999999988888876443
No 308
>KOG0097|consensus
Probab=98.56 E-value=5.4e-08 Score=65.64 Aligned_cols=47 Identities=62% Similarity=0.987 Sum_probs=40.1
Q ss_pred CCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEe
Q psy13826 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLV 56 (173)
Q Consensus 10 ~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~ 56 (173)
+++.+.+|.+++||.|||||||+++|...+|-..-+-|++..+-..+
T Consensus 6 ynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtri 52 (215)
T KOG0097|consen 6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI 52 (215)
T ss_pred cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeE
Confidence 57888999999999999999999999999998887778876553333
No 309
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.55 E-value=5.2e-07 Score=68.90 Aligned_cols=60 Identities=27% Similarity=0.548 Sum_probs=41.7
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCC----------CCceeeeeEEEEEEECCeEEEEEEEeCCC
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC----------PHTIGVEFGTRIIEVHGEKIKLQIWDTAG 144 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g 144 (173)
..++|+++|++|+|||||++.+++....... ..+.........+.-++..+.|.++||+|
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpG 72 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCC
Confidence 4689999999999999999999987644331 12333333344445577889999999999
No 310
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.55 E-value=7.9e-08 Score=67.29 Aligned_cols=37 Identities=38% Similarity=0.699 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+||+++|++|||||+|+++|..++|...+.+|++..+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~ 37 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDF 37 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEE
Confidence 4899999999999999999999999998889977544
No 311
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.55 E-value=5.6e-07 Score=75.05 Aligned_cols=87 Identities=23% Similarity=0.366 Sum_probs=55.5
Q ss_pred CCCCcceeeEEEEEeCCCCChHHHHHHHHhCC-CCCCC--CCceeeeeEEEEEEECCeEEEEEEEeCCCccccc------
Q psy13826 79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQK-FMPDC--PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR------ 149 (173)
Q Consensus 79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~-~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~------ 149 (173)
+.++.+..++|+++|.+||||||++|.+++.. +.... ..|... .......++ ..+.++||||.....
T Consensus 111 g~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~--~ei~~~idG--~~L~VIDTPGL~dt~~dq~~n 186 (763)
T TIGR00993 111 GQDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV--QEIEGLVQG--VKIRVIDTPGLKSSASDQSKN 186 (763)
T ss_pred hccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE--EEEEEEECC--ceEEEEECCCCCccccchHHH
Confidence 44556677899999999999999999999876 33221 222221 111122333 467899999965431
Q ss_pred -cc---hhhhhc--CCCEEEEEEeCC
Q psy13826 150 -AV---TRSYYR--GAAGALMVIDVS 169 (173)
Q Consensus 150 -~~---~~~~~~--~~~~~ilv~d~t 169 (173)
.+ ...++. .+|++|+|..++
T Consensus 187 eeILk~Ik~~Lsk~gpDVVLlV~RLd 212 (763)
T TIGR00993 187 EKILSSVKKFIKKNPPDIVLYVDRLD 212 (763)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEeCC
Confidence 11 122333 489999998875
No 312
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.55 E-value=9.8e-08 Score=66.53 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=33.2
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
||+++|+++||||+|+.+|+.+.|...+.+|.+...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~ 36 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDS 36 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccc
Confidence 899999999999999999999999999999986544
No 313
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.54 E-value=8.4e-08 Score=66.95 Aligned_cols=37 Identities=30% Similarity=0.550 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+||+++|++|||||||+++++.++|...+.+|++..+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~ 37 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDY 37 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeE
Confidence 4899999999999999999999999999999977544
No 314
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.54 E-value=8.2e-08 Score=69.69 Aligned_cols=37 Identities=24% Similarity=0.497 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+||+++|++|||||||++||+.+.|...+.+|++..+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~ 37 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDF 37 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEE
Confidence 5999999999999999999999999999999987543
No 315
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.52 E-value=3.7e-07 Score=69.61 Aligned_cols=58 Identities=28% Similarity=0.407 Sum_probs=41.3
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 145 (173)
...++++++|.+|||||||+|++.+...... .+..|.+.....+.++. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 3468999999999999999999997653322 22344444444555543 3689999997
No 316
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.52 E-value=1.5e-07 Score=66.86 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+|++++|++|||||+|+.||+.+.|..++.+|++..+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~ 38 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY 38 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee
Confidence 6999999999999999999999999999999976544
No 317
>KOG0093|consensus
Probab=98.52 E-value=1.2e-07 Score=64.45 Aligned_cols=46 Identities=24% Similarity=0.481 Sum_probs=41.3
Q ss_pred CCCCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 8 ~~~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
.+.++|+.+|++++|++.|||||++.||..+.|...+..|+|..+.
T Consensus 14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFK 59 (193)
T KOG0093|consen 14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFK 59 (193)
T ss_pred ccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEE
Confidence 4567999999999999999999999999999999999999776653
No 318
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.51 E-value=4.9e-07 Score=69.31 Aligned_cols=58 Identities=28% Similarity=0.390 Sum_probs=42.0
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 145 (173)
...++++++|.+|||||||+|++.+..... ..+..|.+.....+.++. .+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 456899999999999999999999876422 233445555444555543 3679999996
No 319
>KOG3886|consensus
Probab=98.51 E-value=3.9e-08 Score=71.69 Aligned_cols=83 Identities=25% Similarity=0.408 Sum_probs=54.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCC-CC--CCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc-----ccchhhhhcC
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFM-PD--CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-----RAVTRSYYRG 158 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~-~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~~ 158 (173)
-||+++|.+|+||||+-..+..+-.. +. .-+|+.++.. .+.+- ..+-|.+||++||+.+ .......+++
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHs--h~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHS--HVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeeh--hhhhh-hhheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 48999999999999987665543211 11 1223333332 22222 2456899999999854 2234567889
Q ss_pred CCEEEEEEeCCCCC
Q psy13826 159 AAGALMVIDVSHVK 172 (173)
Q Consensus 159 ~~~~ilv~d~t~~~ 172 (173)
.++++.+||+..+|
T Consensus 82 V~vli~vFDves~e 95 (295)
T KOG3886|consen 82 VQVLIYVFDVESRE 95 (295)
T ss_pred heeeeeeeeccchh
Confidence 99999999998753
No 320
>KOG4252|consensus
Probab=98.51 E-value=1.3e-08 Score=71.33 Aligned_cols=70 Identities=21% Similarity=0.401 Sum_probs=51.5
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccchhhhhhhhhccccCCCCCccee
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKMSSSGQYSYSYI 86 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~k~l~~~~~~~~~~~~~~~~~~~ 86 (173)
.++..+|++++|..+|||++++.|||++.|...|.-|++..++...........+..+|+ .+++++++..
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWd------tagqeEfDaI 85 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWD------TAGQEEFDAI 85 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHH------hccchhHHHH
Confidence 456788999999999999999999999999999999998777554433333333334433 3456665543
No 321
>PRK12740 elongation factor G; Reviewed
Probab=98.50 E-value=2.4e-07 Score=78.81 Aligned_cols=80 Identities=20% Similarity=0.226 Sum_probs=54.4
Q ss_pred EeCCCCChHHHHHHHHhCCCC--C-----------CCC---CceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhh
Q psy13826 92 IGDMGVGKSCLLHQFTEQKFM--P-----------DCP---HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155 (173)
Q Consensus 92 ~G~~~vGKssl~~~~~~~~~~--~-----------~~~---~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~ 155 (173)
+|..++|||||+++++...-. . ++. ...|.+.......+......+.+|||||+..|...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 589999999999999643211 0 000 011222222222333345678999999998887777788
Q ss_pred hcCCCEEEEEEeCCCC
Q psy13826 156 YRGAAGALMVIDVSHV 171 (173)
Q Consensus 156 ~~~~~~~ilv~d~t~~ 171 (173)
++.+|++++|+|.++.
T Consensus 81 l~~aD~vllvvd~~~~ 96 (668)
T PRK12740 81 LRVLDGAVVVVCAVGG 96 (668)
T ss_pred HHHhCeEEEEEeCCCC
Confidence 9999999999999864
No 322
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.50 E-value=2e-07 Score=65.19 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
+||+++|++|||||||+.||..+.|...+.++.+..
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~ 36 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF 36 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce
Confidence 489999999999999999999999988777665543
No 323
>PTZ00369 Ras-like protein; Provisional
Probab=98.50 E-value=2e-07 Score=67.01 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=35.0
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
.+||+++|++|||||||++||..+.|...+.+|.+..+.
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~ 43 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR 43 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE
Confidence 479999999999999999999999999899898776553
No 324
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.49 E-value=4.5e-07 Score=64.42 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=40.3
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCC
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 144 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g 144 (173)
...++++++|.||||||||+|++.+..... ..+..|.+.....+.++. .+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~-~~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACN-VGATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccce-ecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 445899999999999999999999865422 233345444444444433 477899998
No 325
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.49 E-value=1.5e-07 Score=66.30 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=33.9
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
+||+++|++|||||||+.||..+.|...+.+|.+....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~ 38 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH 38 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEE
Confidence 49999999999999999999999999999999775443
No 326
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.48 E-value=2.5e-07 Score=64.92 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=33.3
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+||+++|++|||||+|+++|+.+.|...+.+|.+..+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~ 38 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY 38 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE
Confidence 6999999999999999999999999888888876544
No 327
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.47 E-value=2.4e-07 Score=64.81 Aligned_cols=37 Identities=30% Similarity=0.463 Sum_probs=33.4
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+||+++|++|||||||+.+|+.+.|...+.+|++..+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~ 38 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY 38 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE
Confidence 6999999999999999999999999988888876544
No 328
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.47 E-value=2.4e-07 Score=68.02 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+||+++|++|||||+|+++|..+.|...+.+|++..+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~ 37 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDF 37 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEE
Confidence 5999999999999999999999999999999977443
No 329
>PLN00023 GTP-binding protein; Provisional
Probab=98.47 E-value=1.5e-07 Score=72.69 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=36.9
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+...+||+++|++|||||||+++|+.+.|...+.+|++..+
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~ 58 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTV 58 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeE
Confidence 44678999999999999999999999999999999988654
No 330
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.47 E-value=3.3e-07 Score=64.21 Aligned_cols=37 Identities=32% Similarity=0.630 Sum_probs=33.3
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
+.+||+++|++|+|||+|++++..+.|...+.+|.+.
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~ 38 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGV 38 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccce
Confidence 5689999999999999999999999999888888654
No 331
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.47 E-value=1.1e-07 Score=69.00 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccc
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQD 49 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~ 49 (173)
+||+++|++|||||||++||+.+.|...+.||.+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~ 34 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEH 34 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccc
Confidence 5899999999999999999999999988888865
No 332
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.47 E-value=2.4e-07 Score=67.88 Aligned_cols=38 Identities=39% Similarity=0.506 Sum_probs=33.9
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.+||+++|++|||||+|+++|..+.|...+.+|++..+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~ 39 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDF 39 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEE
Confidence 57999999999999999999999999988888876543
No 333
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.47 E-value=3.1e-07 Score=67.37 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=35.0
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..+|++++|++|||||||++|+..+.|...+.+|++..+
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~ 46 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEV 46 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE
Confidence 457999999999999999999999999999999987654
No 334
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.46 E-value=3.4e-07 Score=64.40 Aligned_cols=39 Identities=56% Similarity=0.928 Sum_probs=34.2
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
++.+||+++|++|||||+|++++..+++...+.+|.+..
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~ 40 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE 40 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcccee
Confidence 467899999999999999999999999988887776543
No 335
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.46 E-value=2.3e-07 Score=66.73 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=33.5
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
||+++|++|||||+|+.||..+.|...+.+|++..+.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~ 38 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV 38 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE
Confidence 8999999999999999999999999989899765553
No 336
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.46 E-value=2e-07 Score=65.34 Aligned_cols=36 Identities=28% Similarity=0.534 Sum_probs=32.8
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
+||+++|++|||||+|++++..++|...+.+|.+..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~ 37 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID 37 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeE
Confidence 699999999999999999999999998888887643
No 337
>PLN03108 Rab family protein; Provisional
Probab=98.46 E-value=2.3e-07 Score=67.91 Aligned_cols=40 Identities=55% Similarity=0.899 Sum_probs=35.0
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
++.+||+++|++|||||+|+++++.++|...+.+|++..+
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~ 43 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF 43 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceE
Confidence 4678999999999999999999999999888888876543
No 338
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.45 E-value=2e-07 Score=73.33 Aligned_cols=83 Identities=12% Similarity=0.172 Sum_probs=42.5
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceee---eeEEEEEEECCeEEEEEEEeCCCccccccchhh-----h
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGV---EFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRS-----Y 155 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~-----~ 155 (173)
...++|++.|++|+|||||+|.+.+-.-.++.....|. +.....+.. .+.-.+.+||.||...-..-... -
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 35689999999999999999999763322221211111 111222221 22225789999996432222222 3
Q ss_pred hcCCCEEEEEEe
Q psy13826 156 YRGAAGALMVID 167 (173)
Q Consensus 156 ~~~~~~~ilv~d 167 (173)
+...|.+|++.+
T Consensus 112 ~~~yD~fiii~s 123 (376)
T PF05049_consen 112 FYRYDFFIIISS 123 (376)
T ss_dssp GGG-SEEEEEES
T ss_pred ccccCEEEEEeC
Confidence 456888888765
No 339
>KOG0090|consensus
Probab=98.45 E-value=2.2e-07 Score=66.97 Aligned_cols=77 Identities=19% Similarity=0.342 Sum_probs=55.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhc---CCCEEEE
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR---GAAGALM 164 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~---~~~~~il 164 (173)
.|+++|+.++|||+|..++..+.+...+. .+..+ ...+.+++.. .++.|.||+.+.+.-...++. .+-++||
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt-Siepn--~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTVT-SIEPN--EATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCeee-eeccc--eeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 58999999999999999999986544322 22222 2223333333 678899999988765555665 7999999
Q ss_pred EEeCC
Q psy13826 165 VIDVS 169 (173)
Q Consensus 165 v~d~t 169 (173)
|+|..
T Consensus 115 VVDSa 119 (238)
T KOG0090|consen 115 VVDSA 119 (238)
T ss_pred EEecc
Confidence 99975
No 340
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.44 E-value=1.1e-06 Score=68.36 Aligned_cols=39 Identities=18% Similarity=0.380 Sum_probs=35.5
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
..+.+.+||++||...+..|..++.+++++++|+|+++.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~ 197 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEY 197 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhc
Confidence 356788999999999999999999999999999999874
No 341
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.44 E-value=3.3e-07 Score=64.47 Aligned_cols=39 Identities=33% Similarity=0.493 Sum_probs=34.5
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..+||+++|+++||||+|+++|..+.|...+.+|++..+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~ 42 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEF 42 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEE
Confidence 568999999999999999999999999988888876543
No 342
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.44 E-value=2.3e-07 Score=64.93 Aligned_cols=35 Identities=34% Similarity=0.403 Sum_probs=31.2
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
+||+++|++|||||||+.||..+.|.+.+.+|.+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~ 35 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYAL 35 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceee
Confidence 58999999999999999999999998887777554
No 343
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.44 E-value=2.6e-07 Score=64.68 Aligned_cols=37 Identities=43% Similarity=0.728 Sum_probs=32.9
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
.+||+++|++|||||+|++|+..+.|...+.+|.+..
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~ 38 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVD 38 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee
Confidence 4799999999999999999999999988888886643
No 344
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.44 E-value=2.2e-07 Score=66.45 Aligned_cols=40 Identities=28% Similarity=0.369 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL 55 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~ 55 (173)
+||+++|++|||||+|+++|..+.|...+.+|++..+...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~ 40 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN 40 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE
Confidence 4899999999999999999999999998888876655433
No 345
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.44 E-value=8.1e-07 Score=62.43 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=28.5
Q ss_pred EEEEEeCCCccc----cccchhhhhcCCCEEEEEEeCCCC
Q psy13826 136 KLQIWDTAGQER----FRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 136 ~l~i~D~~g~~~----~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
.+.|+|+||-.. ...++..++..+|++|+|.+.++.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~ 141 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQD 141 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTST
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcc
Confidence 377899999632 236677888999999999998874
No 346
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.43 E-value=3.7e-07 Score=63.69 Aligned_cols=35 Identities=31% Similarity=0.508 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
+||+++|++|||||+|+.+|..+.|...+.+|.+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~ 36 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIED 36 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhh
Confidence 69999999999999999999999999888888653
No 347
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.43 E-value=2.4e-07 Score=66.64 Aligned_cols=37 Identities=22% Similarity=0.477 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCchhhhhHHhhhccccc-CcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFL-GLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~-~~~~t~~~~~ 52 (173)
+||+++|++|||||||+.+|+.++|.. .+.+|++..+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~ 38 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAF 38 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEE
Confidence 489999999999999999999999975 6888876544
No 348
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.42 E-value=3.2e-07 Score=64.17 Aligned_cols=39 Identities=44% Similarity=0.697 Sum_probs=34.0
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+.+||+++|+++||||+|++++..+.|...+.+|.+..+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 40 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEF 40 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEE
Confidence 457999999999999999999999999888888876433
No 349
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.42 E-value=3.4e-07 Score=63.72 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=33.2
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+||+++|++++|||||+++++.+.|...+.+|++..+
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~ 37 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDF 37 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEE
Confidence 4899999999999999999999999988888876544
No 350
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.41 E-value=4.1e-07 Score=64.22 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=33.2
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.||+++|++|||||+|+.+|..+.|...+.+|.+..+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~ 38 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY 38 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce
Confidence 5999999999999999999999999988888876544
No 351
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.41 E-value=3.3e-07 Score=68.77 Aligned_cols=35 Identities=17% Similarity=0.417 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
+||+++|++|||||||+++|+.++|...+.+|++.
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d 35 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIED 35 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhH
Confidence 58999999999999999999999999888889763
No 352
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.40 E-value=3.4e-07 Score=64.52 Aligned_cols=38 Identities=37% Similarity=0.561 Sum_probs=33.6
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.+||+++|++|||||+|+.+|+.+.|...+.+|.+..+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~ 39 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDF 39 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEE
Confidence 37999999999999999999999999988888876543
No 353
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.39 E-value=4.5e-07 Score=63.26 Aligned_cols=36 Identities=31% Similarity=0.504 Sum_probs=31.8
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
+||+++|++|||||||+++++.+.|...+.+|....
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~ 36 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS 36 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh
Confidence 499999999999999999999999988887776533
No 354
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.39 E-value=3.9e-07 Score=66.72 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=35.4
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL 55 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~ 55 (173)
+||+++|++|||||||++||.++.|...+.+|++..+...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~ 45 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAK 45 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEE
Confidence 7999999999999999999999999999999876554433
No 355
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.39 E-value=7e-07 Score=77.62 Aligned_cols=88 Identities=20% Similarity=0.285 Sum_probs=59.9
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCC--C---------CCCC---ceeeeeEEEE--EEE--------------CC
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFM--P---------DCPH---TIGVEFGTRI--IEV--------------HG 132 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~--~---------~~~~---t~~~~~~~~~--~~~--------------~~ 132 (173)
.+...+|+++|..++|||||+.+++...-. . ++.+ ..|.++.... +.. .+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 345679999999999999999999864311 0 0111 1111222111 111 12
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
....+.+.||||+.+|.......++.+|++|+|+|.++
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~ 133 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCC
Confidence 35678899999999998777778899999999999875
No 356
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.38 E-value=5.4e-07 Score=64.58 Aligned_cols=37 Identities=46% Similarity=0.654 Sum_probs=32.9
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+||+++|++|||||+|+++|..+.|...+.+|.+..+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~ 37 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDF 37 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEE
Confidence 4899999999999999999999999888888876443
No 357
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.38 E-value=5.9e-07 Score=63.32 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=32.7
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+||+++|++|+|||+|+++|..+.|...+.+|....+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~ 37 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY 37 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee
Confidence 4999999999999999999999999888888865443
No 358
>KOG0395|consensus
Probab=98.36 E-value=2.6e-07 Score=66.92 Aligned_cols=44 Identities=25% Similarity=0.383 Sum_probs=38.5
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeec
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVST 58 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~ 58 (173)
.+||+++|.+|||||+|+.||+.++|...|.||++..+.+....
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v 46 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTV 46 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEE
Confidence 47999999999999999999999999999999998766554433
No 359
>PTZ00416 elongation factor 2; Provisional
Probab=98.36 E-value=1.5e-06 Score=75.45 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=58.5
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCC--C---------CCCC---ceeeeeEEE--EEEEC--------CeEEEEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM--P---------DCPH---TIGVEFGTR--IIEVH--------GEKIKLQI 139 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~--~---------~~~~---t~~~~~~~~--~~~~~--------~~~~~l~i 139 (173)
+...+|+++|..++|||||+.+++...-. . ++.+ ..|.+.... .+... ++...+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 34569999999999999999999863211 0 0000 011122111 11222 22567889
Q ss_pred EeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 140 WDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 140 ~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
.||||+.+|.......++.+|++|+|+|.++
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~ 127 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVE 127 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCC
Confidence 9999999887666777899999999999875
No 360
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.35 E-value=4.2e-07 Score=65.37 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=32.2
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
||+++|++|||||||+++|+.+.|...+.+|.+..+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~ 36 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY 36 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE
Confidence 689999999999999999999999988888876544
No 361
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.35 E-value=7.2e-07 Score=63.04 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
+|++++|++|||||+|+.+|..+.|..++.+|...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~ 35 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFD 35 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee
Confidence 59999999999999999999999999999988643
No 362
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.35 E-value=8.5e-07 Score=61.75 Aligned_cols=38 Identities=29% Similarity=0.472 Sum_probs=33.3
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.+||+++|++|||||+|+++|..+.|...+.+|.+..+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~ 39 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY 39 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE
Confidence 36999999999999999999999999888888866444
No 363
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.34 E-value=1.1e-06 Score=68.33 Aligned_cols=57 Identities=23% Similarity=0.360 Sum_probs=44.4
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 145 (173)
..+++.++|-|||||||++|++++... ....+..|.+.....+.++.. +.++||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 346799999999999999999998865 334445577666667776665 789999995
No 364
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.34 E-value=6.8e-07 Score=62.36 Aligned_cols=37 Identities=19% Similarity=0.391 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCchhhhhHHhhhc--ccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQ--KYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~--~~~~~~~~t~~~~~ 52 (173)
+||+++|++|||||||++++..+ .|..++.+|.+..+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~ 39 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDF 39 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEE
Confidence 48999999999999999999865 78888988876544
No 365
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.33 E-value=8.1e-07 Score=62.45 Aligned_cols=37 Identities=30% Similarity=0.490 Sum_probs=33.3
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+|++++|++|||||+|+.+|.++.|...+.+|.+..+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~ 38 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY 38 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE
Confidence 6999999999999999999999999988888876544
No 366
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.32 E-value=2.5e-06 Score=73.27 Aligned_cols=87 Identities=23% Similarity=0.319 Sum_probs=60.0
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCC-----------CCCC---ceeeeeEEE----EEEECCeEEEEEEEeCCCc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-----------DCPH---TIGVEFGTR----IIEVHGEKIKLQIWDTAGQ 145 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~-----------~~~~---t~~~~~~~~----~~~~~~~~~~l~i~D~~g~ 145 (173)
+...+|+++|..++|||||+.+++...-.. ++.+ ..|.+.... .+..++....+.+.||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 346689999999999999999998532110 0110 001111111 1223445678889999999
Q ss_pred cccccchhhhhcCCCEEEEEEeCCC
Q psy13826 146 ERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 146 ~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
.+|.......++.+|++|+|+|...
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~ 122 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVE 122 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCC
Confidence 9987777788899999999999764
No 367
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.31 E-value=6.9e-07 Score=62.18 Aligned_cols=36 Identities=53% Similarity=0.820 Sum_probs=31.8
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
+|++++|+++||||+|++++..+.|...+.++.+..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~ 36 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVE 36 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee
Confidence 599999999999999999999999988887776543
No 368
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.30 E-value=3.3e-06 Score=68.63 Aligned_cols=85 Identities=16% Similarity=0.330 Sum_probs=61.2
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC--CeEEEEEEEeCCCccccccchhhhhcC---
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH--GEKIKLQIWDTAGQERFRAVTRSYYRG--- 158 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~l~i~D~~g~~~~~~~~~~~~~~--- 158 (173)
...-.|+++|+.++|||+|+.+|.+.+ ++.++.+.+|....+.-+ .....+.+|...|...+..+.+..+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 344589999999999999999987643 456678888766554332 123568899998877776666554443
Q ss_pred -CCEEEEEEeCCCC
Q psy13826 159 -AAGALMVIDVSHV 171 (173)
Q Consensus 159 -~~~~ilv~d~t~~ 171 (173)
--+||+|.|++.|
T Consensus 100 ~~t~vvIvlDlS~P 113 (472)
T PF05783_consen 100 PNTLVVIVLDLSKP 113 (472)
T ss_pred cceEEEEEecCCCh
Confidence 2478889999876
No 369
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.28 E-value=9e-07 Score=62.20 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=31.9
Q ss_pred EEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 18 YIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 18 ~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
|+++|++|||||+|++||+.+.|...+.||.++..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~ 36 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS 36 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce
Confidence 78999999999999999999999999999987654
No 370
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.27 E-value=1.1e-06 Score=61.15 Aligned_cols=37 Identities=32% Similarity=0.481 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+||+++|++|||||||+.+++.+.|...+.++.+..+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~ 37 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY 37 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE
Confidence 4999999999999999999999999888888765433
No 371
>KOG0393|consensus
Probab=98.27 E-value=3.9e-07 Score=65.47 Aligned_cols=38 Identities=29% Similarity=0.374 Sum_probs=34.4
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
..+|+++|||.+||||||+..|..+.|+..|.||+=..
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdn 40 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDN 40 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEcc
Confidence 45799999999999999999999999999999996433
No 372
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.27 E-value=6.3e-07 Score=59.48 Aligned_cols=34 Identities=32% Similarity=0.375 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcc-cccc
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQ-LTQD 49 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~-~t~~ 49 (173)
+|++++|+.|||||+|+.||.++.|...+. +|++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~ 35 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG 35 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh
Confidence 499999999999999999999999987665 5655
No 373
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.27 E-value=1.1e-06 Score=61.19 Aligned_cols=37 Identities=30% Similarity=0.504 Sum_probs=32.8
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+||+++|++++|||+|++++..+.+...+.+|.+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 38 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAF 38 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeE
Confidence 6999999999999999999999999887777876543
No 374
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.26 E-value=8.1e-07 Score=62.18 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=29.9
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccccCcccccc
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQD 49 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~ 49 (173)
||+++|++|||||+|+.+|+.+.|...+.+|.+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~ 33 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLE 33 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChH
Confidence 689999999999999999999999888888764
No 375
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.26 E-value=8.1e-07 Score=65.58 Aligned_cols=34 Identities=35% Similarity=0.627 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccc-cCcccccc
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYF-LGLQLTQD 49 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~-~~~~~t~~ 49 (173)
+||+++|++|||||+|+.+|+.++|. ..+.++.+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~ 35 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGD 35 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcc
Confidence 59999999999999999999999997 67777764
No 376
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.25 E-value=2.7e-06 Score=59.59 Aligned_cols=38 Identities=37% Similarity=0.755 Sum_probs=33.0
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
...+||+++|++|||||+|+.++..+.+...+.+|++.
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~ 42 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGV 42 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee
Confidence 45689999999999999999999999888877777653
No 377
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=5.5e-06 Score=65.33 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=61.6
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCC--CCC---------------------------CCCCceeeeeEEEEEEECCeEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQK--FMP---------------------------DCPHTIGVEFGTRIIEVHGEKI 135 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~--~~~---------------------------~~~~t~~~~~~~~~~~~~~~~~ 135 (173)
..++++++|+..+|||||+-|++..- +.. ......|.++......+.....
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 45899999999999999999998542 111 0011123444444444555566
Q ss_pred EEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826 136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 136 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
.+.|.|+||+..|-.-.-.-..+||+.|||+|..+.+
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e 122 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE 122 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc
Confidence 8999999998887644444567899999999998764
No 378
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.23 E-value=1.2e-06 Score=63.09 Aligned_cols=37 Identities=35% Similarity=0.684 Sum_probs=31.1
Q ss_pred eEEEEEcCCCCchhhhhHHhhhccccc-CcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFL-GLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~-~~~~t~~~~~ 52 (173)
+||+++|++|||||||+.||..+.|.. .+.+|.+..+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~ 38 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDF 38 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCccccee
Confidence 599999999999999999999999964 5677765443
No 379
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.23 E-value=2.1e-06 Score=60.26 Aligned_cols=36 Identities=36% Similarity=0.573 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
+||+++|+++||||||++++.++.+...+.+|.+..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~ 36 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD 36 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceE
Confidence 489999999999999999999999988887776643
No 380
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.22 E-value=1.5e-06 Score=60.66 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+||+++|+++||||||+.|+..+.|. .+.||++...
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~ 36 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV 36 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce
Confidence 38999999999999999999999997 4778877543
No 381
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.21 E-value=2.1e-06 Score=60.24 Aligned_cols=33 Identities=27% Similarity=0.515 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCccccc
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQ 48 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~ 48 (173)
.||+++|++|||||+|++||..++|...+..+.
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~ 33 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL 33 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc
Confidence 389999999999999999999999987665543
No 382
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.21 E-value=1.7e-06 Score=61.85 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=31.7
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.+||+++|+++||||+|+.|+..+.|.. +.||.+..+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~ 53 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV 53 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce
Confidence 4799999999999999999999998975 667877544
No 383
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.21 E-value=1.9e-06 Score=63.60 Aligned_cols=36 Identities=33% Similarity=0.563 Sum_probs=30.9
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+||+++|+++||||+|++||..++|.. +.+|++..+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~ 36 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAF 36 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEE
Confidence 489999999999999999999999975 567776543
No 384
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.20 E-value=1.4e-06 Score=59.38 Aligned_cols=32 Identities=25% Similarity=0.500 Sum_probs=26.8
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
||+++|++|||||||++||+.+.+. +.+|.+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~ 33 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV 33 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE
Confidence 8999999999999999999988773 4556443
No 385
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.20 E-value=1.9e-06 Score=61.15 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=31.6
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.+||+++|++|||||||+.|+..++|. .+.||++...
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~ 49 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNV 49 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccce
Confidence 479999999999999999999988885 4678877544
No 386
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.19 E-value=1e-05 Score=63.69 Aligned_cols=82 Identities=20% Similarity=0.109 Sum_probs=54.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCC-CC-CCCCc-eeeeeEEEEEEECCe---------------EEEEEEEeCCCcccc
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKF-MP-DCPHT-IGVEFGTRIIEVHGE---------------KIKLQIWDTAGQERF 148 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~-~~-~~~~t-~~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~~~ 148 (173)
+|+.++|.|+||||||.+.+.+... .. +|+.| +..+ ...+.+.+. ...+++.|.+|.-.-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~--~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPN--AGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCc--eeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 6899999999999999999998765 33 33322 2222 223333332 245788899995431
Q ss_pred ----ccch---hhhhcCCCEEEEEEeCCC
Q psy13826 149 ----RAVT---RSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 149 ----~~~~---~~~~~~~~~~ilv~d~t~ 170 (173)
..+. -..++.+|+++.|.|..+
T Consensus 81 As~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 81 ASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred hhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 1222 235788999999999754
No 387
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.18 E-value=2.6e-06 Score=59.17 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=31.1
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
+||+++|+++||||+|++++..+.+...+.++.+.
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~ 35 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGI 35 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceee
Confidence 48999999999999999999999998877777654
No 388
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.18 E-value=3.2e-06 Score=58.79 Aligned_cols=36 Identities=47% Similarity=0.654 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
+||+++|++++|||+|++++..+.+...+.++.+..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~ 36 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVD 36 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeE
Confidence 599999999999999999999999988777776643
No 389
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.17 E-value=2e-06 Score=60.63 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=30.9
Q ss_pred EEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 18 YIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 18 ~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
|+++|++|||||||+.+|..+.|...+.+|....+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~ 35 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY 35 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee
Confidence 58999999999999999999999988888865544
No 390
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.16 E-value=3.2e-06 Score=59.22 Aligned_cols=35 Identities=34% Similarity=0.497 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
+||+++|++|||||+|+++++.+.+...+.+|...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~ 35 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFD 35 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee
Confidence 58999999999999999999999997777776543
No 391
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.16 E-value=2.6e-06 Score=60.89 Aligned_cols=37 Identities=14% Similarity=0.203 Sum_probs=32.2
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.+||+++|+++||||+|++|+..++|. .+.||++...
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~ 53 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV 53 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE
Confidence 479999999999999999999998886 4678877654
No 392
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.15 E-value=1e-05 Score=59.88 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=50.2
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
.....|+++|.+|+|||+|++.+....-........|. + .+ .......+.+.||+|.- ..+. ...+.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEE
Confidence 34578999999999999999999865211111111121 1 11 11234457788999853 2222 3457899999
Q ss_pred EEEeCCC
Q psy13826 164 MVIDVSH 170 (173)
Q Consensus 164 lv~d~t~ 170 (173)
+++|.+.
T Consensus 109 lviDa~~ 115 (225)
T cd01882 109 LLIDASF 115 (225)
T ss_pred EEEecCc
Confidence 9999875
No 393
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=9.3e-06 Score=65.85 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=63.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG-EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.=|+++|.-..|||||+..+-..........-+.-.+....+..+. ..-.+.+.||||++.|..++..-..-+|+++||
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV 85 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV 85 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence 3488999999999999999987765443333333333344444431 234678889999999999999888999999999
Q ss_pred EeCCC
Q psy13826 166 IDVSH 170 (173)
Q Consensus 166 ~d~t~ 170 (173)
+|+.|
T Consensus 86 Va~dD 90 (509)
T COG0532 86 VAADD 90 (509)
T ss_pred EEccC
Confidence 99876
No 394
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.14 E-value=3.4e-06 Score=59.83 Aligned_cols=35 Identities=31% Similarity=0.382 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
.||+++|++|||||+|+.++..+.|...+.+|.+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~ 36 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIEN 36 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhh
Confidence 59999999999999999999999998877777543
No 395
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.14 E-value=1.7e-06 Score=62.66 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=28.1
Q ss_pred eeEEEEEcCCCCchhhhhH-Hhhhc-----ccccCcccccc
Q psy13826 15 IFKYIIIGDMGVGKSCLLH-QFTEQ-----KYFLGLQLTQD 49 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~-~~~~~-----~~~~~~~~t~~ 49 (173)
.+||+++|++|||||||+. +++.+ .|..++.||++
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~ 42 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVW 42 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCcee
Confidence 3699999999999999996 66544 45677888874
No 396
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.13 E-value=3.3e-06 Score=60.40 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=30.8
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.+||+++|++|||||||++++..+.|... .+|.+...
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~ 39 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNT 39 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccce
Confidence 47999999999999999999999988754 56665433
No 397
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.13 E-value=2.9e-06 Score=59.78 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=30.1
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
||+++|+++||||+|+.|++.+.|.. +.+|++...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~ 35 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNV 35 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeE
Confidence 68999999999999999999998865 778877544
No 398
>PLN03118 Rab family protein; Provisional
Probab=98.12 E-value=3.7e-06 Score=61.47 Aligned_cols=39 Identities=41% Similarity=0.576 Sum_probs=32.3
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
.....+||+++|++|||||+|+.+|+.+.+. .+.+|.+.
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~ 48 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGV 48 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCcee
Confidence 3456789999999999999999999998874 46667654
No 399
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.12 E-value=3.4e-06 Score=59.03 Aligned_cols=58 Identities=22% Similarity=0.338 Sum_probs=32.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCC--CCC--ceee--eeEEEEEEECCeEEEEEEEeCCCcccc
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPD--CPH--TIGV--EFGTRIIEVHGEKIKLQIWDTAGQERF 148 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~--~~~--t~~~--~~~~~~~~~~~~~~~l~i~D~~g~~~~ 148 (173)
.++++|++|||||||+|.+.+..-... .+. ..|. +.....+.+.+.. .+.||||-..+
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~ 100 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSF 100 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCcc
Confidence 689999999999999999998742211 110 1111 1223344453332 46799996544
No 400
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.12 E-value=4.6e-06 Score=57.73 Aligned_cols=35 Identities=29% Similarity=0.500 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
+||+++|++|||||+|+++++.+.+...+.++...
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~ 35 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQA 35 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccce
Confidence 59999999999999999999999998776666543
No 401
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.12 E-value=4.2e-06 Score=59.99 Aligned_cols=37 Identities=30% Similarity=0.279 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.|++++|++|+|||+|++++..+.|...+.+|....+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~ 38 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY 38 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE
Confidence 5999999999999999999999999888877755443
No 402
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.12 E-value=4.4e-06 Score=57.33 Aligned_cols=37 Identities=38% Similarity=0.574 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+||+++|++++|||||++++..+.+...+.+|.+..+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~ 37 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDF 37 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeee
Confidence 4899999999999999999999999888777766544
No 403
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.11 E-value=3.4e-06 Score=59.51 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=31.2
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.+||+++|+++||||||++++..++|.. +.||++...
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~ 45 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV 45 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccce
Confidence 4799999999999999999999888864 667776544
No 404
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.11 E-value=3e-06 Score=58.88 Aligned_cols=36 Identities=42% Similarity=0.599 Sum_probs=31.7
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
+||+++|++++|||+|++++..+.+...+.+|.+..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~ 36 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVD 36 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccce
Confidence 599999999999999999999999987777776644
No 405
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.08 E-value=4.5e-06 Score=57.36 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=32.2
Q ss_pred EEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 18 YIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 18 ~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
|+++|++|||||||++++..+.|...+.+|.+....
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~ 37 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR 37 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE
Confidence 789999999999999999999999998888776553
No 406
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.07 E-value=1.4e-05 Score=55.63 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=35.6
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCC
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 144 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g 144 (173)
...+++++|.+|||||||+|.+.+..... ..+..+.+.....+..+ ..+.+.||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEEEec---CCEEEEECCC
Confidence 45789999999999999999999865311 11111212222223333 2467889998
No 407
>PRK13796 GTPase YqeH; Provisional
Probab=98.07 E-value=1.4e-05 Score=63.32 Aligned_cols=80 Identities=20% Similarity=0.179 Sum_probs=47.5
Q ss_pred EeeccCcccchhhhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCC----CCCCceeeeeEEEEEEE
Q psy13826 55 LVSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP----DCPHTIGVEFGTRIIEV 130 (173)
Q Consensus 55 ~~s~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~----~~~~t~~~~~~~~~~~~ 130 (173)
.+++..+.+.+.++..+.... ...+++++|.+|||||||+|+++...... ..++..|.+.....+.+
T Consensus 138 ~vSAk~g~gI~eL~~~I~~~~---------~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l 208 (365)
T PRK13796 138 LISAQKGHGIDELLEAIEKYR---------EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL 208 (365)
T ss_pred EEECCCCCCHHHHHHHHHHhc---------CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc
Confidence 345555555555555543321 12479999999999999999998643111 11222333444444445
Q ss_pred CCeEEEEEEEeCCCcc
Q psy13826 131 HGEKIKLQIWDTAGQE 146 (173)
Q Consensus 131 ~~~~~~l~i~D~~g~~ 146 (173)
++. ..++||||-.
T Consensus 209 ~~~---~~l~DTPGi~ 221 (365)
T PRK13796 209 DDG---SFLYDTPGII 221 (365)
T ss_pred CCC---cEEEECCCcc
Confidence 443 3688999963
No 408
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=2.2e-05 Score=61.36 Aligned_cols=85 Identities=21% Similarity=0.239 Sum_probs=54.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCC-CCCC-CceeeeeEEEEEEE----------C----CeEEEEEEEeCCCcc----
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCP-HTIGVEFGTRIIEV----------H----GEKIKLQIWDTAGQE---- 146 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~-~t~~~~~~~~~~~~----------~----~~~~~l~i~D~~g~~---- 146 (173)
+++-++|.||||||||.+.+....-. .+|+ .|+..+.....+.. . -....+++.|.+|.-
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 68999999999999999999987643 2333 13332222211110 1 123568899999853
Q ss_pred ccccchhhh---hcCCCEEEEEEeCCCC
Q psy13826 147 RFRAVTRSY---YRGAAGALMVIDVSHV 171 (173)
Q Consensus 147 ~~~~~~~~~---~~~~~~~ilv~d~t~~ 171 (173)
.-+.+...| +|++|+++-|+|....
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~d 110 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFGD 110 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecCC
Confidence 223444444 5889999999987643
No 409
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.07 E-value=4.1e-06 Score=60.66 Aligned_cols=33 Identities=24% Similarity=0.516 Sum_probs=30.2
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccccCcccccc
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQD 49 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~ 49 (173)
||+++|++|||||+|+.+|+.+.|...+.+|..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~ 33 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE 33 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh
Confidence 689999999999999999999999988887764
No 410
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.06 E-value=3.5e-06 Score=55.67 Aligned_cols=25 Identities=32% Similarity=0.719 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccc
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYF 41 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~ 41 (173)
||+++|++|||||+|+++++.+.+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc
Confidence 7999999999999999999999887
No 411
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.05 E-value=1.9e-05 Score=61.46 Aligned_cols=62 Identities=19% Similarity=0.440 Sum_probs=47.8
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCC----------CCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD----------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 145 (173)
...|.|.++|++|.|||||+|.+++.....+ ..+++.+......+.-++..+.|.+.||+|-
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGf 92 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGF 92 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCc
Confidence 4678999999999999999999998743322 3455656555555556788899999999993
No 412
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.05 E-value=4.3e-06 Score=58.03 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=30.0
Q ss_pred EEEEEcCCCCchhhhhHHhhhcc-cccCcccccceeE
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQK-YFLGLQLTQDYVC 52 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~-~~~~~~~t~~~~~ 52 (173)
+|+++|+++||||+|++++..+. +...+.+|++...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~ 37 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV 37 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce
Confidence 48999999999999999999876 4667788877543
No 413
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.03 E-value=5.5e-06 Score=58.31 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=30.2
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+|+++|++|||||+|+++++.+ |...+.+|++...
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~ 35 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP 35 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE
Confidence 4899999999999999999976 8888889987643
No 414
>PRK12288 GTPase RsgA; Reviewed
Probab=98.02 E-value=1.2e-05 Score=63.24 Aligned_cols=58 Identities=24% Similarity=0.437 Sum_probs=35.3
Q ss_pred EEEEeCCCCChHHHHHHHHhCCCCC--CCCC--cee--eeeEEEEEEECCeEEEEEEEeCCCccccc
Q psy13826 89 YIIIGDMGVGKSCLLHQFTEQKFMP--DCPH--TIG--VEFGTRIIEVHGEKIKLQIWDTAGQERFR 149 (173)
Q Consensus 89 i~l~G~~~vGKssl~~~~~~~~~~~--~~~~--t~~--~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 149 (173)
++++|.+|||||||+|++++..-.. +.+. ..| .+.....+.+.+.. .+.||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 7899999999999999999764321 1111 011 12223334443322 378999976553
No 415
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.01 E-value=7.2e-06 Score=56.61 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=30.3
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
||+++|++|+|||+|+.++..+.+...+.++.+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~ 34 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIED 34 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhH
Confidence 6899999999999999999999898888887653
No 416
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.01 E-value=7.1e-06 Score=54.48 Aligned_cols=73 Identities=21% Similarity=0.285 Sum_probs=48.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc----ccccchhhhhcCCCEEE
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----RFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----~~~~~~~~~~~~~~~~i 163 (173)
|++++|..|+|||+|.+.+-++.. -|..|..+++. .+. ..||+|.- .+....-....++++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~-------d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFN-------DKG----DIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceeecc-------Ccc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 789999999999999999988753 23334433332 221 34999842 11111223457899999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
+|-..++++|
T Consensus 70 ~v~~and~~s 79 (148)
T COG4917 70 YVHAANDPES 79 (148)
T ss_pred eeecccCccc
Confidence 9999998875
No 417
>PRK12289 GTPase RsgA; Reviewed
Probab=98.00 E-value=1.4e-05 Score=62.99 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=35.0
Q ss_pred EEEEeCCCCChHHHHHHHHhCCCCC--CCCC--cee--eeeEEEEEEECCeEEEEEEEeCCCcccc
Q psy13826 89 YIIIGDMGVGKSCLLHQFTEQKFMP--DCPH--TIG--VEFGTRIIEVHGEKIKLQIWDTAGQERF 148 (173)
Q Consensus 89 i~l~G~~~vGKssl~~~~~~~~~~~--~~~~--t~~--~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 148 (173)
++++|.+|||||||+|.+++..-.. ..+. ..| .+.....+.+.+.. .+.||||-..+
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence 7999999999999999999764321 1111 000 12233444453332 57899996544
No 418
>KOG1547|consensus
Probab=97.99 E-value=4.3e-05 Score=56.49 Aligned_cols=62 Identities=31% Similarity=0.533 Sum_probs=46.4
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCC---------CCCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMP---------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~---------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 145 (173)
...|+|.++|.+|.|||||++.+....... .+..|++....+..+.-++.+.++.+.||+|-
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGf 114 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGF 114 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCc
Confidence 356899999999999999999887544322 23345555555556666778889999999993
No 419
>KOG0705|consensus
Probab=97.99 E-value=7.2e-06 Score=66.74 Aligned_cols=82 Identities=22% Similarity=0.361 Sum_probs=66.3
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+|+-++|..++|||+|++||+.+.|..+..|.-| .+ .+.+.++++...+-+.|.+|.. ...|....|++|+
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~-~~-kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIf 101 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG-RF-KKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVF 101 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCc-cc-eeeEEeeccceEeeeecccCCc-----hhhhhhhccceEE
Confidence 468999999999999999999999998877665444 33 4566678888899999998843 2457778999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
||.+.+.+|
T Consensus 102 vf~~~d~~s 110 (749)
T KOG0705|consen 102 VFSVEDEQS 110 (749)
T ss_pred EEEeccccC
Confidence 999988764
No 420
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.99 E-value=1.8e-05 Score=62.63 Aligned_cols=81 Identities=21% Similarity=0.198 Sum_probs=47.4
Q ss_pred EeeccCcccchhhhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCC----CCCCceeeeeEEEEEEE
Q psy13826 55 LVSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP----DCPHTIGVEFGTRIIEV 130 (173)
Q Consensus 55 ~~s~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~----~~~~t~~~~~~~~~~~~ 130 (173)
.+++..+.+...++..+.... ...+++++|.+|||||||+|+++...... ..++..|.+.....+.+
T Consensus 132 ~vSAk~g~gv~eL~~~l~~~~---------~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~ 202 (360)
T TIGR03597 132 LVSAKKGNGIDELLDKIKKAR---------NKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL 202 (360)
T ss_pred EecCCCCCCHHHHHHHHHHHh---------CCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe
Confidence 345555555555554443221 12589999999999999999999753211 12222333333334444
Q ss_pred CCeEEEEEEEeCCCccc
Q psy13826 131 HGEKIKLQIWDTAGQER 147 (173)
Q Consensus 131 ~~~~~~l~i~D~~g~~~ 147 (173)
++. +.++||||-..
T Consensus 203 ~~~---~~l~DtPG~~~ 216 (360)
T TIGR03597 203 DDG---HSLYDTPGIIN 216 (360)
T ss_pred CCC---CEEEECCCCCC
Confidence 322 46899999643
No 421
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.98 E-value=7.8e-06 Score=56.72 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=29.0
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
||+++|++|||||+|+++|..+.+.. +.+|.+...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~ 35 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV 35 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce
Confidence 58999999999999999999999875 456766443
No 422
>COG2262 HflX GTPases [General function prediction only]
Probab=97.97 E-value=2.6e-05 Score=61.51 Aligned_cols=89 Identities=25% Similarity=0.212 Sum_probs=57.8
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc--ccchhhh-----
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF--RAVTRSY----- 155 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~--~~~~~~~----- 155 (173)
......|.++|=.|+|||||+|++.+.............+..++.+.+.+ ...+.+-||-|--+- ..+...|
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE 267 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE 267 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH
Confidence 34567899999999999999999997654433222222233355555653 223456699984321 1222222
Q ss_pred -hcCCCEEEEEEeCCCCC
Q psy13826 156 -YRGAAGALMVIDVSHVK 172 (173)
Q Consensus 156 -~~~~~~~ilv~d~t~~~ 172 (173)
...||.++.|+|.++|+
T Consensus 268 E~~~aDlllhVVDaSdp~ 285 (411)
T COG2262 268 EVKEADLLLHVVDASDPE 285 (411)
T ss_pred HhhcCCEEEEEeecCChh
Confidence 45799999999999984
No 423
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.96 E-value=1.8e-05 Score=59.34 Aligned_cols=57 Identities=28% Similarity=0.443 Sum_probs=35.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCC--CCCCce--e--eeeEEEEEEECCeEEEEEEEeCCCcccc
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMP--DCPHTI--G--VEFGTRIIEVHGEKIKLQIWDTAGQERF 148 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~--~~~~t~--~--~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 148 (173)
.++++|.+|||||||+|++.+..... +.+... | .+.....+.+.+. .++||||-..+
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~~ 184 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNEF 184 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCcccc
Confidence 68899999999999999999764322 111100 1 1222333444332 58899996543
No 424
>KOG2655|consensus
Probab=97.95 E-value=3.1e-05 Score=60.55 Aligned_cols=62 Identities=26% Similarity=0.469 Sum_probs=45.2
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCC---------CCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD---------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 145 (173)
...|.+.++|++|.|||||+|.++...+..+ ...|..+......+.-++..+.|.+.||||-
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGf 89 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGF 89 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCC
Confidence 3568999999999999999999887754432 2224444444444444677889999999993
No 425
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.95 E-value=1.1e-05 Score=56.93 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=30.6
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..+||+++|++|||||||+.++..+.+ ..+.+|+++..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~ 50 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI 50 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce
Confidence 457999999999999999999998755 45667776443
No 426
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.95 E-value=1.2e-05 Score=57.52 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=30.5
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
..+||+++|++|+|||||++++..+++. .+.+|.+..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~ 54 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT 54 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc
Confidence 4579999999999999999999998874 466675543
No 427
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=3.2e-05 Score=61.57 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=65.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHh--CCCCC------------------CCCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTE--QKFMP------------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 145 (173)
.-..+||-.|.+|||||...++- +.... +.....|+++.+.....+...+.+.+.||||+
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 34678999999999999998862 11100 11223467777777777778888999999999
Q ss_pred cccccchhhhhcCCCEEEEEEeCC
Q psy13826 146 ERFRAVTRSYYRGAAGALMVIDVS 169 (173)
Q Consensus 146 ~~~~~~~~~~~~~~~~~ilv~d~t 169 (173)
+.|..-...-+..+|..|+|.|..
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaA 115 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAA 115 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecc
Confidence 999988888889999999999975
No 428
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.94 E-value=1.9e-05 Score=53.80 Aligned_cols=35 Identities=31% Similarity=0.503 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
+||+++|++|+|||+|++++..+.+...+.++...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~ 36 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTR 36 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCcee
Confidence 69999999999999999999999887777666443
No 429
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.92 E-value=6.6e-06 Score=59.86 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=30.2
Q ss_pred EcCCCCchhhhhHHhhhcccccCcccccceeEEEE
Q psy13826 21 IGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL 55 (173)
Q Consensus 21 ~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~ 55 (173)
||++|||||||+.||+.+.|...+.+|++..+...
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~ 35 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL 35 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEE
Confidence 69999999999999999999999999987655333
No 430
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.91 E-value=1.4e-05 Score=56.59 Aligned_cols=37 Identities=27% Similarity=0.247 Sum_probs=30.9
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.+||+++|+++||||+|+.++..++|.. +.+|.+...
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~ 51 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV 51 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce
Confidence 4699999999999999999999998875 566765443
No 431
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.90 E-value=2.9e-05 Score=68.51 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=50.3
Q ss_pred CChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECC--e---------E-----EEEEEEeCCCccccccchhhhhcCCC
Q psy13826 97 VGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG--E---------K-----IKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 97 vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~---------~-----~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
++||||+..+.+-.....-...+...+....+..+. + . -.+.+|||||++.|..++...+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 459999999987765443222222222222222221 0 0 12789999999999888888889999
Q ss_pred EEEEEEeCCC
Q psy13826 161 GALMVIDVSH 170 (173)
Q Consensus 161 ~~ilv~d~t~ 170 (173)
++++|+|+++
T Consensus 552 ivlLVVDa~~ 561 (1049)
T PRK14845 552 LAVLVVDINE 561 (1049)
T ss_pred EEEEEEECcc
Confidence 9999999986
No 432
>KOG0468|consensus
Probab=97.90 E-value=8.6e-05 Score=61.98 Aligned_cols=88 Identities=23% Similarity=0.346 Sum_probs=64.1
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCC---------------CCceeeeeEEEEEEE-----CCeEEEEEEEeC
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC---------------PHTIGVEFGTRIIEV-----HGEKIKLQIWDT 142 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~---------------~~t~~~~~~~~~~~~-----~~~~~~l~i~D~ 142 (173)
.....++.++|.-+.|||+|+..+....-++-. ....|.++......+ .++..-+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 345789999999999999999999866433211 111233333222222 467788999999
Q ss_pred CCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 143 AGQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
+|+-.|.......++.+|++++++|+..
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~E 232 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAE 232 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEccc
Confidence 9999998777788999999999999854
No 433
>PRK04213 GTP-binding protein; Provisional
Probab=97.89 E-value=1.6e-05 Score=57.57 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=28.9
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccc
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t 47 (173)
...+||+++|++|||||||+++++.+.+...+.++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~ 41 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG 41 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc
Confidence 34579999999999999999999998876554444
No 434
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.88 E-value=1.7e-05 Score=56.72 Aligned_cols=37 Identities=27% Similarity=0.281 Sum_probs=29.7
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
...+||+++|++|||||||++++..+++.. +.+|.+.
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~ 51 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP 51 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc
Confidence 445799999999999999999999987753 4555443
No 435
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.88 E-value=1.3e-05 Score=55.59 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=28.4
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
||+++|+++||||+|++++..+.+.. +.+|++..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~ 34 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFN 34 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcC
Confidence 68999999999999999999888864 45676543
No 436
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.88 E-value=4.6e-05 Score=56.40 Aligned_cols=82 Identities=16% Similarity=0.107 Sum_probs=49.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhC--CCCCC---CCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhh
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQ--KFMPD---CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA------VTRS 154 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~--~~~~~---~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~------~~~~ 154 (173)
..-|.++|++++|||+|+|++.+. .|... ...|.|+-.....+.. +....+.+.||+|....+. ..-.
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHH
Confidence 445789999999999999999998 55422 2334554333222211 2346788999999643321 1112
Q ss_pred hhcC--CCEEEEEEeC
Q psy13826 155 YYRG--AAGALMVIDV 168 (173)
Q Consensus 155 ~~~~--~~~~ilv~d~ 168 (173)
.+.. ++++|+..+-
T Consensus 86 ~l~~llss~~i~n~~~ 101 (224)
T cd01851 86 ALATLLSSVLIYNSWE 101 (224)
T ss_pred HHHHHHhCEEEEeccC
Confidence 2223 7777776554
No 437
>KOG1486|consensus
Probab=97.87 E-value=8.1e-05 Score=55.46 Aligned_cols=84 Identities=25% Similarity=0.237 Sum_probs=53.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCC-CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhhhc
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPD-CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-------AVTRSYYR 157 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-------~~~~~~~~ 157 (173)
--+++++|-|.||||+|+..+..-..... |.-| ..+.-...+.+++. .+++.|.||.-.-. ...-..-+
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFT-TLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFT-TLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeee-EEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEee
Confidence 46899999999999999999876543222 2211 22233444555555 46788999843211 11112357
Q ss_pred CCCEEEEEEeCCCCC
Q psy13826 158 GAAGALMVIDVSHVK 172 (173)
Q Consensus 158 ~~~~~ilv~d~t~~~ 172 (173)
.||.+++|.|.+..+
T Consensus 139 taDlilMvLDatk~e 153 (364)
T KOG1486|consen 139 TADLILMVLDATKSE 153 (364)
T ss_pred cccEEEEEecCCcch
Confidence 799999999998754
No 438
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.85 E-value=1.4e-05 Score=57.36 Aligned_cols=38 Identities=24% Similarity=0.199 Sum_probs=31.0
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccc
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQD 49 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~ 49 (173)
.+...+|+++|++|+|||||+++++.++|...+.++.+
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~ 58 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPG 58 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCC
Confidence 44667999999999999999999999877666555543
No 439
>KOG3905|consensus
Probab=97.83 E-value=8.8e-05 Score=57.17 Aligned_cols=102 Identities=14% Similarity=0.240 Sum_probs=66.4
Q ss_pred hhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCe--EEEEEEEeCCC
Q psy13826 67 LLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE--KIKLQIWDTAG 144 (173)
Q Consensus 67 l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~l~i~D~~g 144 (173)
+-..+++..+..........-.|+++|+.++|||||+.++-+.+ .+.+..|.+|....+.-+.+ ...+.+|-..|
T Consensus 33 lWs~iLsev~T~~~sklpsgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDG 109 (473)
T KOG3905|consen 33 LWSEILSEVSTRTRSKLPSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDG 109 (473)
T ss_pred HHHHHHHHhhhcccccCCCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecC
Confidence 33445555555555555556689999999999999999998765 44555666665544433222 34566787778
Q ss_pred ccccccchhhhhcCC----CEEEEEEeCCCC
Q psy13826 145 QERFRAVTRSYYRGA----AGALMVIDVSHV 171 (173)
Q Consensus 145 ~~~~~~~~~~~~~~~----~~~ilv~d~t~~ 171 (173)
......+....+... ..+||+.|+++|
T Consensus 110 d~~h~~LLk~al~ats~aetlviltasms~P 140 (473)
T KOG3905|consen 110 DLYHKGLLKFALPATSLAETLVILTASMSNP 140 (473)
T ss_pred chhhhhHHhhcccccCccceEEEEEEecCCc
Confidence 665555555444332 367888899887
No 440
>KOG1673|consensus
Probab=97.83 E-value=6.4e-06 Score=56.66 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=43.1
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccc
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITR 64 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~ 64 (173)
.-.+||-++||+.+||||++..|+++++.+++..+.|..+++......+...
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~I 69 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDI 69 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEE
Confidence 3678999999999999999999999999999888888877766555444433
No 441
>KOG0462|consensus
Probab=97.82 E-value=4.4e-05 Score=62.30 Aligned_cols=88 Identities=24% Similarity=0.339 Sum_probs=64.7
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCC-C----------CC--CCCceeeeeEEEEE---EECCeEEEEEEEeCCCcc
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF-M----------PD--CPHTIGVEFGTRII---EVHGEKIKLQIWDTAGQE 146 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~-~----------~~--~~~t~~~~~~~~~~---~~~~~~~~l~i~D~~g~~ 146 (173)
.+..-++.++-.-.-|||||..|++.-.- . +. -+...|+++..+.. ..+++.+.|.+.||||+-
T Consensus 57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence 34567899999999999999999984321 1 11 11233444443332 234677999999999999
Q ss_pred ccccchhhhhcCCCEEEEEEeCCC
Q psy13826 147 RFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 147 ~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
+|......-+..|+++|||+|.++
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~q 160 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQ 160 (650)
T ss_pred cccceehehhhhcCceEEEEEcCc
Confidence 999888888899999999999864
No 442
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.80 E-value=0.00011 Score=51.18 Aligned_cols=56 Identities=30% Similarity=0.397 Sum_probs=39.9
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCC
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 143 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~ 143 (173)
...||.+-|+|||||||++.++.+.--... -+++- +.+..+.-+++.+-+.|.|+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgG-f~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGG-FITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeee-EEeeeeecCCeEeeeEEEEcc
Confidence 357999999999999999999885421111 12221 445666678888888888887
No 443
>KOG1489|consensus
Probab=97.78 E-value=9.9e-05 Score=56.60 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=50.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc----ccchhhh---hcCC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF----RAVTRSY---YRGA 159 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----~~~~~~~---~~~~ 159 (173)
.+-++|-||+|||||++.+...+.. ..|.-|. ..-..-.+.+++- ..+.+-|.||.-+- ..+-..| +..|
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTT-L~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTT-LRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceee-eccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 4459999999999999999876532 2222111 1111112223322 23788899995332 2233333 4579
Q ss_pred CEEEEEEeCCCC
Q psy13826 160 AGALMVIDVSHV 171 (173)
Q Consensus 160 ~~~ilv~d~t~~ 171 (173)
+.+++|.|++.+
T Consensus 276 ~~l~fVvD~s~~ 287 (366)
T KOG1489|consen 276 KGLLFVVDLSGK 287 (366)
T ss_pred ceEEEEEECCCc
Confidence 999999999876
No 444
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.77 E-value=2.8e-05 Score=53.79 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=28.1
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
||+++|++|||||||+++++.+.+ ..+.+|.+...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~ 35 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV 35 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce
Confidence 689999999999999999998884 34556655433
No 445
>KOG1491|consensus
Probab=97.77 E-value=0.00016 Score=55.90 Aligned_cols=86 Identities=20% Similarity=0.189 Sum_probs=55.9
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC---------------CeEEEEEEEeCCCcccc-
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH---------------GEKIKLQIWDTAGQERF- 148 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---------------~~~~~l~i~D~~g~~~~- 148 (173)
..+|+-++|.|+||||||+|.+.........-|...++-....+.+. .....|+++|++|.-+-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 46799999999999999999999876554433322222222233321 23467999999985332
Q ss_pred ---ccchhhh---hcCCCEEEEEEeCCC
Q psy13826 149 ---RAVTRSY---YRGAAGALMVIDVSH 170 (173)
Q Consensus 149 ---~~~~~~~---~~~~~~~ilv~d~t~ 170 (173)
..+...| +|.+|+++=|++...
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 2344443 577999988876543
No 446
>KOG1424|consensus
Probab=97.77 E-value=4e-05 Score=62.02 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=45.9
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 145 (173)
..+.|-+||=|||||||+||.+.+.+-.. -+.|.|.+-+..++.+... +.++||||.
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~~---v~LCDCPGL 369 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSPS---VCLCDCPGL 369 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCCC---ceecCCCCc
Confidence 37899999999999999999999987654 3457787777777776553 568899995
No 447
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.76 E-value=0.00013 Score=58.74 Aligned_cols=85 Identities=22% Similarity=0.334 Sum_probs=65.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCC--CCCC------------CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQK--FMPD------------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 151 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~--~~~~------------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 151 (173)
.-+|+++-.-.-|||||+..++... |.+. .....|+++..+...+..+...+.|.||||+..|..-
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 3579999999999999999998542 3221 1223455555555555566678899999999999988
Q ss_pred hhhhhcCCCEEEEEEeCCC
Q psy13826 152 TRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 152 ~~~~~~~~~~~ilv~d~t~ 170 (173)
.+..+.-.|++++++|..+
T Consensus 85 VERvl~MVDgvlLlVDA~E 103 (603)
T COG1217 85 VERVLSMVDGVLLLVDASE 103 (603)
T ss_pred hhhhhhhcceEEEEEEccc
Confidence 8888999999999999864
No 448
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.75 E-value=5.5e-05 Score=57.83 Aligned_cols=59 Identities=22% Similarity=0.338 Sum_probs=35.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCC--CCCCc--ee--eeeEEEEEEECCeEEEEEEEeCCCccccc
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMP--DCPHT--IG--VEFGTRIIEVHGEKIKLQIWDTAGQERFR 149 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~--~~~~t--~~--~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 149 (173)
-.+++|.+|||||||+|++....-.. +.+.. .| .+.....+.+.+.. .|.||||-..+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 57899999999999999998642111 11110 11 12234445553222 367999976554
No 449
>KOG1145|consensus
Probab=97.75 E-value=7.8e-05 Score=60.94 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=61.0
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
...=|.++|.-.-|||||+..|-+..........+.-.+....+.+... -.+.|.||||+..|..++..--.-+|+++|
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 4455789999999999999999876543322222222222333444422 467788999999999999988889999999
Q ss_pred EEeCCC
Q psy13826 165 VIDVSH 170 (173)
Q Consensus 165 v~d~t~ 170 (173)
|+...|
T Consensus 231 VVAadD 236 (683)
T KOG1145|consen 231 VVAADD 236 (683)
T ss_pred EEEccC
Confidence 997665
No 450
>KOG3887|consensus
Probab=97.74 E-value=2.5e-05 Score=57.78 Aligned_cols=81 Identities=22% Similarity=0.333 Sum_probs=54.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEE--EEEECCeEEEEEEEeCCCccccc-c--chhhhhcCCCE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEVHGEKIKLQIWDTAGQERFR-A--VTRSYYRGAAG 161 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~l~i~D~~g~~~~~-~--~~~~~~~~~~~ 161 (173)
.+|+++|...+||||+.+....+-.+.+ |.-.+-..+ .-.+.+.-+.+++||.|||-.+- . -....++.+-+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPne---TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNE---TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCc---eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 4599999999999999888776543322 222211111 11234466889999999996542 2 12456889999
Q ss_pred EEEEEeCCC
Q psy13826 162 ALMVIDVSH 170 (173)
Q Consensus 162 ~ilv~d~t~ 170 (173)
+|+|.|..+
T Consensus 105 LifvIDaQd 113 (347)
T KOG3887|consen 105 LIFVIDAQD 113 (347)
T ss_pred EEEEEechH
Confidence 999999865
No 451
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.73 E-value=7.8e-05 Score=57.25 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=36.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCC-CC-c--ee--eeeEEEEEEECCeEEEEEEEeCCCccccc
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDC-PH-T--IG--VEFGTRIIEVHGEKIKLQIWDTAGQERFR 149 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~-~~-t--~~--~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 149 (173)
-.++++|++|||||||+|.+.+....... .+ + .| .+.....+.+.+. ..++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 46899999999999999999976533211 00 0 11 1222233334322 2488999986543
No 452
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.72 E-value=4.8e-05 Score=53.44 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=29.5
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
..+||+++|++|+|||+|++++....+.. +.+|.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~ 48 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGF 48 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCc
Confidence 46899999999999999999999876643 5566664
No 453
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.70 E-value=3.6e-05 Score=54.78 Aligned_cols=35 Identities=26% Similarity=0.240 Sum_probs=28.0
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccc
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t 47 (173)
+..++|+++|++|+|||||+++++...+...+.++
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~ 50 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKT 50 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC
Confidence 45679999999999999999999988654443333
No 454
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.69 E-value=6e-05 Score=53.58 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=36.2
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEee
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVS 57 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s 57 (173)
...+||+++|..++|||++++++..+.+.. ..||.++....+..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~~i~~ 55 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIEEIKY 55 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEEEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccceeee
Confidence 457899999999999999999999887665 77888877655443
No 455
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.67 E-value=0.00034 Score=52.29 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=23.9
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCC
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQK 110 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~ 110 (173)
-....++++|+.|+||||+++.+++..
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCC
Confidence 445689999999999999999999875
No 456
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.67 E-value=0.00018 Score=58.04 Aligned_cols=86 Identities=27% Similarity=0.382 Sum_probs=62.7
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCC-----------C--CCCCceeeeeEEEEEEE-----CCeEEEEEEEeCCCcc
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFM-----------P--DCPHTIGVEFGTRIIEV-----HGEKIKLQIWDTAGQE 146 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~-----------~--~~~~t~~~~~~~~~~~~-----~~~~~~l~i~D~~g~~ 146 (173)
..-+..++-.-.-|||||..|++...-. + +.....|+++....+.+ +++.+.|++.||||+-
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 3456788888899999999999854211 1 11123344444444333 4578999999999999
Q ss_pred ccccchhhhhcCCCEEEEEEeCCC
Q psy13826 147 RFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 147 ~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
.|.......+..|.+.+|++|.++
T Consensus 88 DFsYEVSRSLAACEGalLvVDAsQ 111 (603)
T COG0481 88 DFSYEVSRSLAACEGALLVVDASQ 111 (603)
T ss_pred ceEEEehhhHhhCCCcEEEEECcc
Confidence 998777777889999999999986
No 457
>PRK00098 GTPase RsgA; Reviewed
Probab=97.66 E-value=0.00012 Score=56.50 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhCC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQK 110 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~ 110 (173)
.++++|.+|||||||+|.+++..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999998764
No 458
>KOG0082|consensus
Probab=97.64 E-value=0.00019 Score=56.20 Aligned_cols=38 Identities=16% Similarity=0.348 Sum_probs=33.2
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 134 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 134 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
...+.++|.+||..-+.-|.+++.+++++|+|.++++-
T Consensus 194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeY 231 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEY 231 (354)
T ss_pred CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhh
Confidence 36788999999988788888999999999999998763
No 459
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.62 E-value=6.6e-05 Score=52.39 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=25.1
Q ss_pred EEEEEcCCCCchhhhhHHhhhcc------cccCcccccce
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQK------YFLGLQLTQDY 50 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~------~~~~~~~t~~~ 50 (173)
+|+++|++|||||+|+.++.... +...+.+|++.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~ 40 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGL 40 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCcccc
Confidence 48999999999999999997542 23345556443
No 460
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.61 E-value=0.00013 Score=59.45 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=56.1
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCC---CCCCCC--c--eeeeeEEE--------EE---EECC------------
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF---MPDCPH--T--IGVEFGTR--------II---EVHG------------ 132 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~---~~~~~~--t--~~~~~~~~--------~~---~~~~------------ 132 (173)
.+..+.|.++|.-..|||||+..+.+-.. .++... | .|...... .. ....
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 35568999999999999999999986422 111100 1 11110000 00 0000
Q ss_pred e----EEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 133 E----KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 133 ~----~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
. ...+.+.|+||++.|-...-.....+|++++|+|.++
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~ 152 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANE 152 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 0 1357889999999886555556778999999999986
No 461
>PRK15494 era GTPase Era; Provisional
Probab=97.61 E-value=0.00011 Score=57.82 Aligned_cols=37 Identities=30% Similarity=0.309 Sum_probs=29.6
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccc---cCcccccce
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYF---LGLQLTQDY 50 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~---~~~~~t~~~ 50 (173)
..+||+++|++|||||||+++++.+.+. ....+|.+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~ 90 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSI 90 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCc
Confidence 4569999999999999999999988874 344555443
No 462
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00032 Score=59.79 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=64.4
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCC--------------CC--CCCCceeeeeEEEEEEECCe-EEEEEEEeCCCc
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF--------------MP--DCPHTIGVEFGTRIIEVHGE-KIKLQIWDTAGQ 145 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~--------------~~--~~~~t~~~~~~~~~~~~~~~-~~~l~i~D~~g~ 145 (173)
....-+|.++|.-.+|||||..+++-..- .+ +.....|+++.........+ .+.+++.||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 34566899999999999999999984321 10 01122355555555555444 478889999999
Q ss_pred cccccchhhhhcCCCEEEEEEeCCC
Q psy13826 146 ERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 146 ~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
-+|.......++-+|++|+|+|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdave 111 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVE 111 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCC
Confidence 9999888888999999999999753
No 463
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.59 E-value=0.00033 Score=55.12 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=40.6
Q ss_pred CCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 116 PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 116 ~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
.||.|.... .+.+ ..+.+.+||.+|+...+..|..++.+++++|+|.|+++.
T Consensus 169 ~~T~Gi~~~--~f~~--~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~ 220 (342)
T smart00275 169 VPTTGIQET--AFIV--KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEY 220 (342)
T ss_pred CCccceEEE--EEEE--CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECccc
Confidence 355564432 2333 346688999999999999999999999999999999973
No 464
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.58 E-value=3.7e-05 Score=57.44 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=18.6
Q ss_pred EEEEEeCCCccccccchhhhh--------cCCCEEEEEEeCC
Q psy13826 136 KLQIWDTAGQERFRAVTRSYY--------RGAAGALMVIDVS 169 (173)
Q Consensus 136 ~l~i~D~~g~~~~~~~~~~~~--------~~~~~~ilv~d~t 169 (173)
.+.|+|||||.++-..++... ...-+++++.|..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~ 133 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSS 133 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecc
Confidence 678999999987654443322 3455788888865
No 465
>KOG0458|consensus
Probab=97.57 E-value=0.00052 Score=56.49 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=62.2
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCCC-----------------------------CCCCceeeeeEEEEEEECC
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-----------------------------DCPHTIGVEFGTRIIEVHG 132 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 132 (173)
.....+.++++|.-.+|||+|+-+++..--.. ..+...|++.......++.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 34467899999999999999999987541100 1112234444444555556
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
....+.|.|.||+..|..-.-.-...||+.+||+|.+-
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~ 290 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST 290 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCc
Confidence 66778899999988886544445567999999999874
No 466
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.55 E-value=6.8e-05 Score=54.61 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=27.1
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccccCcccc
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t 47 (173)
.|+++|++++|||+|+.++..++|...+.++
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~ 32 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI 32 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE
Confidence 6899999999999999999999887765544
No 467
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.53 E-value=0.00013 Score=52.94 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=24.3
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
..++|+++|++|||||||+++++.+.+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~ 66 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADV 66 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchh
Confidence 356999999999999999999998875
No 468
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.53 E-value=9.3e-05 Score=53.60 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccC
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLG 43 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~ 43 (173)
+||+++|++|+|||||++.++...+...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~ 29 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEE 29 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence 6999999999999999999998665443
No 469
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.52 E-value=0.00019 Score=54.78 Aligned_cols=30 Identities=23% Similarity=0.620 Sum_probs=26.3
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccC
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLG 43 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~ 43 (173)
..++|+++|++|+|||||+++++...+...
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~ 32 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPS 32 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccc
Confidence 468999999999999999999998877543
No 470
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.51 E-value=7.1e-05 Score=51.79 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=26.8
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccccCcccccc
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQD 49 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~ 49 (173)
+|+++|++|+|||||++.++++.+.....++.+
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~ 33 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPG 33 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCC
Confidence 478999999999999999997777665555543
No 471
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.50 E-value=9.7e-05 Score=51.57 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=23.3
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccc
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYF 41 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~ 41 (173)
+|+++|++|||||||++++..+.+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~ 26 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPE 26 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCc
Confidence 7999999999999999999998874
No 472
>PRK13768 GTPase; Provisional
Probab=97.42 E-value=0.00023 Score=53.71 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=24.9
Q ss_pred EEEEEeCCCcccc---ccchhhhhcC-----CCEEEEEEeCCCC
Q psy13826 136 KLQIWDTAGQERF---RAVTRSYYRG-----AAGALMVIDVSHV 171 (173)
Q Consensus 136 ~l~i~D~~g~~~~---~~~~~~~~~~-----~~~~ilv~d~t~~ 171 (173)
.+.+||++|+.+. +..++.+++. ++++++++|.+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~ 141 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLA 141 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHh
Confidence 5789999998653 3333333332 8999999998653
No 473
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.41 E-value=0.00051 Score=53.28 Aligned_cols=82 Identities=23% Similarity=0.195 Sum_probs=50.4
Q ss_pred EEEEeCCCCChHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc----ccchhh---hhcCCC
Q psy13826 89 YIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF----RAVTRS---YYRGAA 160 (173)
Q Consensus 89 i~l~G~~~vGKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----~~~~~~---~~~~~~ 160 (173)
|-++|-|++|||||++.+...+.. .+|+-|.-.. ..-.+.+ ...-.+.+-|.||.-.- ..+-.. .+..+.
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~P-nLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVP-NLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccC-cccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 349999999999999999877532 3343222111 1122333 22235678899985321 122233 356799
Q ss_pred EEEEEEeCCCCC
Q psy13826 161 GALMVIDVSHVK 172 (173)
Q Consensus 161 ~~ilv~d~t~~~ 172 (173)
+++.|.|++..+
T Consensus 240 vL~hviD~s~~~ 251 (369)
T COG0536 240 VLLHVIDLSPID 251 (369)
T ss_pred eeEEEEecCccc
Confidence 999999998654
No 474
>KOG0083|consensus
Probab=97.41 E-value=1.8e-05 Score=53.10 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=33.6
Q ss_pred EEEcCCCCchhhhhHHhhhcccccC-cccccceeEEEEeeccCcccch
Q psy13826 19 IIIGDMGVGKSCLLHQFTEQKYFLG-LQLTQDYVCLRLVSTSQPITRK 65 (173)
Q Consensus 19 ~~~g~~~vgkt~l~~~~~~~~~~~~-~~~t~~~~~~~~~s~~~~~~~k 65 (173)
+++||+++|||||+.||-.+.|... +.+|+|-.+...+....+...+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvk 48 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVK 48 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEE
Confidence 3789999999999999999999654 5566776665444444443333
No 475
>KOG4423|consensus
Probab=97.41 E-value=1.1e-05 Score=57.09 Aligned_cols=40 Identities=28% Similarity=0.536 Sum_probs=37.0
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..++|++++|+.|||||+++.||++..|+.+|..|++..+
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdf 62 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDF 62 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHH
Confidence 5678999999999999999999999999999999988665
No 476
>KOG3859|consensus
Probab=97.37 E-value=0.00048 Score=52.14 Aligned_cols=61 Identities=26% Similarity=0.500 Sum_probs=46.0
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCC----CceeeeeEEEEEEECCeEEEEEEEeCCC
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP----HTIGVEFGTRIIEVHGEKIKLQIWDTAG 144 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~l~i~D~~g 144 (173)
...|+|+.+|..|.|||+|+..+.+-.|..+.. |++.....+..+.-.+.+++|.|.||.|
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 467899999999999999999999988876543 3333333333333367788999999998
No 477
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.36 E-value=0.00017 Score=50.21 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=24.6
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccccC
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYFLG 43 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~~~ 43 (173)
.|+++|++|+|||||++++..+.+...
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~ 28 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAG 28 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccc
Confidence 589999999999999999999988664
No 478
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.35 E-value=0.00029 Score=49.83 Aligned_cols=52 Identities=31% Similarity=0.404 Sum_probs=32.3
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~ 142 (173)
||++-|++|+||||++++++..- .....+.-| +.+..+.-++.++-+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l-~~~~~~v~G--f~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL-KKKGLPVGG--FYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH-HHTCGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHh-hccCCccce--EEeecccCCCceEEEEEEEC
Confidence 68999999999999999988542 111122333 33444444566666666666
No 479
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.35 E-value=0.0002 Score=47.14 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchhhhhHHhhhc
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~ 38 (173)
+|+++|.+|+|||||++.++..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999975
No 480
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=97.31 E-value=0.00035 Score=55.14 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=30.5
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccc--cCcccccceeEEE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYF--LGLQLTQDYVCLR 54 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~--~~~~~t~~~~~~~ 54 (173)
.++|+++|+++||||||+++++...+. ....+|.+.....
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~ 230 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRR 230 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEE
Confidence 469999999999999999999987653 2345666654433
No 481
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.30 E-value=0.00027 Score=46.80 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.|++.|.+||||||+++.++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999875
No 482
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.24 E-value=0.00024 Score=49.20 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchhhhhHHhhh
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTE 37 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~ 37 (173)
-|+++|+++||||||+++++.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 478999999999999999985
No 483
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.23 E-value=0.0003 Score=49.07 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
++|+++|.++||||+|+++++..+.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~ 25 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ 25 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc
Confidence 4899999999999999999997764
No 484
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.22 E-value=0.00031 Score=50.57 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=24.2
Q ss_pred EEEEEcCCCCchhhhhHHhhh--cccccCc
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTE--QKYFLGL 44 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~--~~~~~~~ 44 (173)
+|+++|+++||||||+.+|+. +.|...+
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~ 33 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENE 33 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccC
Confidence 799999999999999999997 6665543
No 485
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.21 E-value=0.0003 Score=49.27 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchhhhhHHhhhc
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~ 38 (173)
-++++|.+|||||||++.+...
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999876
No 486
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.21 E-value=0.00027 Score=49.16 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
++|+++|++|+|||+|+++++...+
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~ 27 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEER 27 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccc
Confidence 6899999999999999999998754
No 487
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.20 E-value=0.00031 Score=48.13 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
+||+++|++|+|||++++++....+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~ 26 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDR 26 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCce
Confidence 4899999999999999999997764
No 488
>KOG1144|consensus
Probab=97.20 E-value=0.00068 Score=57.46 Aligned_cols=85 Identities=21% Similarity=0.271 Sum_probs=57.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCC----ceeeeeEEEE--------EEECCe----EEEEEEEeCCCccccc
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH----TIGVEFGTRI--------IEVHGE----KIKLQIWDTAGQERFR 149 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~----t~~~~~~~~~--------~~~~~~----~~~l~i~D~~g~~~~~ 149 (173)
..=|+++|.-..|||-|+..+-+.+....... .+|.+|.... +.-+.+ .--+.+.||+|++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 34589999999999999999887544332222 2333332211 000011 1235678999999999
Q ss_pred cchhhhhcCCCEEEEEEeCCC
Q psy13826 150 AVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 150 ~~~~~~~~~~~~~ilv~d~t~ 170 (173)
.++...-.-||.+|+|+|+..
T Consensus 555 nlRsrgsslC~~aIlvvdImh 575 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMH 575 (1064)
T ss_pred hhhhccccccceEEEEeehhc
Confidence 999999999999999999863
No 489
>KOG0096|consensus
Probab=97.17 E-value=0.00072 Score=48.21 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=36.0
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..+|++++||.|.|||+.+.|...++|...+.+|.|...
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~ 47 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEV 47 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEE
Confidence 467999999999999999999999999999999988654
No 490
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.16 E-value=0.00041 Score=47.77 Aligned_cols=26 Identities=38% Similarity=0.379 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
..+|+++|++|+|||++++++....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~ 28 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKI 28 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCce
Confidence 36899999999999999999987654
No 491
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.16 E-value=0.00053 Score=55.76 Aligned_cols=26 Identities=42% Similarity=0.563 Sum_probs=23.4
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQK 39 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~ 39 (173)
..+||+++|++|||||||+++++...
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~ 227 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQD 227 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34699999999999999999999875
No 492
>KOG0410|consensus
Probab=97.16 E-value=0.0009 Score=51.71 Aligned_cols=86 Identities=21% Similarity=0.203 Sum_probs=50.8
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccchhhh
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE---------RFRAVTRSY 155 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~---------~~~~~~~~~ 155 (173)
...-|.++|=.|+|||||++.+.......+..-....+............ .+-+-||-|-- .|+... .-
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATL-ee 254 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATL-EE 254 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHH-HH
Confidence 34568999999999999999998554332222111111112222232222 23456998832 122211 23
Q ss_pred hcCCCEEEEEEeCCCCC
Q psy13826 156 YRGAAGALMVIDVSHVK 172 (173)
Q Consensus 156 ~~~~~~~ilv~d~t~~~ 172 (173)
...+|.++-|.|+++|+
T Consensus 255 VaeadlllHvvDiShP~ 271 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPN 271 (410)
T ss_pred HhhcceEEEEeecCCcc
Confidence 56799999999999985
No 493
>PRK08118 topology modulation protein; Reviewed
Probab=97.15 E-value=0.0004 Score=49.05 Aligned_cols=22 Identities=50% Similarity=0.699 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
||+++|++|+|||||...+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999865
No 494
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.13 E-value=0.00077 Score=46.25 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=35.5
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccchhhhhhh
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWAL 71 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~k~l~~~~ 71 (173)
||+++|+.|+|||+|++++...+........+.+. -..++.....-..+++...
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~-~~~IDTPGEyiE~~~~y~a 56 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYY-DNTIDTPGEYIENPRFYHA 56 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcCccceeEec-ccEEECChhheeCHHHHHH
Confidence 89999999999999999999876643332233322 3445665555555544433
No 495
>KOG1954|consensus
Probab=97.09 E-value=0.0031 Score=49.72 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=29.5
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD 114 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~ 114 (173)
..++...-|+++|.-..||||+++.++..+|+.-
T Consensus 53 ~dfd~KPmill~GqyStGKTtfi~yLle~dypg~ 86 (532)
T KOG1954|consen 53 PDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGL 86 (532)
T ss_pred cccccCceEEEEeccccchhHHHHHHHhCCCCcc
Confidence 4566677899999999999999999999998753
No 496
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.0005 Score=49.11 Aligned_cols=22 Identities=32% Similarity=0.659 Sum_probs=20.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
||+++|+||+||||+..+++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999876
No 497
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.0018 Score=50.64 Aligned_cols=86 Identities=21% Similarity=0.266 Sum_probs=56.9
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCC--C-------CC----------------------CCceeeeeEEEEEEECC
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM--P-------DC----------------------PHTIGVEFGTRIIEVHG 132 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~--~-------~~----------------------~~t~~~~~~~~~~~~~~ 132 (173)
...++++..|.-.-|||||+-|++.+.-. + .. +...|+++...-..+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 45789999999999999999999876311 0 00 01113333222222334
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCC
Q psy13826 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169 (173)
Q Consensus 133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t 169 (173)
.+-++.|-||||++.|..-...--..||+.|+++|.-
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR 120 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR 120 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc
Confidence 4457888999999988654444456799999999973
No 498
>PRK09866 hypothetical protein; Provisional
Probab=97.07 E-value=0.0016 Score=54.95 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccC-cccc-cceeEEEEeeccCcccchhhhhhhhh----ccccCCCCCcceeeEE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLG-LQLT-QDYVCLRLVSTSQPITRKNLLWALVS----KMSSSGQYSYSYIFKY 89 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~-~~~t-~~~~~~~~~s~~~~~~~k~l~~~~~~----~~~~~~~~~~~~~~ki 89 (173)
+.++++|++|+|||+|++.++....... ..++ .-....+-............-..+++ ..+..-...+...+..
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~pg~re~~L~~dtvgfI~~ll~~Lp~~Lv~~f~atl~e 149 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTD 149 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecCCcCceeeecCCccchHHHHHHhhHHHHHhhhhHHHH
Q ss_pred EEEeCCCCChHHHHHHHHhCCCCCCC--------------------------------------CCceeeeeEEEEEEEC
Q psy13826 90 IIIGDMGVGKSCLLHQFTEQKFMPDC--------------------------------------PHTIGVEFGTRIIEVH 131 (173)
Q Consensus 90 ~l~G~~~vGKssl~~~~~~~~~~~~~--------------------------------------~~t~~~~~~~~~~~~~ 131 (173)
..--++. .+.|+.++-.+.-.+.. -|.+.+++ ...-.-.
T Consensus 150 ~~~ad~d--~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~~~l~~~~p~d~ya~~~~~p~iev~f-~hl~g~l 226 (741)
T PRK09866 150 VLEIDKD--MRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEF-VHLAGLE 226 (741)
T ss_pred HHhcCcc--HHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHHHhhcCCCcHHHHhhhhcCceeeeee-eeccccc
Q ss_pred CeEEEEEEEeCCCccc-----cccchhhhhcCCCEEEEEEeCCCCCC
Q psy13826 132 GEKIKLQIWDTAGQER-----FRAVTRSYYRGAAGALMVIDVSHVKE 173 (173)
Q Consensus 132 ~~~~~l~i~D~~g~~~-----~~~~~~~~~~~~~~~ilv~d~t~~~S 173 (173)
....++.+.||||-.. ........+..+|+|++|.|.++.-+
T Consensus 227 ~~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s 273 (741)
T PRK09866 227 SYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKS 273 (741)
T ss_pred cccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCC
No 499
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.06 E-value=0.00047 Score=52.45 Aligned_cols=25 Identities=44% Similarity=0.481 Sum_probs=22.9
Q ss_pred EEEEEcCCCCchhhhhHHhhhcccc
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYF 41 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~ 41 (173)
+|+++|.+|||||||+++++...+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~ 26 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS 26 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe
Confidence 7999999999999999999988763
No 500
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.04 E-value=0.00059 Score=46.42 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=18.5
Q ss_pred EEEEeCCCCChHHHHHHHHh
Q psy13826 89 YIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 89 i~l~G~~~vGKssl~~~~~~ 108 (173)
|+++|++|+||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999983
Done!